lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 4 1 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 444 333333333 222 111 22222222222 3 44444444444 2 3333 33 44 33 11 2222 1 1 1 555555555555555555555 11 3 7777777777777777777 111 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 11 1 33333333333 1 55555 11111 111 2222222 11 222222222222222 66666666666666666666666666666666666 22222 11 444444444444444444444 2222 11111111111111111 11111 111 44444444444444 2222222222 22 4444444444444444444444444 11 111 000000000000000000000000000000000000000000000000000 3 33 2222 222222222 111 88888888888888888888888888888888888888888888888888888888888888 111 3333 1111 111111 333 3333333 1 11 2
lowQualScore : 0 6 0 3 6 88 1 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 9 444 222222222 2 777 0 444 3 88888888888 3 77777777777 1 0 0 0 5555 8 55 33 8 8 55 11 1111 6 5 6 777777777777777777777 11 0 8 3 2 1111111111111111111 0 88 555 5 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 11 3 88888888888 7 11111 88 88888 3 7 000 8 9999999 44 666666666666666 5 55555555555555555555555555555555555 1 44444 1 00 222222222222222222222 6 6 0000 6 6 44444444444444444 66666 333 5 22222222222222 5 2222222222 6 88 66 5 5 5555555555555555555555555 1 55 6 222 5 5 222222222222222222222222222222222222222222222222222 4 1 00 6 1111 3 555555555 5 666 88 6 0 00000000000000000000000000000000000000000000000000000000000000 5 333 2222 2222 222222 99 444 4444444 6 11 0 4
lowQualScore : . . . . . .. . . .................................................................................... . . ... ......... . ... . ... . ........... . ........... . . . . .... . .. .. . . .. .. .... . . . ..................... .. . . . . ................... . .. ... . . .................................................................................. .. .. . ........... . ..... .. ..... . . ... . ....... .. ............... . ................................... . ..... . .. ..................... . . .... . . ................. ..... ... . .............. . .......... . .. .. . . ......................... . .. . ... . . ................................................... . . .. . .... . ......... . ... .. . . .............................................................. . ... .... .... ...... .. ... ....... . .. . .
lowQualScore : 7 0 0 3 0 33 0 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 0 555 888888888 2 888 8 000 2 88888888888 2 88888888888 0 8 4 8 0000 0 00 00 0 0 00 00 8888 0 0 0 444444444444444444444 00 8 0 8 0 6666666666666666666 8 88 222 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 00 2 88888888888 2 44444 33 55555 7 3 888 0 6666666 11 444444444444444 7 44444444444444444444444444444444444 4 55555 0 00 777777777777777777777 7 7 2222 7 7 22222222222222222 77777 111 7 33333333333333 0 6666666666 2 11 88 0 0 5555555555555555555555555 0 88 7 000 7 7 333333333333333333333333333333333333333333333333333 3 0 00 7 5555 7 000000000 2 888 88 7 7 77777777777777777777777777777777777777777777777777777777777777 7 888 7777 1111 777777 22 888 5555555 0 00 4 0
consensus : CAACAATCATTG-AT-CATT--GCGGAAGACNTCC-TGATATAATANATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----CTGTT--GTNTATTCAGCACCA-ATAAATTTCAAATTTGGAAATCA-ACGAT-TTTCGTTTCA-TGGCAACCAACA---TTAATTCTCT-ATA-----TCAAAT-TTGTT--A-TGATTT-AAAGATAACATTCAATAGGAGTCA-GTTA-TCAAGATAA-TATACTTTGA-TTTCAAAT-AAA-TTT-GT--ATTAT--AAATTGCATTGAAAA--TGT-TACACAACTGA-ACTGCC--AAATCACGACGAAA-TGTATCATTTTGTTTCC-----ATGG-AAAC-AC-AGCTTAGAAGNCAGATTCCCACAATATGT-----TTC--ATTG--TTATATGA--TAGTACTAGG---TCTAATGCA-TGTT-TG---A-CAAGCAT-TC-A----AT-A-TTT--CAA--GCTGGGTG---GG-AGN-ATTNTTTACCCA--A-TATTC-GAT---T-TGCCTCTAAAAATGGCT-TTT-TA---GAAT-TGTC--A---A-TAC-CCCTC-TTT-CGCNAAGAGAGAA-T-AA---ACGACG-TG--A-AGAAATATTCAAAA-CCCAT-AACT--A---TGT----------C-AAA-CT-A--AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACA-TTT--TAT--AT--G--ATATTTTATGAAAATC---GAACGACT-AAAACCAGCA-TA-TTCGNA--T---AAA-AA-----ATGTC-ATTTTTCAT--GTTA-AAA-A-TGCC-TCT-TT-T--TGACCCTAG-TGA------CA-TGCAC-GCGT---TAC----CACATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCATGA--T--G-T-TCTACGTT-ACTAA-CGGG-AAATTAAGTCCGATGT-CCAAAATTTG--AGAAAAA-ATCG----G-TGA--C--GGT--------TGC-GTGCCGGA---CCCCTTA-TA----TA---A--ATG--TTN--AGTGG-TT-A--CAGAGA--ATGGCTTCTTAANTC
Reference ( gi|2 ) : CAACAGTCACTGGAT-CACT--GTGAAAGACATTC-TTATATATTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATT----CTGTT--ATCCA--CAGCACCA-ATAAATTTAAAATT--GAAATTA-A--AT-TTTCATTCC--TGGCAACCAACA---TTAATTCTCT-ATA-----TCAAATCTTGTT--AATGATCT-AAAGATAACATTCAATAGGAG-CT-GTTA-TCAAGATA--TATACTTTG--TTTCAAAT-AAA-TT--GT--ATTTT--AA-TTCCATTG-AA---TGT-TACACAACTGA-A-TGCC--AAATCACGACGAAA-TGCATCATTTT-TTTCC-----A----GAAC-A--AGCTTAGAAAGCAGATTTCCACAACATGT-----GTT--ATTT--TAATATGA--GA-TACTAGGA--TCTAATGC--TGCT-TG---A-CAAGCAT-TC-A----AT-A-TTT--CAA--GCTGCGT----GG-ATC-ATTATTTACCCA-CA-CATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TG---TAAT-TGTC--A---A-TAC-CACTC-TTT-CATAAGGAGAGAA-T-AA---ATGATG-TG--A-AGAGATATTC-AA--CCCAC-AACT--A---TGT----------C-AAA-CT-A--A-C-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACA-TTT--TA---AT--T--ATATTTTATGAAAATC---AAACGACTTAAAATCAGCA-TA-TTCGTA--T---AAACAA-----ATGT--ATTTTTCAT--GTTA-AAA-A-TGCC-TCT-TT-T--TGACCCT---TGA------CA-CGCACTGTGT---TAC----T-C--GGCAA-AGGGTTGCCTAGGCAA-C--A-AATCATGA--T--G-T-TCTACGTTTACTAA-CGGG-AAGT--AGTCCTATGTGCCAGAATTTGGCAGAAAAA-ATCG----G-TGA--T--GGT-------CTGC-GTGCCGGA---CCCTGT--TA----TA---A--ATG--TTAT-AGTGG-T--A--CAG-GA--ATGGCTTCTTAAATC
gi|4 : CAACAACCATTG-AT-CATT--GCGAAAGACTNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNT--GTTTATTCAGCACCA-ATAAATGTCAAATTTTGAAATCA-ACGAT-TTTCATTCCA-TGGCAACCAACA---TTAATCCT-T-ATA-----TCAAAT-TTGTT--A-TGATTTTAAAGATAACAT-CAAT--TAGTCA-ATTA-TCAAGATAATTATACTTTGA-TTTCAAAT-AAA-TTT-GTTAATTAT--AAATTGCACTG-AAA--TGT----ACCACTGA-ACTGCC--AAATCACGACGAAA-TGCATCATTTTGTTTCC-----ATG--GAAC-AC-AGCTTAGAAGCCAGATTCCCA--ACATGT-----TTTTCATTG--TTATATGA--TAGTACTAGG---TCTAATAAA-TG-T-TG---ATCAAG-AT-TC-A----AT-A-TTT--CAT--GCTGGGT----GG-GAT-AATGTTTACCCA--A-CATTCAAAT---C-TGCTTCT-AAACTGGCT-TTTATA---GAAT-TGTCA-A---A-TAC-ACCTC-TTTGCA-AGAGAGA-AA-T-AACCCATGAC--------AGGAATATTCAAA--CCCAT-AACTAAA---TGT----------C-AAA-CTAA--A-C-A-CT-A-GAA-A---TGT---TG-----AAA-A-TGAACA-TTTTATA---AT--G--ATATTTTATG-AAATC---GAACAAC-TGAAACTAGCA-TA-TTCGGATTT---AAA-AA-----ATGTC-ATTTT
gi|1 : attgaaatcctttcatttCAACAATCATTG-AT-CATT--GTGGAAGANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNT--GTATATTCAGCACCA-ATAAATTTCAAATTTGGAAATTT-ACGAT-TTTCGTTTCCATGGCAACCAACA---TTAATTCT-T-ATA-----TCAAAT-TTGTT--A-TGATCT-AAAGATAACAT-CATTAGGAGTCA-GTTA-TCAAGATAA-TATATTTTGA-TTTCAAAT-AAA-TTT-GT--ATTAT--AAATTGCATTG-AAA--TGT--AC-CATCTGA-ACTGCC--AAA---CGAC--AA-TATATT-TTGT-TTTCCTATGGA----AAAC-A---GCTTAGAAGCCAGATC-CCACATTGTTTTTTCAGTT--ATGTAGTGATCTGATTGAGTACTATGAGGTCTA-TGCAATGTTGTG-----CAAG-ATGTC-A----AA-A-TTTTTCAA--GCTGGGT----GG-AGCGATTTTATACCCA-AATTGTTT-GAT---TATGCCT-TAAAGGGGGTT-TTC-TATGCTAA--TGTC--AAATA-TAC-C-TTC-ATT-TACAAGAGAAAAA-C-TA---AGGATGTTGACA-AGAGGAATT
gi|5 : tgaaatcctttcatttACAGTCATTG-ATGCATTTTGTGGA-GACATCCATGATATAATA-ATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGTTTAATC-----AGCACTATAGAAATTTCAAATTTGGAAATCA-A--CCATTTCTTTCCA-TGGCAACCAACA---TTAATTTTTTCCTG-----TCAAAATTTGTTTGTATAATTTAAAAGAT-ACATT-AATAGGAGTCA-GTTATTCAAGATA--TATACTTTGACTTTCAAATAAAA-TTTGGT--ATTATGAAA-TTGCATTGAAA---TG--TACA-AACTGACACTGCTCGAAATTACGACGAAATTGTCCCATTTTGTTTCC-----AATGGAAAC-GACAGCTTAG-AAGCCGA-TTCCGCAATATGT-----TTC--ATTG--TTATATGA--TAGTACGAG----TCTAATGCA-TG-T-TGATTA-CACGCAT-TCAA----AT-ATTTT--CAA--GCTGGGTG---GG-ATA-ATTGTTTACCCA--A--ATTC-AACATGT-TGCCTTT-AAAAT-GCT-TTT-TA---GAAT-TGTCAGA---A-TAC-ACCTC-TTT---TCAAGACAGAA-T-AA---gttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgtataccagataacagctgagagattttgaaattaaattttataatatagttttgaaaattctagaacactaaaaagcatagtcgtataaaaattgtcatgtgttttacattggttataaaatgcctctttttatgtcgaagcagtcagtggactgcgtggttacatgatggacaggttgctaacacaattatgagatggttctacgttactaacaggaagttaagtgatgtttcaaattttggagaatcgggtgattgggttgcgtgccggaccccttacataaatgtttaagtggttacagagaatggctcttaagtacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|3 : tattgaagaatccttttcatttctatatAATTTAAAAA---GAAGCAACA--AT-TTTCGTTTC-----CA--TGACA---TTAATTCTC--ATA-----TCAAAT-TTGCT--A------T-AAA--TAATGATCAATAGCAG-TT-ACTT-TCAAGATAA-TATACTTTGA-TTTCAAAT-AAAATT--GT--ATTTA--AA-TTGCGTTG-AAATATATATGCACCTCTGC---TGTC--ACATCACAACGAAA-TGTATCATTTTGTTTCT-----ATGG-AAACAA--AGCTTAAAAGATAGAATCCCA-AATATGT-----TTC--ATTG--TTATATGA--TAGTACTAGG---TCCAACGCA-TGTT-GA---A-CAAGCA-----------------T--CAA--GCTGTATGGGGGG-A---GTT-TTTATCCA-T--TATTT--AT---T-TGCCCCTAAAAATAGCTGTTT-TA---GAATGTATC--AC--A-TTT-TCCTC-TTT-TGCTGACAGA-AA-T-AA---AC--TA-TG--ATAGAAATATTCAAA--CCAAT-AATTAAA---TAT----------A-AAA-CT-A--AGC-A-ATAA-A-A-A---TAC---TA-----AAA-A-TTAATA-TTTCATA---ATGAT--ATATTTT-T---AATC---AAACAGC-TAAAATAATCA-TA-TTTG-A--T---TAAAAA-----TTGT--CATTTTCAT---TTA-AAA-ATTGCC-TCT-TT-TG-TGA-CCTGAATGA------TA-TGCAA-GTGT---TAC----CAT--GGCAACAAAGTTGCCTA-GCAACC--A-AATTATGA--T--GAT-TGTACG-TTACTAA-TGGG-AAATTAAGT-CGATGT-CCCGAATTTG------AGA-ATCG----G-TGA--A--GG---------TGC-GTGCCAGA---CCC
gi|10 : actgatttcgTTGATTTT--TGAAAAGCAACAATTTTCATT-TCC-ATGGGAACTGAAAT-TTGTT--A-TACTTA-AAAGTTAGCAT-CAACAGGAG-TTAGTTA-TCAAGATAG-CATAAATAGA-TTTCAAAT-AAA-TTT-GT--ATTTTA-AA-CTGCTTTGAAA---TGT----ACAACTGA-ACTGTT--AAGTCACGATGAAA-TGCATCGTTTTGTTTCC-----ATAG-AAAC-AC-AATTTAGAAc
gi|6 : tattctgcgtcaTT--TGATA------G-TACGAGG---TATAATGCA-TGTT-GA---A-CAAGCAT-AC-ATATAATTA-TTT--CAAAAG-TGAGT----GGGAGA-ATTTTCCACCCATCA--ATTC-AAT---TGTGTCTCTAAAAgcc
gi|9 : -AAT---T-TGTCTTTAAAT-TAGCT-TTT-AA---TAATGTATC--A---AATGCGCA-TC-TTT-TGGAAACAAA-AA-T-AA---ACTACG-AG--A--GAAATATTCAAA--CTGAC-AAtttcagacagacagaaacgttcaaactcataaatatatatacatgtatcaaactaaacactaaaagtacattgtagctagaaataacaatttataatgatatttcatgcaatcaaacaactaaaatcagcatattcgactaaaattgtcattgttatgttaaaattgcatttatttttacctcagtgtcatgcacgtgttgccatggaaacagagcttcctagcaaccaatcacgattgttctgcgttaactttgagaaaattatccttgtgtcaaatttgaaaaatgtcggtaacggtgcgtgccggatccctgatttagttttgttaagtgatcaca
gi|7 : atactgggtttaatgcatgtttaaca-TGTC--A---AATAC-CCCTC-TTT---TCAAGAGAGAA-TTAA---AT--TA-TG--ACAGAGATATTC-AAA-CCCAT-AACT--AAA-TGT----------CCAAA-CT-A--AACGA-CT-A-G-A-A---AAT---TG-----AAA-AATTAACA-TTT--TATAAAT--G--ACTTTTTATGAAA--T---AAACGACT--AAACCAGCA-TA-T-CGTA--T---AAAGAA-----ATGTCCATTTTTTCT--GTTA-AAAAA-TGCC-TCT-TT-TTGTGAACCTCAGTGA-------A-TGCAC-GTGT---TAA----C-CATGGCAACAGGGTTGCCTA-GCAA-C--C-GATCATGA--G--G-T-T-TACG-CTACTTA-CGGG-AAGTTAAGT-CGATGT--CAAAGTTTG--AG-AAAA-ATCG----G--GA--T--GG---------TGCTGTGCCGGAACCCCCTGA--TAGGGTTA---A--ATGGTTTA--AGTGG-TTAG--CAG-AG--ATGGCTGCTTGAgaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
gi|11 : C--A---A-AAC-CAATCGTTT-CA--AGAAGAGAAAT-AACCCATAAC--------AGGAATATTC-AAACCCTATTAACT--ACAATGT----------C-AAAACT-ATAA-C-A-CT-AAG-A-A---TATGGTTG-----AAACA-TGAACA-TTTA-TA---AT--G--ATATTTTAT-CAAATCG--AAGCAAC-TGAAACTAGCATTA-TTCGGA--TTTAGAAAAA-----ATGTC-ATTTT
gi|6 : c-AGAAACGTTC-AAA-CTCAT-AAAT--A---TATATACATGTATC-AAA-CT-A--AAC-A-CT-A-A-A-AGTACAT---TGTAGCTAGA-A-ATAACAATTTA-TA---AT--G--ATATTTCATGCAA-TC---AAACAACT-AAAATCAGCA-TA-TTCGAC--T---AA--AA-----TTGTC-ATTGTT-AT--GTTA-AAA-T-TGCA-TTTATT-T--TTACCTCAG-TGT------CA-TGCAC-GTGT---TGC----CAT--GGAAACAGAGCTTCCTA-GCAA-C--C-AATCACGAT-T--G-T-TCTGCGTTAACTTT-GAGA-AAAT--TATCCT-TGTGTCA-AATTT----GAAAAATGTCG----G-TAA--C--GG---------TGC-GTGCCGGAT--CCCTGA--TT----TA---GTTTTG--TTA--AGTGA-TC-A--CA
gi|1 : tttgatagtacgaggtataatgcatgttgaacaagcatacatataattatttcaaaagtgagtgggagaattttccacccatcaattcaattgtgtctctaaaatttcagacagacT--A---TAC----------C-AGA--T-A--A-C-AGCTGA-G-AGA---TTT---TG-----AAA---TTAA-A-TTT--TAT--AA--T--ATAGTTT-TGAAAATTCTAGAAC-ACT-AAAA--AGCA-TA-GTCGTA--T---AAA-AATTGTCATGT--GTTTTACATTGGTTATAAA-A-TGCC-TCT-TT-T--TA--TGT---CGAAGCAGTCAGTGGACTGCGTGGTTACATGAT-G--GACA----GGTTGCT-----AA-C--ACAATTATGAGAT--GGT-TCTACGTT-ACTAA-CAGG-AAGTTAAGTG--ATGTTTCAAATTTTGG-----AGA-ATCG----GGTGA--TTGGGT--------TGC-GTGCCGGA---CCCCTTA-CA----TA---A--ATG--TTTA-AGTGGTT--A--CAGAGA--ATGGC-TCTTAAG
gi|8 : tgaaatcctttcatttcaacaatcattgatcattgtggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtatattcagcaccaataaatttcaaatttggaaatttacgattttcgtttccatggcaaccaacattaattcttatatcaaatttgttatgatctaaagataacatcattaggagtcagttatcaagataatatattttgatttcaaataaatttgtattataaattgcattgaaatgtaccatctgaactgccaaacgacaatatattttgttttcctatggaaaacagcttagaagccagatcccacattgttttttcagttatgtagtgatctgattgagtactatgaggtctatgcaatgttgtgcaagatgtcaaaatttttcaagctgggtggagcgattttatacccaaattgtttgattatgccttaaagggggttttctatgctaatgtcaaatataccttcatttacaagagaaaaactaaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgAA-T-TTGACA-TTT--TATA-AG--TGAATATTTAATGAGA--T---AAACAACTAAAAACCAGCA-TAATTCG-------------------ATTTTAATTTTTCATC-GTTA-AAA-A-TGCCCTCT-TTAG--TGACGCTAG-TGA------CT-CAC---GTGT---TAC----G-CATGGCAACAGGGTTGC-TAG-CAA-CC-A-AATCATGA--TTGG-T-TCTAGGTTACCTAAATGGT-AAATTAAGTCG-ATGTTGCAAA--TTG--AGAAAAA--TCG----A-TGA--C--GGT---------GC-GTGCTGGA---CCCCTTAATA----TA---A--ATT--TTA--AGTGG-TTAG--CAG-GAGAATGGC-TCTTAACTCacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|15 : ACGACT-AAAACCAGCA-TA-TTCATA--T---AAA-AA-----ATGCC-ATTTTTCAT--GTTA-AAA-T-TGCC-TCT-TT-TTGTGACCTCAG-TGG------CA-TGCAC-GTGT---TAC----CAT--GGCAACAGGGTTGtttcatcaagtttgtaaagaaaaattttcatagcatatgtaaattggaaa
gi|12 : -TGTC-TCT-TT-TC-TGAC--T---TGAATGG--CA-TGCACC-CGT---TA-----T-CATGGCAACAGAGGTGCCTAG-CAA-CCAA-AAT-ATGG--T--G-GATTTACATT-ACTAA-TGGGGAAAT--AAATCAATGTGCCA-AATTTG--AGAAAAA--TCG----G-ACA--C--GGT---------GC-GTGCCGGA---CCCC-T--TA----TA---
gi|14 : AAAA-ATCGAGATG-TGAACT--GGTAGAGACGTTGC-ACGTGGAG---TCCT-T--TA----TATAAA--ATG--TTTA-AGTGG-T--ATACAA-GA--ATGGC-TCTTAAtaa
gi|17 : gagTGCCAAA---CCCCTTA-TA----TA---A--ATG--TTTTAAGCGGTT--A--TAGAGA--ATTACTCTTTAAAtttcgttacccaaagaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACTGAGCGAAAAGTATGACTGCAACCCCATTTTGTGTTTCATGAAAACGACAGGGCTTAGAAGTCCAGATGGCGGTCCAAATGACATGTTTCATCTGTCCTAATATGGATAGTACATGAGGTGTCCTAATGCAATATGTTAGATC
Unaligned ( gi|16 ): AAATTGCACCTTACCTGACCTGAAAAACATGCGTGTGATACAATCACACAATAGGTGCGTTGCAACCAAATCATGGTAGTTTCACAATACTTATAGGAACTTAAGT
Alignments
lowQualScore : 1 1 11 1 1 5555555555555555555555555555555555555555555555555 1 111 1 2222 111 1 11 22222222 1 222222 11111 1111 11111 111 111111 222222222222 2222222 11 11111 1111 1 11 1 3333 11 33333333 1 1 3333333333333333333 1 111 111 11111 111 22222 111111 11111 1111 11 11 1111111111 11111 333333 1111 11111 2222 11111 11111 22 1111 22 1 1
lowQualScore : 0 0 33 2 3 1 0 1 2 0 1111111111111111111111111111111111111111111111111 1 9 0 1 111 3 2 6 3 2 2222 6 6 111 6 6 6 1 1 6 66 6 6 6 99 7 6 7 44444444 6 99 1 6 3 5 77 5 0 1 0 77 66 000000 99 5 6 6 6 66666 3333 5 77 55555 5 888 333 333333 6 666666666666 6 99 1 77 3 1 4444444 55 44444 1 5 5 3 6 6 4444 1 66 5 0 66 5 0000 55 5 33333333 2 1 6 0000000000000000000 5 5 77 5 5 1 666 5 000 000 44444 000 5 33333 5 5 0 88 111111 4 4 4 55 4 4 8888 11111 8 1 4 4 777 5555 66 4 00 4 8 4 5555555555 777 33333 4 0 4 7 999999 4 8 1111 66 77777 8 4 3 4 777 66 4 7777 99999 66 9 5 22 44444 66 00 5 66 5 0000 5 66 77 66 5 1 5 5 1
lowQualScore : . . .. . . . . . . . ................................................. . . . . ... . . . . . .... . . ... . . . . . . .. . . . .. . . . ........ . .. . . . . .. . . . . .. .. ...... .. . . . . ..... .... . .. ..... . ... ... ...... . ............ . .. . .. . . ....... .. ..... . . . . . . .... . .. . . .. . .... .. . ........ . . . ................... . . .. . . . ... . ... ... ..... ... . ..... . . . .. ...... . . . .. . . .... ..... . . . . ... .... .. . .. . . . .......... ... ..... . . . . ...... . . .... .. ..... . . . . ... .. . .... ..... .. . . .. ..... .. .. . .. . .... . .. .. .. . . . . .
lowQualScore : 0 0 88 0 2 0 0 8 5 8 2222222222222222222222222222222222222222222222222 0 8 0 0 777 7 2 7 3 5 3333 7 7 777 7 7 7 7 7 7 55 7 7 7 22 8 7 3 55555555 7 22 7 7 2 7 99 7 1 4 7 99 77 222222 22 2 7 7 7 77777 5555 7 99 88888 0 888 888 444444 7 888888888888 7 22 0 77 2 0 5555555 77 66666 7 0 7 7 7 7 2222 4 99 0 0 44 0 0000 88 7 00000000 0 3 7 6666666666666666666 7 7 11 7 7 4 000 7 000 000 33333 444 0 00000 0 0 4 66 111111 4 4 4 33 4 4 0000 33333 0 2 0 0 000 6666 99 4 33 0 0 0 8888888888 000 33333 0 8 0 8 777777 4 9 3333 11 44444 9 4 7 4 888 11 2 1111 11111 99 4 0 44 11111 99 55 0 11 0 6666 0 99 11 77 7 4 7 5 0
consensus : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCGTTC-C-ATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---A-TGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----GTN---ATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTCA-A-A-TAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTT-TAT-AA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TGCC-TCT-T-T-T--T-----G---ACCT---CAGTG-ACATGCAC-GTGTTAC---C-CATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----T-AA--ATGT-TT-AAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
Reference ( family-1985 ) : CAACAATCATTG-AT-CATT--GCGGAAGACNTCC-TGATATAATANATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTG-TTGTNTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCGTTT-C-ATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---A-TGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GTATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-NCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----GTT---ATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGAGNATTNTTTACCCA-A--T--ATTC-GAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTC--A-A-TAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACGACGTGA-AGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTT-TAT-A--TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TGCC-TCT-T-T-T--T-----G---ACCC---TAGTG-ACATGCAC-GCGTTAC---CACATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAATTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----T-AA--ATG--TT-NAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
gi|1 : CAACAATCATTG-AT-CATT--GTGGAAGANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTATATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---TTACGATTTTCGTTTCC-ATGGCAACCAACATTAATTCT-TA-TATCAAA-T-TTGTT---A-TGATCT-AAA-GATAACA-TCATTAGGAGTCAGTTAT-CAAGATAA-TATATTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTG-AA-ATG--TAC-CATCTGA-ACTGCC--AA---ACGAC--AAT-AT---ATTTTGT-TTTCCTA-TGGAAA--ACAG--CTTAGAAG-CCAGA------TCC-CACATTGTTTTTTCAGT-TATGTAGTG---ATCT-GATTGAGTAC-TATGAGG-T---CT-ATGCA--ATGTTG-TG--CAAG-ATGTCAAA-A----TTTTT-C--AAGCTGGGTGGAGCGATTTTATACCCA-AATT--GTTT-GAT---TATGCCT-TAAAGGGGGTT-TTC-TATGCTAA--TGTCA-A-A-TATACCTTC-ATTTAC-AAGAGAA-AA
gi|1 : tgaaatcctttcatttT--A---TAC----------C-AGA-T---AAC-AGCTGA-G-AGA---TTT---TG-----AAA---TTAA-ATTT-TAT-A--ATA-TAG-TTT-TGAAAATTCTAGAA-C-AC-TAAAA---AGCA-TA-GTCGTA--T----AAA-AATTG-TC-ATGTGTTTTA---CATTGGTTATAAAA-TGCC-TCT-T-T-T--TATGTCG---AAGCAGTCAGTGGAC-TGCGT-G-GTTAC---ATGATGG--ACAGG-TTGCT-----AA-C--ACAATTA--TGAGAT--GGT-TCTACG-TTA---CT--AACAGGAAGTTAAGT----GATGT-T-TCAAATTTT--GGAGA-A--TCGGGT---GATTGGGT-TGC-GTGCCGGA--CCCCTT-ACA----T-AA--ATGT-TT-AAGTGGT-TA-CA-GAGAATGGC-TCTTAAGactaaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgtataccagataacagctgagagattttgaaattaaattttataatatagttttgaaaattctagaacactaaaaagcatagtcgtataaaaattgtcatgtgttttacattggttataaaatgcctctttttatgtcgaagcagtcagtggactgcgtggttacatgatggacaggttgctaacacaattatgagatggttctacgttactaacaggaagttaagtgatgtttcaaattttggagaatcgggtgattgggttgcgtgccggaccccttacataaatgtttaagtggttacagagaatggctcttaagtacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|10 : tgaaatcctttcatttcaacaatcattgatcattgtggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtatattcagcaccaataaatttcaaatttggaaatttacgattttcgtttccatggcaaccaacattaattcttatatcaaatttgttatgatctaaagataacatcattaggagtcagttatcaagataatatattttgatttcaaataaatttgtattataaattgcattgaaatgtaccatctgaactgccaaacgacaatatattttgttttcctatggaaaacagcttagaagccagatcccacattgttttttcagttatgtagtgatctgattgagtactatgaggtctatgcaatgttgtgcaagatgtcaaaatttttcaagctgggtggagcgattttatacccaaattgtttgattatgccttaaagggggttttctatgctaatgtcaaatataccttcatttacaagagaaaaactaaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgTTTGAAAAG---CAACAATTTTCATTT-CCATGGGAAC-------------------TGAAA-T-TTGTT---A-TACTTA-AAA-GTTAGCAT-CAACAGGAGTTAGTTAT-CAAGATAG-CATAAATAGA-TTTCAAATAAA-TTTG-T--ATTTT-AAACTGCTTTGAAA--TGT----ACAACTGA-ACTGTT--AAGTCACGATGAAAT-GCATCGTTTTGT-TT--CCA-TAGAAAC-ACAA--TTTAGAAG-CCacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|11 : tattctgcgtcattgattC--A-A-AAC-CAATCGTTTCAAGAAGAGA--AAT-AACC--CATAACAGGAATATTCAAACCCTATTAACT--ACAATGT----------C-AAAACTATAAC-A-CT-AAG-A-A---TATGGTTG-----AAACA-TGAACATTTATA--A--TGA-TAT-TTTAT-CAAATC---GAAGCAAC-TGAAA-CTAGCATTA-TTCGGA--TTTAGAAA-AAATG-TC-AT---TTT
gi|12 : c-TGTC-TCT-T-T-TC-T-----G---ACTT---GAATG-GCATGCAC-CCGTTAT---CA--TGGCAACAGAGGTGCCTA-GCAA-CCAA-AAT-A--TGG--T--G-GATTTACA-TTA---CT--AATGGGGAAATAAATC---AATGT-G-CCAAATTTG--AGAAA-AA-TCGG-A---CAC--GGT--GC-GTGCCGGA--CCCCTT-ATA----T-AA--
gi|13 : CATTTTGTGTT--TCA-TGAAAACGACAGGGCTTAGAAGTCCAGATGGCGGTCCAAATGACA-TGTTTCA-TCT-----GTCCTAATATGGAT--AGTACATG--AGG-TGTCCTAATGCAATATGTT--AGA-
gi|14 : actgagcgaaaagtatgactgcaacccAAAAATCG--AGATGTGAACTGG-TAGAGAC--G-T-TGC-ACGTGGAG--TCCTTT-ATA----TAAA--ATGT-TT-AAGTGGTATA-CA--AGAATGGC-TCTTAATtc
gi|15 : gagA-CGAC-TAAAA-CCAGCA-TA-TTCATA--T----AAA-AAATG-CC-AT---TTTT----CAT--GTTA-AAAT-TGCC-TCT-T-T-TTGT-----G---ACCT---CAGTG-GCATGCAC-GTGTTAC-----CATGGCAACAGGGTTGtcgttacccaaagaaa
gi|16 : -AAAT-TGCA-CCT-TAC-C--T-----G---ACCT---GAAAA-ACATGCGT-GTGATACAATCACA---CAATAGG--TGCGTT-GCAA-CC-A-AATCA--TGG--TA-G-T-TTCACA-ATA---CT--TATAGGAACTTAAGT
gi|17 : TGCCAAA--CCCCTT-ATA----T-AA--ATGTTTT-AAGCGGT-TA-TA-GAGAATTACTCTTTAAA
gi|2 : CAACAGTCACTGGAT-CACT--GTGAAAGACATTC-TTATATATTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCTG-TTATCCA--CAGCACCA-ATAAATTTAAAATT--GAAAT---TAA--ATTTTCATTC-C--TGGCAACCAACATTAATTCTCTA-TATCAAA-TCTTGTT---AATGATCT-AAA-GATAACATTCAATAGGAG-CTGTTAT-CAAGATA--TATACTTTG--TTTCAAATAAA-TT-G-T--ATTTT-AA-TTCCATTGAA---TGT-TACACAACTGA-A-TGCC--AAATCACGACGAAAT-GCATCATTTT-T-TT--CCA----GAAC-A-AG--CTTAGAAA-GCAGAT-----TTC-CACAACA-TGTGTTA-T-T-----TTA---ATAT-GAG--A-TAC-T---AGGAT---CTAATGC----TGCT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGCGT-GGATCATTATTTACCCACA--C--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TG-T--AAT-TGTC--A-A-TAC-CACTC-TTTCATAAGGAGAG-AAT-AAATGATGTGA-AGAGATATTC--AACCCAC-AACT--A---TGT----------C-AAA-CT--AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTT-TA--A--TTA-TAT-TTTATGAAAATC---AAA-CGACTTAAAA-TCAGCA-TA-TTCGTA--T----AAACAAATG-T--AT---TTTT----CAT--GTTA-AAAA-TGCC-TCT-T-T-T--T-----G---ACCC---T--TG-ACACGCACTGTGTTAC---T---CGGCAA-AGGGTTGCCTAGGCAA-C--A-AATCA--TGA--T--G-T-TCTACGTTTA---CT--AACGGGAAGT--AGTCC--TATGTGC-CAGAATTTGGCAGAAA-AAATCGG-T---GAT--GGTCTGC-GTGCCGGA--CCCTGT--TA----T-AA--ATG--TTATAGTGG--TA-CA-G-GAATGGCTTCTTAAATCatgagtcaatttggaatc
gi|3 : ATTTCGAATTTAAAAAGAAGCAACAATTTTCGTTT-CCATG-------ACATTAATTCTC-A-TATCAAA-T-TTGCT---A-TAA---------ATAATGATCAATAGCAGTTACTT-T-CAAGATAA-TATACTTTGA-TTTCAAATAAA-ATTG-T--ATT-T-AAATTGCGTTGAAATATATATGCACCTCTG---CTGTC--ACATCACAACGAAAT-GTATCATTTTGT-TT--CTA-TGGAAAC-AAAG--CTTAAAAG-ATAGAA-----TCC-CA-AATA-TGTTTCA-T-T-----GTT---ATAT-GAT--AGTAC-T---AGG-T---CCAACGC---ATGTT--GAA-CAAGCA-----------------T-C--AAGCTGTATGGGGGGAGTTTTTATCCA-T--T--ATTT--AT---T-TGCCCCTAAAAATAGCTGTTT-TA-G--AATGTATC--ACA-TTT-TCCTC-TTTTGCTGACAGA--AAT-AAACTA--TGATAGAAATATTC-AAACCAAT-AATTAAA---TAT----------A-AAA-CTA-AGC-A-ATAA-A-A-A---TAC---TA-----AAA-A-TTAATATTT-CATAA--TGA-TATATTTTT---AATC---AAA-CAGC-TAAAA-TAATCA-TA-TTTGAT--T----AAA-AATTG-TC-A----TTTT----CAT---TTA-AAAATTGCC-TCT-T-T-TG-T-----G---ACCT---GAATG-ATATGCAA-GTGTTAC-----CATGGCAACAAAGTTGCCTA-GCAACC--A-AATTA--TGA--T--GAT-TGTACG-TTA---CT--AATGGGAAATTAAGT-C--GATGT-C-CCGAATTTG--AG-----AATCGG-T---GAA--GG--TGC-GTGCCAGA--CCCC
gi|4 : actgCAACAACCATTG-AT-CATT--GCGAAAGACTNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTTTATTCAGCACCA-ATAAATGTCAAATTTTGAAAT---CAACGATTTTCATTC-C-ATGGCAACCAACATTAATCCT-TA-TATCAAA-T-TTGTT---A-TGATTTTAAA-GATAACA-TCAAT--TAGTCAATTAT-CAAGATAATTATACTTTGA-TTTCAAATAAA-TTTG-TTAATTAT-AAATTGCACTG-AA-ATGT----ACCACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGG-AAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CAACATG-TTTTTCA-T-T-----GTT---ATAT-GAT--AGTAC-T---AGG-T---CTAATAA---ATG-T--TGATCAAG-AT-TC--A-A----TATTT-C--ATGCTGGGTGGGATAA-TGTTTACCCA-A--C--ATTCAAAT---C-TGCTTCT-AAACTGGCT-TTTATA-G--AAT-TGTCA-A-A-TAC-ACCTC-TTT-GC-AAGAGAGAAAT-AACC--CATGACAGGAATATTC-AAACCCAT-AACTAAA---TGT----------C-AAA-CTA-AAC-A-CT-A-GAA-A---TGT---TG-----AAA-A-TGAACATTT-TATAA--TGA-TAT-TTTATG-AAATC---GAA-CAAC-TGAAA-CTAGCA-TA-TTCGGATTT----AAA-AAATG-TC-AT---TTT
gi|5 : attgaaatcctttcatttACAGTCATTG-ATGCATTTTGTGGA-GACATCCATGATATAATA-ATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGTTTAATCAGCACTATAGAAATTTCAAATTTGGAAAT---CAACCATTT-CTTTC-C-ATGGCAACCAACATTAATTTTTTCCTGTCAAAAT-TTGTTTGTA-TAATTT-AAAAGATA-CATT-AATAGGAGTCAGTTATTCAAGATA--TATACTTTGACTTTCAAATAAAATTTGGT--ATTATGAAATTGCATTGAAA--TGT--ACA-AACTGACACTGCTCGAAATTACGACGAAATTGTCCCATTTTGT-TT--CCAATGGAAACGACAG--CTTAGAAG-CC-GAT-----TCC--GCAATA-TGTTTCA-T-T-----GTT---ATAT-GAT--AGTAC-G---AG--T---CTAATGC---ATGTTGATTA-CACGCAT-TC--A-AA---TATTTTC--AAGCTGGGTGGGATAATTGTTTACCCA-A-----ATTC-AACATGT-TGCCTTT-AAAAT-GCT-TTT-TA-G--AAT-TGTCAGA-A-TAC-ACCTC-TTT--TCAAGACAG-AAT-AA
gi|6 : tattgaagaatccttttcatttctatatT-GAT--AGTAC-G---AGG-T---ATAATGC---ATGTT--GAA-CAAGCAT-AC--ATATAATTATTT-CAAAAG-TGAGTGGGAGAATTTTCCACCC--A--TCAATTC-AAT---TGTGTCTCTAAAA
gi|6 : tt-AGAAACGTTCAAA-CTCAT-AAAT--A---TATATACATGTATC-AAA-CTA-AAC-A-CT-A-A-A-AGTACAT---TGTAGCTAGA-A-ATAACAATT-TAT-AA-TGA-TAT-TTCATGCAA-TC---AAA-CAAC-TAAAA-TCAGCA-TA-TTCGAC--T-----AA-AATTG-TC-AT---TGTT-----AT--GTTA-AAAT-TGCA-TTTAT-T-T--T-----T---ACCT---CAGTG-TCATGCAC-GTGTTGC-----CATGGAAACAGAGCTTCCTA-GCAA-C--C-AATCA--CGAT-T--G-T-TCTGCG-TTAACTTT--GA--GAAAATTA--TCCTTG-TGT-C---AAATTTG--A-AAA-ATGTCGG-T---AAC--GG--TGC-GTGCCGGA--TCCCTG-ATT----T-AGTTTTG--TT-AAGTGAT-CA-CA-tttcagacagacagaaacgttcaaactcataaatatatatacatgtatcaaactaaacactaaaagtacattgtagctagaaataacaatttataatgatatttcatgcaatcaaacaactaaaatcagcatattcgactaaaattgtcattgttatgttaaaattgcatttatttttacctcagtgtcatgcacgtgttgccatggaaacagagcttcctagcaaccaatcacgattgttctgcgttaactttgagaaaattatccttgtgtcaaatttgaaaaatgtcggtaacggtgcgtgccggatccctgatttagttttgttaagtgatcaca
gi|7 : tttgatagtacgaggtataatgcatgttgaacaagcatacatataattatttcaaaagtgagtgggagaattttccacccatcaattcaattgtgtctctaaaatttcagacagac-TGTC--A-AATAC-CCCTC-TTTT--CAAGAGAG-AATTAAATTA--TGACAGAGATATTCAAA-CCCAT-AACT--AAA-TGT----------CCAAA-CTA-AACGA-CT-A-G-A-A---AAT---TG-----AAA-AATTAACATTT-TAT-AAATGA-CTT-TTTATGAAA--T---AAA-CGAC-TAAA--CCAGCA-TA-T-CGTA--T----AAAGAAATG-TCCAT---TTTT----TCT--GTTA-AAAAATGCC-TCT-T-T-T--T-----GTGAACCT---CAGTG-A-ATGCAC-GTGTTAA---C-CATGGCAACAGGGTTGCCTA-GCAA-C--C-GATCA--TGA--G--G-T-T-TACG-CTA---CT--TACGGGAAGTTAAGT-C--GATGT---CAAAGTTTG--AG-AA-AAATCGG-----GAT--GG--TGCTGTGCCGGAACCCCCTG-ATAGGGTT-AA--ATGGTTT-AAGTGGT-TAGCA-GAG-ATGGCTGCTTGA
gi|8 : AA-T-TTGACATTT-TAT-AAGTGAATAT-TTAATGAGA--T---AAA-CAAC-TAAAAACCAGCA-TAATTCG-A--T-----------TT-TA-AT---TTTT----CATC-GTTA-AAAA-TGCCCTCT-T-TAG--T-----G---ACGC---TAGTG-AC-T-CAC-GTGTTAC----GCATGGCAACAGGGTTG-CTA-GCAACC--A-AATCA--TGA--TTGG-T-TCTAGG-TTA---CCTAAATGGTAAATTAAGT-C--GATGT-TGCAAA--TTG--AG-AA-AAATCGA-T---GAC--GG--TGC-GTGCTGGA--CCCCTTAATA----T-AA--ATT--TT-AAGTGGT-TAGCAGGAGAATGGC-TCTTAACTC
gi|9 : TAC-T---GGG-T---TTAATGC---ATGTT--TAA-CAAtttcatcaagtttgtaaagaaaaattttcatagcatatgtaaattggaaa
gi|9 : aAT---T-TGTCTTTAAAT-TAGCT-TTT-AA-T--AATGTATC--A-AATGC-GCATC-TTTTGGAAACAAA--AAT-AAACTACGAGA--GAAATATTCAAAatttgtctttaaattagcttttaataatgtatcaaatgcgcatcttttggaaacaaaaataaactacgagagaaatattcaaactgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
gi|9 : atactgggtttaatgcatgtttaacaa-AAATGGTC-AT---TTTTTGGGCATA-GTT-------T-CC-TCTAT-T-G--T-----G---ACTG---TTTTG-ATATTTAC-ATTTTAT---CG--TCGCAACGAAGGTGCATA-GCAA-C--A-AAACAATTG------G-T-TTTGCA-TCA---CT--AActgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
Alignments
lowQualScore : 1 1 11 1 1 1 111 1 2222 111 1 11 1 1 11 222 1 222222 222222222 11111 111 111111 222222222222 2222222 11111 1111 1 2222 11 1111 1 1 3333333333333333333 1 111 111 11111 111 1 111111 11111 1111 11 11 1111 111111 222222 1111 11111 2222 11111 11111 22 1111 111 1 1
lowQualScore : 0 0 33 3 0 1 1 8 1 0 1 9 0 1 111 3 88 3 2 2222 6 6 888 6 6 1 1 6 88 6 00 6 99 1 6 5 44 333 6 99 1 6 5 77 5 0 1 0 77 5 000000 99 5 6 6 6 222222222 1 5 77 55555 5 888 333 333333 6 666666666666 6 99 1 1 3 1 4444444 55 44444 1 5 5 3 6 6 4444 1 5 66 5 5555 33 5 9999 3 2 1 6 0000000000000000000 5 5 77 5 5 1 666 5 000 000 44444 000 5 0 5 5 0 88 111111 4 4 4 55 4 4 8888 11111 8 1 4 4 777 5555 66 4 00 4 8 4 4444 888888 55 2 4 0 4 000000 4 8 1111 66 77777 8 4 3 4 777 66 4 1 7777 99999 66 9 5 22 44444 66 00 5 66 5 0000 5 222 5 5 1 5 5 1
lowQualScore : . . .. . . . . . . . . . . . ... . .. . . .... . . ... . . . . . .. . .. . .. . . . .. ... . .. . . . .. . . . . .. . ...... .. . . . . ......... . . .. ..... . ... ... ...... . ............ . .. . . . . ....... .. ..... . . . . . . .... . . .. . .... .. . .... . . . . ................... . . .. . . . ... . ... ... ..... ... . . . . . .. ...... . . . .. . . .... ..... . . . . ... .... .. . .. . . . .... ...... .. . . . . ...... . . .... .. ..... . . . . ... .. . . .... ..... .. . . .. ..... .. .. . .. . .... . ... . . . . . .
lowQualScore : 0 0 88 2 0 0 0 2 0 0 2 8 0 0 777 7 88 3 5 3333 7 7 333 7 7 7 7 7 33 7 22 7 22 7 7 5 00 777 7 22 7 7 7 99 7 1 4 7 99 7 222222 22 2 7 7 7 555555555 0 7 99 88888 0 888 888 444444 7 888888888888 7 22 0 5 2 0 5555555 99 66666 7 0 7 7 7 7 2222 4 0 44 0 1111 88 0 3333 0 0 3 7 6666666666666666666 7 7 11 7 7 4 000 7 000 000 33333 444 1 0 0 0 4 66 111111 4 4 4 33 4 4 0000 33333 0 2 0 0 000 6666 99 4 33 0 0 0 8888 555555 55 3 0 8 0 000000 4 9 3333 11 44444 9 4 7 4 888 11 2 1 1111 11111 99 4 0 44 11111 99 55 0 11 0 6666 7 111 7 7 4 7 5 0
consensus : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCG-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTCA-AATAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTTTATAA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--TCAGTG-ACATGCAC-GTGTTAC--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
Reference ( family-1985 ) : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCG-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTCA-AATAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTTTATAA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--TCAGTG-ACATGCAC-GTGTTAC--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
gi|1 : CAACAATCATTG-AT-CATT--GTGGAAGANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTATATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---TTACGATTTTCGTTT-CCATGGCAACCAACATTAATTCT-TA-TATCAAA-T-TTGTT---ATGATCT-AAA-GATAACA-TCATTAGGAGTCAGTTAT-CAAGATAA-TATATTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTG-AA-ATG--TAC-CATCTGA-ACTGCC--AA---ACGAC--AAT---AT-ATTTTGT-TTTCCTA-TGGAAA--ACAG--CTTAGAAG-CCAGA------TCC-CACATTGTTTTTTCAGT-TATGTAG---TGATCT-GATTGAGTAC-TATGAGG-T---CT-ATGCA--ATGTTG-TG--CAAG-ATGTCAAA-A----TTTTT-C--AAGCTGGGTGGAGCGATTTTATACCCA-AATT--GTTT-GAT---TATGCCT-TAAAGGGGGTT-TTC-TATGCTAA--TGTCA-AATATACCTTC-ATTTACA---AGAG-AA--AAACTA
gi|1 : tgaaatcctttcatttT--A---TAC----------C-AGA-T---AAC-AGCTGA-G-AGA---TTT---TG-----AAA---TTAA-ATTTTATAA-T-A-TAG-TTT-TGAAAATTCTAGAA-C-AC-TAAAA---AGCA-TA-GTCGTA--T----AAA-AATTG-TC-ATGTGTTTTA---CATTGGTTATAAAA-TG-CCTCT-T-T-T--TATGTCGAAGCAGTCAGTGGAC-TGCGT-G-GTTAC--ATGATGG--ACAGG-TTGCT-----AA-C--ACAATTA--TGAGAT--GGT-TCTACG-TTA---CT--AACAGGAAGTTAAGT----GATGT-T-TCAAATTTT--GGAGA-A--TCGGGT---GATTGGGT-TGC-GTGCCGGA--CCCCTT-ACA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGC-TCTTAAGaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgtataccagataacagctgagagattttgaaattaaattttataatatagttttgaaaattctagaacactaaaaagcatagtcgtataaaaattgtcatgtgttttacattggttataaaatgcctctttttatgtcgaagcagtcagtggactgcgtggttacatgatggacaggttgctaacacaattatgagatggttctacgttactaacaggaagttaagtgatgtttcaaattttggagaatcgggtgattgggttgcgtgccggaccccttacataaatgtttaagtggttacagagaatggctcttaagtacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|10 : tgaaatcctttcatttcaacaatcattgatcattgtggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtatattcagcaccaataaatttcaaatttggaaatttacgattttcgtttccatggcaaccaacattaattcttatatcaaatttgttatgatctaaagataacatcattaggagtcagttatcaagataatatattttgatttcaaataaatttgtattataaattgcattgaaatgtaccatctgaactgccaaacgacaatatattttgttttcctatggaaaacagcttagaagccagatcccacattgttttttcagttatgtagtgatctgattgagtactatgaggtctatgcaatgttgtgcaagatgtcaaaatttttcaagctgggtggagcgattttatacccaaattgtttgattatgccttaaagggggttttctatgctaatgtcaaatataccttcatttacaagagaaaaactaaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgTTTGAAAAG---CAACAATTTTCA-TTTCCATGGGAAC-------------------TGAAA-T-TTGTT---ATACTTA-AAA-GTTAGCAT-CAACAGGAGTTAGTTAT-CAAGATAG-CATAAATAGA-TTTCAAATAAA-TTTG-T--ATTTT-AAACTGCTTTGAAA--TGT----ACAACTGA-ACTGTT--AAGTCACGATGAAAT-GCATCGTTTTGT-TT--CCA-TAGAAAC-ACAA--TTTAGAAG-CCacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|11 : tattctgcgtcattgattCA-AA-AC-CAATCGTTTCAAGAAGAGA--AAT-AACC--CATAACAGGAATATTCAAACCCTATTAACT--ACAATGT----------C-AAAACTATAAC-A-CT-AAG-A-A---TATGGTTG-----AAACA-TGAACATTT-ATAA-TGA-TAT-TTTAT-CAAATC---GAAGCAAC-TGAAA-CTAGCATTA-TTCGGA--TTTAGAAA-AAATG-TC-AT---TTT
gi|12 : c-TG-TCTCT-T-T-TC-TG------ACT--TGAATG-GCATGCAC-CCGTTAT--C--ATGGCAACAGAGGTGCCTA-GCAA-CCAA-AAT-A--TGG--T--G-GATTTACA-TTA---CT--AATGGGGAAATAAATC---AATGT-G-CCAAATTTG--AGAAA-AA-TCGG-A---CAC--GGT--GC-GTGCCGGA--CCCCTT-ATA----TAA
gi|13 : CATTTTGTGTT--TCA-TGAAAACGACAGGGCTTAGAAGTCCAGATGGCGGTCCAAATGACA-TGTTTCA-TCT-----GTCCTAATATGGAT--AGTACATG--AGG-TGTCCTAATGCAATATGTT--AGA-
gi|14 : actgagcgaaaagtatgactgcaacccAAAAATCG--AGATGTGAACTGG-TAGAGAC--G-T-TGC-ACGTGGAG--TCCTTT-ATA----TAAAAT-G-T-TTAAGTGGTATA-CA--AGAATGGC-TCTTAATtc
gi|15 : gagA-CGAC-TAAAA-CCAGCA-TA-TTCATA--T----AAA-AAATG-CC-AT---TTTT----CAT--GTTA-AAAT-TG-CCTCT-T-T-TTGTG------ACC--TCAGTG-GCATGCAC-GTGTTA---CC-ATGGCAACAGGGTTGtcgttacccaaagaaa
gi|16 : -AAAT-TG-CACCT-TAC-C--TG------ACC--TGAAAA-ACATGCGT-GTGATACAATC-ACA-CAATAGG--TGCGTT-GCAA-CC-A-AATCA--TGG--TA-G-T-TTCACA-ATA---CT--TATAGGAACTTAAGT
gi|17 : TGCCAAA--CCCCTT-ATA----TAAA-T-GTT-TTAAGCGGT-TA-TA-GAGAATTACTCTTTAAA
gi|2 : CAACAGTCACTGGAT-CACT--GTGAAAGACATTC-TTATATATTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCTG-TTATCCA--CAGCACCA-ATAAATTTAAAATT--GAAAT---TAA--ATTTTCA-TT-CC-TGGCAACCAACATTAATTCTCTA-TATCAAA-TCTTGTTA--ATGATCT-AAA-GATAACATTCAATAGGAG-CTGTTAT-CAAGAT-A-TATACTTTG--TTTCAAATAAA--TTG-T--ATT-T-TAATTCCATTG--A-ATGT-TACACAACTGA-A-TGCC--AAATCACGACGAAAT-GCATCATTTT-T-TT--CCA----GAAC-A-AG--CTTAGAAA-GCAGAT-----TTC-CACAACA-TGTGTTA-T-T-----T---TAATAT-GAG--A-TAC-T---AGGAT---CTAATGC----TGCT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGCGT-GGATCATTATTTACCCACA--C--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TG-T--AAT-TGTC--AATAC-CACTC-TTTCATAAGGAGAG-AAT-AAATGATGTGA-AGAGATATTC--AACCCAC-AACT--A---TGT----------C-AAA-CT--AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTT--TAA-TTA-TAT-TTTATGAAAATC---AAA-CGACTTAAAA-TCAGCA-TA-TTCGTA--T----AAACAAATG-T--AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--CT--TG-ACACGCACTGTGTTAC--TC---GGCAA-AGGGTTGCCTAGGCAA-C--A-AATCA--TGA--T--G-T-TCTACGTTTA---CT--AACGGGAAGT--AGTCC--TATGTGC-CAGAATTTGGCAGAAA-AAATCGG-T---GAT--GGTCTGC-GTGCCGGA--CCCTGT--TA----TAAA-T-G-T-TATAGTGG--TA-CA-G-GAATGGCTTCTTAAATCatgagtcaatttggaatc
gi|3 : ATTTCGAATTTAAAAAGAAGCAACAATTTTCG-TTTCCATG-------ACATTAATTCTC-A-TATCAAA-T-TTGCT---ATAA---------ATAATGATCAATAGCAGTTACTT-T-CAAGATAA-TATACTTTGA-TTTCAAATAAA-ATTG-T--ATT-T-AAATTGCGTTGAAATATATATGCACCTCTG---CTGTC--ACATCACAACGAAAT-GTATCATTTTGT-TT--CTA-TGGAAAC-AAAG--CTTAAAAG-ATAGAA-----TCC-CA-AATA-TGTTTCA-T-T-----G---TTATAT-GAT--AGTAC-T---AGG-T---CCAACGC---ATGTT--GAA-CAAGCA-----------------T-C--AAGCTGTATGGGGGGAGTTTTTATCCA-T--T--ATTT--AT---T-TGCCCCTAAAAATAGCTGTTT-TA-G--AATGTATCA-CATTT-TCCTC-TTTTGCTGACAGA--AAT-AAACTA--TGATAGAAATATTC-AAACCAAT-AATTAAA---TAT----------A-AAA-CTA-AGC-A-ATAA-A-A-A---TAC---TA-----AAA-A-TTAATATTTCATAA-TGA-TATATTTTT---AATC---AAA-CAGC-TAAAA-TAATCA-TA-TTTGAT--T----AAA-AATTG-TC-A----TTTT----CAT---TTA-AAAATTG-CCTCT-T-T-TG-TG------ACC--TGAATG-ATATGCAA-GTGTTA---CC-ATGGCAACAAAGTTGCCTA-GCAACC--A-AATTA--TGA--T--GAT-TGTACG-TTA---CT--AATGGGAAATTAAGT-C--GATGT-C-CCGAATTTG--AG-----AATCGG-T---GAA--GG--TGC-GTGCCAGA--CCCC
gi|4 : actgCAACAACCATTG-AT-CATT--GCGAAAGACTNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTTTATTCAGCACCA-ATAAATGTCAAATTTTGAAAT---CAACGATTTTCA-TT-CCATGGCAACCAACATTAATCCT-TA-TATCAAA-T-TTGTT---ATGATTTTAAA-GATAACA-TCAAT--TAGTCAATTAT-CAAGATAATTATACTTTGA-TTTCAAATAAA-TTTG-TTAATTAT-AAATTGCACTG-AA-ATGT----ACCACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGG-AAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CAACATG-TTTTTCA-T-T-----G---TTATAT-GAT--AGTAC-T---AGG-T---CTAATAA---ATG-T--TGATCAAG-AT-TC--A-A----TATTT-C--ATGCTGGGTGGGATAA-TGTTTACCCA-A--C--ATTCAAAT---C-TGCTTCT-AAACTGGCT-TTTATA-G--AAT-TGTCA-AATAC-ACCTC-TTT-GC-AAGAGAGAAAT-AACC--CATGACAGGAATATTC-AAACCCAT-AACTAAA---TGT----------C-AAA-CTA-AAC-A-CT-A-GAA-A---TGT---TG-----AAA-A-TGAACATTTTATAA-TGA-TAT-TTTATG-AAATC---GAA-CAAC-TGAAA-CTAGCA-TA-TTCGGATTT----AAA-AAATG-TC-AT---TTT
gi|5 : attgaaatcctttcatttACAGTCATTG-ATGCATTTTGTGGA-GACATCCATGATATAATA-ATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGTTTAATCAGCACTATAGAAATTTCAAATTTGGAAAT---CAACCATTT-CT-TT-CCATGGCAACCAACATTAATTTTTTCCTGTCAAAAT-TTGTTTGTATAATTT-AAAAGATA-CATT-AATAGGAGTCAGTTATTCAAGATA--TATACTTTGACTTTCAAATAAAATTTGGT--ATTATGAAATTGCATTGAAA--TGT--ACA-AACTGACACTGCTCGAAATTACGACGAAATTGTCCCATTTTGT-TT--CCAATGGAAACGACAG--CTTAGAAG-CC-GAT-----TCC--GCAATA-TGTTTCA-T-T-----G---TTATAT-GAT--AGTAC-G---AG--T---CTAATGC---ATGTTGATTA-CACGCAT-TC--A-AA---TATTTTC--AAGCTGGGTGGGATAATTGTTTACCCA-A-----ATTC-AACATGT-TGCCTTT-AAAAT-GCT-TTT-TA-G--AAT-TGTCAGAATAC-ACCTC-TTT--TCAAGACAG-AAT-AA
gi|6 : tattgaagaatccttttcatttctatatT-GAT--AGTAC-G---AGG-T---ATAATGC---ATGTT--GAA-CAAGCAT-AC--ATATAATTATTT-CAAAAG-TGAGTGGGAGAATTTTCCACCC--A--TCAATTC-AAT---TGTGTCTCTAAAA
gi|6 : ttGACAGAAACGTTCAAA-CTCAT-AAAT--A---TATATACATGTATC-AAA-CTA-AAC-A-CT-A-A-A-AGTACAT---TGTAGCTAGA-A-ATAACAATTTATAA-TGA-TAT-TTCATGCAA-TC---AAA-CAAC-TAAAA-TCAGCA-TA-TTCGAC--T-----AA-AATTG-TC-AT---TGTT-----AT--GTTA-AAAT-TG-CATTTAT-T-T--TT------ACC--TCAGTG-TCATGCAC-GTGTTG---CC-ATGGAAACAGAGCTTCCTA-GCAA-C--C-AATCA--CGAT-T--G-T-TCTGCG-TTAACTTT--GA--GAAAATTA--TCCTTG-TGT-C---AAATTTG--A-AAA-ATGTCGG-T---AAC--GG--TGC-GTGCCGGA--TCCCTG-ATT----TAGT-T-T-TGTTAAGTGAT-CA-CA-tttcagacagacagaaacgttcaaactcataaatatatatacatgtatcaaactaaacactaaaagtacattgtagctagaaataacaatttataatgatatttcatgcaatcaaacaactaaaatcagcatattcgactaaaattgtcattgttatgttaaaattgcatttatttttacctcagtgtcatgcacgtgttgccatggaaacagagcttcctagcaaccaatcacgattgttctgcgttaactttgagaaaattatccttgtgtcaaatttgaaaaatgtcggtaacggtgcgtgccggatccctgatttagttttgttaagtgatcaca
gi|7 : tttgatagtacgaggtataatgcatgttgaacaagcatacatataattatttcaaaagtgagtgggagaattttccacccatcaattcaattgtgtctctaaaatttcagaca-TGTCA-AATAC-CCCTC-TTTT--CAAGAGAG-AATTAAATTA--TGACAGAGATATTCAAA-CCCAT-AACT--AAA-TGT----------CCAAA-CTA-AACGA-CT-A-G-A-A---AAT---TG-----AAA-AATTAACATTTTATAAATGA-CTT-TTTATGAAA--T---AAA-CGAC-TAAA--CCAGCA-TA-T-CGTA--T----AAAGAAATG-TCCAT---TTTT----TCT--GTTA-AAAAATG-CCTCT-T-T-T--TGTGA---ACC--TCAGTG-A-ATGCAC-GTGTTAA--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--C-GATCA--TGA--G--G-T-T-TACG-CTA---CT--TACGGGAAGTTAAGT-C--GATGT---CAAAGTTTG--AG-AA-AAATCGG-----GAT--GG--TGCTGTGCCGGAACCCCCTG-ATAGGGTTAAA-TGG-T-TTAAGTGGT-TAGCA-GAG-ATGGCTGCTTGA
gi|8 : AA-T-TTGACATTTTATAAGTGAATAT-TTAATGAGA--T---AAA-CAAC-TAAAAACCAGCA-TAATTCG-A--T-----------TT-TA-AT---TTTT----CATC-GTTA-AAAA-TGCCCTCT-T-TAG--TG------ACG--CTAGTG-AC-T-CAC-GTGTTAC--GC-ATGGCAACAGGGTTG-CTA-GCAACC--A-AATCA--TGA--TTGG-T-TCTAGG-TTA---CCTAAATGGTAAATTAAGT-C--GATGT-TGCAAA--TTG--AG-AA-AAATCGA-T---GAC--GG--TGC-GTGCTGGA--CCCCTTAATA----TAAA-T---T-TTAAGTGGT-TAGCAGGAGAATGGC-TCTTAACTC
gi|9 : TAC-T---GGG-T---TTAATGC---ATGTT--TAA-CAAtttcatcaagtttgtaaagaaaaattttcatagcatatgtaaattggaaa
gi|9 : a-AAT---T-TGTCTTTAAAT-TAGCT-TTT-AA-T--AATGTATCA-AATGC-GCATC-TTTTGGAAACAAA--AAT-AAACTACG--AGAGAAATATTCAAAatttgtctttaaattagcttttaataatgtatcaaatgcgcatcttttggaaacaaaaataaactacgagagaaatattcaaactgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
gi|9 : atactgggtttaatgcatgtttaaca-AAATGGTC-AT---TTTTTGGGCATA-GTT-------T--CCTCTAT-T-G--TG------ACT--GTTTTG-ATATTTAC-ATTTTAT--C--GTCGCAACGAAGGTGCATA-GCAA-C--A-AAACAATTG------G-T-TTTGCA-TCA---CT--AActgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
Alignments
lowQualScore : 1 1 11 1 1 1 111 1 2222 111 1 11 1 1 11 222 1 222222 222222222 11111 111 111111 222222222222 2222222 11111 1111 1 2222 11 1111 1 1 3333333333333333333 1 111 111 11111 111 1 111111 11111 1111 11 11 1111 111111 222222 1111 11111 2222 11111 11111 22 1111 111 1 1
lowQualScore : 0 0 33 3 0 1 1 8 1 0 1 9 0 1 111 3 88 3 2 2222 6 6 888 6 6 1 1 6 88 6 00 6 99 1 6 5 44 333 6 99 1 6 5 77 5 0 1 0 77 5 000000 99 5 6 6 6 222222222 1 5 77 55555 5 888 333 333333 6 666666666666 6 99 1 1 3 1 4444444 55 44444 1 5 5 3 6 6 4444 1 5 66 5 5555 33 5 9999 3 2 1 6 0000000000000000000 5 5 77 5 5 1 666 5 000 000 44444 000 5 0 5 5 0 88 111111 4 4 4 55 4 4 8888 11111 8 1 4 4 777 5555 66 4 00 4 8 4 4444 888888 55 2 4 0 4 000000 4 8 1111 66 77777 8 4 3 4 777 66 4 1 7777 99999 66 9 5 22 44444 66 00 5 66 5 0000 5 222 5 5 1 5 5 1
lowQualScore : . . .. . . . . . . . . . . . ... . .. . . .... . . ... . . . . . .. . .. . .. . . . .. ... . .. . . . .. . . . . .. . ...... .. . . . . ......... . . .. ..... . ... ... ...... . ............ . .. . . . . ....... .. ..... . . . . . . .... . . .. . .... .. . .... . . . . ................... . . .. . . . ... . ... ... ..... ... . . . . . .. ...... . . . .. . . .... ..... . . . . ... .... .. . .. . . . .... ...... .. . . . . ...... . . .... .. ..... . . . . ... .. . . .... ..... .. . . .. ..... .. .. . .. . .... . ... . . . . . .
lowQualScore : 0 0 88 2 0 0 0 2 0 0 2 8 0 0 777 7 88 3 5 3333 7 7 333 7 7 7 7 7 33 7 22 7 22 7 7 5 00 777 7 22 7 7 7 99 7 1 4 7 99 7 222222 22 2 7 7 7 555555555 0 7 99 88888 0 888 888 444444 7 888888888888 7 22 0 5 2 0 5555555 99 66666 7 0 7 7 7 7 2222 4 0 44 0 1111 88 0 3333 0 0 3 7 6666666666666666666 7 7 11 7 7 4 000 7 000 000 33333 444 1 0 0 0 4 66 111111 4 4 4 33 4 4 0000 33333 0 2 0 0 000 6666 99 4 33 0 0 0 8888 555555 55 3 0 8 0 000000 4 9 3333 11 44444 9 4 7 4 888 11 2 1 1111 11111 99 4 0 44 11111 99 55 0 11 0 6666 7 111 7 7 4 7 5 0
consensus : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCG-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTCA-AATAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTTTATAA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--TCAGTG-ACATGCAC-GTGTTAC--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
Reference ( family-1985 ) : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCG-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTCA-AATAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTTTATAA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--TCAGTG-ACATGCAC-GTGTTAC--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
gi|1 : CAACAATCATTG-AT-CATT--GTGGAAGANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTATATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---TTACGATTTTCGTTT-CCATGGCAACCAACATTAATTCT-TA-TATCAAA-T-TTGTT---ATGATCT-AAA-GATAACA-TCATTAGGAGTCAGTTAT-CAAGATAA-TATATTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTG-AA-ATG--TAC-CATCTGA-ACTGCC--AA---ACGAC--AAT---AT-ATTTTGT-TTTCCTA-TGGAAA--ACAG--CTTAGAAG-CCAGA------TCC-CACATTGTTTTTTCAGT-TATGTAG---TGATCT-GATTGAGTAC-TATGAGG-T---CT-ATGCA--ATGTTG-TG--CAAG-ATGTCAAA-A----TTTTT-C--AAGCTGGGTGGAGCGATTTTATACCCA-AATT--GTTT-GAT---TATGCCT-TAAAGGGGGTT-TTC-TATGCTAA--TGTCA-AATATACCTTC-ATTTACA---AGAG-AA--AAACTA
gi|1 : tgaaatcctttcatttT--A---TAC----------C-AGA-T---AAC-AGCTGA-G-AGA---TTT---TG-----AAA---TTAA-ATTTTATAA-T-A-TAG-TTT-TGAAAATTCTAGAA-C-AC-TAAAA---AGCA-TA-GTCGTA--T----AAA-AATTG-TC-ATGTGTTTTA---CATTGGTTATAAAA-TG-CCTCT-T-T-T--TATGTCGAAGCAGTCAGTGGAC-TGCGT-G-GTTAC--ATGATGG--ACAGG-TTGCT-----AA-C--ACAATTA--TGAGAT--GGT-TCTACG-TTA---CT--AACAGGAAGTTAAGT----GATGT-T-TCAAATTTT--GGAGA-A--TCGGGT---GATTGGGT-TGC-GTGCCGGA--CCCCTT-ACA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGC-TCTTAAGaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgtataccagataacagctgagagattttgaaattaaattttataatatagttttgaaaattctagaacactaaaaagcatagtcgtataaaaattgtcatgtgttttacattggttataaaatgcctctttttatgtcgaagcagtcagtggactgcgtggttacatgatggacaggttgctaacacaattatgagatggttctacgttactaacaggaagttaagtgatgtttcaaattttggagaatcgggtgattgggttgcgtgccggaccccttacataaatgtttaagtggttacagagaatggctcttaagtacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|10 : tgaaatcctttcatttcaacaatcattgatcattgtggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtatattcagcaccaataaatttcaaatttggaaatttacgattttcgtttccatggcaaccaacattaattcttatatcaaatttgttatgatctaaagataacatcattaggagtcagttatcaagataatatattttgatttcaaataaatttgtattataaattgcattgaaatgtaccatctgaactgccaaacgacaatatattttgttttcctatggaaaacagcttagaagccagatcccacattgttttttcagttatgtagtgatctgattgagtactatgaggtctatgcaatgttgtgcaagatgtcaaaatttttcaagctgggtggagcgattttatacccaaattgtttgattatgccttaaagggggttttctatgctaatgtcaaatataccttcatttacaagagaaaaactaaggatgttgacaagaggaattgttgaggggatggtactgctttaaactccacacacgaggactaagtgtcatagtgagagtctgTTTGAAAAG---CAACAATTTTCA-TTTCCATGGGAAC-------------------TGAAA-T-TTGTT---ATACTTA-AAA-GTTAGCAT-CAACAGGAGTTAGTTAT-CAAGATAG-CATAAATAGA-TTTCAAATAAA-TTTG-T--ATTTT-AAACTGCTTTGAAA--TGT----ACAACTGA-ACTGTT--AAGTCACGATGAAAT-GCATCGTTTTGT-TT--CCA-TAGAAAC-ACAA--TTTAGAAG-CCacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|11 : tattctgcgtcattgattCA-AA-AC-CAATCGTTTCAAGAAGAGA--AAT-AACC--CATAACAGGAATATTCAAACCCTATTAACT--ACAATGT----------C-AAAACTATAAC-A-CT-AAG-A-A---TATGGTTG-----AAACA-TGAACATTT-ATAA-TGA-TAT-TTTAT-CAAATC---GAAGCAAC-TGAAA-CTAGCATTA-TTCGGA--TTTAGAAA-AAATG-TC-AT---TTT
gi|12 : c-TG-TCTCT-T-T-TC-TG------ACT--TGAATG-GCATGCAC-CCGTTAT--C--ATGGCAACAGAGGTGCCTA-GCAA-CCAA-AAT-A--TGG--T--G-GATTTACA-TTA---CT--AATGGGGAAATAAATC---AATGT-G-CCAAATTTG--AGAAA-AA-TCGG-A---CAC--GGT--GC-GTGCCGGA--CCCCTT-ATA----TAA
gi|13 : CATTTTGTGTT--TCA-TGAAAACGACAGGGCTTAGAAGTCCAGATGGCGGTCCAAATGACA-TGTTTCA-TCT-----GTCCTAATATGGAT--AGTACATG--AGG-TGTCCTAATGCAATATGTT--AGA-
gi|14 : actgagcgaaaagtatgactgcaacccAAAAATCG--AGATGTGAACTGG-TAGAGAC--G-T-TGC-ACGTGGAG--TCCTTT-ATA----TAAAAT-G-T-TTAAGTGGTATA-CA--AGAATGGC-TCTTAATtc
gi|15 : gagA-CGAC-TAAAA-CCAGCA-TA-TTCATA--T----AAA-AAATG-CC-AT---TTTT----CAT--GTTA-AAAT-TG-CCTCT-T-T-TTGTG------ACC--TCAGTG-GCATGCAC-GTGTTA---CC-ATGGCAACAGGGTTGtcgttacccaaagaaa
gi|16 : -AAAT-TG-CACCT-TAC-C--TG------ACC--TGAAAA-ACATGCGT-GTGATACAATC-ACA-CAATAGG--TGCGTT-GCAA-CC-A-AATCA--TGG--TA-G-T-TTCACA-ATA---CT--TATAGGAACTTAAGT
gi|17 : TGCCAAA--CCCCTT-ATA----TAAA-T-GTT-TTAAGCGGT-TA-TA-GAGAATTACTCTTTAAA
gi|2 : CAACAGTCACTGGAT-CACT--GTGAAAGACATTC-TTATATATTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCTG-TTATCCA--CAGCACCA-ATAAATTTAAAATT--GAAAT---TAA--ATTTTCA-TT-CC-TGGCAACCAACATTAATTCTCTA-TATCAAA-TCTTGTTA--ATGATCT-AAA-GATAACATTCAATAGGAG-CTGTTAT-CAAGAT-A-TATACTTTG--TTTCAAATAAA--TTG-T--ATT-T-TAATTCCATTG--A-ATGT-TACACAACTGA-A-TGCC--AAATCACGACGAAAT-GCATCATTTT-T-TT--CCA----GAAC-A-AG--CTTAGAAA-GCAGAT-----TTC-CACAACA-TGTGTTA-T-T-----T---TAATAT-GAG--A-TAC-T---AGGAT---CTAATGC----TGCT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGCGT-GGATCATTATTTACCCACA--C--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TG-T--AAT-TGTC--AATAC-CACTC-TTTCATAAGGAGAG-AAT-AAATGATGTGA-AGAGATATTC--AACCCAC-AACT--A---TGT----------C-AAA-CT--AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTT--TAA-TTA-TAT-TTTATGAAAATC---AAA-CGACTTAAAA-TCAGCA-TA-TTCGTA--T----AAACAAATG-T--AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--CT--TG-ACACGCACTGTGTTAC--TC---GGCAA-AGGGTTGCCTAGGCAA-C--A-AATCA--TGA--T--G-T-TCTACGTTTA---CT--AACGGGAAGT--AGTCC--TATGTGC-CAGAATTTGGCAGAAA-AAATCGG-T---GAT--GGTCTGC-GTGCCGGA--CCCTGT--TA----TAAA-T-G-T-TATAGTGG--TA-CA-G-GAATGGCTTCTTAAATCatgagtcaatttggaatc
gi|3 : ATTTCGAATTTAAAAAGAAGCAACAATTTTCG-TTTCCATG-------ACATTAATTCTC-A-TATCAAA-T-TTGCT---ATAA---------ATAATGATCAATAGCAGTTACTT-T-CAAGATAA-TATACTTTGA-TTTCAAATAAA-ATTG-T--ATT-T-AAATTGCGTTGAAATATATATGCACCTCTG---CTGTC--ACATCACAACGAAAT-GTATCATTTTGT-TT--CTA-TGGAAAC-AAAG--CTTAAAAG-ATAGAA-----TCC-CA-AATA-TGTTTCA-T-T-----G---TTATAT-GAT--AGTAC-T---AGG-T---CCAACGC---ATGTT--GAA-CAAGCA-----------------T-C--AAGCTGTATGGGGGGAGTTTTTATCCA-T--T--ATTT--AT---T-TGCCCCTAAAAATAGCTGTTT-TA-G--AATGTATCA-CATTT-TCCTC-TTTTGCTGACAGA--AAT-AAACTA--TGATAGAAATATTC-AAACCAAT-AATTAAA---TAT----------A-AAA-CTA-AGC-A-ATAA-A-A-A---TAC---TA-----AAA-A-TTAATATTTCATAA-TGA-TATATTTTT---AATC---AAA-CAGC-TAAAA-TAATCA-TA-TTTGAT--T----AAA-AATTG-TC-A----TTTT----CAT---TTA-AAAATTG-CCTCT-T-T-TG-TG------ACC--TGAATG-ATATGCAA-GTGTTA---CC-ATGGCAACAAAGTTGCCTA-GCAACC--A-AATTA--TGA--T--GAT-TGTACG-TTA---CT--AATGGGAAATTAAGT-C--GATGT-C-CCGAATTTG--AG-----AATCGG-T---GAA--GG--TGC-GTGCCAGA--CCCC
gi|4 : actgCAACAACCATTG-AT-CATT--GCGAAAGACTNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTTTATTCAGCACCA-ATAAATGTCAAATTTTGAAAT---CAACGATTTTCA-TT-CCATGGCAACCAACATTAATCCT-TA-TATCAAA-T-TTGTT---ATGATTTTAAA-GATAACA-TCAAT--TAGTCAATTAT-CAAGATAATTATACTTTGA-TTTCAAATAAA-TTTG-TTAATTAT-AAATTGCACTG-AA-ATGT----ACCACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGG-AAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CAACATG-TTTTTCA-T-T-----G---TTATAT-GAT--AGTAC-T---AGG-T---CTAATAA---ATG-T--TGATCAAG-AT-TC--A-A----TATTT-C--ATGCTGGGTGGGATAA-TGTTTACCCA-A--C--ATTCAAAT---C-TGCTTCT-AAACTGGCT-TTTATA-G--AAT-TGTCA-AATAC-ACCTC-TTT-GC-AAGAGAGAAAT-AACC--CATGACAGGAATATTC-AAACCCAT-AACTAAA---TGT----------C-AAA-CTA-AAC-A-CT-A-GAA-A---TGT---TG-----AAA-A-TGAACATTTTATAA-TGA-TAT-TTTATG-AAATC---GAA-CAAC-TGAAA-CTAGCA-TA-TTCGGATTT----AAA-AAATG-TC-AT---TTT
gi|5 : attgaaatcctttcatttACAGTCATTG-ATGCATTTTGTGGA-GACATCCATGATATAATA-ATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGTTTAATCAGCACTATAGAAATTTCAAATTTGGAAAT---CAACCATTT-CT-TT-CCATGGCAACCAACATTAATTTTTTCCTGTCAAAAT-TTGTTTGTATAATTT-AAAAGATA-CATT-AATAGGAGTCAGTTATTCAAGATA--TATACTTTGACTTTCAAATAAAATTTGGT--ATTATGAAATTGCATTGAAA--TGT--ACA-AACTGACACTGCTCGAAATTACGACGAAATTGTCCCATTTTGT-TT--CCAATGGAAACGACAG--CTTAGAAG-CC-GAT-----TCC--GCAATA-TGTTTCA-T-T-----G---TTATAT-GAT--AGTAC-G---AG--T---CTAATGC---ATGTTGATTA-CACGCAT-TC--A-AA---TATTTTC--AAGCTGGGTGGGATAATTGTTTACCCA-A-----ATTC-AACATGT-TGCCTTT-AAAAT-GCT-TTT-TA-G--AAT-TGTCAGAATAC-ACCTC-TTT--TCAAGACAG-AAT-AA
gi|6 : tattgaagaatccttttcatttctatatT-GAT--AGTAC-G---AGG-T---ATAATGC---ATGTT--GAA-CAAGCAT-AC--ATATAATTATTT-CAAAAG-TGAGTGGGAGAATTTTCCACCC--A--TCAATTC-AAT---TGTGTCTCTAAAA
gi|6 : ttGACAGAAACGTTCAAA-CTCAT-AAAT--A---TATATACATGTATC-AAA-CTA-AAC-A-CT-A-A-A-AGTACAT---TGTAGCTAGA-A-ATAACAATTTATAA-TGA-TAT-TTCATGCAA-TC---AAA-CAAC-TAAAA-TCAGCA-TA-TTCGAC--T-----AA-AATTG-TC-AT---TGTT-----AT--GTTA-AAAT-TG-CATTTAT-T-T--TT------ACC--TCAGTG-TCATGCAC-GTGTTG---CC-ATGGAAACAGAGCTTCCTA-GCAA-C--C-AATCA--CGAT-T--G-T-TCTGCG-TTAACTTT--GA--GAAAATTA--TCCTTG-TGT-C---AAATTTG--A-AAA-ATGTCGG-T---AAC--GG--TGC-GTGCCGGA--TCCCTG-ATT----TAGT-T-T-TGTTAAGTGAT-CA-CA-tttcagacagacagaaacgttcaaactcataaatatatatacatgtatcaaactaaacactaaaagtacattgtagctagaaataacaatttataatgatatttcatgcaatcaaacaactaaaatcagcatattcgactaaaattgtcattgttatgttaaaattgcatttatttttacctcagtgtcatgcacgtgttgccatggaaacagagcttcctagcaaccaatcacgattgttctgcgttaactttgagaaaattatccttgtgtcaaatttgaaaaatgtcggtaacggtgcgtgccggatccctgatttagttttgttaagtgatcaca
gi|7 : tttgatagtacgaggtataatgcatgttgaacaagcatacatataattatttcaaaagtgagtgggagaattttccacccatcaattcaattgtgtctctaaaatttcagaca-TGTCA-AATAC-CCCTC-TTTT--CAAGAGAG-AATTAAATTA--TGACAGAGATATTCAAA-CCCAT-AACT--AAA-TGT----------CCAAA-CTA-AACGA-CT-A-G-A-A---AAT---TG-----AAA-AATTAACATTTTATAAATGA-CTT-TTTATGAAA--T---AAA-CGAC-TAAA--CCAGCA-TA-T-CGTA--T----AAAGAAATG-TCCAT---TTTT----TCT--GTTA-AAAAATG-CCTCT-T-T-T--TGTGA---ACC--TCAGTG-A-ATGCAC-GTGTTAA--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--C-GATCA--TGA--G--G-T-T-TACG-CTA---CT--TACGGGAAGTTAAGT-C--GATGT---CAAAGTTTG--AG-AA-AAATCGG-----GAT--GG--TGCTGTGCCGGAACCCCCTG-ATAGGGTTAAA-TGG-T-TTAAGTGGT-TAGCA-GAG-ATGGCTGCTTGA
gi|8 : AA-T-TTGACATTTTATAAGTGAATAT-TTAATGAGA--T---AAA-CAAC-TAAAAACCAGCA-TAATTCG-A--T-----------TT-TA-AT---TTTT----CATC-GTTA-AAAA-TGCCCTCT-T-TAG--TG------ACG--CTAGTG-AC-T-CAC-GTGTTAC--GC-ATGGCAACAGGGTTG-CTA-GCAACC--A-AATCA--TGA--TTGG-T-TCTAGG-TTA---CCTAAATGGTAAATTAAGT-C--GATGT-TGCAAA--TTG--AG-AA-AAATCGA-T---GAC--GG--TGC-GTGCTGGA--CCCCTTAATA----TAAA-T---T-TTAAGTGGT-TAGCAGGAGAATGGC-TCTTAACTC
gi|9 : TAC-T---GGG-T---TTAATGC---ATGTT--TAA-CAAtttcatcaagtttgtaaagaaaaattttcatagcatatgtaaattggaaa
gi|9 : a-AAT---T-TGTCTTTAAAT-TAGCT-TTT-AA-T--AATGTATCA-AATGC-GCATC-TTTTGGAAACAAA--AAT-AAACTACG--AGAGAAATATTCAAAatttgtctttaaattagcttttaataatgtatcaaatgcgcatcttttggaaacaaaaataaactacgagagaaatattcaaactgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
gi|9 : atactgggtttaatgcatgtttaaca-AAATGGTC-AT---TTTTTGGGCATA-GTT-------T--CCTCTAT-T-G--TG------ACT--GTTTTG-ATATTTAC-ATTTTAT--C--GTCGCAACGAAGGTGCATA-GCAA-C--A-AAACAATTG------G-T-TTTGCA-TCA---CT--AActgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
blockSeqs : G G TT A A T T T T A C T T G AAG A A T C TTCC A C TGT T A G T T AT C AT G TA T G A TA ATG C CG G T G . A G GG T TGGCGG AA T . . C GTCC A G . ATG A GTC AAT GATTA C ACATATAAT T AA C T T A ATCA AA ATGT C A A G G A T G G C G CAAG GA T GATG T A A . ATATATACATGTAT C A AT G . A AG . GTA GGT TAGCT CA C A A A GA ATC G A T AC T A GATT TTAGA C A G C . TGGG C . AT C A A TTG TGA . G . T CAATC G C CAA AT TTG A A T T ACT TA T A CCTT GCCA GC A T AA TAGA . TC T AC A GGGT A GT G A G G T T
blockSeqs : . . . A . N N N N . T A . A . A A T C CTA . . A . . A T . G . T . . A . A A TA . . A . . . . G . . T C C . . . T A . . T . . . TGAT C TCAAA . . T G G T CAC A TG C A A A . . G G . C . CATA G . TACG C A A . ACAATGT . . A . . . GA . . . . AA T G . . GC ATC . G . C . . GA A G A . . . . A . AA . A . TC . . C . . CTC . C CA . TA . . T . . . T C CC TGCA . A . AA A . T . . . . . GG . . G . T A
blockSeqs : . . . . . G A . A . T . . T . G G . C CA . . . . . A A . A . A . . A . A A A . . A . . . . . . . A C A . . . G T . . T . . . AGA C TCAA . . G T T G TT A T C A C G . . G . . T . TGCT G . TA C A A . AAATAT . . A . . . G . . . . A T . . . GA ATC . G . C . . TA A . A . . . . . . T . . . TG . . G . . ACC . . A . TT . . C . . . C G C GCC . A . AA T . T . . . . . G . . . . T A
blockSeqs : G . C A . . TA . . . . . A T . A . T . . . . . . . . . A . . . . . . . T C C . . . G T . . T . . . TGA C TCAA . . G T T G AC A T T A A A . . G . . A . TGGA G . CA C . . . AAATGT . . A . . . A . . . . A T . . . GA ATC . A . T . . TA A . T . . . . . . T . . . AG . . T . . CGC . . A . T . . G . . . T A C CCC . A . TG T . . . . . . . G . . . . . C
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . . G T . . G . . . GAA . . . . A G . T A A C C . . . . . T . . A . GC . . TA G . . . AAATGT . . A . . . A . . . . A T . . . C TC . A . T . . AT A . A . . . . . . A . . . C . . G . . TC . . C . T . . C . . . C A C CA . . . AA T . . . . . . . T . . . . .
blockSeqs : . . . . . . . . G . . . GAA . T T . . . C . TC . . . . ATGT . . . . . . G . . . . A . . . . G T . A . C . . AC A . T . . . . . . T . . . T . . C . . CC . . C . T . . C . . . T G C C . . . AA T . . . . . . . . . . . .
blockSeqs : T . . . TAA . G . TC . . T . . . . . T . G . T . . TA . . A . . . . . . A . . . T . . C . . CC . . A . G . . T . . . . A . . . A . . . . . . .
blockSeqs : . A . C . . A . . A . . . . . . . . T . . T . . CC . . A . . . . . . . . .
blockSeqs : . . . . . . . . G . . T . . TC
blockSeqCons : A* A* A** ** T***** G******** ** T**** *** TCAA******** AT***** T**** G*** N* AAATGT************* A* A** ATC*** C* *** **** ** ****** ** CC**** A*** T**** C*** GCC** AA T**** ** **
originalCons : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCG-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATGT-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--AAT-TGTCA-AATAC-CCCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACT--A---TGT----------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAA-A-TTAACATTTTATAA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--TCAGTG-ACATGCAC-GTGTTAC--CC-ATGGCAACAGGGTTGCCTA-GCAA-C--A-AATCA--TGA--T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTCC--GATGT-C-CAAAATTTG--AGAAA-AAATCGG-T---GAC--GGT-TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
finalCons : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCA-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAAA-TGTA--CACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-TG--------TNATAT-GAT--AGTACT----AGG-T---CTAATGC---ATGTT--TGA-CAAGCATTCAA--------TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCAAT-----ATTC-AATT----TGCCTCTAAAAATGGCT-TTT-TAG---AAT-TGTCA-AATACN-CCTC-TTTCGCNAAGAGAG-AAT-AAACTACGTGACAGAAATATTCAAAACCCAT-AACTAAATGT-------------C-AAA-CTA-AAC-A-CT-A-G-A-A---TAT---TG-----AAAA--TTAACATTTTATAA-TGA-TAT-TTTATGAAAATC---GAA-CGAC-TAAAAC-CAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TG-CCTCT-T-T-T--TG------ACC--TCAGTG-ACATGCAC-GTGTTACC----ATGGCAACAGGGTTGCCTA-GCAA-CA---AATCA--TGAT----G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGTC---GATGTGCC--AAATTTG--AGAAA-AAATCGGT----GAC--GG--TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
Alignments
lowQualScore : 1 1 11 1 1 1 111 1 2222 111 1 11 1 1 11 111 1 222222 222222222 11111 111 111111 222222222222 2222222 11111 111 1111 11 22222 11 3333333333 1111 444444444444444444 1111111 11111111 1 222222 11111 11111 11111 1111111111 1111 11 11 111111111111111 1111 1111 1 11 1111 111 1 1
lowQualScore : 0 0 33 3 0 1 1 8 1 0 1 9 0 1 111 3 77 3 2 2222 6 6 888 6 6 1 1 6 88 6 00 6 99 1 6 5 44 6 999 6 99 1 6 5 77 5 0 1 0 77 5 000000 99 5 6 6 6 222222222 1 5 77 55555 5 888 333 333333 6 666666666666 6 99 1 1 3 1 4444444 55 44444 1 5 333 5 5 0000 5 55 5 1 5 99999 1 33 4 6666666666 1 0000 777777777777777777 4 5 5 8888888 5 77 5 5 5 88888888 0 5 5 000000 5 888 22222 77777 11111 6 8 4 4 4 66 88 7 8888 4 4 4 44 4 4 5555555555 8 1 4 4 777 5555 66 4 00 4 8 4 888888888888888 55 2 4 0 4 4 99 55 6 4 4 5555 66 66 5555 4 4 3 4 777 66 4 1 5 7 5 77 9 0 5 1 5 33 5 66 5 0000 5 222 5 5 1 5 5 1
lowQualScore : . . .. . . . . . . . . . . . ... . .. . . .... . . ... . . . . . .. . .. . .. . . . .. . ... . .. . . . .. . . . . .. . ...... .. . . . . ......... . . .. ..... . ... ... ...... . ............ . .. . . . . ....... .. ..... . . ... . . .... . .. . . . ..... . .. . .......... . .... .................. . . . ....... . .. . . . ........ . . . ...... . ... ..... ..... ..... . . . . . .. .. . .... . . . .. . . .......... . . . . ... .... .. . .. . . . ............... .. . . . . . .. .. . . . .... .. .. .... . . . . ... .. . . . . . .. . . . . . .. . .. . .... . ... . . . . . .
lowQualScore : 0 0 88 2 0 0 0 2 0 0 2 8 0 0 777 7 00 3 5 3333 7 7 333 7 7 7 7 7 33 7 22 7 22 7 7 5 00 7 777 7 22 7 7 7 99 7 1 4 7 99 7 222222 22 2 7 7 7 555555555 0 7 99 88888 0 888 888 444444 7 888888888888 7 22 0 5 2 0 5555555 99 66666 7 0 777 7 7 7777 7 00 0 0 0 88888 1 99 4 1111111111 4 6666 444444444444444444 9 7 7 6666666 7 99 0 0 0 11111111 0 0 0 444444 0 888 55555 77777 11111 2 9 4 4 4 11 33 3 4444 0 6 0 88 0 0 3333333333 0 2 0 0 000 6666 99 4 33 0 0 0 444444444444444 55 3 0 8 0 0 55 55 7 4 4 8888 11 11 8888 4 4 7 4 888 11 2 1 0 9 7 99 0 1 7 7 0 88 0 11 0 6666 7 111 7 7 4 7 5 0
consensus : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCG-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATG-TACGCAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--A-AT-TGTCA-AATACGCC-TCTTTCGCNAAGAGAG-AAT-AAACTACG-----TGACA----GAAATATTCA-----------------AAAC-CCAT-A-------ACTA-AATG--TC-AAA-CTA-A--------AC-ACT-A-G--A---ATA-T---TG-----AAA-A---TTAACATT-----TTATAA-TGA-TAT-T-T--TATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TGCC-TCT-T-T-T--T------G---ACC--TCAGT-GACATGCAC-GTGTTA-C--CATGGCA--ACAGGGTTGCCTA-GCAA-C--A-AATCA--T--GA-T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGT-CGATGTNCCA-AATTTG--AGAAAAAATC-GGTGA-CGG--TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
Reference ( family-1985 ) : CAACAGTCATTG-AT-CATT--GTGGAAGACATCC-TNATATANTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCNG-CTGTTTATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---CAACGATTTTCA-TT-CCATGGCAACCAACATTAATTCTCTA-TATCAAA-T-TTGTT---ATGATTT-AAA-GATAACATTCAATAGGAGTCAGTTAT-CAAGATAA-TATACTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTGAAA-ATG-TACACAACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGGAAAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CACAATA-TGTTTCA-T-T-----G---TNATAT-GAT--AGTAC-T---AGG-T---CTAATGC---ATGTT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGGGTGGGATAATTNTTTACCCA-A--T--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TA-G--A-AT-TGTCA-AATACNCC-TCTTTCGCNAAGAGAG-AAT-AAACTACG-----TGACA----GAAATATTCA-----------------AAAC-CCAT-A-------ACTA-AATG--TC-AAA-CTA-A--------AC-ACT-A-G--A---ATA-T---TG-----AAA-A---TTAACATT-----TTATAA-TGA-TAT-T-T--TATGAAAATC---GAA-CGAC-TAAAA-CCAGCA-TA-TTCGNA--T----AAA-AAATG-TC-AT---TTTT----CAT--GTTA-AAAA-TGCC-TCT-T-T-T--T------G---ACC--TCAGT-GACATGCAC-GTGTTA-C--CATGGCA--ACAGGGTTGCCTA-GCAA-C--A-AATCA--T--GA-T--G-T-TCTACG-TTA---CT--AACGGGAAGTTAAGT-CGATGTGCCA-AATTTG--AGAAAAAATC-GGTGA-CGG--TGC-GTGCCGGA--CCCCTT-ATA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGCTTCTTAANTC
gi|1 : CAACAATCATTG-AT-CATT--GTGGAAGANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTATATTCAGCACCA-ATAAATTTCAAATTTGGAAAT---TTACGATTTTCGTTT-CCATGGCAACCAACATTAATTCT-TA-TATCAAA-T-TTGTT---ATGATCT-AAA-GATAACA-TCATTAGGAGTCAGTTAT-CAAGATAA-TATATTTTGA-TTTCAAATAAA-TTTG-T--ATTAT-AAATTGCATTG-AA-ATG-TAC-CATCTGA-ACTGCC--AA---ACGAC--AAT---AT-ATTTTGT-TTTCCTA-TGGAAA--ACAG--CTTAGAAG-CCAGA------TCC-CACATTGTTTTTTCAGT-TATGTAG---TGATCT-GATTGAGTAC-TATGAGG-T---CT-ATGCA--ATGTTG-TG--CAAG-ATGTCAAA-A----TTTTT-C--AAGCTGGGTGGAGCGATTTTATACCCA-AATT--GTTT-GAT---TATGCCT-TAAAGGGGGTT-TTC-TATGCTA-A--TGTCA-AATATACCTTCATTTACA---AGAG-AA--AAACTAAGGATGTTGACAAGAGGAATTGTTGAGGGGATGGTACTGCTTTAAACTCCAC-ACACGAGGACTA-AGTG--TC-ATA-GTG-AGAGTCTGTAT-ACC-A-GATA---ACAGC---TG-----AGA-GATTTTGAAATTAAATTTTATAA-T-A-TAG-T-T--T-TGAAAATTCTAGAA-C-AC-TAAAA---AGCA-TA-GTCGTA--T----AAA-AATTG-TC-ATGTGTTTTA---CATTGGTTATAAAA-TGCC-TCT-T-T-T--TATGTCGA---AGCAGTCAGTGGAC-TGCGT-G-GTTA-CATGATGG----ACA-GGTTGC-----TAA-C--ACAATTA--TGAGA-TG-G-T-TCTACG-TTA---CT--AACAGGAAGTTAAGT--GATGTTTCA-AATTTT--GG--AGAATCGGGTGATTGGGTTGC-GTGCCGGA--CCCCTT-ACA----TAAA-T-G-T-TTAAGTGGT-TA-CA-GAGAATGGC-TCTTAAG
gi|10 : tgaaatcctttcatttTTTGAAAAG---CAACAATTTTCA-TTTCCATGGGAAC-------------------TGAAA-T-TTGTT---ATACTTA-AAA-GTTAGCAT-CAACAGGAGTTAGTTAT-CAAGATAG-CATAAATAGA-TTTCAAATAAA-TTTG-T--ATTTT-AAACTGCTTTGAAA--TG-TACA--ACTGA-ACTGTT--AAGTCACGATGAAAT-GCATCGTTTTGT-TT--CCA-TAGAAAC-ACAA--TTTAGAAG-CCacgattaccaaatttagagtcaatatggcgtataaactgagaaa
gi|11 : tattctgcgtcattgattTTTCAAGAAGAGA--AAT-AACC--CA-----TAACA----GGAATATTCA-----------------AACC-CTATTA-------ACTACAATG--TC-AAAACTATA--------AC-ACT-AAG--A---ATA-TGGTTG-----AAACA---TGAACATT-----T-ATAA-TGA-TAT-T-T--TAT-CAAATC---GAAGCAAC-TGAAA-CTAGCATTA-TTCGGA--TTTAGAAA-AAATG-TC-AT---TTT
gi|12 : ccaaaaccaatcg-TGTC-TCT-T-T-TC-T------G---ACT--TGAAT-GGCATGCAC-CCGTTA-T--CATGGCA--ACAGAGGTGCCTA-GCAA-CCAA-AAT-A--T--GG-T--G-GATTTACA-TTA---CT--AATGGGGAAATAAAT-CAATGTGCCA-AATTTG--AG-AAAAATC-GGACA-CGG--TGC-GTGCCGGA--CCCCTT-ATA----TAA
gi|13 : CATTTTGTGTT--TCA-TGAAAACGACAGGGCTTAGAAGTCCAGATGGCGGTCCAAATGACA-TGTTTCA-TCT-----GTCCTAATATGGAT--AGTACATG--AGG-TGTCCTAATGCAATATGTT--AGA-
gi|14 : actgagcgaaaagtatgactgcaacccGA-CGT--TGC-ACGTGGAG--TCCTTT-ATA----TAAAAT-G-T-TTAAGTGGTATA-CA--AGAATGGC-TCTTAATtc
gi|15 : gagaaaaatcgagatgtgaactggtagaA-CGAC-TAAAA-CCAGCA-TA-TTCATA--T----AAA-AAATG-CC-AT---TTTT----CAT--GTTA-AAAT-TGCC-TCT-T-T-TTGT------G---ACC--TCAGT-GGCATGCAC-GTGTTA-C--CATGGCA--ACAGGGTTGtcgttacccaaagaaa
gi|16 : -AAAT-TGCA-CCT-TAC-C--T------G---ACC--TGAAA-AACATGCGT-GTGATA-C--AATCACACAATAGG--TGCGTT-GCAA-CC-A-AATCA--T--GG-TA-G-T-TTCACA-ATA---CT--TATAGGAACTTAAGT-
gi|17 : TGCCAAA--CCCCTT-ATA----TAAA-T-GTT-TTAAGCGGT-TA-TA-GAGAATTACTCTTTAAA
gi|2 : CAACAGTCACTGGAT-CACT--GTGAAAGACATTC-TTATATATTATGCGTATGGTTATGTACTCCAGTTTGGGTAGCATCATCTGTGTTACTGATTCTG-TTATCCA--CAGCACCA-ATAAATTTAAAATT--GAAAT---TAA--ATTTTCA-TT-CC-TGGCAACCAACATTAATTCTCTA-TATCAAA-TCTTGTTA--ATGATCT-AAA-GATAACATTCAATAGGAG-CTGTTAT-CAAGAT-A-TATACTTTG--TTTCAAATAAA--TTG-T--ATT-T-TAATTCCATTG--A-ATGTTACACAACTGA-A-TGCC--AAATCACGACGAAAT-GCATCATTTT-T-TT--CCA----GAAC-A-AG--CTTAGAAA-GCAGAT-----TTC-CACAACA-TGTGTTA-T-T-----T---TAATAT-GAG--A-TAC-T---AGGAT---CTAATGC----TGCT--TGA-CAAGCAT-TC--A-A----TATTT-C--AAGCTGCGT-GGATCATTATTTACCCACA--C--ATTC-AAT---T-TGCCTCTAAAAATGGCT-TTT-TG-T--A-AT-TGTC--AATACCAC-TCTTTCATAAGGAGAG-AAT-AAATGATG-----TGA-A----GAGATATTC-------------------AAC-CCAC-A-------ACT---ATG--TC-AAA-CT--A--------AC-ACT-A-G--A---ATA-T---TG-----AAA-A---TTAACATT-----T--TAA-TTA-TAT-T-T--TATGAAAATC---AAA-CGACTTAAAA-TCAGCA-TA-TTCGTA--T----AAACAAATG-T--AT---TTTT----CAT--GTTA-AAAA-TGCC-TCT-T-T-T--T------G---ACC--CT--T-GACACGCACTGTGTTA-C--T-CGGCA--A-AGGGTTGCCTAGGCAA-C--A-AATCA--T--GA-T--G-T-TCTACGTTTA---CT--AACGGGAAGT--AGTCCTATGTGCCAGAATTTGGCAGAAAAAATC-GGTGA-TGGTCTGC-GTGCCGGA--CCCTGT--TA----TAAA-T-G-T-TATAGTGG--TA-CA-G-GAATGGCTTCTTAAATCatgagtcaatttggaatc
gi|3 : ATTTCGAATTTAAAAAGAAGCAACAATTTTCG-TTTCCATG-------ACATTAATTCTC-A-TATCAAA-T-TTGCT---ATAA---------ATAATGATCAATAGCAGTTACTT-T-CAAGATAA-TATACTTTGA-TTTCAAATAAA-ATTG-T--ATT-T-AAATTGCGTTGAAATATA-TATGCACCTCT-GCTGTC--ACATCACAACGAAAT-GTATCATTTTGT-TT--CTA-TGGAAAC-AAAG--CTTAAAAG-ATAGAA-----TCC-CA-AATA-TGTTTCA-T-T-----G---TTATAT-GAT--AGTAC-T---AGG-T---CCAACGC---ATGTT--GAA-CAAGCA-----------------T-C--AAGCTGTATGGGGGGAGTTTTTATCCA-T--T--ATTT--AT---T-TGCCCCTAAAAATAGCTGTTT-TA-G--A-ATGTATCA-CATTTTCC-TCTTTTGCTGACAGA--AAT-AAACTA-------TGATA----GAAATATTC------------------AAAC-CAAT-A-------ATTA-AATA--TA-AAA-CTA-A--------GC-AATAA-A--A---ATA-C---TA-----AAA-A---TTAATATT-----TCATAA-TGA-TATAT-T--TTT---AATC---AAA-CAGC-TAAAA-TAATCA-TA-TTTGAT--T----AAA-AATTG-TC-A----TTTT----CAT---TTA-AAAATTGCC-TCT-T-T-TG-T------G---ACC--TGAAT-GATATGCAA-GTGTTA-C--CATGGCA--ACAAAGTTGCCTA-GCAACC--A-AATTA--T--GA-T--GAT-TGTACG-TTA---CT--AATGGGAAATTAAGT-CGATGTCCCG-AATTTG--AG----AATC-GGTGA-AGG--TGC-GTGCCAGA--CCCC
gi|4 : actgCAACAACCATTG-AT-CATT--GCGAAAGACTNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTGTTTATTCAGCACCA-ATAAATGTCAAATTTTGAAAT---CAACGATTTTCA-TT-CCATGGCAACCAACATTAATCCT-TA-TATCAAA-T-TTGTT---ATGATTTTAAA-GATAACA-TCAAT--TAGTCAATTAT-CAAGATAATTATACTTTGA-TTTCAAATAAA-TTTG-TTAATTAT-AAATTGCACTG-AA-ATG-TAC-C-ACTGA-ACTGCC--AAATCACGACGAAAT-GCATCATTTTGT-TT--CCA-TGG-AAC-ACAG--CTTAGAAG-CCAGAT-----TCC-CAACATG-TTTTTCA-T-T-----G---TTATAT-GAT--AGTAC-T---AGG-T---CTAATAA---ATG-T--TGATCAAG-AT-TC--A-A----TATTT-C--ATGCTGGGTGGGATAA-TGTTTACCCA-A--C--ATTCAAAT---C-TGCTTCT-AAACTGGCT-TTTATA-G--A-AT-TGTCA-AATACACC-TCTTT-GC-AAGAGAGAAAT-AACC--CA-----TGACA----GGAATATTC------------------AAAC-CCAT-A-------ACTA-AATG--TC-AAA-CTA-A--------AC-ACT-A-GA-A---ATG-T---TG-----AAA-A---TGAACATT-----TTATAA-TGA-TAT-T-T--TATG-AAATC---GAA-CAAC-TGAAA-CTAGCA-TA-TTCGGATTT----AAA-AAATG-TC-AT---TTT
gi|5 : attgaaatcctttcatttACAGTCATTG-ATGCATTTTGTGGA-GACATCCATGATATAATA-ATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGTTTAATCAGCACTATAGAAATTTCAAATTTGGAAAT---CAACCATTT-CT-TT-CCATGGCAACCAACATTAATTTTTTCCTGTCAAAAT-TTGTTTGTATAATTT-AAAAGATA-CATT-AATAGGAGTCAGTTATTCAAGATA--TATACTTTGACTTTCAAATAAAATTTGGT--ATTATGAAATTGCATTGAAA--TG-TACA-AACTGACACTGCTCGAAATTACGACGAAATTGTCCCATTTTGT-TT--CCAATGGAAACGACAG--CTTAGAAG-CC-GAT-----TCC--GCAATA-TGTTTCA-T-T-----G---TTATAT-GAT--AGTAC-G---AG--T---CTAATGC---ATGTTGATTA-CACGCAT-TC--A-AA---TATTTTC--AAGCTGGGTGGGATAATTGTTTACCCA-A-----ATTC-AACATGT-TGCCTTT-AAAAT-GCT-TTT-TA-G--A-AT-TGTCAGAATACACC-TCTTT--TCAAGACAG-AAT-AA
gi|6 : tattgaagaatccttttcatttctatatT-GAT--AGTAC-G---AGG-T---ATAATGC---ATGTT--GAA-CAAGCAT-AC--ATATAATTATTT-CAAAAG-TGAGTGGGAGAATTTTCCACCC--A--TCAATTC-AAT---TGTGTCTCTAAAA-------TTT-CA-G--ACA---GACA-GAAACG------TTC---------------AAACT-----------CA----TAAATAT---------------------------AT-A---------TA-CATGTATC-AAA-CTA-A--------AC-ACT-A-A--AAGTACA-T---TGTAGCTAGA-A---ATAACAAT-----TTATAA-TGA-TAT-T-T--CATG-CAATC---AAA-CAAC-TAAAA-TCAGCA-TA-TTCGAC--T-----AA-AATTG-TC-AT---TGTT-----AT--GTTA-AAAT-TGCA-TTTAT-T-T--T------T---ACC--TCAGT-GTCATGCAC-GTGTTG-C--CATGGAA--ACAGAGCTTCCTA-GCAA-C--C-AATCA--C--GATT--G-T-TCTGCG-TTAACTTT--GA--GAAAATTA--T-CCTTGTGTCA-AATTTG--A-AAAATGTC-GGTAA-CGG--TGC-GTGCCGGA--TCCCTG-ATT----TAGT-T-T-TGTTAAGTGAT-CA-CA-
gi|7 : tt-TGTCA-AATACCCC-TCTTTT--CAAGAGAG-AATTAAATTA-------TGACA----GAGATATTCA-----------------AA-C-CCAT-A-------ACTA-AATG--TCCAAA-CTA-A--------ACGACT-A-G--A---AAA-T---TG-----AAA-AA--TTAACATT-----TTATAAATGA-CTT-T-T--TATGAAA--T---AAA-CGAC-TAAA--CCAGCA-TA-T-CGTA--T----AAAGAAATG-TCCAT---TTTT----TCT--GTTA-AAAAATGCC-TCT-T-T-T--T------GTGAACC--TCAGT-GA-ATGCAC-GTGTTAAC--CATGGCA--ACAGGGTTGCCTA-GCAA-C--C-GATCA--T--GA-G--G-T-T-TACG-CTA---CT--TACGGGAAGTTAAGT-CGATGT-CAA-AGTTTG--AG-AAAAATC-GG-GA-TGG--TGCTGTGCCGGAACCCCCTG-ATAGGGTTAAA-TGG-T-TTAAGTGGT-TAGCA-GAG-ATGGCTGCTTGA
gi|8 : AA-T---TTGACATT-----TTATAAGTGAATAT-T-T--AATGAGA--T---AAA-CAAC-TAAAAACCAGCA-TAATTCG-A--T-----------TT-TA-AT---TTTT----CATC-GTTA-AAAA-TGCCCTCT-T-TAG--T------G---ACG--CTAGT-GAC-T-CAC-GTGTTA-CG-CATGGCA--ACAGGGTTGC-TA-GCAA-CC-A-AATCA--T--GA-TTGG-T-TCTAGG-TTA---CCTAAATGGTAAATTAAGT-CGATGTTGCA-AATT-G--AGAAAAA-TC-GATGA-CGG--TGC-GTGCTGGA--CCCCTTAATA----TAAA-T---T-TTAAGTGGT-TAGCAGGAGAATGGC-TCTTAACTC
gi|9 : TAC-T---GGG-T---TTAATGC---ATGTT--TAA-CAAtttcatcaagtttgtaaagaaaaattttcatagcatatgtaaattggaaa
gi|9 : a-AAT---T-TGTCTTTAAAT-TAGCT-TTT-AA-T--A-ATGTATCA-AATGCGCA-TCTTTTGGAAACAAA--AAT-AAACTACG-------AGA----GAAATATTCA-----------------AAatttgtctttaaattagcttttaataatgtatcaaatgcgcatcttttggaaacaaaaataaactacgagagaaatattcaaactgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa
gi|9 : atactgggtttaatgcatgtttaaca-AAA-ATA-A--------ACTACG-A-G--AGAAATA-T---TC-----AAA-----CTGACA---------AGAA-TGA--AT-TGTAATATGAAT-TC---AAA-GAAC-CAAG--CCAAAA--A-TT---------------AAATGGTC-AT---TTTTTGGGCATA-GTT-------T-CC-TCTAT-T-G--T------G---ACT--GTTTT-GATATTTAC-ATTTTA-T--CGTCGCA--ACGAAGGTGCATA-GCAA-C--A-AAACAATT--G-----G-T-TTTGCA-TCA---CT--AActgacaagaatgaattgtaatatgaattcaaagaaccaagccaaaaattaaatggtcattttttgggcatagtttcctctattgtgactgttttgatatttacattttatcgtcgcaacgaaggtgcatagcaacaaaacaattggttttgcatcactaa