lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 44444444 222 666666666666 22 1 22 333333 1 22 1 1 11 2222222 22222 1 22222222 11111111111111111111111111111111111111111111111111 3333 111 4444 1 1 11 666666666666666 1 222 1 1 333 1 44444444444 1111 1111 11111 22222222 2222 22222 11 444444444 1 11 1 1 1 222222222 1 111 22 11 33 1111 22222 22222 2 2222222 111 11 4444
lowQualScore : 66666666 111 000000000000 6 1 22 6 3 6 88 6 8 888888 3 00 3 7 6 1 88 9999999 6 33333 2 7 6 11111111 77777777777777777777777777777777777777777777777777 7 6 9999 777 0000 3 3 88 666666666666666 3 333 3 3 5 111 0 2 6 6 22222222222 6666 5 5 2222 44 1 6 66666 6 22222222 3 3333 00000 6 11 5 88 8 777777777 2 0 77 3 5 2 0 0 222222222 0 555 0 33 33 8 6 0 11 3333 55555 6 0 00000 8 1 888 3 6 3 77 0 777 4 4 0000000 4 222 11 0000 6
lowQualScore : ........ ... ............ . . .. . . . .. . . ...... . .. . . . . .. ....... . ..... . . . ........ .................................................. . . .... ... .... . . .. ............... . ... . . . ... . . . . ........... .... . . .... .. . . ..... . ........ . .... ..... . .. . .. . ......... . . .. . . . . . ......... . ... . .. .. . . . .. .... ..... . . ..... . . ... . . . .. . ... . . ....... . ... .. .... .
lowQualScore : 55555555 333 333333333333 7 0 77 7 3 7 33 0 3 333333 3 77 3 0 0 0 33 0000000 7 00000 3 3 7 00000000 77777777777777777777777777777777777777777777777777 3 0 0000 777 7777 3 3 33 000000000000000 3 333 3 0 5 000 0 5 7 7 33333333333 3333 7 7 1111 33 0 7 77777 7 88888888 2 3333 33333 7 00 6 88 0 000000000 2 0 00 2 0 5 0 0 000000000 0 888 8 22 88 0 5 3 00 3333 00000 7 2 00000 0 4 666 2 7 7 55 4 888 4 4 6666666 4 222 99 7777 7
consensus : NTGGGCACTCAACTTTACTTGTTTT-CCCCG-T-GATN---AGACCTGCTGCTGAA-TGGGCAA-TTTGTTTTGGCAA--TTCACAATATG------CACT-AC-ATGT-ATGAACAGCAACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCCC--CCC-CTCC-ACCCGGGGCGGTCGGGTGTCTGACGT-G-GAG--TTA-AG------------T-GTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAAAATATT--------GATT-CAT---GAA-TCTGTNTACCATTATCGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TC---AATTTTTGACC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAGAAA----AATAGA---CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------CCCCCCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-G--CACGGTACTAAACA-CGAGTGT-TTCGACTAATAAAT--GC-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGTGGGATAGGTAT-----TTT-TTTAATT-TACGGG-CT-TATTTTTTTGTAATCAACAATAAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCCG---TGC-GTTAC
Reference ( gi|3 ) : ATAGGCACTAAA--TTACTTGTTAT-CCCAGTT-GATAG--AGACCTGCTGTTGAAATGGGCAA-TTTGTTTTGGCAA-GTTTACAAAATG------CACT-AC-ATGT-ATGAACAGCATCTGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCCCCC--CCCCCTCC-CCCCGGGGTGGTGGGGTATCTGACGT-G-GGG--TTA-AG------------T-ATGGT------G-ATTT--ATA-CGGCT-----GGCATCCTT--T-AATG-A-TATGTTTTG--GGGCAA-TTTA-GAA--AGTAAAATATT-------AAATT-CAT---GAA-TCTGTTTACCAT-A-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TA---AATTTTTGATC--ATCA-TT-CCC----CCTAGTTCGT-ATT-----TTAT-TTCAATT-TCTAAATGAAAACAAGAAA----AATATA---CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTGTTTCCCCAAGTA-AGATGCT-TTTATGCTACTTTTTCCA-AGTTTAACGT-CAAC-G--CAGGATACTAAACA-CGAGTGT-TTTGAC-AATAAAT--GC-AAAACAATTCCTATTTCAATGTGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGTGGGATAGGTAT-----TTT-TTTAAAT-TACGGG-CTATATTTTTTTGTAATCAACAATAAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC----TGC-GTTAC
gi|1 : TGGGCACTCAACTTTACTTGTTTTTCCCGGAT-G-TAC--AGAC-TGCTGCTGGAATGGGCAA-TTTGTTTTGGCAATGTTCACAAACTG------CACT-AC--TGT-ATGAACAGCAACTAT
gi|2 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttcAGGCAC--AA--T-ACTTGTTTT-TCCCG---GATTGTCAGACCTGCGCTTGAA-TGAGCAAGTTTGTTTTGGCAA--TTCACAATATG------CACG-ACGATGTAATGAACactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccgggcctctccccacccccctccaccccgggggtcgggtgtctgagtgggagtttaagatagtattgggatgtggtactaacgatttatatcggctctttcggcatttttcttaatgatatgtttttgggcaatttagaaagtaattttctcttcaagattcatgaaatctgtttaccattacgttacaactactcgaaatcctttcacccagacgttacattcaatttttgatcagcatttccctctagtccttcatgttatcttctattatcgctatgaaaacaagaaaaaatagaccatttaatttcttcatatactaatccagaacaatttttgcccaagtgagatgctatttatgcgattttccaagtttaacgtcaacgcccagcactaaacaccgagtgtgttcgactaaattgacaaaaacaactctattccaatgtgtatacaaactgaaggataatcttcattaccgtgggataggtattttttaactttacgggacttatttttttgaatcacaataattctgctcactcgtgtgtctgtcggactttcgaatctttatccgtgcgttaccatcttttcacatggtcacga
gi|4 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataTTTT-CCCTGTTCGATC---AGACCTTCTGCTGA--TGGG--A-TTTGTTTT-GCAG-CTTCACAATATGGCAACATACTGAT-ATGA-ATGAACctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccgggcctgccccccccaccactcggggtggggtgttctggcgttgtgagtcacagttatgatgattactaggctggcatctttatgcagatgtttgcaatttaagaagaagtaaaaatattcatctagaatctgtgttcatatcgttacagaccatcgaaatcctttcacccacgtgtacagccaattttggaccgaggcattccctagtcatattttatttttaattctagagaacaagaaactgatgacatttattcttcattaagtactaacaaacaaccccccccccccccccaagtagagaagctttatgcgcctttttccacagtttaacgtacaactgcacggtactaaacatgaatttttgactaataaatgcaaaa
gi|1 : tgtGGGCCTCTCCCCACCCCCCTCCACCCCGGGG--GTCGGGTGTCTGA-GT-G-GGAGTTTA-AGATAGTATTGGGAT-GTGGTACTAACG-ATTT--ATATCGGCTCTTTCGGCATTTTTCTT-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAA--TTTTCTCTTCAAGATT-CAT---GAAATCTGTTTACCATTA-CGTTACA-ACTACTCGAAATCCTTTCACCCAGACGT-TACAT----TC---AATTTTTGATC--AGCATTT-CCC----TCTAGTCCTTCATG-----TTATCTTCTATTATCGCTATGAAAACAAGAAA----AA-ATAGACCATTTAATTTCTTCAT--A-TACTAATCCAGAA-CAA------TT-TTTGCCCAAGTG-AGATGCTATTTATGCGA--TTTTCCA-AGTTTAACGT-CAAC-GCCCAG--CACTAAACACCGAGTGTGTTCGAC---TAAATTGACAAAAACAACT-CTATTCCAATGTG-TAT-ACAAACTG-AAGGAT-A---ATCTTCATTACCGTGGGATAGGTAT-----TTT-TTAACTT-TACGGGACT-TATTTTTTTG-AATC-ACAATAAT---TCTGC-TCAC--------TCGT-GTG-T---CTGTCGGA-CTTTCGAATCTTTATCCG---TGC-GTTACcggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccggagcctgcccccacctccaccgggcgtttgggtatcgacgtggagttagaagttgtgcattttaatgtgcgtggctcttttgaatgagtatgtttttttgggcaaatttagaaagtaaaatattcaattccatgaatttgat
gi|2 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttctgggcactcaactttacttgtttttcccggatgtacagactgctgctggaatgggcaatttgttttggcaatgttcacaaactgcactactgtatgaacagcaactatactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccGGGCCTGCCCCC--CCCAC--C-ACTCGGGGTGG-GGTGT-TCTGGCGTTGTGAG--TCACAG------------TTATGAT------G-ATTA--CTA--GGCT-----GGCATCTTT-----ATGCA-GATGTTT------GCAA-TTTAAGAAGAAGTAAAA-AT----------ATT-CATCTAGAA-TCTGTGT-TCAT-ATCGTTACAGACCA-TCGAAATCCTTTCACCCA--CGTGTAC-------AGCCAATTTTGGACCGAGGCA-TT---C----CCTAG-TCAT-ATT-----TTAT-TTTTAAT-TCTA---GAGAACAAGAAACT--GATG-A---CATTT-A-TTCTTCATTAAGTACTAA--CA-AA-CAACCCCCCCCCCCCCCCCAAGTAGAGAAGC--TTTATGCGCCTTTTTCCACAGTTTAACGTACAACTG--CACGGTACTAAACA-TGAAT-T-TTTGACTAATAAAT--GC-AAAAcatcttttcacatggtcacga
gi|4 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaggcacaatacttgtttttcccggattgtcagacctgcgcttgaatgagcaagtttgttttggcaattcacaatatgcacgacgatgtaatgaacctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccGAGCCTGCCCCC--ACC--TCC-ACC--GGGCGTTTGGGTATC-GACGT-G-GAG--TTA-GA------------A-GTTGT------GCATTTTAATG-TGCGT-----GGC-TCTTT--TGAATG-AGTATGTTTTTTTGGGCAAATTTA-GAA--AGTAAAATATT-------CAATTCCAT---GAA-TTTG
gi|16 : tgtttttccctgttcgatcagaccttctgctgatgggatttgttttgcagcttcacaatatggcaacatactgatatgaatgaaccggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccgA-ACTACTTAAAATCCTTTCACCCAG-CGT-TAC-TTCTGTC---AATTTTTGATC--AGCA-TT-CCC----CCTAGTat
gi|5 : -ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-A----TC---AATTTTTGACC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-C------GAA-----GAAA----AATAGA---CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAT------TTTTTCCCCCAAGTA-AGATGCT-TTTATGTGACTTTTTCCA-AGTTTAACAT-CAAC-G--CACGGTACTAAACA-CGAGTG--TTTGACTAATAAAT--GC-AAAACAATTCCCAATTCAATGTGATAT-ACAGACT-AGAGGATAA-T-GCCTTCATT-CCGTGGGATAGGTAT-----TTT-TTTAAAT-TACAGG-CT-TATATTTTTGTAATCAACAATAAT---TCT-C-TCACAAT-----TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCCG---TGC-GTTACc
gi|6 : TTTCACCCAG-CGT-TAC-T----TC---AATTTTTGACC--AGCA-TTACCC----CCTAGGTCGT-ACT-----TTGT-TTCAATT-TCTAGACGAAAACAAGAAA----AATAGA---CATTT-ATTTCTTAAT--ATTACTAAT-CAGATTCCA------CCCCCCCCTCCAGTA-AGATGCC-TTT--GCGACTTTTTCCA-AGTTTAATGT-CAAC-A--CGCGGTACTAAACA-CGAGTGT-TTGAAT-AATAAAT--GC-AAAACAATACCTATTTCAATGTCATAT-ACAGACTGAAA-GATAA-T-GCCTTTATT-CCGTGGGATATATAT-----ATT-TTTAATT-CAC----TTATA--TTTTTGTAATCAACAATAAT---TCT-C-TCACA-------TCGT-GTGTT---TTGTCGG--CTTTTGAATCTTTAGTCG---TGC-GTTACcgaatcttttcaccatggtcacgatgg
gi|8 : CACTTAG-TGT-TAC-T----TT---AGATTTTGATC--AACA-TT-CCC----CCTCGTCCTT-TTTGGGGCTGAT-TTCA------TAGATGAAA--AACAAATGCCAGTAGG---CATCT-ATTTCTTATT--ATTGCTAAT-CAGAA-
gi|14 : ATC--AGCA-TT-CCCTGGCCCTAGTACGT-ATT-----TTAT-TTCAATT-CTTAAATGAAAACAAGAAA----AATAGA---CATTT-ATt
gi|17 : -AAAATAATTTCTATTCAAATGAGATATA-CAAACTCAA-GGAT-A-TTGCCTTCATT-CCAT
gi|15 : TTCAATGCGATATA-TAGACTGAA-GGAT-AAT-GCCTTCATT-CCGTGGGATA
gi|7 : atgtgaagtaattttaaacgaTTCGATGCGATGTA-CAGACT-AAGGAAC-A-----ATTCAAT-TTGTAGGGTTAGTACATGCATGT-GTAAAACGTATGGG-CT-TACTTGTTT-TAATTAACGCTAAA---TC--C-TCATC-------TCGT-CTGCT---CCGATAG--CCTTTGAATTTGTAGTC----
gi|9 : agTAT-----TTTCTTTAATT-TATGGG-CT-TATATTTTTGTAATCAACAATAAT---TCT-C-ACACA-------TTGA-GTGTT---CTGTCGG--CTTTTGAAgtgtactgcttaaatcgagtgagtacttgtatcttgtcaccatggtctacagtgaaacag
gi|11 : G-CTATAGTTTTTTGTAATCAACAATAA----TCT-CTTCACA-------TCGT-GTGTT---CTGTCGG--ATTTTGAATC-TTAGCCG---TGC-GTTACataccggatcttttcaccatggtcacgatg
gi|10 : TTTTCTGAAATCAACAACAATAAATTT-C-TCATACAAAAATTCGTAGAATTTAACTGTCGGACCTAATGAATCTTTAGCCACAGTGCAGTTACcgggtcttttcaccatggtcacggt
gi|18 : taTGTAATCAACGATAAT---TCT-C-TCACA-------TCTT-GTGTTC--CTGTCcggaaacctt
gi|13 : ACAATAAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCCG---TGC-GTTACa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TACTTTTAACAAACAATCAATCAATCCTCAGCTTTCGTGTTTCGTCCTCTTTTGAGTTTTGACCGTGTGTTACTTTTCATAACACTCGCAATAGCCCAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 33 55555555555555 2 11 1 33 222222 1 11 1 1 11 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 222 1 1 1 1 1 111 55555555555555 222222 1 11 11 22222 2222 111 2222 1 1 11 111 55555555555 1 1 333 222222 111111 11111 2222 22222222 11 1 22 222 22222 1 111 1111111 111
lowQualScore : 44 00 0 77777777777777 2 3 0 33 2 0 2 33 4 888888 0 33 0 0 00 0 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 222 55 0 99 0 3 2 0 0 0 111 88888888888888 888888 0 33 66 55555 3 7777 111 0000 0 0 33 000 11111111111 0 3 0 1 7 888 8 5 5 111111 66 5 111111 5 44444 5 777 3 1 0000 5 5 5 99 6 6 44444444 8 11 0 8 8 8 8 8 6 0 0 8 6 3 2 44 7 7 5 222 5 5 00000 6 2 1 5 1 0 3 222 3 3 6666666 3 000 99 777 5
lowQualScore : .. .. . .............. . . . .. . . . .. . ...... . .. . . .. . . ............................................................................................................................................... ... ... .. . .. . . . . . . ... .............. ...... . .. .. ..... . .... ... .... . . .. ... ........... . . . . . ... . . . ...... .. . ...... . ..... . ... . . .... . . . .. . . ........ . .. . . . . . . . . . . . . . .. . . . ... . . ..... . . . . . . . ... . . ....... . ... .. ... .
lowQualScore : 00 33 2 22222222222222 5 2 0 22 5 0 5 88 0 888888 0 22 0 0 88 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 000 00 5 88 0 2 5 0 0 0 000 88888888888888 888888 0 88 55 00000 2 0000 000 0000 0 0 88 222 55555555555 0 2 0 0 3 333 0 7 7 777777 99 0 999999 7 33333 7 444 6 4 0000 7 7 7 22 7 7 00000000 0 88 8 0 0 0 0 0 4 8 8 0 7 2 7 00 9 1 7 111 7 7 00000 7 2 0 7 4 8 6 777 6 6 8888888 6 000 55 888 0
consensus : NTGGGCACT-AA--TTACTTGTTTTCCCCG---TT-GAT---C-AGACCTGCTGCT-GAA-TGGGCAA-TTTGTTTTGGCAAN-TTCACAANATG------CACT-AC-ATGT-ATGAA-CG-GCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCCC---CCCC-TCCACCCGGGGCGGTCGGGTGT-CTGACGT-G-G-AGTT-A-AG------------T-GTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAAAA-TATTC-------AA-TT-CATGAA-TCTGTTTACCAT-A-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATCA--GCATT-CCC----C-CTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAGAAA----AA-TAGAC-ATTTA-TTTCTTCAT--ATTACTAATC-AGAA-CAATTCT------TCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
Reference ( family-198 ) : NTGGGCACTCAACTTTACTTGTTTTCCCCG---T--GAT---N-AGACCTGCTGCT-GAA-TGGGCAA-TTTGTTTTGGCAA--TTCACAATATG------CACT-AC-ATGT-ATGAA-CA-GCAA-C-TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCCC---CCCC-TCCACCCGGGGCGGTCGGGTGT-CTGACGT-G-G-AGTT-A-AG------------T-GTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAAAA-TATT--------GA-TT-CATGAA-TCTGTNTACCATTATCGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGACCA--GCATT-CCC----C-CTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAGAAA----AA-TAGAC-ATTTA-TTTCTTCAT--ATTACTAATC-AGAA-CAACCCC------CCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAATTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
gi|1 : TGGGCACTCAACTTTACTTGTTTTTCCCG------GATGTAC-AGA-CTGCTGCTGGAA-TGGGCAA-TTTGTTTTGGCAATGTTCACAAACTG------CACT-AC--TGT-ATGAA-CA-GCAA-C-TAT
gi|1 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttcGGGCCTCTCCCCACCCCCC-TCCACCCCGGG-GGTCGGGTGT-CTGA-GT-G-GGAGTTTA-AGATAGTATTGGGAT-GTGGTACTAACG-ATTT--ATATCGGCTCTTTCGGCATTTTTCTT-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAA---TTTTCTCTTCAAGA-TT-CATGAAATCTGTTTACCATTA-CGTTACA-ACTACTCGAAATCCTTTCACCCAGACGT-TACAT----TCAATTTTTGATCA--GCATT-TCC----CTCTAGTCCTTCATG-----TTATCTTCTATTATCGCTATGAAAACAAGAAA----AAATAGACCATTTAATTTCTTCAT--AT-ACTAATCCAGAA-CAATTTT------TGCCC-AAGTG-AGATGCTATTTATGCGA--TTTTCCA-AGTTTAACGT-CAAC-GCCCAGCACTAAACACCGAGTGTGTTCGACTA--AATTGACAAAAACAACT-CTATTCCAATGTG-TAT-ACAAACTG-AAGGAT-A---ATCTTCATTACCGT-GGGATAG-----GTATTTT-TTAACTTTACGGGACT-TATTTTTTTG-AATC-ACAAT-AAT---TCTGC-TCAC--------TCGT-GTG-T---CTGTCGGA-CTTTCGAATCTTTATCC---GTGC-GTTACactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccgggcctctccccacccccctccaccccgggggtcgggtgtctgagtgggagtttaagatagtattgggatgtggtactaacgatttatatcggctctttcggcatttttcttaatgatatgtttttgggcaatttagaaagtaattttctcttcaagattcatgaaatctgtttaccattacgttacaactactcgaaatcctttcacccagacgttacattcaatttttgatcagcatttccctctagtccttcatgttatcttctattatcgctatgaaaacaagaaaaaatagaccatttaatttcttcatatactaatccagaacaatttttgcccaagtgagatgctatttatgcgattttccaagtttaacgtcaacgcccagcactaaacaccgagtgtgttcgactaaattgacaaaaacaactctattccaatgtgtatacaaactgaaggataatcttcattaccgtgggataggtattttttaactttacgggacttatttttttgaatcacaataattctgctcactcgtgtgtctgtcggactttcgaatctttatccgtgcgttaccatcttttcacatggtcacga
gi|10 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttctgggcactcaactttacttgtttttcccggatgtacagactgctgctggaatgggcaatttgttttggcaatgttcacaaactgcactactgtatgaacagcaactatactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccTTTTCTGAAATCAACAAC-AATAAATTT-C-TCATACAAAAATTCGTAGAATTTAACTGTCGGACCTAATGAATCTTTAGCCACAGTGCAGTTACcatcttttcacatggtcacga
gi|11 : taG-CTATAGTTTTTTGTAATCAACAAT-AA----TCT-CTTCACA-------TCGT-GTGTT---CTGTCGG--ATTTTGAATC-TTAGCC---GTGC-GTTACcggaaacctt
gi|12 : TTTTAACAAACAATCAATCAATC--C-TCAGC-------TTTC-GTGTT---TCGTCCT--CTTTTGAGT-TTTGACC---GTGT-GTTACcgggtcttttcaccatggtcacggt
gi|13 : tacACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACttttcataacactcgcaatagcccac
gi|14 : ATCA--GCATT-CCCTGGCC-CTAGTACGT-ATT-----TTAT-TTCAATT-CTTAAATGAAAACAAGAAA----AA-TAGAC-ATTTA-Tcgaatcttttcaccatggtcacg
gi|15 : TTCAATGCGATATA-TAGACTGAA-GGAT-AAT-GCCTTCATT-CCGT-GGGATA
gi|16 : atgtgaagtaattttaaacgaA-ACTACTTAAAATCCTTTCACCCAG-CGT-TAC-TTCTGTCAATTTTTGATCA--GCATT-CCC----C-CTAGTC
gi|17 : -AAAATAATTTCTATTCAAATGAGATATA-CAAACTCAA-GGAT-A-TTGCCTTCATT-CCAT-
gi|18 : TGTAATCAACGAT-AAT---TCT-C-TCACA-------TCTT-GTGTTC--CTGTC
gi|2 : GGCAC--AA---TACTTGTTTTTCCCGGATT--G-T---C-AGACCTGC-GCTTGAA-TGAGCAAGTTTGTTTTGGCAA--TTCACAATATG------CACG-ACGATGTAATGAA-CCTGCAAGC-TATa
gi|2 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaGGGCCTGCCCCC---CCCA--CCACTCGGGGTGG---GGTGTTCTGGCGTTGTG-AGTC-ACAG------------TTATGAT------G-ATTA--CTA--GGCT-----GGCATCTTT-----ATGCA-GATGTTT------GCAA-TTTAAGAAGAAGTAAAAATATT--------CA-TC-TA-GAA-TCTGTGT-TCAT-ATCGTTACAGACCA-TCGAAATCCTTTCACCCA--CGTGTACAG----CCAATTTTGGACCGAGGCATT-CCC-------TAGTC-AT-ATT-----TTAT-TTTTAAT-TCTAGA---GAACAAGAAACT--GA-T-GAC-ATTTA-TT-CTTCATTAAGTACTAA-C-A-AA-CAACCCCCCCCCCCCCCCCAAGTAGAGAAGC--TTTATGCGCCTTTTTCCACAGTTTAACGTACAACTGCACGGTACTAAACA-TGAAT-T-TTTGACTAATAAATG-C-AAAAactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccgggcctgccccccccaccactcggggtggggtgttctggcgttgtgagtcacagttatgatgattactaggctggcatctttatgcagatgtttgcaatttaagaagaagtaaaaatattcatctagaatctgtgttcatatcgttacagaccatcgaaatcctttcacccacgtgtacagccaattttggaccgaggcattccctagtcatattttatttttaattctagagaacaagaaactgatgacatttattcttcattaagtactaacaaacaaccccccccccccccccaagtagagaagctttatgcgcctttttccacagtttaacgtacaactgcacggtactaaacatgaatttttgactaataaatgcaaaa
gi|3 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaggcacaatacttgtttttcccggattgtcagacctgcgcttgaatgagcaagtttgttttggcaattcacaatatgcacgacgatgtaatgaacctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccTAGGCACTAAA--TTACTTGTTATCCCAG---TT-GAT---AGAGACCTGCTGTT-GAAATGGGCAA-TTTGTTTTGGCAAG-TTTACAAAATG------CACT-AC-ATGT-ATGAA-CA-GCAT-C-TGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCCCCC---CCCCCTCCCCCCGGGGTGGTGGGGTAT-CTGACGT-G-G-GGTT-A-AG------------T-ATGGT------G-ATTT--ATA-CGGCT-----GGCATCCTT--T-AATG-A-TATGTTTTG--GGGCAA-TTTA-GAA--AGTAAAA-TATT--------AAATT-CATGAA-TCTGTTTACCAT-A-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TAAATTTTTGATCA--TCATT-CCC----C-CTAGTTCGT-ATT-----TTAT-TTCAATT-TCTAAATGAAAACAAGAAA----AA-TATAC-ATTTA-TTTCTTCAT--ATTACTAATC-AGAA-CAATTGT------TTCCCCAAGTA-AGATGCT-TTTATGCTACTTTTTCCA-AGTTTAACGT-CAAC-GCAGGATACTAAACA-CGAGTGT-TTTGAC-AATAAATG-C-AAAACAATTCCTATTTCAATGTGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACGGG-CTATATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC----TGC-GTTAC
gi|4 : aTTTTCCCTG---TTCGAT---C-AGACCTTCTGCT-GA--TGGG--A-TTTGTTTTG-CAGC-TTCACAATATGGCAACATACTGAT-ATGA-ATGAACCG-GCAA-CATAT
gi|4 : tgtGAGCCTGCCCCC---ACC--TCCACC--GGGCGTTTGGGTAT-C-GACGT-G-G-AGTT-A-GA------------A-GTTGT------GCATTTTAATG-TGCGT-----GGC-TCTTT--TGAATG-AGTATGTTTTTTTGGGCAAATTTA-GAA--AGTAAAA-TATTC-------AA-TTCCATGAA-TTTGatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccggagcctgcccccacctccaccgggcgtttgggtatcgacgtggagttagaagttgtgcattttaatgtgcgtggctcttttgaatgagtatgtttttttgggcaaatttagaaagtaaaatattcaattccatgaatttgat
gi|5 : tgtttttccctgttcgatcagaccttctgctgatgggatttgttttgcagcttcacaatatggcaacatactgatatgaatgaaccggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccg-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-A----TCAATTTTTGACCA--GCATT-CCC----C-CTAGTCCGT-ATT-----TTAT-TTCAATT-C---G--------AAGAAA----AA-TAGAC-ATTTA-TTTCTTCAT--ATTACTAATC-AGAA-CATTTTT------TCCCCCAAGTA-AGATGCT-TTTATGTGACTTTTTCCA-AGTTTAACAT-CAAC-GCACGGTACTAAACA-CGAGTGT-TT-GACTAATAAATG-C-AAAACAATTCCCAATTCAATGTGATAT-ACAGACT-AGAGGATAA-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACAGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACAAT-----TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACat
gi|6 : TTTCACCCAG-CGT-TAC-T----TCAATTTTTGACCA--GCATTACCC----C-CTAGGTCGT-ACT-----TTGT-TTCAATT-TCTAGACGAAAACAAGAAA----AA-TAGAC-ATTTA-TTTCTTAAT--ATTACTAATC-AGATTCCACCCC------CCCCTCCAGTA-AGATGCC-TTT--GCGACTTTTTCCA-AGTTTAATGT-CAAC-ACGCGGTACTAAACA-CGAGTGT-TT-GAATAATAAATG-C-AAAACAATACCTATTTCAATGTCATATA-CAGACTGAAAG-AT-AAT-GCCTTTATT-CCGT-GGGATAT-----ATATATT-TTTAATTCAC-----T-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---TTGTCGG--CTTTTGAATCTTTAGTC---GTGC-GTTACcgaatcttttcaccatggtcacgatgg
gi|7 : TTCGATGCGATGTA-CAGACT-AAGGAAC-A-----ATTCAAT-TTGTAGGGTTAGTACATGCATGTG-TAAAACGTATGGG-CT-TACTTGTTT-TAATTAACGCT-AAA---TC--C-TCATC-------TCGT-CTGCT---CCGATAG--CCTTTGAATTTGTAGTC---GTG
gi|8 : agCACTTAG-TGT-TAC-T----TTAGATTTTGATCA--ACATT-CCC----C-CTCGTCCTT-TTTGGGGCTGAT-TTCA------TAGATGAAA--AACAAATGCCAG-TAGGC-ATCTA-TTTCTTATT--ATTGCTAATC-AGAA-tactgcttaaatcgagtgagtacttgtatcttgtcaccatggtctacagtgaaacag
gi|9 : TATTTTCTTTAATTTATGGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-ACACA-------TTGA-GTGTT---CTGTCGG--CTTTTGAAt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 3333333333333 1 1111 1 22 222222 1 11 1 2 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 11 11111 1 1 1 1 111 666666666666 222222 1 11 11 22222 2222 111 2222 1 1 11 1 111 111 1 1 1 1 222222 1111 11111 2222 222222222 11 1 22 222 22222 1 111 1111111 111
lowQualScore : 444444 7 0 2222222222222 2 3 0 4444 2 0 2 00 1 888888 0 33 0 0 4 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 777 22 55 22222 0 3 2 0 0 0 111 111111111111 888888 0 33 66 55555 3 7777 111 0000 0 0 33 0 777 777 0 3 0 7 3 3 8 5 5 111111 66 5 5 0000 3 5 44444 5 9999999 1 5 0000 5 5 99 3 6 6 555555555 8 11 0 8 8 8 8 8 6 0 0 8 6 3 2 44 7 7 5 222 5 5 00000 6 1 1 5 1 0 3 222 3 3 6666666 3 000 99 777 5
lowQualScore : ...... . . ............. . . . .... . . . .. . ...... . .. . . . . . ............................................................................................................................................ . ... .. .. ..... . . . . . . ... ............ ...... . .. .. ..... . .... ... .... . . .. . ... ... . . . . . . . . . ...... .. . . .... . . ..... . ....... . . .... . . .. . . . ......... . .. . . . . . . . . . . . . . .. . . . ... . . ..... . . . . . . . ... . . ....... . ... .. ... .
lowQualScore : 333333 3 2 0000000000000 5 2 0 2222 5 0 5 88 0 888888 0 22 0 0 2 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555 00 00 88888 0 2 5 0 0 0 000 222222222222 888888 0 88 55 00000 2 0000 000 0000 0 0 88 0 555 000 0 2 0 3 3 3 0 7 7 777777 99 0 0 6666 4 7 33333 7 9999999 4 7 0000 7 7 22 2 7 7 222222222 0 88 8 0 0 0 0 0 4 8 8 0 7 2 7 00 9 1 7 111 7 7 00000 7 0 0 7 4 8 6 777 6 6 8888888 6 000 55 888 0
consensus : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCGGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
Reference ( family-198 ) : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-NTTCACAANATG------CACT-AC-ATGT-ATGAA-CGGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
gi|1 : TGGGCACTCAACTTTACTTGTTTTTCCCG-----GATGTAC-AGAC-TGCTGC-TGGAA-TGGGCAA-TTTGTTTTGGCAATGTTCACAAACTG------CACT-AC--TGT-ATGAA-CAGCAA-C-TAT
gi|1 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttcGGGCCTCTCCC-CACCCCCCTCCACCCCGGG-GGTCGGGTG-TCTGA-G-TG-GGAGTTTA-AGATAGTATTGGGATGTGGTACTAACG-ATTT--ATATCGGCTCTTTCGGCATTTTTCTT-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AATTTTCTCTTCAAGATT-CATGAAATCTGTTTACCATTA-CGTTACA-ACTACTCGAAATCCTTTCACCCAGACGT-TACAT----TCAATTTTTGATC--AGCATTT-CCC----TCTAGTCCTTCATG-----TTATCTTCTATTATCGCTATGAAAACAAGAAAA----AATAGACCATTTAATTTCTTCAT--A-TACTAATCCAGAA-CAA------TT-TTTGCCCAAGTG-AGATGCTATTTATGCGA--TTTTCCA-AGTTTAACGT-CAAC-GCCCAGCACTAAACACCGAGTGTGTTCGACTA--AATTGACAAAAACAACT-CTATTCCAATGTG-TAT-ACAAACTG-AAGGAT-A---ATCTTCATTACCGT-GGGATAG-----GTATTTT-TTAACTTTACGGGACT-TATTTTTTTG-AATC-ACAAT-AAT---TCTGC-TCAC--------TCGT-GTG-T---CTGTCGGA-CTTTCGAATCTTTATCC---GTGC-GTTACactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccgggcctctccccacccccctccaccccgggggtcgggtgtctgagtgggagtttaagatagtattgggatgtggtactaacgatttatatcggctctttcggcatttttcttaatgatatgtttttgggcaatttagaaagtaattttctcttcaagattcatgaaatctgtttaccattacgttacaactactcgaaatcctttcacccagacgttacattcaatttttgatcagcatttccctctagtccttcatgttatcttctattatcgctatgaaaacaagaaaaaatagaccatttaatttcttcatatactaatccagaacaatttttgcccaagtgagatgctatttatgcgattttccaagtttaacgtcaacgcccagcactaaacaccgagtgtgttcgactaaattgacaaaaacaactctattccaatgtgtatacaaactgaaggataatcttcattaccgtgggataggtattttttaactttacgggacttatttttttgaatcacaataattctgctcactcgtgtgtctgtcggactttcgaatctttatccgtgcgttaccatcttttcacatggtcacga
gi|10 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttctgggcactcaactttacttgtttttcccggatgtacagactgctgctggaatgggcaatttgttttggcaatgttcacaaactgcactactgtatgaacagcaactatactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccTTTTCTGAAATCAACAAC-AATAAATTT-C-TCATACAAAAATTCGTAGAATTTAACTGTCGGACCTAATGAATCTTTAGCCACAGTGCAGTTACcatcttttcacatggtcacga
gi|11 : taG-CTATAGTTTTTTGTAATCAACAAT-AA----TCT-CTTCACA-------TCGT-GTGTT---CTGTCGG--ATTTTGAATC-TTAGCC---GTGC-GTTACcggaaacctt
gi|12 : TTTTAACAAACAATCAATCAATC--C-TCAGC-------TTTC-GTGTT---TCGTCCT--CTTTTGAGT-TTTGACC---GTGT-GTTACcgggtcttttcaccatggtcacggt
gi|13 : tacACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACttttcataacactcgcaatagcccac
gi|14 : ATC--AGCA-TT-CCCTGGCCCTAGTACGT-ATT-----TTAT-TTCAATT-CTTAAATGAAAACAAG-AAA----AATAGA-CATTT-ATcgaatcttttcaccatggtcacg
gi|15 : TTCAATGCGATATA-TAGACTGAA-GGAT-AAT-GCCTTCATT-CCGT-GGGATA
gi|16 : atgtgaagtaattttaaacgaA-ACTACTTAAAATCCTTTCACCCAG-CGT-TAC-TTCTGTCAATTTTTGATC--AGCA-TT-CCC----CCTAGTC
gi|17 : -AAAATAATTTCTATTCAAATGAGATATA-CAAACTCAA-GGAT-A-TTGCCTTCATT-CCAT-
gi|18 : TGTAATCAACGAT-AAT---TCT-C-TCACA-------TCTT-GTGTTC--CTGTC
gi|2 : GGCAC--AA--T-ACTTGTTTTTCCCGGATT-G-T---C-AGACCTGC-GCTTG-AA-TGAGCAAGTTTGTTTTGGCAA--TTCACAATATG------CACG-ACGATGTAATGAACCTGCAAGC-TATa
gi|2 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaGGGCCTGCCCC-C---CCCA-CCACTCGGGGTG---GGGTGTTCTGGCGTTGTG-AGTC-ACAGT-----------TATGAT------G-ATTA--CTA--GGCT-----GGCATCTTT-----ATGCA-GATGTTT------GCAA-TTTAAGAAGAAGTAAA---AATATTC---ATC-TA-G-AATCTGTGT-TCA-TATCGTTACAGACCA-TCGAAATCCTTTCACCCA--CGTGTACAG----CCAATTTTGGACCGAGGCA-TT---C----CCTAGT-CAT-ATT-----TTAT-TTTTAAT-TCTA---GAGAACAAG-AAACT--GAT-GA-CATTT-A-TTCTTCATTAAGTACTAA--CA-AA-CAACCCCCCCCCCCCCCCCAAGTAGAGAAGC--TTTATGCGCCTTTTTCCACAGTTTAACGTACAACTGCACGGTACTAAACA-TGAAT-T-TTTGACTAATAAATG-C-AAAAactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccgggcctgccccccccaccactcggggtggggtgttctggcgttgtgagtcacagttatgatgattactaggctggcatctttatgcagatgtttgcaatttaagaagaagtaaaaatattcatctagaatctgtgttcatatcgttacagaccatcgaaatcctttcacccacgtgtacagccaattttggaccgaggcattccctagtcatattttatttttaattctagagaacaagaaactgatgacatttattcttcattaagtactaacaaacaaccccccccccccccccaagtagagaagctttatgcgcctttttccacagtttaacgtacaactgcacggtactaaacatgaatttttgactaataaatgcaaaa
gi|3 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaggcacaatacttgtttttcccggattgtcagacctgcgcttgaatgagcaagtttgttttggcaattcacaatatgcacgacgatgtaatgaacctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccTAGGCACT-AAA-TTACTTGTTATCCCAG--TT-GAT---AGAGACCTGCTGT-TG-AAATGGGCAA-TTTGTTTTGGCAA-GTTTACAAAATG------CACT-AC-ATGT-ATGAA-CAGCAT-C-TGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCCCCCC---CCCCTCCCCCCGGGGTGGTGGGGTA-TCTGACG-TG-G-GGTT-A-AG------------TATGGT------G-ATTT--ATA-CGGCT-----GGCATCCTT--T-AATG-A-TATGTTTTG--GGGCAA-TTT-AGA--AAGT-AA---AATATTAA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TAAATTTTTGATC--ATCA-TT-CCC----CCTAGTTCGT-ATT-----TTAT-TTCAATT-TCTAAATGAAAACAAG-AAA----AATATA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTGTTTCCCCAAGTA-AGATGCT-TTTATGCTACTTTTTCCA-AGTTTAACGT-CAAC-GCAGGATACTAAACA-CGAGTGT-TTTGAC-AATAAATG-C-AAAACAATTCCTATTTCAATGTGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACGGG-CTATATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC----TGC-GTTAC
gi|4 : aTTTTCCCTG--TTCGAT---C-AGACCTTCTGC-TG--A-TGGG--A-TTTGTTTT-GCAG-CTTCACAATATGGCAACATACTGAT-ATGA-ATGAACCGGCAA-CATAT
gi|4 : tgtGAGCCTGCCCC-C---ACC-TCCACC--GGGCGTTTGGGTA-TC-GACG-TG-G-AGTT-A-GA------------AGTTGT------GCATTTTAATG-TGCGT-----GGC-TCTTT--TGAATG-AGTATGTTTTTTTGGGCAAATTT-AGA--AAGT-AA---AATATTCA--ATTCCATG-AATTTGatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccggagcctgcccccacctccaccgggcgtttgggtatcgacgtggagttagaagttgtgcattttaatgtgcgtggctcttttgaatgagtatgtttttttgggcaaatttagaaagtaaaatattcaattccatgaatttgat
gi|5 : tgtttttccctgttcgatcagaccttctgctgatgggatttgttttgcagcttcacaatatggcaacatactgatatgaatgaaccggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccg-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-A----TCAATTTTTGACC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-C---G--------AAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAT------TTTTTCCCCCAAGTA-AGATGCT-TTTATGTGACTTTTTCCA-AGTTTAACAT-CAAC-GCACGGTACTAAACA-CGAGTGT-TT-GACTAATAAATG-C-AAAACAATTCCCAATTCAATGTGATAT-ACAGACT-AGAGGATAA-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACAGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACAAT-----TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACat
gi|6 : TTTCACCCAG-CGT-TAC-T----TCAATTTTTGACC--AGCA-TTACCC----CCTAGGTCGT-ACT-----TTGT-TTCAATT-TCTAGACGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTAAT--ATTACTAAT-CAGATTCCA------CCCCCCCCTCCAGTA-AGATGCC-TTT--GCGACTTTTTCCA-AGTTTAATGT-CAAC-ACGCGGTACTAAACA-CGAGTGT-TT-GAATAATAAATG-C-AAAACAATACCTATTTCAATGTCATATA-CAGACTGAAAG-AT-AAT-GCCTTTATT-CCGT-GGGATAT-----ATATATT-TTTAATTCAC-----T-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---TTGTCGG--CTTTTGAATCTTTAGTC---GTGC-GTTACcgaatcttttcaccatggtcacgatgg
gi|7 : TTCGATGCGATGTA-CAGACT-AAGGAAC-A-----ATTCAAT-TTGTAGGGTTAGTACATGCATGTG-TAAAACGTATGGG-CT-TACTTGTTT-TAATTAACGCT-AAA---TC--C-TCATC-------TCGT-CTGCT---CCGATAG--CCTTTGAATTTGTAGTC---GTG
gi|8 : agCACTTAG-TGT-TAC-T----TTAGATTTTGATC--AACA-TT-CCC----CCTCGTCCTT-TTTGGGGCTGAT-TTCA------TAGATGAAA--AAC-AAATGCCAGTAGG-CATCT-ATTTCTTATT--ATTGCTAAT-CAGAA-tactgcttaaatcgagtgagtacttgtatcttgtcaccatggtctacagtgaaacag
gi|9 : TATTTTCTTTAATTTATGGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-ACACA-------TTGA-GTGTT---CTGTCGG--CTTTTGAAt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 3333333333333 1 1111 1 11 222222 1 11 1 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 11 11111 1 1 1 1 111 666666666666 222222 1 11 11 22222 2222 111 2222 1 1 11 1 111 111 1 1 1 1 222222 1111 11111 2222 222222222 11 1 22 222 22222 1 111 1111111 111
lowQualScore : 444444 7 0 2222222222222 2 3 0 4444 2 0 2 88 1 888888 0 33 0 999 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 777 22 55 22222 0 3 2 0 0 0 111 111111111111 888888 0 33 66 55555 3 7777 111 0000 0 0 33 0 777 777 0 3 0 7 3 3 8 5 5 111111 66 5 5 0000 3 5 44444 5 9999999 1 5 0000 5 5 99 3 6 6 555555555 8 11 0 8 8 8 8 8 6 0 0 8 6 3 2 44 7 7 5 222 5 5 00000 6 1 1 5 1 0 3 222 3 3 6666666 3 000 99 777 5
lowQualScore : ...... . . ............. . . . .... . . . .. . ...... . .. . ... . . ............................................................................................................................................ . ... .. .. ..... . . . . . . ... ............ ...... . .. .. ..... . .... ... .... . . .. . ... ... . . . . . . . . . ...... .. . . .... . . ..... . ....... . . .... . . .. . . . ......... . .. . . . . . . . . . . . . . .. . . . ... . . ..... . . . . . . . ... . . ....... . ... .. ... .
lowQualScore : 333333 3 2 0000000000000 5 2 0 2222 5 0 5 88 0 888888 0 22 0 222 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555 00 00 88888 0 2 5 0 0 0 000 222222222222 888888 0 88 55 00000 2 0000 000 0000 0 0 88 0 555 000 0 2 0 3 3 3 0 7 7 777777 99 0 0 6666 4 7 33333 7 9999999 4 7 0000 7 7 22 2 7 7 222222222 0 88 8 0 0 0 0 0 4 8 8 0 7 2 7 00 9 1 7 111 7 7 00000 7 0 0 7 4 8 6 777 6 6 8888888 6 000 55 888 0
consensus : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
Reference ( family-198 ) : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCGGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
gi|1 : TGGGCACTCAACTTTACTTGTTTTTCCCG-----GATGTAC-AGAC-TGCTGC-TGGAA-TGGGCAA-TTTGTTTTGGCAATGTTCACAAACTG------CACT-AC--TGT-ATGAA-CAGCAA-C-TAT
gi|1 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttcGGGCCTCTCCC-CACCCCCCTCCACCCCGGG-GGTCGGGTG-TCTGA-G-TG-GGAGTTTA-AGATAGTATTGGGATGTGGTACTAACG-ATTT--ATATCGGCTCTTTCGGCATTTTTCTT-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AATTTTCTCTTCAAGATT-CATGAAATCTGTTTACCATTA-CGTTACA-ACTACTCGAAATCCTTTCACCCAGACGT-TACAT----TCAATTTTTGATC--AGCATTT-CCC----TCTAGTCCTTCATG-----TTATCTTCTATTATCGCTATGAAAACAAGAAAA----AATAGACCATTTAATTTCTTCAT--A-TACTAATCCAGAA-CAA------TT-TTTGCCCAAGTG-AGATGCTATTTATGCGA--TTTTCCA-AGTTTAACGT-CAAC-GCCCAGCACTAAACACCGAGTGTGTTCGACTA--AATTGACAAAAACAACT-CTATTCCAATGTG-TAT-ACAAACTG-AAGGAT-A---ATCTTCATTACCGT-GGGATAG-----GTATTTT-TTAACTTTACGGGACT-TATTTTTTTG-AATC-ACAAT-AAT---TCTGC-TCAC--------TCGT-GTG-T---CTGTCGGA-CTTTCGAATCTTTATCC---GTGC-GTTACactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccgggcctctccccacccccctccaccccgggggtcgggtgtctgagtgggagtttaagatagtattgggatgtggtactaacgatttatatcggctctttcggcatttttcttaatgatatgtttttgggcaatttagaaagtaattttctcttcaagattcatgaaatctgtttaccattacgttacaactactcgaaatcctttcacccagacgttacattcaatttttgatcagcatttccctctagtccttcatgttatcttctattatcgctatgaaaacaagaaaaaatagaccatttaatttcttcatatactaatccagaacaatttttgcccaagtgagatgctatttatgcgattttccaagtttaacgtcaacgcccagcactaaacaccgagtgtgttcgactaaattgacaaaaacaactctattccaatgtgtatacaaactgaaggataatcttcattaccgtgggataggtattttttaactttacgggacttatttttttgaatcacaataattctgctcactcgtgtgtctgtcggactttcgaatctttatccgtgcgttaccatcttttcacatggtcacga
gi|10 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttctgggcactcaactttacttgtttttcccggatgtacagactgctgctggaatgggcaatttgttttggcaatgttcacaaactgcactactgtatgaacagcaactatactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccTTTTCTGAAATCAACAAC-AATAAATTT-C-TCATACAAAAATTCGTAGAATTTAACTGTCGGACCTAATGAATCTTTAGCCACAGTGCAGTTACcatcttttcacatggtcacga
gi|11 : taG-CTATAGTTTTTTGTAATCAACAAT-AA----TCT-CTTCACA-------TCGT-GTGTT---CTGTCGG--ATTTTGAATC-TTAGCC---GTGC-GTTACcggaaacctt
gi|12 : TTTTAACAAACAATCAATCAATC--C-TCAGC-------TTTC-GTGTT---TCGTCCT--CTTTTGAGT-TTTGACC---GTGT-GTTACcgggtcttttcaccatggtcacggt
gi|13 : tacACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACttttcataacactcgcaatagcccac
gi|14 : ATC--AGCA-TT-CCCTGGCCCTAGTACGT-ATT-----TTAT-TTCAATT-CTTAAATGAAAACAAG-AAA----AATAGA-CATTT-ATcgaatcttttcaccatggtcacg
gi|15 : TTCAATGCGATATA-TAGACTGAA-GGAT-AAT-GCCTTCATT-CCGT-GGGATA
gi|16 : atgtgaagtaattttaaacgaA-ACTACTTAAAATCCTTTCACCCAG-CGT-TAC-TTCTGTCAATTTTTGATC--AGCA-TT-CCC----CCTAGTC
gi|17 : -AAAATAATTTCTATTCAAATGAGATATA-CAAACTCAA-GGAT-A-TTGCCTTCATT-CCAT-
gi|18 : TGTAATCAACGAT-AAT---TCT-C-TCACA-------TCTT-GTGTTC--CTGTC
gi|2 : GGCAC--AA--T-ACTTGTTTTTCCCGGATT-G-T---C-AGACCTGC-GCTTG-AA-TGAGCAAGTTTGTTTTGGCAA--TTCACAATATG------CACG-ACGATGTAATGAACCTGCAAGC-TATa
gi|2 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaGGGCCTGCCCC-C---CCCA-CCACTCGGGGTG---GGGTGTTCTGGCGTTGTG-AGTC-ACAGT-----------TATGAT------G-ATTA--CTA--GGCT-----GGCATCTTT-----ATGCA-GATGTTT------GCAA-TTTAAGAAGAAGTAAA---AATATTC---ATC-TA-G-AATCTGTGT-TCA-TATCGTTACAGACCA-TCGAAATCCTTTCACCCA--CGTGTACAG----CCAATTTTGGACCGAGGCA-TT---C----CCTAGT-CAT-ATT-----TTAT-TTTTAAT-TCTA---GAGAACAAG-AAACT--GAT-GA-CATTT-A-TTCTTCATTAAGTACTAA--CA-AA-CAACCCCCCCCCCCCCCCCAAGTAGAGAAGC--TTTATGCGCCTTTTTCCACAGTTTAACGTACAACTGCACGGTACTAAACA-TGAAT-T-TTTGACTAATAAATG-C-AAAAactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccgggcctgccccccccaccactcggggtggggtgttctggcgttgtgagtcacagttatgatgattactaggctggcatctttatgcagatgtttgcaatttaagaagaagtaaaaatattcatctagaatctgtgttcatatcgttacagaccatcgaaatcctttcacccacgtgtacagccaattttggaccgaggcattccctagtcatattttatttttaattctagagaacaagaaactgatgacatttattcttcattaagtactaacaaacaaccccccccccccccccaagtagagaagctttatgcgcctttttccacagtttaacgtacaactgcacggtactaaacatgaatttttgactaataaatgcaaaa
gi|3 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaggcacaatacttgtttttcccggattgtcagacctgcgcttgaatgagcaagtttgttttggcaattcacaatatgcacgacgatgtaatgaacctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccTAGGCACT-AAA-TTACTTGTTATCCCAG--TT-GAT---AGAGACCTGCTGT-TG-AAATGGGCAA-TTTGTTTTGGCAA-GTTTACAAAATG------CACT-AC-ATGT-ATGAAC-AGCAT-C-TGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCCCCCC---CCCCTCCCCCCGGGGTGGTGGGGTA-TCTGACG-TG-G-GGTT-A-AG------------TATGGT------G-ATTT--ATA-CGGCT-----GGCATCCTT--T-AATG-A-TATGTTTTG--GGGCAA-TTT-AGA--AAGT-AA---AATATTAA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TAAATTTTTGATC--ATCA-TT-CCC----CCTAGTTCGT-ATT-----TTAT-TTCAATT-TCTAAATGAAAACAAG-AAA----AATATA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTGTTTCCCCAAGTA-AGATGCT-TTTATGCTACTTTTTCCA-AGTTTAACGT-CAAC-GCAGGATACTAAACA-CGAGTGT-TTTGAC-AATAAATG-C-AAAACAATTCCTATTTCAATGTGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACGGG-CTATATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC----TGC-GTTAC
gi|4 : aTTTTCCCTG--TTCGAT---C-AGACCTTCTGC-TG--A-TGGG--A-TTTGTTTT-GCAG-CTTCACAATATGGCAACATACTGAT-ATGA-ATGAACCGGCAA-CATAT
gi|4 : tgtGAGCCTGCCCC-C---ACC-TCCACC--GGGCGTTTGGGTA-TC-GACG-TG-G-AGTT-A-GA------------AGTTGT------GCATTTTAATG-TGCGT-----GGC-TCTTT--TGAATG-AGTATGTTTTTTTGGGCAAATTT-AGA--AAGT-AA---AATATTCA--ATTCCATG-AATTTGatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccggagcctgcccccacctccaccgggcgtttgggtatcgacgtggagttagaagttgtgcattttaatgtgcgtggctcttttgaatgagtatgtttttttgggcaaatttagaaagtaaaatattcaattccatgaatttgat
gi|5 : tgtttttccctgttcgatcagaccttctgctgatgggatttgttttgcagcttcacaatatggcaacatactgatatgaatgaaccggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccg-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-A----TCAATTTTTGACC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-C---G--------AAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAT------TTTTTCCCCCAAGTA-AGATGCT-TTTATGTGACTTTTTCCA-AGTTTAACAT-CAAC-GCACGGTACTAAACA-CGAGTGT-TT-GACTAATAAATG-C-AAAACAATTCCCAATTCAATGTGATAT-ACAGACT-AGAGGATAA-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACAGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACAAT-----TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACat
gi|6 : TTTCACCCAG-CGT-TAC-T----TCAATTTTTGACC--AGCA-TTACCC----CCTAGGTCGT-ACT-----TTGT-TTCAATT-TCTAGACGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTAAT--ATTACTAAT-CAGATTCCA------CCCCCCCCTCCAGTA-AGATGCC-TTT--GCGACTTTTTCCA-AGTTTAATGT-CAAC-ACGCGGTACTAAACA-CGAGTGT-TT-GAATAATAAATG-C-AAAACAATACCTATTTCAATGTCATATA-CAGACTGAAAG-AT-AAT-GCCTTTATT-CCGT-GGGATAT-----ATATATT-TTTAATTCAC-----T-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---TTGTCGG--CTTTTGAATCTTTAGTC---GTGC-GTTACcgaatcttttcaccatggtcacgatgg
gi|7 : TTCGATGCGATGTA-CAGACT-AAGGAAC-A-----ATTCAAT-TTGTAGGGTTAGTACATGCATGTG-TAAAACGTATGGG-CT-TACTTGTTT-TAATTAACGCT-AAA---TC--C-TCATC-------TCGT-CTGCT---CCGATAG--CCTTTGAATTTGTAGTC---GTG
gi|8 : agCACTTAG-TGT-TAC-T----TTAGATTTTGATC--AACA-TT-CCC----CCTCGTCCTT-TTTGGGGCTGAT-TTCA------TAGATGAAA--AAC-AAATGCCAGTAGG-CATCT-ATTTCTTATT--ATTGCTAAT-CAGAA-tactgcttaaatcgagtgagtacttgtatcttgtcaccatggtctacagtgaaacag
gi|9 : TATTTTCTTTAATTTATGGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-ACACA-------TTGA-GTGTT---CTGTCGG--CTTTTGAAt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 3333333333333 1 1111 1 11 222222 1 11 1 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 11 11111 1 1 1 1 111 666666666666 222222 1 11 11 22222 2222 111 2222 1 1 11 1 111 111 1 1 1 1 222222 1111 11111 2222 222222222 11 1 22 222 22222 1 111 1111111 111
lowQualScore : 444444 7 0 2222222222222 2 3 0 4444 2 0 2 88 1 888888 0 33 0 666 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 777 22 55 22222 0 3 2 0 0 0 111 111111111111 888888 0 33 66 55555 3 7777 111 0000 0 0 33 0 777 777 0 3 0 7 3 3 8 5 5 111111 66 5 5 0000 3 5 44444 5 9999999 1 5 0000 5 5 99 3 6 6 555555555 8 11 0 8 8 8 8 8 6 0 0 8 6 3 2 44 7 7 5 222 5 5 00000 6 1 1 5 1 0 3 222 3 3 6666666 3 000 99 777 5
lowQualScore : ...... . . ............. . . . .... . . . .. . ...... . .. . ... . . ............................................................................................................................................ . ... .. .. ..... . . . . . . ... ............ ...... . .. .. ..... . .... ... .... . . .. . ... ... . . . . . . . . . ...... .. . . .... . . ..... . ....... . . .... . . .. . . . ......... . .. . . . . . . . . . . . . . .. . . . ... . . ..... . . . . . . . ... . . ....... . ... .. ... .
lowQualScore : 333333 3 2 0000000000000 5 2 0 2222 5 0 5 88 0 888888 0 22 0 222 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555 00 00 88888 0 2 5 0 0 0 000 222222222222 888888 0 88 55 00000 2 0000 000 0000 0 0 88 0 555 000 0 2 0 3 3 3 0 7 7 777777 99 0 0 6666 4 7 33333 7 9999999 4 7 0000 7 7 22 2 7 7 222222222 0 88 8 0 0 0 0 0 4 8 8 0 7 2 7 00 9 1 7 111 7 7 00000 7 0 0 7 4 8 6 777 6 6 8888888 6 000 55 888 0
consensus : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
Reference ( family-198 ) : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
gi|1 : TGGGCACTCAACTTTACTTGTTTTTCCCG-----GATGTAC-AGAC-TGCTGC-TGGAA-TGGGCAA-TTTGTTTTGGCAATGTTCACAAACTG------CACT-AC--TGT-ATGAA-CAGCAA-C-TAT
gi|1 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttcGGGCCTCTCCC-CACCCCCCTCCACCCCGGG-GGTCGGGTG-TCTGA-G-TG-GGAGTTTA-AGATAGTATTGGGATGTGGTACTAACG-ATTT--ATATCGGCTCTTTCGGCATTTTTCTT-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AATTTTCTCTTCAAGATT-CATGAAATCTGTTTACCATTA-CGTTACA-ACTACTCGAAATCCTTTCACCCAGACGT-TACAT----TCAATTTTTGATC--AGCATTT-CCC----TCTAGTCCTTCATG-----TTATCTTCTATTATCGCTATGAAAACAAGAAAA----AATAGACCATTTAATTTCTTCAT--A-TACTAATCCAGAA-CAA------TT-TTTGCCCAAGTG-AGATGCTATTTATGCGA--TTTTCCA-AGTTTAACGT-CAAC-GCCCAGCACTAAACACCGAGTGTGTTCGACTA--AATTGACAAAAACAACT-CTATTCCAATGTG-TAT-ACAAACTG-AAGGAT-A---ATCTTCATTACCGT-GGGATAG-----GTATTTT-TTAACTTTACGGGACT-TATTTTTTTG-AATC-ACAAT-AAT---TCTGC-TCAC--------TCGT-GTG-T---CTGTCGGA-CTTTCGAATCTTTATCC---GTGC-GTTACactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccgggcctctccccacccccctccaccccgggggtcgggtgtctgagtgggagtttaagatagtattgggatgtggtactaacgatttatatcggctctttcggcatttttcttaatgatatgtttttgggcaatttagaaagtaattttctcttcaagattcatgaaatctgtttaccattacgttacaactactcgaaatcctttcacccagacgttacattcaatttttgatcagcatttccctctagtccttcatgttatcttctattatcgctatgaaaacaagaaaaaatagaccatttaatttcttcatatactaatccagaacaatttttgcccaagtgagatgctatttatgcgattttccaagtttaacgtcaacgcccagcactaaacaccgagtgtgttcgactaaattgacaaaaacaactctattccaatgtgtatacaaactgaaggataatcttcattaccgtgggataggtattttttaactttacgggacttatttttttgaatcacaataattctgctcactcgtgtgtctgtcggactttcgaatctttatccgtgcgttaccatcttttcacatggtcacga
gi|10 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttctgggcactcaactttacttgtttttcccggatgtacagactgctgctggaatgggcaatttgttttggcaatgttcacaaactgcactactgtatgaacagcaactatactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccTTTTCTGAAATCAACAAC-AATAAATTT-C-TCATACAAAAATTCGTAGAATTTAACTGTCGGACCTAATGAATCTTTAGCCACAGTGCAGTTACcatcttttcacatggtcacga
gi|11 : taG-CTATAGTTTTTTGTAATCAACAAT-AA----TCT-CTTCACA-------TCGT-GTGTT---CTGTCGG--ATTTTGAATC-TTAGCC---GTGC-GTTACcggaaacctt
gi|12 : TTTTAACAAACAATCAATCAATC--C-TCAGC-------TTTC-GTGTT---TCGTCCT--CTTTTGAGT-TTTGACC---GTGT-GTTACcgggtcttttcaccatggtcacggt
gi|13 : tacACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACttttcataacactcgcaatagcccac
gi|14 : ATC--AGCA-TT-CCCTGGCCCTAGTACGT-ATT-----TTAT-TTCAATT-CTTAAATGAAAACAAG-AAA----AATAGA-CATTT-ATcgaatcttttcaccatggtcacg
gi|15 : TTCAATGCGATATA-TAGACTGAA-GGAT-AAT-GCCTTCATT-CCGT-GGGATA
gi|16 : atgtgaagtaattttaaacgaA-ACTACTTAAAATCCTTTCACCCAG-CGT-TAC-TTCTGTCAATTTTTGATC--AGCA-TT-CCC----CCTAGTC
gi|17 : -AAAATAATTTCTATTCAAATGAGATATA-CAAACTCAA-GGAT-A-TTGCCTTCATT-CCAT-
gi|18 : TGTAATCAACGAT-AAT---TCT-C-TCACA-------TCTT-GTGTTC--CTGTC
gi|2 : GGCAC--AA--T-ACTTGTTTTTCCCGGATT-G-T---C-AGACCTGC-GCTTG-AA-TGAGCAAGTTTGTTTTGGCAA--TTCACAATATG------CACG-ACGATGTAATGAACCTGCAAGC-TATa
gi|2 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaGGGCCTGCCCC-C---CCCA-CCACTCGGGGTG---GGGTGTTCTGGCGTTGTG-AGTC-ACAGT-----------TATGAT------G-ATTA--CTA--GGCT-----GGCATCTTT-----ATGCA-GATGTTT------GCAA-TTTAAGAAGAAGTAAA---AATATTC---ATC-TA-G-AATCTGTGT-TCA-TATCGTTACAGACCA-TCGAAATCCTTTCACCCA--CGTGTACAG----CCAATTTTGGACCGAGGCA-TT---C----CCTAGT-CAT-ATT-----TTAT-TTTTAAT-TCTA---GAGAACAAG-AAACT--GAT-GA-CATTT-A-TTCTTCATTAAGTACTAA--CA-AA-CAACCCCCCCCCCCCCCCCAAGTAGAGAAGC--TTTATGCGCCTTTTTCCACAGTTTAACGTACAACTGCACGGTACTAAACA-TGAAT-T-TTTGACTAATAAATG-C-AAAAactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccgggcctgccccccccaccactcggggtggggtgttctggcgttgtgagtcacagttatgatgattactaggctggcatctttatgcagatgtttgcaatttaagaagaagtaaaaatattcatctagaatctgtgttcatatcgttacagaccatcgaaatcctttcacccacgtgtacagccaattttggaccgaggcattccctagtcatattttatttttaattctagagaacaagaaactgatgacatttattcttcattaagtactaacaaacaaccccccccccccccccaagtagagaagctttatgcgcctttttccacagtttaacgtacaactgcacggtactaaacatgaatttttgactaataaatgcaaaa
gi|3 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaggcacaatacttgtttttcccggattgtcagacctgcgcttgaatgagcaagtttgttttggcaattcacaatatgcacgacgatgtaatgaacctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccTAGGCACT-AAA-TTACTTGTTATCCCAG--TT-GAT---AGAGACCTGCTGT-TG-AAATGGGCAA-TTTGTTTTGGCAA-GTTTACAAAATG------CACT-AC-ATGT-ATGAAC-AGCAT-C-TGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCCCCCC---CCCCTCCCCCCGGGGTGGTGGGGTA-TCTGACG-TG-G-GGTT-A-AG------------TATGGT------G-ATTT--ATA-CGGCT-----GGCATCCTT--T-AATG-A-TATGTTTTG--GGGCAA-TTT-AGA--AAGT-AA---AATATTAA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TAAATTTTTGATC--ATCA-TT-CCC----CCTAGTTCGT-ATT-----TTAT-TTCAATT-TCTAAATGAAAACAAG-AAA----AATATA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTGTTTCCCCAAGTA-AGATGCT-TTTATGCTACTTTTTCCA-AGTTTAACGT-CAAC-GCAGGATACTAAACA-CGAGTGT-TTTGAC-AATAAATG-C-AAAACAATTCCTATTTCAATGTGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACGGG-CTATATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC----TGC-GTTAC
gi|4 : aTTTTCCCTG--TTCGAT---C-AGACCTTCTGC-TG--A-TGGG--A-TTTGTTTT-GCAG-CTTCACAATATGGCAACATACTGAT-ATGA-ATGAACCGGCAA-CATAT
gi|4 : tgtGAGCCTGCCCC-C---ACC-TCCACC--GGGCGTTTGGGTA-TC-GACG-TG-G-AGTT-A-GA------------AGTTGT------GCATTTTAATG-TGCGT-----GGC-TCTTT--TGAATG-AGTATGTTTTTTTGGGCAAATTT-AGA--AAGT-AA---AATATTCA--ATTCCATG-AATTTGatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccggagcctgcccccacctccaccgggcgtttgggtatcgacgtggagttagaagttgtgcattttaatgtgcgtggctcttttgaatgagtatgtttttttgggcaaatttagaaagtaaaatattcaattccatgaatttgat
gi|5 : tgtttttccctgttcgatcagaccttctgctgatgggatttgttttgcagcttcacaatatggcaacatactgatatgaatgaaccggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccg-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-A----TCAATTTTTGACC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-C---G--------AAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAT------TTTTTCCCCCAAGTA-AGATGCT-TTTATGTGACTTTTTCCA-AGTTTAACAT-CAAC-GCACGGTACTAAACA-CGAGTGT-TT-GACTAATAAATG-C-AAAACAATTCCCAATTCAATGTGATAT-ACAGACT-AGAGGATAA-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACAGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACAAT-----TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACat
gi|6 : TTTCACCCAG-CGT-TAC-T----TCAATTTTTGACC--AGCA-TTACCC----CCTAGGTCGT-ACT-----TTGT-TTCAATT-TCTAGACGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTAAT--ATTACTAAT-CAGATTCCA------CCCCCCCCTCCAGTA-AGATGCC-TTT--GCGACTTTTTCCA-AGTTTAATGT-CAAC-ACGCGGTACTAAACA-CGAGTGT-TT-GAATAATAAATG-C-AAAACAATACCTATTTCAATGTCATATA-CAGACTGAAAG-AT-AAT-GCCTTTATT-CCGT-GGGATAT-----ATATATT-TTTAATTCAC-----T-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---TTGTCGG--CTTTTGAATCTTTAGTC---GTGC-GTTACcgaatcttttcaccatggtcacgatgg
gi|7 : TTCGATGCGATGTA-CAGACT-AAGGAAC-A-----ATTCAAT-TTGTAGGGTTAGTACATGCATGTG-TAAAACGTATGGG-CT-TACTTGTTT-TAATTAACGCT-AAA---TC--C-TCATC-------TCGT-CTGCT---CCGATAG--CCTTTGAATTTGTAGTC---GTG
gi|8 : agCACTTAG-TGT-TAC-T----TTAGATTTTGATC--AACA-TT-CCC----CCTCGTCCTT-TTTGGGGCTGAT-TTCA------TAGATGAAA--AAC-AAATGCCAGTAGG-CATCT-ATTTCTTATT--ATTGCTAAT-CAGAA-tactgcttaaatcgagtgagtacttgtatcttgtcaccatggtctacagtgaaacag
gi|9 : TATTTTCTTTAATTTATGGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-ACACA-------TTGA-GTGTT---CTGTCGG--CTTTTGAAt
blockSeqs : TAAA T GATTGTC C T T AAA C G G G T GCAACA G GA A CCT G A C . CT CG TGGTG T T C T T . AC T . C TA C . A TG CA TTTT A A AG A . A C T . A . T G . G TTCTG GA . A TGGC A . GGGGC . CTTAAA A . TGCC . . TA G . T CCCCCCCCC G T C A T . . T . . T C AA G A A AT . A TACAT C A G . A C AAA . T CAAAAAT A TAA AC ACA A
blockSeqs : AA . TTGATAG C T . AA C . G C A . . A . CCG . . . . A CG CGTTT . T C . . . A . . . . T . A T AG TG . . . . . A . T . . . . . . . AG . . . . C . . . TCTAAA A . CT . . . T . . TTG . T . . . . . T . . C A A C A . TT . . . . A A . A . CAA . . AT . C . . .
blockSeqs : TTCGATC C . . A . . . . T . . A . CA . . . . T . TG . . C . . . A . . . . . . . . A . . . . . . . . . . . . . T . . . . T . . . TCTAGA A . . . . . T . . TTT . C . . . . . . . . C T A G A . AT . . . . T G . . . . . . . . . . . .
blockSeqs : . . . A . . . . C . . . TCTA A . . . . . T . . CCC . . . . . . . . . . C T A G G . T . . . . C G . . . . . . . . . . . .
blockSeqs : . . T . . . . T . . . TAGA . . . . . . T . . . T A . . . T . . . T . . . . . . . . . . . . .
blockSeqs : . . T . . . . C . . . CG . . . . . C A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : T***** TCTAGA* TTN****** T* T** **
originalCons : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
finalCons : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTG-TCTGACG-TG-G-AGTT-A-AG------------TGTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTT-AGA--AAGT-AA---AATATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TACT-----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATTTCTAGA-TGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAATTN------TTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-AT--GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 3333333333333 1 1111 1 11 222222 1 11 1 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 11 1 1 1 1 1 111 55555555555555 222222 1 11 11 22222 2222 111 2222 1 1 11 222222 111 1 1 1 1 222222 1111 11111 2222 222222 11 1 22 222 22222 1 111 1111111 111
lowQualScore : 444444 7 0 2222222222222 2 3 0 4444 2 0 2 88 1 888888 0 33 0 666 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 777 22 55 0 99 0 3 2 0 0 0 111 88888888888888 888888 0 33 66 55555 3 7777 111 0000 0 0 33 222222 777 0 3 0 7 3 3 8 5 5 111111 66 5 5 0000 3 5 44444 5 9999999 1 5 0000 5 5 99 3 6 6 333333 1 3 8 11 0 8 8 8 8 8 6 0 0 8 6 3 2 44 7 7 5 222 5 5 00000 6 1 1 5 1 0 3 222 3 3 6666666 3 000 99 777 5
lowQualScore : ...... . . ............. . . . .... . . . .. . ...... . .. . ... . . ............................................................................................................................................ . ... .. .. . .. . . . . . . ... .............. ...... . .. .. ..... . .... ... .... . . .. ...... ... . . . . . . . . . ...... .. . . .... . . ..... . ....... . . .... . . .. . . . ...... . . . .. . . . . . . . . . . . . . .. . . . ... . . ..... . . . . . . . ... . . ....... . ... .. ... .
lowQualScore : 333333 3 2 0000000000000 5 2 0 2222 5 0 5 88 0 888888 0 22 0 222 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555 00 00 5 88 0 2 5 0 0 0 000 88888888888888 888888 0 88 55 00000 2 0000 000 0000 0 0 88 000000 000 0 2 0 3 3 3 0 7 7 777777 99 0 0 6666 4 7 33333 7 9999999 4 7 0000 7 7 22 2 7 7 000000 0 2 0 88 8 0 0 0 0 0 4 8 8 0 7 2 7 00 9 1 7 111 7 7 00000 7 0 0 7 4 8 6 777 6 6 8888888 6 000 55 888 0
consensus : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTGT-CTGACGT-G-G-AGTT-A-AG------------T-GTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAA---AA-TATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTCTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
Reference ( family-198 ) : NTGGGCACT-AA--TTACTTGTTTTCCCCG--TT-GAT---C-AGACCTGCTGC-TG-AA-TGGGCAA-TTTGTTTTGGCAA-GTTCACAANATG------CACT-AC-ATGT-ATGAACCAGCAA-C-TATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGCCCC-C---CCCCTCCACCCGGGGCGGTCGGGTGT-CTGACGT-G-G-AGTT-A-AG------------T-GTGGT------G-ATTT--ATA-CGGCT-----GGCATCTTT--T-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAA---AA-TATTCA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TCAATTTTTGATC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-TCTAGATGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTNTTCCCCCAAGTA-AGATGCT-TTTATGCGACTTTTTCCA-AGTTTAACGT-CAAC-GCACGGTACTAAACA-CGAGTGT-TTCGACTAATAAATG-C-AAAACAATTCCTATTTCAATGCGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAANTTACGGG-CT-TATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTAC
gi|1 : TGGGCACTCAACTTTACTTGTTTTTCCCG-----GATGTAC-AGAC-TGCTGC-TGGAA-TGGGCAA-TTTGTTTTGGCAATGTTCACAAACTG------CACT-AC--TGT-ATGAA-CAGCAA-C-TAT
gi|1 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttcGGGCCTCTCCC-CACCCCCCTCCACCCCGGG-GGTCGGGTGT-CTGA-GT-G-GGAGTTTA-AGATAGTATTGGGAT-GTGGTACTAACG-ATTT--ATATCGGCTCTTTCGGCATTTTTCTT-AATG-A-TATGTTTTT--GGGCAA-TTTA-GAA--AGTAATTTTC-TCTTCAAGATT-CATGAAATCTGTTTACCATTA-CGTTACA-ACTACTCGAAATCCTTTCACCCAGACGT-TACAT----TCAATTTTTGATC--AGCATTT-CCC----TCTAGTCCTTCATG-----TTATCTTCTATTATCGCTATGAAAACAAGAAAA----AATAGACCATTTAATTTCTTCAT--A-TACTAATCCAGAA-CAA------TTTTT-GCCCAAGTG-AGATGCTATTTATGCGA--TTTTCCA-AGTTTAACGT-CAAC-GCCCAGCACTAAACACCGAGTGTGTTCGACTA--AATTGACAAAAACAACT-CTATTCCAATGTG-TAT-ACAAACTG-AAGGAT-A---ATCTTCATTACCGT-GGGATAG-----GTATTTT-TTAACTTTACGGGACT-TATTTTTTTG-AATC-ACAAT-AAT---TCTGC-TCAC--------TCGT-GTG-T---CTGTCGGA-CTTTCGAATCTTTATCC---GTGC-GTTACactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccgggcctctccccacccccctccaccccgggggtcgggtgtctgagtgggagtttaagatagtattgggatgtggtactaacgatttatatcggctctttcggcatttttcttaatgatatgtttttgggcaatttagaaagtaattttctcttcaagattcatgaaatctgtttaccattacgttacaactactcgaaatcctttcacccagacgttacattcaatttttgatcagcatttccctctagtccttcatgttatcttctattatcgctatgaaaacaagaaaaaatagaccatttaatttcttcatatactaatccagaacaatttttgcccaagtgagatgctatttatgcgattttccaagtttaacgtcaacgcccagcactaaacaccgagtgtgttcgactaaattgacaaaaacaactctattccaatgtgtatacaaactgaaggataatcttcattaccgtgggataggtattttttaactttacgggacttatttttttgaatcacaataattctgctcactcgtgtgtctgtcggactttcgaatctttatccgtgcgttaccatcttttcacatggtcacga
gi|10 : ttctatacgttaaatatttgaaaatcataagtatgacaatttaagatgatcatttattgctttcaaaattacctatgatgttcaagattacaaattttttaaaatttgtgatcaagcttttttagtaccgttaaaaatggactgtacataagatgatttccggcagctcaggccatcaaacagtcatagatacatacgcgtatatatatttcacctcgtgctccgtgagcactttaacaaaatataatctttggttttcaacattcaaaaaaagttgcatgtatatttcctattttgtccaaaaattgatgaagcgagtccttgtcttatacaaatagacagctttcaaatatctttcgataaatgcttcctatgaaactaatgcccaaatccgagaaaggaaatgggtcaggttaatccattcctcggagaaggtacggggggtgctttgcacctatcttggcagtgattttggtatcttctttctgggcactcaactttacttgtttttcccggatgtacagactgctgctggaatgggcaatttgttttggcaatgttcacaaactgcactactgtatgaacagcaactatactgggagagcggaaggtcacaatctctataaaggtcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaaggaagtgacccttctaaccccTTTTCTGAAATCAACAAC-AATAAATTT-C-TCATACAAAAATTCGTAGAATTTAACTGTCGGACCTAATGAATCTTTAGCCACAGTGCAGTTACcatcttttcacatggtcacga
gi|11 : taG-CTATAGTTTTTTGTAATCAACAAT-AA----TCT-CTTCACA-------TCGT-GTGTT---CTGTCGG--ATTTTGAATC-TTAGCC---GTGC-GTTACcggaaacctt
gi|12 : TTTTAACAAACAATCAATCAATC--C-TCAGC-------TTTC-GTGTT---TCGTCCT--CTTTTGAGT-TTTGACC---GTGT-GTTACcgggtcttttcaccatggtcacggt
gi|13 : tacACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACttttcataacactcgcaatagcccac
gi|14 : ATC--AGCA-TT-CCCTGGCCCTAGTACGT-ATT-----TTAT-TTCAATT-CTTAAATGAAAACAAG-AAA----AATAGA-CATTT-ATcgaatcttttcaccatggtcacg
gi|15 : TTCAATGCGATATA-TAGACTGAA-GGAT-AAT-GCCTTCATT-CCGT-GGGATA
gi|16 : atgtgaagtaattttaaacgaA-ACTACTTAAAATCCTTTCACCCAG-CGT-TAC-TTCTGTCAATTTTTGATC--AGCA-TT-CCC----CCTAGTC
gi|17 : -AAAATAATTTCTATTCAAATGAGATATA-CAAACTCAA-GGAT-A-TTGCCTTCATT-CCAT-
gi|18 : TGTAATCAACGAT-AAT---TCT-C-TCACA-------TCTT-GTGTTC--CTGTC
gi|2 : GGCAC--AA--T-ACTTGTTTTTCCCGGATT-G-T---C-AGACCTGC-GCTTG-AA-TGAGCAAGTTTGTTTTGGCAA--TTCACAATATG------CACG-ACGATGTAATGAACCTGCAAGC-TATa
gi|2 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaGGGCCTGCCCC-C---CCCA-CCACTCGGGGTGG---GGTGTTCTGGCGTTGTG-AGTC-ACAG------------TTATGAT------G-ATTA--CTA--GGCT-----GGCATCTTT-----ATGCA-GATGTTT------GCAA-TTTAAGAAGAAGTAA---AAATATTCA---TC-TA-G-AATCTGTGT-TCA-TATCGTTACAGACCA-TCGAAATCCTTTCACCCA--CGTGTACAG----CCAATTTTGGACCGAGGCA-TT---C----CCTAGT-CAT-ATT-----TTAT-TTTTAAT-TCTA---GAGAACAAG-AAACT--GAT-GA-CATTT-A-TTCTTCATTAAGTACTAA--CA-AA-CAACCCCCCCCCCCCCCCCAAGTAGAGAAGC--TTTATGCGCCTTTTTCCACAGTTTAACGTACAACTGCACGGTACTAAACA-TGAAT-T-TTTGACTAATAAATG-C-AAAAactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccgggcctgccccccccaccactcggggtggggtgttctggcgttgtgagtcacagttatgatgattactaggctggcatctttatgcagatgtttgcaatttaagaagaagtaaaaatattcatctagaatctgtgttcatatcgttacagaccatcgaaatcctttcacccacgtgtacagccaattttggaccgaggcattccctagtcatattttatttttaattctagagaacaagaaactgatgacatttattcttcattaagtactaacaaacaaccccccccccccccccaagtagagaagctttatgcgcctttttccacagtttaacgtacaactgcacggtactaaacatgaatttttgactaataaatgcaaaa
gi|3 : tgatgctgtgttgactgttcataattatatgtttaaagttacagatttgtttaaatttgatcagccttttatttacagtcaaatgtacttctgtatatacgatatttgtggggttaagaagttactggtatagtcgtatgctctaccatcatgaaatccaaattttggtctttcaaacacttcaaataagtttatattcgctgattttgtcctaaaaatcggttatatcagtcctctgtaacatctgtagacatttttaagactgtcatggtgataatccagtcattcatatggaaaaagttcctgaaaaccaagaaatggcaatgttatccattctcgtgtagacgggagggtggggggggggggccttccttattctggctgattcttgcatttcttttgtataaatataaggcacaatacttgtttttcccggattgtcagacctgcgcttgaatgagcaagtttgttttggcaattcacaatatgcacgacgatgtaatgaacctgcaagctatactgaacatcacaattcatgaaattgggtcagaatacttcaacagattttttctttaagttatattaataggggtgcacagtgggtgaagatttagggcgcgcgtctgtgtacctaaaagtttaggtagtctaccaatccTAGGCACT-AAA-TTACTTGTTATCCCAG--TT-GAT---AGAGACCTGCTGT-TG-AAATGGGCAA-TTTGTTTTGGCAA-GTTTACAAAATG------CACT-AC-ATGT-ATGAAC-AGCAT-C-TGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCCCCCC---CCCCTCCCCCCGGGGTGGTGGGGTAT-CTGACGT-G-G-GGTT-A-AG------------T-ATGGT------G-ATTT--ATA-CGGCT-----GGCATCCTT--T-AATG-A-TATGTTTTG--GGGCAA-TTTA-GAA--AGTAA---AA-TATTAA--ATT-CATG-AATCTGTTTACCA-TA-CGTTACA-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-T----TAAATTTTTGATC--ATCA-TT-CCC----CCTAGTTCGT-ATT-----TTAT-TTCAATT-TCTAAATGAAAACAAG-AAA----AATATA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAA------TTGTTTCCCCAAGTA-AGATGCT-TTTATGCTACTTTTTCCA-AGTTTAACGT-CAAC-GCAGGATACTAAACA-CGAGTGT-TTTGAC-AATAAATG-C-AAAACAATTCCTATTTCAATGTGATATAACAGACTGAAAGGAT-A-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACGGG-CTATATTTTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC----TGC-GTTAC
gi|4 : aTTTTCCCTG--TTCGAT---C-AGACCTTCTGC-TG--A-TGGG--A-TTTGTTTT-GCAG-CTTCACAATATGGCAACATACTGAT-ATGA-ATGAACCGGCAA-CATAT
gi|4 : tgtGAGCCTGCCCC-C---ACC-TCCACC--GGGCGTTTGGGTAT-C-GACGT-G-G-AGTT-A-GA------------A-GTTGT------GCATTTTAATG-TGCGT-----GGC-TCTTT--TGAATG-AGTATGTTTTTTTGGGCAAATTTA-GAA--AGTAA---AA-TATTCA--ATTCCATG-AATTTGatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccggagcctgcccccacctccaccgggcgtttgggtatcgacgtggagttagaagttgtgcattttaatgtgcgtggctcttttgaatgagtatgtttttttgggcaaatttagaaagtaaaatattcaattccatgaatttgat
gi|5 : tgtttttccctgttcgatcagaccttctgctgatgggatttgttttgcagcttcacaatatggcaacatactgatatgaatgaaccggcaacatatatccttgaacagtcacaattctttgataaattgggtcagacgaacttttaatcgaaaatatgaaatttaaatagaaatgttttttataagttttatcaatcaaaggagtgggaagtgaaaatttcaacgcggcggcactgtaccgaaagtttaggaacgtggaccccctactaactccg-ACTACTCGAAATCCTTTCACCCAG-CGT-TAC-A----TCAATTTTTGACC--AGCA-TT-CCC----CCTAGTCCGT-ATT-----TTAT-TTCAATT-C---G--------AAG-AAA----AATAGA-CATTT-ATTTCTTCAT--ATTACTAAT-CAGAA-CAT------TTTTTCCCCCAAGTA-AGATGCT-TTTATGTGACTTTTTCCA-AGTTTAACAT-CAAC-GCACGGTACTAAACA-CGAGTGT-TT-GACTAATAAATG-C-AAAACAATTCCCAATTCAATGTGATAT-ACAGACT-AGAGGATAA-T-GCCTTCATT-CCGT-GGGATAG-----GTATTTT-TTTAAATTACAGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACAAT-----TCGT-GTGTT---CTGTCGG--CTTTTGAATCTTTAGCC---GTGC-GTTACat
gi|6 : TTTCACCCAG-CGT-TAC-T----TCAATTTTTGACC--AGCA-TTACCC----CCTAGGTCGT-ACT-----TTGT-TTCAATT-TCTAGACGAAAACAAG-AAA----AATAGA-CATTT-ATTTCTTAAT--ATTACTAAT-CAGATTCCA------CCCCCCCCTCCAGTA-AGATGCC-TTT--GCGACTTTTTCCA-AGTTTAATGT-CAAC-ACGCGGTACTAAACA-CGAGTGT-TT-GAATAATAAATG-C-AAAACAATACCTATTTCAATGTCATATA-CAGACTGAAAG-AT-AAT-GCCTTTATT-CCGT-GGGATAT-----ATATATT-TTTAATTCAC-----T-TATATTTTTGTAATCAACAAT-AAT---TCT-C-TCACA-------TCGT-GTGTT---TTGTCGG--CTTTTGAATCTTTAGTC---GTGC-GTTACcgaatcttttcaccatggtcacgatgg
gi|7 : TTCGATGCGATGTA-CAGACT-AAGGAAC-A-----ATTCAAT-TTGTAGGGTTAGTACATGCATGTG-TAAAACGTATGGG-CT-TACTTGTTT-TAATTAACGCT-AAA---TC--C-TCATC-------TCGT-CTGCT---CCGATAG--CCTTTGAATTTGTAGTC---GTG
gi|8 : agCACTTAG-TGT-TAC-T----TTAGATTTTGATC--AACA-TT-CCC----CCTCGTCCTT-TTTGGGGCTGAT-TTCA------TAGATGAAA--AAC-AAATGCCAGTAGG-CATCT-ATTTCTTATT--ATTGCTAAT-CAGAA-tactgcttaaatcgagtgagtacttgtatcttgtcaccatggtctacagtgaaacag
gi|9 : TATTTTCTTTAATTTATGGG-CT-TATATTTTTGTAATCAACAAT-AAT---TCT-C-ACACA-------TTGA-GTGTT---CTGTCGG--CTTTTGAAt