lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 1 22 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5555555 111 111 33333 333333 2222 22222222222222222222 22222
lowQualScore : 5 6 11 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 1111111 333 2 66666 666 88888 0 111111 9 8888 5555 22222222222222222222 2 3 22222 4 55
lowQualScore : . . .. . ................................................................................................................................................................................................................................................................................................................ . ....... ... . ..... ... ..... . ...... . .... .... .................... . . ..... . ..
lowQualScore : 0 0 00 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7777777 333 8 33333 333 66666 7 999999 6 5555 0000 22222222222222222222 8 2 44444 0 55
consensus : TGTTAAATTCATGACCCCTGGGTTCAGGTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCAATATTTTA------------GAAAATCTTGACCCTTGGACATCAAAAGAGCAAACCGCTTG----ATTACCTATAACGAGCAATGAACCCTCTTTTAGATACAATGTACGTAAAAACTCGTTTGCCCATTTGGATTTAGATCT-GAAATAGGAAACCGCATTTCTATGTGATGNNATAAAACATAGCCACCTATCANCANANTTGTGGTAGAACCATAAACAGNTAGTTTATATAGACAACAGTTATACC-AGT-ATATNTCT--CATCTAGTACAAAGTATA-A----AATGGAGAAGTATA-AANA-GCACACGGGTAACACAAT--GATTTCTAAAG----AGT--AAAA------NA-CGCG-CACA--CTCAGGTGACTGTT---A-A-GGCCCAT--GGGCCTCTTGTTT
Reference ( gi|2 ) : TGTGAAATTTATGACGTCTGAGTTCTCATCA--TTGCAGCATTGATTATTTGTTGAAAATGC--TATTATATAATACCAAAAAGAAATTC----CCCATGAACCTTAATTAAGCAGACTGCCTGTTCGATTACATATGATGAGCAATG---TGTCTTT--------------G--------CATTTGCCTATT--GAT----ATCTTAAAATAGAAATTCCCATTTCGTTGTGGTGTCATAAAACTTGCTCA-----CAA-ATAATT----TCAGATTAT---CAGTT-GTTGATGGAAACAATA---ATATCAAATGATGTGTTTAACATCTAGTACAGAGTATGCA----AATGGTGGAGTACA-AACA-GCAATCATGTAACATTAT--GATTTTTAAAG----A-T--AAAA------CA-TGCG-CGCA--CTCAGGTGACCGTT---T-A-GGTCCAT--AGGCCTCTTGTTT
gi|3 : TGTTAAATTCATGACCCCTGGGTTCAGGTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCAATATTTTA------------GAAAATCTTGACCCTTGGACATCAAAAGAGCAAACCGCTTG----ATTACCTATAACGAGCAATGAACCCTCTTTTAGATACAATGTACGTAAAAACTCGTTTGCCCATTTGGATTTAGATCT-GAAATAGGAAACCGCATTTCTATGTGATGAAATAAAAC------------CAACATACTTATGGTAGAATTATAAACAGATAGTTTATATAG-CAACA---AT-TC--------TATT----ATCTAGTTCAGTGTATA-A----AATGGAGAAGTATG-AAAA-GCACCCGGGTAA-A------GA-TTCTAAAG----AGT--AAAA------
gi|4 : gccaTGTTATAAAACATAGCCACCTATCAT-AGAATTGTAATAAAACCAT---CAGTT-GT--AT----ACAATAGTTATACC-AGT-ATATCTCT--CATCTAGTACAAAGCGTG-A----AAT--TGGAG-ATG-TATT-ACAATGAAATAAAATT-T--G------AAAA----A-T--AAAA------CC-CACA-CACAAGCACAGGTAACa
gi|7 : cttttcctggaaTAATACAAAGTATAAATTAAAATGGAGAAGTTTA-AAAA-GCACACA-ATAACACAAT--GATCTCTAAAG----AGT--GAAAAATTGTCA-TATC-CATA--CTCAGGTGTCTAGT---A-A-GGCCCTT--GGACCTCTTacaatgatttctaaagagtagacaatgagcagactcaggtgactgttaattaaggcccatgggcttcttgttta
gi|10 : tctactcattcagtattagtaaaacttttggtaGAAGAATA-AGAA-GCAAACGGGTAACAC-----AATTTCTAAAAGACCA-T--AAAA------TG-TACATCG-----TCAGGTGACTGTT---A-A-GACCCAT--GGGCCTTTT
gi|8 : cgaGAAGTGTAGAACATGCA--TAGGTAACAC-ATTGGATTTGTAAAG----A-CCAAAAA------AA-TGTA-CATA--CTTATGTGACTGTT---A-C-GGCCCGT--GAGCCTCTTCTTt
gi|4 : ACA-CACAAGCA--CAGGTAACACAAT--GATTTCTAAAG----AGT--AGAC------AA-TGAG-CAGA--CTCAGGTGACTGTTAATT-AAGGCCCAT--GGGCTTCTTGTTTa
gi|12 : cttttcctggaatgttataaaacatagccacctatcatagaattgtaataaaaccatcagttgtatacaatagttataccagtatatctctcatctagtacaaagcgtgaaattggagatgtattacaatgaaataaaatttgaaaaataaaacccCA-AA-A-GCACACGGGTAACACAAT--GGTTTCTAAAA----A-C--CAAA------TAACGTG-CACA--CCCAGGCGACCGTT---A-A-GGTCTAT--GAGCCTCa
gi|15 : gattAT--GATTAGTGGAG----AGT--AAAG------AG-TGTG-CACT--CTTGGGTGACTG-------A-CATCTAT--AGGTCTCTTGTTT
gi|14 : cagttaagacaAT--GATTAGTGGAG----AGT--AAAG------AG-TGTG-CACT--CTTGGGTGACTG-------A-CATCTAT--AGGTCTCTTGTTTaaa
gi|16 : cagttaagaca--GATTTCTAAAG----A-CC-AAAA------TA-CATG-CATA--CTCAGGTGATTGTT---A-A-GGTCCAT--GGGTCTTTTATaaa
gi|17 : A--CTCTGGTGACCATT---TAA-GGCCCATGGAGG--TCTTGTTT
gi|18 : CAAGTGACTGTT---A-A-GACCCAT--AGGCCTTTTaaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTTTGAACATCAAGGAGACAGAATATTGTGATGACTATAATAAACAATGAGTGCTCATTTAAGATTGTGAAATCCATGACCTCAGGATCAGACATCAGAGTGAGGCTAGATACGTCGTGGAAAATGCAATAGGAAATCTTCTTAGAGGCTGGATATCAACGAGACCAACTGTGTGTGTGAATGTGATAAGCAAAGCAAAATGTATTACCCTTACGTTTAGGTCCCAGGATGGGACTTAATTGATCATTTGCTAAAAATGCAATATTTTTAGAATTCTTTAGAACAGATATAGAAACTCGCATTTCACTATGATAAAACTTACTCCTTATGGAAAAATTCGAAATTAACAATTGTGTAATATAGTTCTGCCAATCATTAATCATAAACTAGAAATTATAATATAGAAGCGTACAAAACACATGGGTTATTATGTAAAATAGGGATTTCAAAAGAGTAAAA
Unaligned ( gi|5 ): TTACTTCCGGACATGAAAGAGGCAAAATGTTTGAATTGTGTCCCATATAAAAATTGTGAAATTCATGAATCCGCGGTACAAGAGCTAGATTACATCATGCATTAGATCTTCAAGCAGGCACACTGTTTTAATGATAGTAGTAATAATGTGCAATGCAAAATATATTACCCTAGATTTCACTGATCAGGTTCCAGGGTGGGGCTTTGCTGATTATGCATTGAAACTAGAGTAGGTTTTAGA
Unaligned ( gi|6 ): CGATGGTCAGCCATGGTTGAATTTTGACAGGAGTTTTAAAAGAGCTAAGTTGGTCATGCATAATATATCAGAAAATCATATCTACTTCTTGACATCAAGGAGGCAAAATGTTTGAATTACCAGTAGCAATAAGCCCTCTTTGAAAACTGGAAAAAGTCATTCTCCATATGTTTAGGT
Unaligned ( gi|9 ): CACCTGGACACCAAGGAGGCAAAATGTTTGCACAATTATAATTAATGCATTGATCCCTGTATCATGACTGTGAAATTCTTTCCCCATGTTTTAGGT
Unaligned ( gi|11 ): TTCTCTACTTCCTGACATCTGGAAGGAAGTGAAATGTTTGAATGTTTACAATGAACATTGAGTGCTATACAAAAACTGAAATATAGGAATCC
Unaligned ( gi|13 ): CTACAATGTTAAATTCATGACCCCAGGGTTCAGATCATTGTATTGAAAATGCAATGTGAAAATCGTTTTTACTGTGGGGCATCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333 111 66666666666666666 4444444444 111 3333 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2222 1111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 5555555555555555 2222222222 222222222 22222222222 11111111 1111111111
lowQualScore : 3 4 6666666666666666666666666666666666 444 0 22222222222222222 9999999999 1 5 666 7 2 0 1111 2 2222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 0 88 4444 2222222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 11 3333333333333333 2222222222 222222222 0 5 22222222222 5 99 44444444 2 3 3 3 1 4444444444 99999 3
lowQualScore : . . .................................. ... . ................. .......... . . ... . . . .... . .... ................................................................................... . . . .. .... ....... ................................................................................... ... .. ................ .......... ......... . . ........... . .. ........ . . . . . .......... ..... .
lowQualScore : 0 0 8888888888888888888888888888888888 222 8 66666666666666666 6666666666 4 6 222 0 0 8 2222 5 2222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 3 7 33 2222 5555555 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 88 0000000000000000 0000000000 999999999 6 0 99999999999 0 00 55555555 5 6 6 6 0 8888888888 88888 6
consensus : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTGTGTTGAAAATGCAATATTTTA------------GAAAATC-T-TT----NACCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTTC--TATGTGATGTNATAAAACTTACTCACCTATCAA-ANANTTGTAGTAGAATTAT-AACAGTT-GTTTATATAG-CAATAGTTNTACCAA-T-ATATNTNT--CAT---CTAGTACAAA----------------GTAT-A-AA-----ATGGA---------GAAGTATA-AAA----------A-GCACACGGGT--------AACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
Reference ( family-195 ) : TGTTAAATTCATGACCCCTGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCAATATTTTA------------GAAAATC---TT----GACCCTTGGACATCAA-AAGAGCAAACCGCTTG----ATTACCTATAACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---AATGT-ACGTAAAAACTCGTTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGGAAACCGCATTTC--TATGTGATGNNATAAAACATAGCCACCTATCANCANANTTGTGGTAGAACCATAAACAGNTAGTTTATATAGACAACAGTTATACCAG-T-ATATNTCT--CAT---CTAGTACAAA----------------GTAT-A-AA-----ATGGA---------GAAGTATA-AAN----------A-GCACACGGGT--------AACACAATG-ATTTCTAAA-GAGTAAAANA----CGCG--CACACTCAGGTGACTG----TT-AAGGCCCATGGGCCTCTTGTTT
gi|1 : TGTGAAATCCATGACCTCAGGATCAGACATCAGAGTGAGGCT--AG--AT-ACGTCGTG--GAAAATGCAATA-----------------GGAAATC---TTCTTAGAGGCT-GGATATCAACGAGACCA-ACTGTGTG----TGTGAATGTGATAAGCAAAGCAAAATGTATTACCCTTACGTTTAGGTCCCAGGATGGGACTTAATTGATCATTTGCTAAAAATGCAATATTTTTAGAATTCTTTAGAACA-GATATAGAAACTCGCATTTCACTATG-------ATAAAACTTACTC-CTTATGGAAAAATTCG------AA--ATTAACAATT-GTGTA-ATA-----TAGTTCTGCCAA-T--CATTAAT--CATAAACTAG---AAA----------------TTAT-A-AT-----AT--A---------GAAGCGTA-CAA----------A-ACACATGGGTTATTATGTAAAATAGGG-ATTTCAAAA-GAGTAAAA
gi|10 : ttttgaacatcaaggagacagaatattgtgatgactataataaacaatgagtgctcatttaagatGA---------GAAGAATA-AGA----------A-GCAAACGGGT--------AACACAAT----TTCTAAAAGACCATAAAA----TGTA--CATCGTCAGGTGACTG----TT-AAGACCCATGGGCCTTTT
gi|12 : c-AAA----------A-GCACACGGGT--------AACACAATG-GTTTCTAAA-AACCAAATAA----CGTG--CACACCCAGGCGACCG----TT-AAGGTCTATGAGCCTCt
gi|13 : gattcTGTTAAATTCATGACCCCAGGGT------TCAG-A------T-CA---------TTGTATTGAAAATGCAATGT----------------GAAAATCGTTTT----TACTGTGGGGCATCA
gi|14 : ctacaaT--------AAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTT
gi|15 : cagtT--------AAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTTaaa
gi|16 : cagtG-ATTTCTAAA-GACCAAAATA----CATG--CATACTCAGGTGATTG----TT-AAGGTCCATGGGTCTTTTATaaa
gi|17 : ACTCTGGTGACCA----TTTAAGGCCCATGGAGGTCTTGTTT
gi|18 : CAAGTGACTG----TT-AAGACCCATAGGCCTTTTaaa
gi|2 : TGTGAAATTTATGACGTCTGAGT------TCTC-ATCA--TTGCAGCATTGATTATTTGTTGAAAATGC--TATTATATAATACCAAAAAGAAATTC-----------CCCATGAACCTTAA-TTAAGCAGACTGCCTGTTCGATTACATATGATGAGCAA-------TG------TGT--CTTT------------------G--------CATTTGCC-------TA-----TT--GA----T----ATCTTAAAATAGAAATTCCCATTTC--GTTGTGGTGTCATAAAACTTGCTCAC-----AA-ATAATTTCAG----ATTAT---CAGTT-GTTGATGGAAACAATA---ATATCAAATGATGTGTTTAACAT---CTAGTACAGA----------------GTAT-GCAA-----ATGGT---------GGAGTACA-AAC----------A-GCAATCATGT--------AACATTATG-ATTTTTAAA-GA-TAAAACA----TGCG--CGCACTCAGGTGACCG----TT-TAGGTCCATAGGCCTCTTGTTTct
gi|3 : TGTTAAATTCATGACCCCTGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCAATATTTTA------------GAAAATC---TT----GACCCTTGGACATCAA-AAGAGCAAACCGCTTG----ATTACCTATAACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---AATGT-ACGTAAAAACTCGTTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGGAAACCGCATTTC--TATGTGATGAAATAAAAC------------CAACATACTTATGGTAGAATTATAAACAGATAGTTTATATAG-CAACAATTCTA--------------T--TAT---CTAGTTCAGT----------------GTAT-A-AA-----ATGGA---------GAAGTATG-AAA----------A-GCACCCGGGT--------AA-A----G-A-TTCTAAA-GAGTAAAA
gi|4 : gccaTTTC--C-TGGAATGTTATAAAACATAGCCACCTATCAT-AGAATTGTAATAAAACCAT---CAG-----TTGTATA--CAATAGTTATACCAG-T-ATATCTCT--CAT---CTAGTACAAAGCGTGAAATTGGAGATGTATTA-CA-----ATGAAATAAAATTTGAAAAATA-AAACCCACACACAA-GCACA--GGT--------AACACAATG-ATTTCTAAA-GAGTAGACAA----TGAG--CAGACTCAGGTGACTGTTAATT-AAGGCCCATGGGCTTCTTGTTTa
gi|6 : ctGCT-AAG--TTGGTC--ATGC-----AT--AATATATCA------------GAAAATCATATC----TACTTCTTGACATCAA-GGAGGCAAAATGTTTGA---ATTACCAGT----AGCAA-------TA-A--GCCCT--CTTTGAAA-AC----------TGGAAAAAGTCATTC-TC-------CA-----TATG------TTTAGGTa
gi|7 : cgatggtcagccatggttgaattttgacaggagttttaaaagaTAATACAAA----------------GTAT-A-AATTAAAATGGA---------GAAGTTTA-AAA----------A-GCACAC-AAT--------AACACAATG-ATCTCTAAA-GAGTGAAAAATTGTCATATCCATACTCAGGTGTCTA----GT-AAGGCCCTTGGACCTCTT
gi|8 : tctactcattcagtattagtaaaacttttggta---------GAAGTGTAGAAC----------ATGCATA--GGT--------AACACATTGGATTTGTAAA-GACCAAAAAAA---TGTA--CATACTTATGTGACTG----TT-ACGGCCCGTGAGCCTCTTCTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTACTTCCGGACATGAAAGAGGCAAAATGTTTGAATTGTGTCCCATATAAAAATTGTGAAATTCATGAATCCGCGGTACAAGAGCTAGATTACATCATGCATTAGATCTTCAAGCAGGCACACTGTTTTAATGATAGTAGTAATAATGTGCAATGCAAAATATATTACCCTAGATTTCACTGATCAGGTTCCAGGGTGGGGCTTTGCTGATTATGCATTGAAACTAGAGTAGGTTTTAGA
Unaligned ( gi|9 ): CACCTGGACACCAAGGAGGCAAAATGTTTGCACAATTATAATTAATGCATTGATCCCTGTATCATGACTGTGAAATTCTTTCCCCATGTTTTAGGT
Unaligned ( gi|11 ): TTCTCTACTTCCTGACATCTGGAAGGAAGTGAAATGTTTGAATGTTTACAATGAACATTGAGTGCTATACAAAAACTGAAATATAGGAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555555555555555 111 22222 888888888888888888888888 111 3333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111 3333333333333333 3333333333333333 1 444444444444444444444444444444 11 111 22222 4444444444444444444 11111111 11111111111111111 11111 11111
lowQualScore : 1 1 0000000000000000000000000000000 0 3 111 11111 111111111111111111111111 111 3 0 1111 1 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 3 1 44444 1111111 9999999999999999 1 1 2222222222222222 0 111111111111111111111111111111 1 1 33 777 11 8 00000 8 4444444444444444444 88888888 99999999999999999 2 3 3 3 44444 66 1 11111 4
lowQualScore : . . ............................... . . ... ..... ........................ ... . . .... . .... ................................................................................... . . . ..... ....... ................ . . ................ . .............................. . . .. ... .. . ..... . ................... ........ ................. . . . . ..... .. . ..... .
lowQualScore : 0 0 0000000000000000000000000000000 2 2 888 66666 000000000000000000000000 555 2 8 2222 0 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 3 0 22222 5555555 0000000000000000 0 0 8888888888888888 0 888888888888888888888888888888 0 0 88 555 88 0 00000 0 3333333333333333333 11111111 66666666666666666 5 6 6 6 66666 11 2 77777 0
consensus : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-T-TTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA-T-ATATCTNT--CAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
Reference ( family-195 ) : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTGTGTTGAAAATGCA--ATATTTTAGAAAATC---------T-T-TNA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANANTTGTAGTAGAATTAT-AACAG-TTGTTTATATAG-CAATAGTTNTACCAA-T-ATATNTNT--CAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
gi|1 : TGTGAAATCCATGACCTCAGGATCAGACATCAGAGTGAGGCT--AG--AT-ACGTCGTG--GAAAATGCA--ATA-----GGAAATC---------T-TCTTAGAGGC---TGGATATCAACGAGACCAA-CTGTGTG----TGTGAATGTGATAAGCAAAGCAAAATGTATTACCCTTACGTTTAGGTCCCAGGATGGGACTTAATTGATCATTTGCTAAAAATGCAATATTTTTAGAATTCTTTAGAACA-GATATAGAAACTCGCATTTCACTATG-------ATAAAACTTACTC-CTTATGGA-AAAATT----CGAAAT--T-AACAA-TTGTGTA-AT-----ATAGTTCTGCCAA-T--CATTAAT--CATAAACTAG---AAATTATA-AT-----A-T--AGAAGCGT-------------------ACAAA--------ACACA------TGGGTTATTATGTAAAATAGGG-ATTTCAAAA-GAGTAAAA
gi|10 : ttttgaacatcaaggagacagaatattgtgatgactataataaacaatgagtgctcatttaagatGAGAAGAAT-------------------AAGAA--------GCAAA------CGG--------GTAACACAAT----TTCTAAAAGACCATAAAA----TGTA--CATCGTCAGGTGACTG----TT-AAGACCCATGGGCCTTTT
gi|12 : cAAAA--------GCACA------CGG--------GTAACACAATG-GTTTCTAAA-AACCAAATAA----CGTG--CACACCCAGGCGACCG----TT-AAGGTCTATGAGCCTCt
gi|13 : gattcTGTTAAATTCATGACCCCAGGGT------TCAG-AT-------CA---------TTGTATTGAAAATGCA--ATGT----GAAAATCGT-------T-T-TTA----CTGTGGGGCATCA
gi|14 : ctacaaTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTT
gi|15 : cagtTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTTaaa
gi|16 : cagtG-ATTTCTAAA-GACCAAAATA----CATG--CATACTCAGGTGATTG----TT-AAGGTCCATGGGTCTTTTATaaa
gi|17 : ACTCTGGTGACCA----TTTAAGGCCCATGGAGGTCTTGTTT
gi|2 : TGTGAAATTTATGACGTCTGAGT------TCTC-ATCA--TTGCAGCATTGATTATTTGTTGAAAATGC----TATTATATAATACCAAAAAGAAAT-T-C------CCCATGAACCTTAA-TTAAGCAGACTGCCTGTTCGATTACATATGATGAGCAA-------TG------TGT--CTTT------------------G--------CATTTGCC-------TA-----TT--GA----T----ATCTTAAAATAGAAATTCCCATTT--CGTTGTGGTGTCATAAAACTTGCTCAC-----AA-ATAATTTCAG----ATTAT---CAG-TTGTTGATGGAAACAATA---ATATCAAATGATGTGTTTAACAT---CTAGTACAGAGTATGCAA-----A-TGGTGGAGTAC-------------------AAACA--------GCAAT------CAT--------GTAACATTATG-ATTTTTAAA-GA-TAAAACA----TGCG--CGCACTCAGGTGACCG----TT-TAGGTCCATAGGCCTCTTGTTTaaa
gi|3 : TGTTAAATTCATGACCCCTGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCA--ATATTTTAGAAAATC-----------T-TGA----CCCTTGGACATCAA-AAGAGCAAACCGCTTG----ATTACCTATAACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---AATGT-ACGTAAAAACTCGTTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGGAAACCGCATTT--CTATGTGATGAAATAAAAC------------CAACATACTTATGGTAGAATTATAAACAGATAGTTTATATAG-CAA---------CAA-T----TCTAT--TAT---CTAGTTCAGTGTATA-AA-----A-TGGAGAAGTAT-------------------GAAAA--------GCACC------CGG--------GTAA-A----G-A-TTCTAAA-GAGTAAAAA
gi|4 : gccaTTT--CC-TGGAATGTTATAAAACATAGCCACCTATCAT-AGAATTGTAATAAAACCAT---CAG-TTGT----ATA--CAATAGTTATACCAG-T-ATATCTCT--CAT---CTAGTACAAAGCGTG-AA-----ATTGGAGATGTATTACAATGAAATAAAATTTGAAAAATAAAACCCACACACAAGCACAG--------GTAACACAATG-ATTTCTAAA-GAGTAGACAA----TGAG--CAGACTCAGGTGACTGTTAATT-AAGGCCCATGGGCTTCTTGTTT
gi|6 : ctATGCATAATATATCAGAAAATCA--------TAT-CTA----CTTCTTGACATCAA-GGAGGCAAAATGTTTGA---ATTACCAGT----AGCAA-------TA-A--GCCCT--CTTTGAAA-AC-----TG--G---AAAAAGTCATTC-TC-------CA-----TATG------TTTAGGTa
gi|7 : cgatggtcagccatggttgaattttgacaggagttttaaaagagctaagttggtcTAATACAAAGTATA-AATTAAAA-TGGAGAAGTTT-------------------AAAAA--------GCACA------CAA---------TAACACAATG-ATCTCTAAA-GAGTGAAAAATTGTCATATCCATACTCAGGTGTCTA----GT-AAGGCCCTTGGACCTCTT
gi|8 : tctactcattcagtattagtaaaacttttggtaGAAGTGT-------------------AGAAC--------ATGCA------TAG--------GTAACACATTGGATTTGTAAA-GACCAAAAAAA---TGTA--CATACTTATGTGACTG----TT-ACGGCCCGTGAGCCTCTTCTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTACTTCCGGACATGAAAGAGGCAAAATGTTTGAATTGTGTCCCATATAAAAATTGTGAAATTCATGAATCCGCGGTACAAGAGCTAGATTACATCATGCATTAGATCTTCAAGCAGGCACACTGTTTTAATGATAGTAGTAATAATGTGCAATGCAAAATATATTACCCTAGATTTCACTGATCAGGTTCCAGGGTGGGGCTTTGCTGATTATGCATTGAAACTAGAGTAGGTTTTAGA
Unaligned ( gi|9 ): CACCTGGACACCAAGGAGGCAAAATGTTTGCACAATTATAATTAATGCATTGATCCCTGTATCATGACTGTGAAATTCTTTCCCCATGTTTTAGGT
Unaligned ( gi|11 ): TTCTCTACTTCCTGACATCTGGAAGGAAGTGAAATGTTTGAATGTTTACAATGAACATTGAGTGCTATACAAAAACTGAAATATAGGAATCC
Unaligned ( gi|18 ): CAAGTGACTGTTAAGACCCATAGGCCTTTTCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444 111 22222 66666666666666666666666 111 3333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111 3333333333333333 1111111 222 1 44444444444444444444444444444444 111 22222 4444444444444444444 11111111 11111111111111111 11111 11111
lowQualScore : 1 1 8888888888888888888888888888888 0 3 111 11111 55555555555555555555555 111 3 0 1111 1 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 3 1 44444 1111111 9999999999999999 1 9999999 7 888 0 55555555555555555555555555555555 1 777 11 8 00000 8 4444444444444444444 88888888 99999999999999999 2 3 3 3 44444 66 1 11111 4
lowQualScore : . . ............................... . . ... ..... ....................... ... . . .... . .... ................................................................................... . . . ..... ....... ................ . ....... . ... . ................................ . ... .. . ..... . ................... ........ ................. . . . . ..... .. . ..... .
lowQualScore : 0 0 0000000000000000000000000000000 2 2 888 66666 22222222222222222222222 555 2 8 2222 0 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 3 0 22222 5555555 0000000000000000 0 8888888 0 555 0 22222222222222222222222222222222 0 555 88 0 00000 0 3333333333333333333 11111111 66666666666666666 5 6 6 6 66666 11 2 77777 0
consensus : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
Reference ( family-195 ) : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TATATCTNTCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
gi|1 : TGTGAAATCCATGACCTCAGGATCAGACATCAGAGTGAGGCT--AG--AT-ACGTCGTG--GAAAATGCA--ATA-----GGAAATCT--------T-CTTAGAGGC---TGGATATCAACGAGACCAA-CTGTGTG----TGTGAATGTGATAAGCAAAGCAAAATGTATTACCCTTACGTTTAGGTCCCAGGATGGGACTTAATTGATCATTTGCTAAAAATGCAATATTTTTAGAATTCTTTAGAACA-GATATAGAAACTCGCATTTCACTATG-------ATAAAACTTACTC-CTTATGGA-AAAATTC----GAAAT--T-AACAA-TTGTGTA-AT-----ATAGTTCTGCCAA----T-CATTAATCATAAACTAG---AAATTATA-AT-----A-T--AGAAGCGT-------------------ACAAA--------ACACA------TGGGTTATTATGTAAAATAGGG-ATTTCAAAA-GAGTAAAA
gi|10 : ttttgaacatcaaggagacagaatattgtgatgactataataaacaatgagtgctcatttaagatGAGAAGAAT-------------------AAGAA--------GCAAA------CGG--------GTAACACAAT----TTCTAAAAGACCATAAAA----TGTA--CATCGTCAGGTGACTG----TT-AAGACCCATGGGCCTTTT
gi|12 : cAAAA--------GCACA------CGG--------GTAACACAATG-GTTTCTAAA-AACCAAATAA----CGTG--CACACCCAGGCGACCG----TT-AAGGTCTATGAGCCTCt
gi|13 : gattcTGTTAAATTCATGACCCCAGGGT------TCAG-A------T-CA---------TTGTATTGAAAATGCA--ATGT----GAAAATCGT-------T-TTTA----CTGTGGGGCATCA
gi|14 : ctacaaTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTT
gi|15 : cagtTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTTaaa
gi|16 : cagtG-ATTTCTAAA-GACCAAAATA----CATG--CATACTCAGGTGATTG----TT-AAGGTCCATGGGTCTTTTATaaa
gi|17 : ACTCTGGTGACCA----TTTAAGGCCCATGGAGGTCTTGTTT
gi|2 : TGTGAAATTTATGACGTCTGAGT------TCTC-ATCA--TTGCAGCATTGATTATTTGTTGAAAATGC----TATTATATAATACCAAAAAGAAAT-TC------CCCATGAACCTTAA-TTAAGCAGACTGCCTGTTCGATTACATATGATGAGCAA-------TG------TGT--CTTT------------------G--------CATTTGCC-------TA-----TT--GA----T----ATCTTAAAATAGAAATTCCCATTT--CGTTGTGGTGTCATAAAACTTGCTCAC-----AA-ATAATTTCAG----ATTAT---CAG-TTGTTGATGGAAACAATA---ATATCAAATGATGTGTTTAACAT---CTAGTACAGAGTATGCAA-----A-TGGTGGAGTAC-------------------AAACA--------GCAAT------CAT--------GTAACATTATG-ATTTTTAAA-GA-TAAAACA----TGCG--CGCACTCAGGTGACCG----TT-TAGGTCCATAGGCCTCTTGTTTaaa
gi|3 : TGTTAAATTCATGACCCCTGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCA--ATATTTTAGAAAATC-----------TTGA----CCCTTGGACATCAA-AAGAGCAAACCGCTTG----ATTACCTATAACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---AATGT-ACGTAAAAACTCGTTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGGAAACCGCATTT--CTATGTGATGAAATAAAAC------------CAACATACTTATGGTAGAATTATAAACAGATAGTTTATATAG-CAA---------CAA----T---TCTATTAT---CTAGTTCAGTGTATA-AA-----A-TGGAGAAGTAT-------------------GAAAA--------GCACC------CGG--------GTAA-A----G-A-TTCTAAA-GAGTAAAAA
gi|4 : gccaTTT--CC-TGGAATGTTATAAAACATAGCCACCTATCAT-AGAATTGTAATAAAACCAT---CAG-TTGT----ATA--CAATAGTTATACCAG----TATATCTCTCAT---CTAGTACAAAGCGTG-AA-----ATTGGAGATGTATTACAATGAAATAAAATTTGAAAAATAAAACCCACACACAAGCACAG--------GTAACACAATG-ATTTCTAAA-GAGTAGACAA----TGAG--CAGACTCAGGTGACTGTTAATT-AAGGCCCATGGGCTTCTTGTTT
gi|6 : ctATGCATAATATATCAGAAAATCA--------TATCTA----CTTCTTGACATCAA-GGAGGCAAAATGTTTGA---ATTACCAGT----AGCAA-------TA-A--GCCCT--CTTTGAAA-AC-----TG--G---AAAAAGTCATTC-TC-------CA-----TATG------TTTAGGTa
gi|7 : cgatggtcagccatggttgaattttgacaggagttttaaaagagctaagttggtcTAATACAAAGTATA-AATTAAAA-TGGAGAAGTTT-------------------AAAAA--------GCACA------CAA---------TAACACAATG-ATCTCTAAA-GAGTGAAAAATTGTCATATCCATACTCAGGTGTCTA----GT-AAGGCCCTTGGACCTCTT
gi|8 : tctactcattcagtattagtaaaacttttggtaGAAGTGT-------------------AGAAC--------ATGCA------TAG--------GTAACACATTGGATTTGTAAA-GACCAAAAAAA---TGTA--CATACTTATGTGACTG----TT-ACGGCCCGTGAGCCTCTTCTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTACTTCCGGACATGAAAGAGGCAAAATGTTTGAATTGTGTCCCATATAAAAATTGTGAAATTCATGAATCCGCGGTACAAGAGCTAGATTACATCATGCATTAGATCTTCAAGCAGGCACACTGTTTTAATGATAGTAGTAATAATGTGCAATGCAAAATATATTACCCTAGATTTCACTGATCAGGTTCCAGGGTGGGGCTTTGCTGATTATGCATTGAAACTAGAGTAGGTTTTAGA
Unaligned ( gi|9 ): CACCTGGACACCAAGGAGGCAAAATGTTTGCACAATTATAATTAATGCATTGATCCCTGTATCATGACTGTGAAATTCTTTCCCCATGTTTTAGGT
Unaligned ( gi|11 ): TTCTCTACTTCCTGACATCTGGAAGGAAGTGAAATGTTTGAATGTTTACAATGAACATTGAGTGCTATACAAAAACTGAAATATAGGAATCC
Unaligned ( gi|18 ): CAAGTGACTGTTAAGACCCATAGGCCTTTTCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444 111 22222 66666666666666666666666 111 3333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111 3333333333333333 1111111 222 1 44444444444444444444444444444444 111 22222 4444444444444444444 11111111 11111111111111111 11111 11111
lowQualScore : 1 1 8888888888888888888888888888888 0 3 111 11111 55555555555555555555555 111 3 0 1111 1 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 3 1 44444 1111111 9999999999999999 1 9999999 7 888 0 55555555555555555555555555555555 777 11 8 00000 8 4444444444444444444 88888888 99999999999999999 2 3 3 3 44444 66 1 11111 4
lowQualScore : . . ............................... . . ... ..... ....................... ... . . .... . .... ................................................................................... . . . ..... ....... ................ . ....... . ... . ................................ ... .. . ..... . ................... ........ ................. . . . . ..... .. . ..... .
lowQualScore : 0 0 0000000000000000000000000000000 2 2 888 66666 22222222222222222222222 555 2 8 2222 0 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 3 0 22222 5555555 0000000000000000 0 8888888 0 555 0 00000000000000000000000000000000 555 88 0 00000 0 3333333333333333333 11111111 66666666666666666 5 6 6 6 66666 11 2 77777 0
consensus : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
Reference ( family-195 ) : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
gi|1 : TGTGAAATCCATGACCTCAGGATCAGACATCAGAGTGAGGCT--AG--AT-ACGTCGTG--GAAAATGCA--ATA-----GGAAATCT--------T-CTTAGAGGC---TGGATATCAACGAGACCAA-CTGTGTG----TGTGAATGTGATAAGCAAAGCAAAATGTATTACCCTTACGTTTAGGTCCCAGGATGGGACTTAATTGATCATTTGCTAAAAATGCAATATTTTTAGAATTCTTTAGAACA-GATATAGAAACTCGCATTTCACTATG-------ATAAAACTTACTC-CTTATGGA-AAAATTC----GAAAT--T-AACAA-TTGTGTA-AT-----ATAGTTCTGCCAA----T-CATTAATCATAAACTAG---AAATTATA-AT-----A-T--AGAAGCGT-------------------ACAAA--------ACACA------TGGGTTATTATGTAAAATAGGG-ATTTCAAAA-GAGTAAAA
gi|10 : ttttgaacatcaaggagacagaatattgtgatgactataataaacaatgagtgctcatttaagatGAGAAGAAT-------------------AAGAA--------GCAAA------CGG--------GTAACACAAT----TTCTAAAAGACCATAAAA----TGTA--CATCGTCAGGTGACTG----TT-AAGACCCATGGGCCTTTT
gi|12 : cAAAA--------GCACA------CGG--------GTAACACAATG-GTTTCTAAA-AACCAAATAA----CGTG--CACACCCAGGCGACCG----TT-AAGGTCTATGAGCCTCt
gi|13 : gattcTGTTAAATTCATGACCCCAGGGT------TCAG-A------T-CA---------TTGTATTGAAAATGCA--ATGT----GAAAATCGT-------T-TTTA----CTGTGGGGCATCA
gi|14 : ctacaaTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTT
gi|15 : cagtTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTTaaa
gi|16 : cagtG-ATTTCTAAA-GACCAAAATA----CATG--CATACTCAGGTGATTG----TT-AAGGTCCATGGGTCTTTTATaaa
gi|17 : ACTCTGGTGACCA----TTTAAGGCCCATGGAGGTCTTGTTT
gi|2 : TGTGAAATTTATGACGTCTGAGT------TCTC-ATCA--TTGCAGCATTGATTATTTGTTGAAAATGC----TATTATATAATACCAAAAAGAAAT-TC------CCCATGAACCTTAA-TTAAGCAGACTGCCTGTTCGATTACATATGATGAGCAA-------TG------TGT--CTTT------------------G--------CATTTGCC-------TA-----TT--GA----T----ATCTTAAAATAGAAATTCCCATTT--CGTTGTGGTGTCATAAAACTTGCTCAC-----AA-ATAATTTCAG----ATTAT---CAG-TTGTTGATGGAAACAATA---ATATCAAATGATGTGTTTAACAT---CTAGTACAGAGTATGCAA-----A-TGGTGGAGTAC-------------------AAACA--------GCAAT------CAT--------GTAACATTATG-ATTTTTAAA-GA-TAAAACA----TGCG--CGCACTCAGGTGACCG----TT-TAGGTCCATAGGCCTCTTGTTTaaa
gi|3 : TGTTAAATTCATGACCCCTGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCA--ATATTTTAGAAAATC-----------TTGA----CCCTTGGACATCAA-AAGAGCAAACCGCTTG----ATTACCTATAACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---AATGT-ACGTAAAAACTCGTTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGGAAACCGCATTT--CTATGTGATGAAATAAAAC------------CAACATACTTATGGTAGAATTATAAACAGATAGTTTATATAG-CAA---------CAA----T---TCTATTAT---CTAGTTCAGTGTATA-AA-----A-TGGAGAAGTAT-------------------GAAAA--------GCACC------CGG--------GTAA-A----G-A-TTCTAAA-GAGTAAAAA
gi|4 : gccaTTT--CC-TGGAATGTTATAAAACATAGCCACCTATCAT-AGAATTGTAATAAAACCAT---CAG-TTGT----ATA--CAATAGTTATACCAG----TATATCTCTCAT---CTAGTACAAAGCGTG-AA-----ATTGGAGATGTATTACAATGAAATAAAATTTGAAAAATAAAACCCACACACAAGCACAG--------GTAACACAATG-ATTTCTAAA-GAGTAGACAA----TGAG--CAGACTCAGGTGACTGTTAATT-AAGGCCCATGGGCTTCTTGTTT
gi|6 : ctATGCATAATATATCAGAAAATCA--------TATCTA----CTTCTTGACATCAA-GGAGGCAAAATGTTTGA---ATTACCAGT----AGCAA-------TA-A--GCCCT--CTTTGAAA-AC-----TG--G---AAAAAGTCATTC-TC-------CA-----TATG------TTTAGGTa
gi|7 : cgatggtcagccatggttgaattttgacaggagttttaaaagagctaagttggtcTAATACAAAGTATA-AATTAAAA-TGGAGAAGTTT-------------------AAAAA--------GCACA------CAA---------TAACACAATG-ATCTCTAAA-GAGTGAAAAATTGTCATATCCATACTCAGGTGTCTA----GT-AAGGCCCTTGGACCTCTT
gi|8 : tctactcattcagtattagtaaaacttttggtaGAAGTGT-------------------AGAAC--------ATGCA------TAG--------GTAACACATTGGATTTGTAAA-GACCAAAAAAA---TGTA--CATACTTATGTGACTG----TT-ACGGCCCGTGAGCCTCTTCTT
blockSeqs : T A TCTCATCATTGCAGCATTGATT T ATA TTATA AAAAAGAAATTCCCCA TT A TTCG A GATG TGAACCCTCTTTTAGATACAATGTACGTAAAAACTCGTTTGCCCATTTGGA T T T CGT TGGTGTC ATAGCCACCTATCAT T ATGGTAG T AAA A TGATGGAAACAATAATATCAAATGATGTG . TA C TTAAA T TACAATGAAATAAAATTTG TAAAACCC CAAGCACAG C G A C TTGTC TC C TTAAT T
blockSeqs : G T TCAGGTGAGGCTCAGTTGATC T A TTTTA GTTTTTACTGT AA A A C AACG TAAGCCCTCTTTGAAAACTGGAAAAAGTCATTCTCCATATG T . A CTA TGATGAA TTGCTCACAA T GTAATAA T . . ATACAATAGTTATACCAGTATA . TT . . . . . CGG C . . C AT . T T .
blockSeqs : T T TCAGATCA T A TATCA ATATCTACTTC GG A . C . TGTGTCTTTGCATTTGCCTATTGA . CC GAATGTT CAAC G TCAG C . . TTATATAGCAACAAT . TA . . . . . CGG G . . G C . T T .
blockSeqs : . T TTGACCCT TA . . . . . CAT G . . G T . T T .
blockSeqs : . . CGG C . . C T . C T .
blockSeqs : . . CAA C . . G C . C G .
blockSeqs : . TAG C . . G T . T T .
blockSeqs : C . . G T . T . .
blockSeqs : . . . C T . .
blockSeqs : . . .
blockSeqCons : TTTTA TA CGG**************
originalCons : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
finalCons : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACACGG--------------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTACTTCCGGACATGAAAGAGGCAAAATGTTTGAATTGTGTCCCATATAAAAATTGTGAAATTCATGAATCCGCGGTACAAGAGCTAGATTACATCATGCATTAGATCTTCAAGCAGGCACACTGTTTTAATGATAGTAGTAATAATGTGCAATGCAAAATATATTACCCTAGATTTCACTGATCAGGTTCCAGGGTGGGGCTTTGCTGATTATGCATTGAAACTAGAGTAGGTTTTAGA
Unaligned ( gi|9 ): CACCTGGACACCAAGGAGGCAAAATGTTTGCACAATTATAATTAATGCATTGATCCCTGTATCATGACTGTGAAATTCTTTCCCCATGTTTTAGGT
Unaligned ( gi|11 ): TTCTCTACTTCCTGACATCTGGAAGGAAGTGAAATGTTTGAATGTTTACAATGAACATTGAGTGCTATACAAAAACTGAAATATAGGAATCC
Unaligned ( gi|18 ): CAAGTGACTGTTAAGACCCATAGGCCTTTTCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444 111 22222 66666666666666666666666 111 3333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111 3333333333333333 1111111 222 1 44444444444444444444444444444444 111 22222 4444444444444444444 11111111 11111111111111111 11111 11111
lowQualScore : 1 1 8888888888888888888888888888888 0 3 111 11111 55555555555555555555555 111 3 0 1111 1 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 3 1 44444 1111111 9999999999999999 1 9999999 7 888 0 55555555555555555555555555555555 777 11 8 00000 8 4444444444444444444 88888888 99999999999999999 2 3 3 3 44444 66 1 11111 4
lowQualScore : . . ............................... . . ... ..... ....................... ... . . .... . .... ................................................................................... . . . ..... ....... ................ . ....... . ... . ................................ ... .. . ..... . ................... ........ ................. . . . . ..... .. . ..... .
lowQualScore : 0 0 0000000000000000000000000000000 2 2 888 66666 22222222222222222222222 555 2 8 2222 0 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 3 0 22222 5555555 0000000000000000 0 8888888 0 555 0 00000000000000000000000000000000 555 88 0 00000 0 3333333333333333333 11111111 66666666666666666 5 6 6 6 66666 11 2 77777 0
consensus : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
Reference ( family-195 ) : TGTNAAATTCATGACCCCNGGGT------TCAG-GTGAGGCT-CAG--TTGATNTTGTGTTGAAAATGCA--ATATTTTAGAAAATCG--------T-TTTA----CCCTTGGACATCAA-GAGAGCAAACTGCTTG----ATTACNTGTGACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---GATG--ACGTAAAAANTCATTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGAAANTCGCATTT--CTATGTGATGTNATAAAACTTACTCACCTATCAA-ANAATTNTAGTAAAATTAT-AACAG-TTGTTTATATAG-CAATAGTTATACCAA----TGTATCTATCAT---CTAGTACAAAGTATA-AA-----A-TGGAGAAGTAT-------------------AAAAA--------GCACA------CGG--------GTAACACAATG-ATTTCTAAA-GAGTAAAAAA----CGTG--CACACTCAGGTGACCG----TT-AAGGCCCATGGGCCTCTTGTTT
gi|1 : TGTGAAATCCATGACCTCAGGATCAGACATCAGAGTGAGGCT--AG--AT-ACGTCGTG--GAAAATGCA--ATA-----GGAAATCT--------T-CTTAGAGGC---TGGATATCAACGAGACCAA-CTGTGTG----TGTGAATGTGATAAGCAAAGCAAAATGTATTACCCTTACGTTTAGGTCCCAGGATGGGACTTAATTGATCATTTGCTAAAAATGCAATATTTTTAGAATTCTTTAGAACA-GATATAGAAACTCGCATTTCACTATG-------ATAAAACTTACTC-CTTATGGA-AAAATTC----GAAAT--T-AACAA-TTGTGTA-AT-----ATAGTTCTGCCAA----T-CATTAATCATAAACTAG---AAATTATA-AT-----A-T--AGAAGCGT-------------------ACAAA--------ACACA------TGGGTTATTATGTAAAATAGGG-ATTTCAAAA-GAGTAAAA
gi|10 : ttttgaacatcaaggagacagaatattgtgatgactataataaacaatgagtgctcatttaagatGAGAAGAAT-------------------AAGAA--------GCAAA------CGG--------GTAACACAAT----TTCTAAAAGACCATAAAA----TGTA--CATCGTCAGGTGACTG----TT-AAGACCCATGGGCCTTTT
gi|12 : cAAAA--------GCACA------CGG--------GTAACACAATG-GTTTCTAAA-AACCAAATAA----CGTG--CACACCCAGGCGACCG----TT-AAGGTCTATGAGCCTCt
gi|13 : gattcTGTTAAATTCATGACCCCAGGGT------TCAG-A------T-CA---------TTGTATTGAAAATGCA--ATGT----GAAAATCGT-------T-TTTA----CTGTGGGGCATCA
gi|14 : ctacaaTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTT
gi|15 : cagtTAAGACAATG-ATTAGTGGA-GAGTAAAGAG----TGTG--CACTCTTGGGTGACTG--------ACATCTATAGGTCTCTTGTTTaaa
gi|16 : cagtG-ATTTCTAAA-GACCAAAATA----CATG--CATACTCAGGTGATTG----TT-AAGGTCCATGGGTCTTTTATaaa
gi|17 : ACTCTGGTGACCA----TTTAAGGCCCATGGAGGTCTTGTTT
gi|2 : TGTGAAATTTATGACGTCTGAGT------TCTC-ATCA--TTGCAGCATTGATTATTTGTTGAAAATGC----TATTATATAATACCAAAAAGAAAT-TC------CCCATGAACCTTAA-TTAAGCAGACTGCCTGTTCGATTACATATGATGAGCAA-------TG------TGT--CTTT------------------G--------CATTTGCC-------TA-----TT--GA----T----ATCTTAAAATAGAAATTCCCATTT--CGTTGTGGTGTCATAAAACTTGCTCAC-----AA-ATAATTTCAG----ATTAT---CAG-TTGTTGATGGAAACAATA---ATATCAAATGATGTGTTTAACAT---CTAGTACAGAGTATGCAA-----A-TGGTGGAGTAC-------------------AAACA--------GCAAT------CAT--------GTAACATTATG-ATTTTTAAA-GA-TAAAACA----TGCG--CGCACTCAGGTGACCG----TT-TAGGTCCATAGGCCTCTTGTTTaaa
gi|3 : TGTTAAATTCATGACCCCTGGGT------TCAG-GTGAGGCT-CAG--TTGATCTTATGTTAAAAATGCA--ATATTTTAGAAAATC-----------TTGA----CCCTTGGACATCAA-AAGAGCAAACCGCTTG----ATTACCTATAACGAGCAA-------TG-A--ACCCT--CTTTTAGATAC---AATGT-ACGTAAAAACTCGTTTGCC-------CA-----TTTGGA----TTTAGATCT-GAAATAGGAAACCGCATTT--CTATGTGATGAAATAAAAC------------CAACATACTTATGGTAGAATTATAAACAGATAGTTTATATAG-CAA---------CAA----T---TCTATTAT---CTAGTTCAGTGTATA-AA-----A-TGGAGAAGTAT-------------------GAAAA--------GCACC------CGG--------GTAA-A----G-A-TTCTAAA-GAGTAAAAA
gi|4 : gccaTTT--CC-TGGAATGTTATAAAACATAGCCACCTATCAT-AGAATTGTAATAAAACCAT---CAG-TTGT----ATA--CAATAGTTATACCAG----TATATCTCTCAT---CTAGTACAAAGCGTG-AA-----ATTGGAGATGTATTACAATGAAATAAAATTTGAAAAATAAAACCCACACACAAGCACAG--------GTAACACAATG-ATTTCTAAA-GAGTAGACAA----TGAG--CAGACTCAGGTGACTGTTAATT-AAGGCCCATGGGCTTCTTGTTT
gi|6 : ctATGCATAATATATCAGAAAATCA--------TATCTA----CTTCTTGACATCAA-GGAGGCAAAATGTTTGA---ATTACCAGT----AGCAA-------TA-A--GCCCT--CTTTGAAA-AC-----TG--G---AAAAAGTCATTC-TC-------CA-----TATG------TTTAGGTa
gi|7 : cgatggtcagccatggttgaattttgacaggagttttaaaagagctaagttggtcTAATACAAAGTATA-AATTAAAA-TGGAGAAGTTT-------------------AAAAA--------GCACA------CAA---------TAACACAATG-ATCTCTAAA-GAGTGAAAAATTGTCATATCCATACTCAGGTGTCTA----GT-AAGGCCCTTGGACCTCTT
gi|8 : tctactcattcagtattagtaaaacttttggtaGAAGTGT-------------------AGAAC--------ATGCA------TAG--------GTAACACATTGGATTTGTAAA-GACCAAAAAAA---TGTA--CATACTTATGTGACTG----TT-ACGGCCCGTGAGCCTCTTCTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTACTTCCGGACATGAAAGAGGCAAAATGTTTGAATTGTGTCCCATATAAAAATTGTGAAATTCATGAATCCGCGGTACAAGAGCTAGATTACATCATGCATTAGATCTTCAAGCAGGCACACTGTTTTAATGATAGTAGTAATAATGTGCAATGCAAAATATATTACCCTAGATTTCACTGATCAGGTTCCAGGGTGGGGCTTTGCTGATTATGCATTGAAACTAGAGTAGGTTTTAGA
Unaligned ( gi|9 ): CACCTGGACACCAAGGAGGCAAAATGTTTGCACAATTATAATTAATGCATTGATCCCTGTATCATGACTGTGAAATTCTTTCCCCATGTTTTAGGT
Unaligned ( gi|11 ): TTCTCTACTTCCTGACATCTGGAAGGAAGTGAAATGTTTGAATGTTTACAATGAACATTGAGTGCTATACAAAAACTGAAATATAGGAATCC
Unaligned ( gi|18 ): CAAGTGACTGTTAAGACCCATAGGCCTTTTCT