lowQualScore : 1111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111 111111111111111111111111111111111
lowQualScore : 4 1 4 1 8888888 4 1 6666666666666666666666666 6666 1 1 4 4 666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222 22 77777777777 222 2 88888888888 2 2 888888888 2 22 9999999999999999999 1 1 11 2 3333333 222222222222222222222222222222222 4 1 2 2 333 3333 333333333 2 88888888888 44444 22 11 44444 111111 33 1 3333333333 111 1 888888888888888888888888888888888 1 2222 2222 11 1 666666666666 2222222222222222 44444444444444444444444 333333333333333
lowQualScore : 0 5 0 6 5 1111111 0 7 6 6 7777777777777777777777777 2222 7 7 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 66 4 44444444444 111 2 3 4 88888888888 4 0 4 0 777777777 0 11 7777777777777777777 4 2 5 5 2 99 2 0 2222222 3 444444444444444444444444444444444 4 0 6 5 0 0 4 555 9999 111111111 7 6 11111111111 66666 66 7 44 66 2 00000 444444 00 3 3 6 7777777777 333 8 8 0 0 9 0 7 6 555555555555555555555555555555555 6 5 4444 9 2222 88 0 2 5 2 88 33 66 888888888888 0 8888888888888888 33 55555 66666666666666666666666 5 333 2 55555 2 6666 000000000000000 4
lowQualScore : . . . . . ....... . . . . ......................... .... . . . . .................................................................................... ...... .. . ........... ... . . . ........... . . . . ......... . .. ................... . . . . . .. . . ....... . ................................. . . . . . . . ... .... ......... . . ........... ..... .. . .. .. . ..... ...... .. . . . .......... ... . . . . . . . . ................................. . . .... . .... .. . . . . .. .. .. ............ . ................ .. ..... ....................... . ... . ..... . .... ............... .
lowQualScore : 0 0 0 0 0 0000000 0 0 0 0 0000000000000000000000000 0000 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000 00 0 00000000000 000 5 0 0 00000000000 0 0 0 0 000000000 0 77 0000000000000000000 0 5 5 5 5 00 5 0 5555555 0 555555555555555555555555555555555 0 0 0 5 0 0 0 000 0000 555555555 5 0 55555555555 00000 00 3 88 22 5 22222 888888 88 2 0 5 8888888888 222 0 0 8 8 2 7 3 0 777777777777777777777777777777777 0 0 0000 0 0000 33 8 7 7 0 00 44 99 888888888888 5 7777777777777777 11 66666 77777777777777777777777 1 999 2 66666 2 1111 999999999999999 4
consensus : NATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG----TTATTATTTTAATTTACATNTATATATTCTGTNTGGCATTTGA-TCAAATAAACTACATGTANTTTTAGCNGACTGTCTAGTAGTAGGGAGTGTGNTGGCTCGGCCTCANTTGTCTGGCGCA-TTATTAGTATGAATTATCAATTC-TTT-------AACTGTTTTTGATCNCCCACGCTGTTACGTTTACTCNAGACGNTANGGTTACTCCTCATTACGCATGTAGACTCNGTTCACCTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAANGAANGTCGTTTATACCGATTTCTCATATAGAGAATTTCATGNTTGATTTTTCAACAAGCAATTGAGTGAAAAACGCACTAAAAGATAACTACA--TACATGTATGTGAAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACATTAA----CACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTG--CGT-GGAGATAAGTAACTTATAATT-CCTAGTCAATTGAA-CTATAAAAATTATATACATGTTCTATTTTAA-TTTT-CTAA-G-AAATACAA-----TCT-TT-TA---TTATATAAATAAAAC-AGGTGTC--TTTATACTGTTT-AAAAAAGT--GTACAATCACAAAAACAA-ACACACACAAAAAATACAGTTACATGTTATAGTT--ATA--TGTAATA--TATATTGGGGGCGAGTTGTCCT----NAAG-NG---G--GGG-----CGAGTTGTCCT--GA--N---A--G-G-------GGGC---GAG-TT-----G-TCT----T----G----G-----GGGCGAGTTGTCC
Reference ( gi|2 ) : TATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTATAATTTTCATTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGCAG---------TTGTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTTT-------GATT--------TCTCCCACGCTGTTATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCA-TT-------T----TG---AAATACTC-----AATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGAT---TTTTCCCACAAG-AATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTG-A---ATATTTACACTGAACTTGACATTTACATTAATCACATTAC----CACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA--CGT-GGAGATAAGTAATTTATAATT-CCTAGTCAATTGAA-CTATAAAAATTATATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-TT-T----TTATACAAATAAAACGAGGTGTC--TTTATATTGTTTTAAAAAAGT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTATAGTT--ATA--TCTAATACATATATTGGAGGCGAGTTGTCCT----TAAG-TG---G--GGG-----CGAGTTGTCCT--AA--T---A--G-G-------GGAC---GAG-TT-----G-TCT----T----T----G-----GGGTGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG---------------ATT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTT-TAGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT--TTATTAGTATGAATTATCAATTCTTTTTAATCGTAATTGTTTTTGATTTCCCACATTGT-ATATT-ATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACTT-------T----TG---AAATAC-C-----AATAAAATGAATGTCG-TTATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAACAAG-AATTGAGTGAAAA-CGCACTAAAAGATAAC------TACATGTATGTG-AAATATGTTGACGCTGAACTTGACATTTACGTTAATAACATTAA----AAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGGGGATAAGTAACTTAAAATTCCCTAGTCAATTGAT-CT-TAAAAATTATATACATG-TCTATTTTAA---TTTTTAA-A-AAATACAA-----TCTGTG-TA---TTATATAAATAAAAC-AGGTGTCAAATTATACTGTTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACAC-AAAAATA-AGTTAC-TGTTAGGGCTTAATA--GTT-ATATGTATATT-GAGGCGAGTTGTCCTGAGCTGAGAGG---G--GGG-----CG-GTTGTCTTG-GA--G---A--G-G-------GAGC---GAGTTT-----G-TTC----C----TACAGG-----GGATGAG-TGTC
gi|8 : TTATTATTTTAATTTAT--CTAT--ATTCTGTATGGCA---------A-TAAACTAC---TAATTTTAATTG---------TAGTAGGGAGTGTGATAGCTCGGC-TCATTTG-CTGGC-CA------AGTATAA-TTATCAATTC-TTT-------AAttgtggcgagttgtctaggggcggtgttccagtcattc
gi|3 : atAATT-GTTT-------GACT--------TCACCCAAGCTGTTACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCA-CTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATAC-AATTTCTCATATAGA-AATTTCATGTT---TTTTT---CAAGCAA------GAAAAATGCATTAAAAGATAACTACA---A---GTATGTGAA---ATATTC-CAC---GCTTCACATTTACAT-----ACATCA-----CAC---AA-AAAAAAATCT--TGTATTGCTTTTAATCATCTG--CG----------------TATAATT-CCTAGTCAATTGAACCTATAAAAATTA-ATA-----TCCA----AAATTTTACTATTG-AAATACAA-------T-TT-TGTGGTTATATATATAAAACTAAATG----TTTATAGTGTTT--AAAAAGT--GT-TAATT-TTGAAACCA-ACACACAC-TAAAATACATATACA-ACTATA--T--ATA--T
gi|5 : tTGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATCT--TATATTTCTTTTAATCATTTA--CGT-GCAGATAAGTAA-TTATAATT-CCTAGTTAATTGAA-CTATAAAAAATATAAACATGTaaaaaaagggggggggggggggggggggggtaagtggtgacaatatatttgtatattggcgcgagttgtcctgagctgaggggacattgagttgttctggagaaagggtgagttgt
gi|10 : CATTTACGT-GATCACATTAA----CACATAAGGAAAAAAATCTTATAT---------------TTG------GGATATAAGTAATT-ATAAAT-TCTAGTCAATTGAA-CTATAAAAATTATATACA
gi|4 : ATT-CCTAGTCAATTGAA-GTATAAAAATTATATACATGTTCTATTTTGATTTTT---AA---AAATTA--CAA--TCT-GTGTA---TTATATAAATAAAACGAGGTGTC--TTTATACTG--TTAAAAAAGTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTATGATT--ATA--TGTA------ATATTGTGGGCGAGTTCTCCTGAGCTGAG-AG---G--GGG-----CGAGTTGTCTT--AA--G---A--G-G-------GGAT---GAG-TT-----G-TCT----T----T----G-----GGGCGAGTTGTTC
gi|9 : TACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTATAGTT--ATA--TTTA------ATATTGGAGGCGAGTTGCCCG----AAAG-T----G--GGG-----CGAGTTGTCCT--GA--agc
gi|9 : TACAATCACAAAAACAA-ACACACATAAAACATACAGTTACAT------GTT--ATA------GT---TATATTTAA-------TAT------------TG---G--AGG-----CGAGTTGCCCG--AA---------------------------AG-T-------------------------G-----GGGCGAGTTGTCCgctgag
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTATAGTT--ATA--TGTA------ATATTGAAGGCGAGTTGTCCT----GAAG-T----G--GGG-----CGAGTTGTCCT--GAGCTGAGA--A-G-------GGGC---GAG-TT-----C-TCT----T----tgagctgag
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA-------GTT--ATA--TGTAATA------TTGGGGACGAGTTGTCCT----GAGC-TGAGAG--GGG-----TGAGTTGTCTT--GA--G---A--A-G-------GGGC---GAG-TT-----G-TC
gi|12 : acacacacccaccTT--ATAAGTGTGATA-ATATATTGGGGGCGAGTTGTCC-----TGAG-AG---G--GGG-----CGAGTTGACCTG-AA--G---T--G-G-------GGGC---GAG-TT-----G-TCT----T----c
gi|13 : aaatATATA-ATATTTAGGGCGAATTGTC-T----CAAA-AG---ACAGTG-----CGAATTGTCCT--GAGCTGAGA--G-A-------GGAC---GAG-TT-----G-TC
gi|3 : TATATTGGCG-CGAGTTGTCCT----GAGC-TG---A--GGGGACATTGAGTTGTTCTG-GA--G---A--A-A-------GGGT---GAG-TT-----G-Tc
gi|17 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatatttgGGGGATGAGTTGTCTT--------------G--GGG-----CGAGTTGTTTT--A------------G-------GGGC---GAG-TT-----G-TC
gi|14 : gaGGGGCGAGTTGTC-T----GAAG-TA---G--GGG-----CGAGTTGTCTTGAAG--T---A--G-G-------GG-C---GAG-TT-----A-TTT----T----G----A-----GGGCAAGTTGcagcat
gi|11 : GAGGCGAGTTGTCC-----TGAG-AG---G--GAA-----CGAGTTGTCTT-------------G-G-------GGGC---GAG-CTAAATAG-TCT----T----A----A-----GGGCGAGTTGTCC
gi|16 : gctgagaa----TAAG-AA---G--GGA-----TGAGTTGTCGT--A------------G-------GGAC---AAG-TT-----G-TCT----T----A----G-----GGGAGATTTGTCCatat
gi|15 : AG-AG---G--GGG-----CGAGTTGTCCT--AA--T---A--G-GGTATTTTGGGC---GAG-TT-----G-TCT----T----A----G-----GGGCGAGTTTTCCagcattc
gi|7 : tgg-TG---G--GGA-----CGAGTTGTCCT--GAGCTG--A--GAG-------GGGT---GAG-TT-----G-TCT----T----GAGAAG-----GGGCGAGTTGTCCagc
gi|12 : acacacacccacccacacacacccacccacccacacaatacatttacagttatatgtaatat-TG---G--GGG-----CGAGTTGTCCT--GA--G---A--G-G-------GGGC---GAG-TT-----GACCTGAAGT----G----G-----GGGCGAGTTGTC
gi|17 : aaatttataagtgtgataatatatG---G--GGA-----TGAGTTGTCTT---------------G-------GGGC---GAG-TT-----G-TTT----T----A----G-----GGGCGAGTTGTCCtt
gi|3 : ga---G--GCG-----CGAGTTGTCCT--GAGCTG--A--G-G-------GGACATTGAG-TT-----G-TTC----T----G----GAGAAAGGGTGAGTTGTagcat
gi|6 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatatttgtatattT--AA--T---ATTG-A-------AGGC---GAG-TT-----G-TCC----TGAAGT----G-----GGGCGAGTTGTCC
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 2 2 1 222 2 222222 1 222 2 2222 2 1 222222222222 222222 8888888888 444444444444444 1111 11111111111 55555555555 11 2 44444 4444444444444444444444 1 11 2 2222222222222222222 444444 1 22 2 33 111 2 1 6666666 222222 1 1111 1 1111111111 1 11 11 4444444 222222222222222 3 11 11 1 11 22222222 22222222222222222222222222222222222 1111111 333333333333333333333333333333333333333333333333 1111111
lowQualScore : 0 2 0 3 5 000 0 4 999999 5 111 0 2222 4 4 0 5 555555555555 999999 7777777777 222222222222222 7 5555 1 88888888888 0 7 1 7 11111111111 11 0 33 1 3 0 00000 6 7 6666666666666666666666 1 3 55 0 11 0 77 1 3 11 7 1 5555555555555555555 222222 1 4 7 44 3 1 00 777 3 7 5 2222222 7 333333 1 6 0 7777 0 0 8 8 0 88 0 6666666666 8 6 6 6 00 0 33 0000000 999999999999999 0 3 33 0 33 3 0 33 0 0 5 1 5 0 1 00000000 66 99999999999999999999999999999999999 3 1 1111111 444 444 2 66666 2 777777777777777777777777777777777777777777777777 77777 7777777 9999
lowQualScore : . . . . . ... . . ...... . ... . .... . . . . ............ ...... .......... ............... . .... . ........... . . . . ........... .. . .. . . . ..... . . ...................... . . .. . .. . .. . . .. . . ................... ...... . . . .. . . .. ... . . . ....... . ...... . . . .... . . . . . .. . .......... . . . . .. . .. ....... ............... . . .. . .. . . .. . . . . . . . ........ .. ................................... . . ....... ... ... . ..... . ................................................ ..... ....... ....
lowQualScore : 0 5 0 0 5 555 0 0 555555 0 555 0 0000 0 0 0 5 000000000000 555555 5555555555 333333333333333 3 7777 0 77777777777 7 3 0 3 33333333333 77 7 33 0 7 7 77777 7 3 5555555555555555555555 0 3 77 7 77 7 77 0 7 33 3 0 3333333333333333333 000000 0 0 3 00 3 0 33 777 3 3 3 0000000 3 777777 0 7 6 0000 8 8 2 0 6 88 6 6666666666 2 7 7 7 11 8 88 5555555 000000000000000 0 2 88 2 22 2 0 88 8 9 7 7 0 7 4 77777777 99 77777777777777777777777777777777777 3 0 1111111 111 777 7 77777 7 444444444444444444444444444444444444444444444444 11111 2222222 4444
consensus : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT----TAT-ATTTT-ATTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGC--ACTGT--AGTAGTAGGGAGTGTATTGGCTCGGCCTCATTTG-CTAGCGTAT-TATTAGTATGAATTATCAATTCTTT--------AATTGTTTT-GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACTT-------T----TG---AAATACTC----CAATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT--TTTTCC-ACAAG-AATTGAGTGAAAA-CGCACTAAAAGATAACTACAT--A---GTATGTGAAA-TATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA--TTTT-TA--AAAAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-GAG-----A-G--------------GG-------G--------------GCGAGTT-----GTCTTA------GGGG----CGAGTTGTCC
Reference ( family-1927 ) : NATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATGT----TATTATTTTAATTTACATNTATATATTCTGTNTGGCATTTGA-TCAAATAAACTACATGTANTTTTAGCNGACTGTCTAGTAGTAGGGAGTGTGNTGGCTCGGCCTCANTTGTCTGGCGCAT-TATTAGTATGAATTATCAATTCTTT--------AACTGTTTTTGA--TCNCCCACGCTGT-TACGTTTACTCNAGACGNTANGGTTACTCCTCATTACGCATGTAGACTCNGTTCACCTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAANGAANGTCGTTTATACCGATTTCTCATATAGAGAATTTCATGNTTGATTTTTCAACAAGCAATTGAGTGAAAAACGCACTAAAAGATAACTACAT--ACATGTATGTGAAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTG--CGTGGAG-ATAAGTAACTTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA--TTTTCTA--AGAAATACAA-----TCT-T-T-TATTATATAAATAAAAC-AGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAAAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTNA----A--GNG-GGGGC---GAGTT-GTC-----CT-GAN-----A-G--------------GG-------G--------------GCGAGTT-----GTCTTG------GGGG----CGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG---------------ATT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTT-AGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT-T-TATTAGTATGAATTATCAATTCTTTTTAATCGTAATTGTTTTTGA--TTTCCCACATTGTATA---TTATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACTT-------T----TG---AAATAC------CAATAAAATGAATGTCGTT-ATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAACAAG-AATTGAGTGAAAA-CGCACTAAAAGATAACTACAT------GTATGTGAAA-TATGTTGACGCTGAACTTGACATTTACGTTAATAACA----TTAAAAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGGGGATAAGTAACTTAAAATTCCCTAGTCAATTGAT-CT-TAAAAATT-ATATACATGT-CTATTTTAA--TTTT-TA--AAAAATACAA-----TCT-G-TGTATTATATAAATAAAAC-AGGTGTCAAATTATACTG-TTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACACAAAAA-TA-AGTTAC-TGTTAGGGCTTAATAGTTATA--TGTA-T--A-TT-GAGGCGAGTTGTCCTGAGCTGAGAGGGGGGCG-GTTGTC-TTGG----A--GAG-GGAGC---GAGTTTGTT-----CC-TAC-----A-G--------------GG-------GATGAGTGTCTTGTGGCGAGTT-----GTC-TA------GGGG----CG
gi|10 : CATTTACGT-GATCACA----TTAACACATAAGGAAAAAAATCTT--------------AT-ATTTG-----GGAT-ATAAGTAA-TTATAAATTC-TAGTCAATTGAA-CTATAAAAATT-ATATACAgtgttccagtcattc
gi|11 : ---------------GAGGCGAGTTGTC-CTGA-------GAG-GGAAC---GAGTT-GTC-----TT-G------------------------GG-------G--------------GCGAGCTAAATAGTCTTA------AGGG----CGAGTTGTCC
gi|12 : gctgagaaTTATAAGTGTGAT--AATA-TA------TTG---------------GGGGCGAGTTGTC-CTG-----A--GAG-GGGGC---GAGTT-GAC-----CT-GAA-----GTG--------------GG-------G--------------GCGAGTT-----GTCTTatat
gi|13 : aaatAT--A-TAATA------TTT---------------AGGGCGAATTGTCTCAAA----A--GAC-AGTGC---GAATT-GTC-----CT-GAGCTGAGA-G--------------AG-------G--------------ACGAGTT-----GTC
gi|14 : ---------------GGGGCGAGTTGT--CTGA----A--GTA-GGGGC---GAGTT-GTC-----TT-GA------A-GTA------------GG-------G--------------GCGAGTT-----ATTTTG------AGGG----CAAGTTGc
gi|15 : TGG----A--GAG-GGGGC---GAGTT-GTC-----CT-AAT-----A-G--------------GGTATTTTGG--------------GCGAGTT-----GTCTTA------GGGG----CGAGTTTTCC
gi|16 : A----A--GAA-GGGAT---GAGTT-GTC-----GT-A------------------------GG-------G--------------ACAAGTT-----GTCTTA------GGGG----AGATTTGTCCagc
gi|17 : t--GAG-GGGAT---GAGTT-GTC-----TT-G-------------------------G-------G--------------GCGAGTT-----GTTTTA------GGGG----CGAGTTGTCCagcattc
gi|2 : ATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTATAATTTTCATTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGC---------AGTTGTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTT-----------TGATTT------CTCCCACGCTGT-TATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCATTT------------TG---AAATACTC-----AATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGATT---TTTCCCACAAG-AATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTGAA----TATTTACACTGAACTTGACATTTACATTAATCACA----TTACCACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA--CGTGGAG-ATAAGTAATTTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-T-T-T-TTATACAAATAAAACGAGGTGTCT--TTATATTGTTTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TCTAATACA-TA-TA------TTG---------------GAGGCGAGTTGTC-CTTA----A--GTG-GGGGC---GAGTT-GTC-----CT-AAT-----A-G--------------GG-------G--------------ACGAGTT-----GTCTTT------GGGG----TGAGTTGTCCagcat
gi|3 : tT--------AATTGTTT--GACTTCACCCAAGCTGT-TACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCAC-TGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATA-CAATTTCTCATATAGA-AATTTCATGTTT--TTTT----CAAGCAA------GAAAAATGCATTAAAAGATAACTACA---A---GTATGTG-AAATAT-TCCACG-----CTTCACATTTACAT-----ACA----TC-ACAC---AA-AAAAAAATC-T-TGTATTGCTTTTAATCATCTG--CG----------------TATAATTCC-TAGTCAATTGAACCTATAAAAATTAATATCCAAA----ATTTTAC--TATT------GAAATACAA-----TTT-TGT-GGTTATATATATAAAACTAAATG--T--TTATAGTG-TTT-AAAAA-GT--GT-TAATT-TTGAAACCA-ACACACACTAAAA-------TACATA-TA--------CAACTATA--TAT-AT--A-AA-AA------AAG---------------GGGGGGGGGGG----GGG----G--GGG-GGGGT---AAGTG-G--------T-GAC-----A-ATATATTTGTATATTGG-------C--------------GCGAGTT-----GTCCTGAGCTGAGGGGACATTGAGTTGTTC
gi|3 : T--G-TA-TA------TTG---------------GCG-CGAGTTGTC-CTGA----GCTGAG-GGGACATTGAGTT-GTT-----CTGGAG-----A-A--------------AG-------G--------------GTGAGTT-----GTtggagaaagggtgagttgt
gi|4 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatattATTCC-TAGTCAATTGAA-GTATAAAAATT-ATATACATGTTCTATTTTGA--TTTT-TA--AAAATTACAA-----TCTGT-G-TATTATATAAATAAAACGAGGTGTCT--TTATACTG--TTAAAAAA-GTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTA--------TGATTATA--TGTA-------A-TA------TTG---------------TGGGCGAGTTCTC-CTGAGCTGA--GAG-GGGGC---GAGTT-GTC-----TT-AAG-----A-G--------------GG-------G--------------ATGAGTT-----GTCTTT------GGGG----CGAGTTGTTC
gi|5 : TGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATC-T-TATATTTCTTTTAATCATTTA--CGTGCAG-ATAAGTAA-TTATAATTCC-TAGTTAATTGAA-CTATAAAAAAT-ATAAACATGTagc
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTA--------TAGTTATA--TGTA-------A-TA------TTG---------------AAGGCGAGTTGTC-CTGA----A--GT--GGGGC---GAGTT-GTCCTGAGCT-GAG-----A-A--------------GG-------G--------------GCGAGTT-----CTCTT
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA---------------GTTATA--TGTAAT--A-T-----------TG---------------GGGACGAGTTGTC-CTGA----GCTGAGAGGGGT---GAGTT-GTC-----TT-GAG-----A-A--------------GG-------G--------------GCGAGTT-----GTC
gi|8 : acacacacccaccT----TATTATTTTAATTTA----TCTATATTCTGTATGGCA----------ATAAACTAC---TAATTTTA----ATTGT-----AGTAGGGAGTGTGATAGCTCGG-CTCATTTG-CTGGC-CA------AGTAT-AATTATCAATTCTTT--------AAc
gi|9 : atTACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTA--------TAGTTATA--TTTA-------A-TA------TTG---------------GAGGCGAGTTGCC-CGAA----A--GT--GGGGC---GAGTT-GTC-----CT-GA
Alignments
lowQualScore : 1 1 1 222 1 222222 1 222 1 1 1 1 1 1 22222222 222222 4444444444 88888888888888888888888888 11111111111 444444444444 11 1 33333 1 5555555555555555555555 1 11 1 55555555555555555 555555 2 11 1 222 1 1 5555555 1 1 1111 1 11 111111 1 11 111 111 222222222222222 11 11 1 11 22222222 22222222222222222222222222222222222 11111111111111111111111111111111111111
lowQualScore : 5 1 5 1 5 000 5 1 999999 5 111 5 5 5 1 1 5 5 5 44444444 999999 0000000000 55555555555555555555555555 88888888888 7 7 6 999999999999 0 33 3 66666 6 7 3 2222222222222222222222 3 55 6 3 7 6 88888888888888888 000000 6 7 44 3 333 6 3 7 3 3333333 7 2 1 6 0 7777 0 0 8 8 0 88 1 11 222222 6 6 6 6 00 0 777 3 444 999999999999999 8 3 33 0 33 3 0 33 0 0 5 1 5 0 1 00000000 66 99999999999999999999999999999999999 3 88888888 2 444 2 66666 77777777777777777777777777777777777777 6666 77777 3 1
lowQualScore : . . . . . ... . . ...... . ... . . . . . . . . ........ ...... .......... .......................... ........... . . . ............ . .. . ..... . . . ...................... . .. . . . . ................. ...... . . .. . ... . . . . ....... . . . . . .... . . . . . .. . .. ...... . . . . .. . ... . ... ............... . . .. . .. . . .. . . . . . . . ........ .. ................................... . ........ . ... . ..... ...................................... .... ..... . .
lowQualScore : 5 0 5 0 5 555 5 0 555555 0 555 5 5 5 0 0 5 5 5 55555555 555555 5555555555 77777777777777777777777777 77777777777 3 3 7 000000000000 7 33 3 00000 7 3 3 0000000000000000000000 3 77 7 3 3 7 00000000000000000 777777 7 3 00 3 333 7 3 3 3 0000000 3 0 0 7 6 0000 8 8 2 0 6 88 0 00 444444 0 7 7 7 11 8 555 2 888 000000000000000 8 2 88 2 22 2 0 88 8 4 7 7 0 7 4 77777777 99 77777777777777777777777777777777777 3 88888888 7 777 7 77777 55555555555555555555555555555555555555 1111 11111 6 3
consensus : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT----TAT-A--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGCCTCATTTG-CTAGCGTAT-TATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACT-----CAATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
Reference ( family-1927 ) : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT----TAT-A--TTTTA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGTAGTAGGGAGTGTATTGGCTCGGCCTCATTTG-CTAGCGTAT-TATTAGTATGAATTATCAATTC-TTT--------AATTGTTTT-GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC----CAATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCCA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATA-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG----------------A-TT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTT-AGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT-T-TATTAGTATGAATTATCAATTC-TTTTTAATCGTAATTGTTTTTGA--TTTCCCACATTGTATA---TTATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACT------TT----TG---AAATAC------CAATAAAATGAATGTCGTT-ATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACAT------GTATGTGAAATATGTTGACGCTGAACTTGACATTTACGTTAATAACA----TTAAAAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGGGGATAAGTAACTTAAAATTCCCTAGTCAATTGAT-CT-TAAAAATT-ATATACATGT-CTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-G-TGTATTATATAAATAAAAC-AGGTGTCAAATTATACTG-TTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACACAAAAA-TA-AGTTAC-TGTTAGGGCTTAATAGTTATA--TGTA-T--A-TT-GAGGCGAGTTGTCCTGAGCTGAGAGGGGGGCG-GTTGTC-TTGG----A--GAG-GGAGC---GAGTTTGTT-----CC-T-AC-----AG--GG-------GATGAGTGTCTTGTGGCG----AGTT-----GTC--TAGGGGCG
gi|10 : CATTTACGT-GATCACA----TTAACACATAAGGAAAAAAATCTT--ATATTT-----------------G-GGAT-ATAAGTAA-TTATAAATTC-TAGTCAATTGAA-CTATAAAAATT-ATATACAgtgttccagtcattc
gi|11 : ---------------GAGGCGAGTTGTC-CTG-----A--GAG-GGAAC---GAGTT-GTC-----TT-----------G--GG-------G--------------GCG----AGCTAAATAGTCT-TAAGGGCGAGTTGTCC
gi|12 : gctgagaaTTATAAGTGTGAT--AATA-TA------TTG---------------GGGGCGAGTTGTC-CTG-----A--GAG-GGGGC---GAGTT-GAC-----CT-GAAG-----TG--GG-------G--------------GCG----AGTT-----GTCT-Tatat
gi|13 : aaatAT--A-TAATA------TTT---------------AGGGCGAATTGTCTCAAA----A--GAC-AGTGC---GAATT-GTC-----CT-G-AGCTGAGAG--AG-------G--------------ACG----AGTT-----GTC
gi|14 : ---------------GGGGCGAGTTGT--CTGA----A--GTA-GGGGC---GAGTT-GTC-----TT-G-A------AGTAGG-------G--------------GCG----AGTT-----ATTT-TGAGGGCAAGTTGc
gi|15 : TGG----A--GAG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GGTATTTTGG--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTTTCC
gi|16 : A----A--GAA-GGGAT---GAGTT-GTC-----GT-A------------GG-------G--------------ACA----AGTT-----GTCT-TAGGGGAGATTTGTCCagc
gi|17 : t--GAG-GGGAT---GAGTT-GTC-----TT-G-------------G-------G--------------GCG----AGTT-----GTTT-TAGGGGCGAGTTGTCCagcattc
gi|2 : ATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTAT-AATTTTCA-TTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGCA---------GTTGTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTTT--------GATT----------TCTCCCACGCTGT-TATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCA-T------TT----TG---AAATACT-----CAATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGATT---TTTCCCA-CAAGAATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTGA---ATATTTACACTGAACTTGACATTTACATTAATCACA----TTACCACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA--CGTGGAG-ATAAGTAATTTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-T-T-T-TTATACAAATAAAACGAGGTGTCT--TTATATTGTTTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TCTAATACA-TA-TA------TTG---------------GAGGCGAGTTGTC-CTTA----A--GTG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GG-------G--------------ACG----AGTT-----GTCT-TTGGGGTGAGTTGTCCagcat
gi|3 : tT--------AATTGTTT--GACTTCACCCAAGCTGT-TACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCACTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATA-CAATTTCTCATATAGA-AATTTCATGTTT---TTTTCAAGCAAGA--------AAAA-TGCATTAAAAGATAACTACA-A-----GTATGTGAAATAT-TCCACG-----CTTCACATTTACAT-----ACA----TC-ACAC---AA-AAAAAAATC-T-TGTATTGCTTTTAATCATCTG--CG----------------TATAATTCC-TAGTCAATTGAACCTATAAAAATTAATATCCAAA----ATTTTAC---TATT----G-AAATACAA-----TTT-TGT-GGTTATATATATAAAACTAAATG--T--TTATAGTG-TTT-AAAAA-GT--GT-TAATT-TTGAAACCA-ACACACACTAAAA-------TACATA-TA--------CAACTATA--TAT-AT--A-AA-AA------AAG---------------GGGGGGGG--------GG----G--GGG-GGGGG---GGG------------T-A-AG-----TG--GT-------G--------------ACAATATATTT-----GTATATTGGCGCGAGTTGTCC
gi|3 : T--G-TA-TA------TTG---------------GCG-CGAGTTGTC-CTGA----GCTGAG-GGGACATTGAGTT-GTT-----CTGG-AG-----AA--AG-------G--------------GTG----AGTT-----GTtgagctgaggggacattgagttgttctggagaaagggtgagttgt
gi|4 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatattATTCC-TAGTCAATTGAA-GTATAAAAATT-ATATACATGTTCTATTTTGA---TTTTTAA-A-AATTACAA-----TCTGT-G-TATTATATAAATAAAACGAGGTGTCT--TTATACTG--TTAAAAAA-GTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTA--------TGATTATA--TGTA-------A-TA------TTG---------------TGGGCGAGTTCTC-CTGAGCTGA--GAG-GGGGC---GAGTT-GTC-----TT-A-AG-----AG--GG-------G--------------ATG----AGTT-----GTCT-TTGGGGCGAGTTGTTC
gi|5 : TGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATC-T-TATATTTCTTTTAATCATTTA--CGTGCAG-ATAAGTAA-TTATAATTCC-TAGTTAATTGAA-CTATAAAAAAT-ATAAACATGTagc
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTA--------TAGTTATA--TGTA-------A-TA------TTG---------------AAGGCGAGTTGTC-CTGA----A--G-T-GGGGC---GAGTT-GTCCTGAGCT-G-AG-----AA--GG-------G--------------GCG----AGTT-----CTCT-T
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA---------------GTTATA--TGTAAT--A-T-----------TG---------------GGGACGAGTTGTC-CTGA----GCTGAGAGGGGT---GAGTT-GTC-----TT-G-AG-----AA--GG-------G--------------GCG----AGTT-----GTC
gi|8 : acacacacccaccT----TATTA--TTTTAATTTA----TCTATATTCTGTATGGCA----------ATAAACTAC---TAATTTTA--A--TTGT--AG---TAGGGAGTGTGATAGCTCGG-CTCATTTG-CTGGC-CA------AGTAT-AATTATCAATTC-TTT--------AAc
gi|9 : atTACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTA--------TAGTTATA--TTTA-------A-TA------TTG---------------GAGGCGAGTTG-C-CCGA----A--AGT-GGGGC---GAGTT-GTC-----CT-G-AG-----
Alignments
lowQualScore : 1 1 1 222 1 222222 1 222 1 1 1 1 1 1 22222222 222222 4444444444 777777777777777777777777 11111111111 4444444444444 2 1 33333 1 4444444444444444444444 1 11 1 55555555555555555 33333 2 11 1 222 1 1 44444444 1 1 1111 1 11 111111 1 11 111 111 222222222222222 11 11 1 11 22222222 22222222222222222222222222222222222 11111111111111111111111111111111111111
lowQualScore : 5 1 5 1 5 000 5 1 999999 5 111 5 5 5 1 1 5 5 5 44444444 999999 0000000000 888888888888888888888888 88888888888 7 7 6 5555555555555 0 3 3 88888 7 6 7 3 1111111111111111111111 3 55 6 3 7 6 88888888888888888 7 33333 6 7 44 3 333 3 7 3 22222222 7 2 1 6 0 7777 0 0 8 8 0 88 1 11 222222 6 6 6 6 00 0 777 3 444 999999999999999 8 3 33 0 33 3 0 33 0 0 5 1 5 0 1 00000000 66 99999999999999999999999999999999999 3 88888888 2 444 2 66666 77777777777777777777777777777777777777 6666 77777 3 1
lowQualScore : . . . . . ... . . ...... . ... . . . . . . . . ........ ...... .......... ........................ ........... . . . ............. . . . ..... . . . . ...................... . .. . . . . ................. . ..... . . .. . ... . . . ........ . . . . . .... . . . . . .. . .. ...... . . . . .. . ... . ... ............... . . .. . .. . . .. . . . . . . . ........ .. ................................... . ........ . ... . ..... ...................................... .... ..... . .
lowQualScore : 5 0 5 0 5 555 5 0 555555 0 555 5 5 5 0 0 5 5 5 55555555 555555 5555555555 000000000000000000000000 77777777777 3 3 7 3333333333333 7 3 3 77777 3 7 3 3 7777777777777777777777 3 77 7 3 3 7 00000000000000000 3 33333 7 3 00 3 333 3 3 3 77777777 3 0 0 7 6 0000 8 8 2 0 6 88 0 00 444444 0 7 7 7 11 8 555 2 888 000000000000000 8 2 88 2 22 2 0 88 8 4 7 7 0 7 4 77777777 99 77777777777777777777777777777777777 3 88888888 7 777 7 77777 55555555555555555555555555555555555555 1111 11111 6 3
consensus : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT----TAT---TTT-ATTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT-T-TATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
Reference ( family-1927 ) : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT----TATA--TTTCATTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGCCTCATTTG-CTAGCGTAT-TATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG---------------ATT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTT-AGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT-T-TATTAGTATGAATTATCAATTC-TTTTTAATCGTAATTGTTTTTGA--TTTCCCACATTGTATA---TTATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACT------TT----TG---AAATAC-C-----AATAAAATGAATGTCGTT-ATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG------TATGTGAAATATGTTGACGCTGAACTTGACATTTACGTTAATAACA----TTAAAAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGGGGATAAGTAACTTAAAATTCCCTAGTCAATTGAT-CT-TAAAAATT-ATATACATGT-CTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-G-TGTATTATATAAATAAAAC-AGGTGTCAAATTATACTG-TTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACACAAAAA-TA-AGTTAC-TGTTAGGGCTTAATAGTTATA--TGTA-T--A-TT-GAGGCGAGTTGTCCTGAGCTGAGAGGGGGGCG-GTTGTC-TTGG----A--GAG-GGAGC---GAGTTTGTT-----CC-T-AC-----AG--GG-------GATGAGTGTCTTGTGGCG----AGTT-----GTC--TAGGGGCG
gi|10 : CATTTACGT-GATCACA----TTAACACATAAGGAAAAAAATCTT--ATATTT-----------------G-GGAT-ATAAGTAA-TTATAAATTC-TAGTCAATTGAA-CTATAAAAATT-ATATACAgtgttccagtcattc
gi|11 : ---------------GAGGCGAGTTGTC-CTG-----A--GAG-GGAAC---GAGTT-GTC-----TT-----------G--GG-------G--------------GCG----AGCTAAATAGTCT-TAAGGGCGAGTTGTCC
gi|12 : gctgagaaTTATAAGTGTGAT--AATA-TA------TTG---------------GGGGCGAGTTGTC-CTG-----A--GAG-GGGGC---GAGTT-GAC-----CT-GAAG-----TG--GG-------G--------------GCG----AGTT-----GTCT-Tatat
gi|13 : aaatAT--A-TAATA------TTT---------------AGGGCGAATTGTCTCAAA----A--GAC-AGTGC---GAATT-GTC-----CT-G-AGCTGAGAG--AG-------G--------------ACG----AGTT-----GTC
gi|14 : ---------------GGGGCGAGTTGT--CTGA----A--GTA-GGGGC---GAGTT-GTC-----TT-G-A------AGTAGG-------G--------------GCG----AGTT-----ATTT-TGAGGGCAAGTTGc
gi|15 : TGG----A--GAG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GGTATTTTGG--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTTTCC
gi|16 : A----A--GAA-GGGAT---GAGTT-GTC-----GT-A------------GG-------G--------------ACA----AGTT-----GTCT-TAGGGGAGATTTGTCCagc
gi|17 : t--GAG-GGGAT---GAGTT-GTC-----TT-G-------------G-------G--------------GCG----AGTT-----GTTT-TAGGGGCGAGTTGTCCagcattc
gi|2 : ATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTATAATTTTCATTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGCA----GT----T-GTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTTT--------GATT----------TCTCCCACGCTGT-TATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCA-T------TT----TG---AAATACTC-----AATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGATT---TTTCCCA-CAAGAATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTGA---ATATTTACACTGAACTTGACATTTACATTAATCACA----TTACCACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA--CGTGGAG-ATAAGTAATTTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-T-T-T-TTATACAAATAAAACGAGGTGTCT--TTATATTGTTTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TCTAATACA-TA-TA------TTG---------------GAGGCGAGTTGTC-CTTA----A--GTG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GG-------G--------------ACG----AGTT-----GTCT-TTGGGGTGAGTTGTCCagcat
gi|3 : tT--------AATTGTTT--GACTTCACCCAAGCTGT-TACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCACTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATA-CAATTTCTCATATAGA-AATTTCATGTTT---TTTTCAAGCAAGA--------AAAA-TGCATTAAAAGATAACTACA-A-----GTATGTGAAATAT-TCCACG-----CTTCACATTTACAT-----ACA----TC-ACAC---AA-AAAAAAATC-T-TGTATTGCTTTTAATCATCTG--CG----------------TATAATTCC-TAGTCAATTGAACCTATAAAAATTAATATCCAAA----ATTTTAC---TATT----G-AAATACAA-----TTT-TGT-GGTTATATATATAAAACTAAATG--T--TTATAGTG-TTT-AAAAA-GT--GT-TAATT-TTGAAACCA-ACACACACTAAAA-------TACATA-TA--------CAACTATA--TAT-AT--A-AA-AA------AAG---------------GGGGGGGG--------GG----G--GGG-GGGGG---GGG------------T-A-AG-----TG--GT-------G--------------ACAATATATTT-----GTATATTGGCGCGAGTTGTCC
gi|3 : T--G-TA-TA------TTG---------------GCG-CGAGTTGTC-CTGA----GCTGAG-GGGACATTGAGTT-GTT-----CTGG-AG-----AA--AG-------G--------------GTG----AGTT-----GTtgagctgaggggacattgagttgttctggagaaagggtgagttgt
gi|4 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatattATTCC-TAGTCAATTGAA-GTATAAAAATT-ATATACATGTTCTATTTTGA---TTTTTAA-A-AATTACAA-----TCTGT-G-TATTATATAAATAAAACGAGGTGTCT--TTATACTG--TTAAAAAA-GTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTA--------TGATTATA--TGTA-------A-TA------TTG---------------TGGGCGAGTTCTC-CTGAGCTGA--GAG-GGGGC---GAGTT-GTC-----TT-A-AG-----AG--GG-------G--------------ATG----AGTT-----GTCT-TTGGGGCGAGTTGTTC
gi|5 : TGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATC-T-TATATTTCTTTTAATCATTTA--CGTGCAG-ATAAGTAA-TTATAATTCC-TAGTTAATTGAA-CTATAAAAAAT-ATAAACATGTagc
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTA--------TAGTTATA--TGTA-------A-TA------TTG---------------AAGGCGAGTTGTC-CTGA----A--G-T-GGGGC---GAGTT-GTCCTGAGCT-G-AG-----AA--GG-------G--------------GCG----AGTT-----CTCT-T
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA---------------GTTATA--TGTAAT--A-T-----------TG---------------GGGACGAGTTGTC-CTGA----GCTGAGAGGGGT---GAGTT-GTC-----TT-G-AG-----AA--GG-------G--------------GCG----AGTT-----GTC
gi|8 : acacacacccaccTAT----TAT---TTTAATTTA----TCTATATTCTGTATGGCA----------ATAAACTAC---TAATTTTA--A--TTGT--AGT---AGGGAGTGTGATAGCTCGGC-TCATTTG-CTGGC-----CA--AGTAT-AATTATCAATTC-TTT--------AAc
gi|9 : attTACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTA--------TAGTTATA--TTTA-------A-TA------TTG---------------GAGGCGAGTTG-C-CCGA----A--AGT-GGGGC---GAGTT-GTC-----CT-G-AG-----
Alignments
lowQualScore : 1 1 1 222 1 222222 1 222 1 1 1 1 1 1 22222222 222222 4444444444 8888888888888888888888888 11111111111 4444444444444 1 1 33333 1 4444444444444444444444 1 11 1 55555555555555555 33333 2 11 1 222 1 1 44444444 1 1 1111 1 11 111111 1 11 111 111 222222222222222 11 11 1 11 22222222 22222222222222222222222222222222222 11111111111111111111111111111111111111
lowQualScore : 5 1 5 1 5 000 5 1 999999 5 111 5 5 5 1 1 5 5 5 44444444 999999 0000000000 4444444444444444444444444 88888888888 7 7 6 5555555555555 0 3 3 33333 7 6 7 3 1111111111111111111111 3 55 6 3 7 6 88888888888888888 7 33333 6 7 44 3 333 3 7 3 22222222 7 2 1 6 0 7777 0 0 8 8 0 88 1 11 222222 6 6 6 6 00 0 777 3 444 999999999999999 8 3 33 0 33 3 0 33 0 0 5 1 5 0 1 00000000 66 99999999999999999999999999999999999 3 88888888 2 444 2 66666 77777777777777777777777777777777777777 6666 77777 3 1
lowQualScore : . . . . . ... . . ...... . ... . . . . . . . . ........ ...... .......... ......................... ........... . . . ............. . . . ..... . . . . ...................... . .. . . . . ................. . ..... . . .. . ... . . . ........ . . . . . .... . . . . . .. . .. ...... . . . . .. . ... . ... ............... . . .. . .. . . .. . . . . . . . ........ .. ................................... . ........ . ... . ..... ...................................... .... ..... . .
lowQualScore : 5 0 5 0 5 555 5 0 555555 0 555 5 5 5 0 0 5 5 5 55555555 555555 5555555555 3333333333333333333333333 77777777777 3 3 7 3333333333333 7 3 3 33333 3 7 3 3 7777777777777777777777 3 77 7 3 3 7 00000000000000000 3 33333 7 3 00 3 333 3 3 3 77777777 3 0 0 7 6 0000 8 8 2 0 6 88 0 00 444444 0 7 7 7 11 8 555 2 888 000000000000000 8 2 88 2 22 2 0 88 8 4 7 7 0 7 4 77777777 99 77777777777777777777777777777777777 3 88888888 7 777 7 77777 55555555555555555555555555555555555555 1111 11111 6 3
consensus : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
Reference ( family-1927 ) : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTTA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--TTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG---------------A-TT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTT-AGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT--TTATTAGTATGAATTATCAATTC-TTTTTAATCGTAATTGTTTTTGA--TTTCCCACATTGTATA---TTATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACT------TT----TG---AAATAC-C-----AATAAAATGAATGTCGTT-ATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG------TATGTGAAATATGTTGACGCTGAACTTGACATTTACGTTAATAACA----TTAAAAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGGGGATAAGTAACTTAAAATTCCCTAGTCAATTGAT-CT-TAAAAATT-ATATACATGT-CTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-G-TGTATTATATAAATAAAAC-AGGTGTCAAATTATACTG-TTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACACAAAAA-TA-AGTTAC-TGTTAGGGCTTAATAGTTATA--TGTA-T--A-TT-GAGGCGAGTTGTCCTGAGCTGAGAGGGGGGCG-GTTGTC-TTGG----A--GAG-GGAGC---GAGTTTGTT-----CC-T-AC-----AG--GG-------GATGAGTGTCTTGTGGCG----AGTT-----GTC--TAGGGGCG
gi|10 : CATTTACGT-GATCACA----TTAACACATAAGGAAAAAAATCTT--ATATTT-----------------G-GGAT-ATAAGTAA-TTATAAATTC-TAGTCAATTGAA-CTATAAAAATT-ATATACAgtgttccagtcattc
gi|11 : ---------------GAGGCGAGTTGTC-CTG-----A--GAG-GGAAC---GAGTT-GTC-----TT-----------G--GG-------G--------------GCG----AGCTAAATAGTCT-TAAGGGCGAGTTGTCC
gi|12 : gctgagaaTTATAAGTGTGAT--AATA-TA------TTG---------------GGGGCGAGTTGTC-CTG-----A--GAG-GGGGC---GAGTT-GAC-----CT-GAAG-----TG--GG-------G--------------GCG----AGTT-----GTCT-Tatat
gi|13 : aaatAT--A-TAATA------TTT---------------AGGGCGAATTGTCTCAAA----A--GAC-AGTGC---GAATT-GTC-----CT-G-AGCTGAGAG--AG-------G--------------ACG----AGTT-----GTC
gi|14 : ---------------GGGGCGAGTTGT--CTGA----A--GTA-GGGGC---GAGTT-GTC-----TT-G-A------AGTAGG-------G--------------GCG----AGTT-----ATTT-TGAGGGCAAGTTGc
gi|15 : TGG----A--GAG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GGTATTTTGG--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTTTCC
gi|16 : A----A--GAA-GGGAT---GAGTT-GTC-----GT-A------------GG-------G--------------ACA----AGTT-----GTCT-TAGGGGAGATTTGTCCagc
gi|17 : t--GAG-GGGAT---GAGTT-GTC-----TT-G-------------G-------G--------------GCG----AGTT-----GTTT-TAGGGGCGAGTTGTCCagcattc
gi|2 : ATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTATAATTTTCA-TTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGCA----GT----T-GTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTTT--------GATT----------TCTCCCACGCTGT-TATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCA-T------TT----TG---AAATACTC-----AATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGATT---TTTCCCA-CAAGAATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTGA---ATATTTACACTGAACTTGACATTTACATTAATCACA----TTACCACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA--CGTGGAG-ATAAGTAATTTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-T-T-T-TTATACAAATAAAACGAGGTGTCT--TTATATTGTTTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TCTAATACA-TA-TA------TTG---------------GAGGCGAGTTGTC-CTTA----A--GTG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GG-------G--------------ACG----AGTT-----GTCT-TTGGGGTGAGTTGTCCagcat
gi|3 : tT--------AATTGTTT--GACTTCACCCAAGCTGT-TACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCACTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATA-CAATTTCTCATATAGA-AATTTCATGTTT---TTTTCAAGCAAGA--------AAAA-TGCATTAAAAGATAACTACA-A-----GTATGTGAAATAT-TCCACG-----CTTCACATTTACAT-----ACA----TC-ACAC---AA-AAAAAAATC-T-TGTATTGCTTTTAATCATCTG--CG----------------TATAATTCC-TAGTCAATTGAACCTATAAAAATTAATATCCAAA----ATTTTAC---TATT----G-AAATACAA-----TTT-TGT-GGTTATATATATAAAACTAAATG--T--TTATAGTG-TTT-AAAAA-GT--GT-TAATT-TTGAAACCA-ACACACACTAAAA-------TACATA-TA--------CAACTATA--TAT-AT--A-AA-AA------AAG---------------GGGGGGGG--------GG----G--GGG-GGGGG---GGG------------T-A-AG-----TG--GT-------G--------------ACAATATATTT-----GTATATTGGCGCGAGTTGTCC
gi|3 : T--G-TA-TA------TTG---------------GCG-CGAGTTGTC-CTGA----GCTGAG-GGGACATTGAGTT-GTT-----CTGG-AG-----AA--AG-------G--------------GTG----AGTT-----GTtgagctgaggggacattgagttgttctggagaaagggtgagttgt
gi|4 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatattATTCC-TAGTCAATTGAA-GTATAAAAATT-ATATACATGTTCTATTTTGA---TTTTTAA-A-AATTACAA-----TCTGT-G-TATTATATAAATAAAACGAGGTGTCT--TTATACTG--TTAAAAAA-GTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTA--------TGATTATA--TGTA-------A-TA------TTG---------------TGGGCGAGTTCTC-CTGAGCTGA--GAG-GGGGC---GAGTT-GTC-----TT-A-AG-----AG--GG-------G--------------ATG----AGTT-----GTCT-TTGGGGCGAGTTGTTC
gi|5 : TGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATC-T-TATATTTCTTTTAATCATTTA--CGTGCAG-ATAAGTAA-TTATAATTCC-TAGTTAATTGAA-CTATAAAAAAT-ATAAACATGTagc
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTA--------TAGTTATA--TGTA-------A-TA------TTG---------------AAGGCGAGTTGTC-CTGA----A--G-T-GGGGC---GAGTT-GTCCTGAGCT-G-AG-----AA--GG-------G--------------GCG----AGTT-----CTCT-T
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA---------------GTTATA--TGTAAT--A-T-----------TG---------------GGGACGAGTTGTC-CTGA----GCTGAGAGGGGT---GAGTT-GTC-----TT-G-AG-----AA--GG-------G--------------GCG----AGTT-----GTC
gi|8 : acacacacccaccTAT------TA--TTTTAATTTA----TCTATATTCTGTATGGCA----------ATAAACTAC---TAATTTTA--A--TTGT--AGT---AGGGAGTGTGATAGCTCGGC-TCATTTG-CTGGC-----CA--AGTAT-AATTATCAATTC-TTT--------AAc
gi|9 : attTACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTA--------TAGTTATA--TTTA-------A-TA------TTG---------------GAGGCGAGTTG-C-CCGA----A--AGT-GGGGC---GAGTT-GTC-----CT-G-AG-----
Alignments
lowQualScore : 1 1 1 222 1 222222 1 222 1 1 1 1 1 1 22222222 222222 4444444444 8888888888888888888888888 11111111111 4444444444444 1 1 22222 1 4444444444444444444444 1 11 1 55555555555555555 33333 2 11 1 222 1 1 44444444 1 1 1111 1 11 111111 1 11 111 111 222222222222222 11 11 1 11 22222222 22222222222222222222222222222222222 11111111111111111111111111111111111111
lowQualScore : 5 1 5 1 5 000 5 1 999999 5 111 5 5 5 1 1 5 5 5 44444444 999999 0000000000 4444444444444444444444444 88888888888 7 7 6 5555555555555 0 3 3 77777 7 6 7 3 1111111111111111111111 3 55 6 3 7 6 88888888888888888 7 33333 6 7 44 3 333 3 7 3 22222222 7 2 1 6 0 7777 0 0 8 8 0 88 1 11 222222 6 6 6 6 00 0 777 3 444 999999999999999 8 3 33 0 33 3 0 33 0 0 5 1 5 0 1 00000000 66 99999999999999999999999999999999999 3 88888888 2 444 2 66666 77777777777777777777777777777777777777 6666 77777 3 1
lowQualScore : . . . . . ... . . ...... . ... . . . . . . . . ........ ...... .......... ......................... ........... . . . ............. . . . ..... . . . . ...................... . .. . . . . ................. . ..... . . .. . ... . . . ........ . . . . . .... . . . . . .. . .. ...... . . . . .. . ... . ... ............... . . .. . .. . . .. . . . . . . . ........ .. ................................... . ........ . ... . ..... ...................................... .... ..... . .
lowQualScore : 5 0 5 0 5 555 5 0 555555 0 555 5 5 5 0 0 5 5 5 55555555 555555 5555555555 0000000000000000000000000 77777777777 3 3 7 3333333333333 7 3 3 77777 3 7 3 3 7777777777777777777777 3 77 7 3 3 7 00000000000000000 3 33333 7 3 00 3 333 3 3 3 77777777 3 0 0 7 6 0000 8 8 2 0 6 88 0 00 444444 0 7 7 7 11 8 555 2 888 000000000000000 8 2 88 2 22 2 0 88 8 4 7 7 0 7 4 77777777 99 77777777777777777777777777777777777 3 88888888 7 777 7 77777 55555555555555555555555555555555555555 1111 11111 6 3
consensus : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
Reference ( family-1927 ) : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG---------------A-TT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTT-AGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT--TTATTAGTATGAATTATCAATTC-TTTTTAATCGTAATTGTTTTTGA--TTTCCCACATTGTATA---TTATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACT------TT----TG---AAATAC-C-----AATAAAATGAATGTCGTT-ATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG------TATGTGAAATATGTTGACGCTGAACTTGACATTTACGTTAATAACA----TTAAAAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGGGGATAAGTAACTTAAAATTCCCTAGTCAATTGAT-CT-TAAAAATT-ATATACATGT-CTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-G-TGTATTATATAAATAAAAC-AGGTGTCAAATTATACTG-TTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACACAAAAA-TA-AGTTAC-TGTTAGGGCTTAATAGTTATA--TGTA-T--A-TT-GAGGCGAGTTGTCCTGAGCTGAGAGGGGGGCG-GTTGTC-TTGG----A--GAG-GGAGC---GAGTTTGTT-----CC-T-AC-----AG--GG-------GATGAGTGTCTTGTGGCG----AGTT-----GTC--TAGGGGCG
gi|10 : CATTTACGT-GATCACA----TTAACACATAAGGAAAAAAATCTT--ATATTT-----------------G-GGAT-ATAAGTAA-TTATAAATTC-TAGTCAATTGAA-CTATAAAAATT-ATATACAgtgttccagtcattc
gi|11 : ---------------GAGGCGAGTTGTC-CTG-----A--GAG-GGAAC---GAGTT-GTC-----TT-----------G--GG-------G--------------GCG----AGCTAAATAGTCT-TAAGGGCGAGTTGTCC
gi|12 : gctgagaaTTATAAGTGTGAT--AATA-TA------TTG---------------GGGGCGAGTTGTC-CTG-----A--GAG-GGGGC---GAGTT-GAC-----CT-GAAG-----TG--GG-------G--------------GCG----AGTT-----GTCT-Tatat
gi|13 : aaatAT--A-TAATA------TTT---------------AGGGCGAATTGTCTCAAA----A--GAC-AGTGC---GAATT-GTC-----CT-G-AGCTGAGAG--AG-------G--------------ACG----AGTT-----GTC
gi|14 : ---------------GGGGCGAGTTGT--CTGA----A--GTA-GGGGC---GAGTT-GTC-----TT-G-A------AGTAGG-------G--------------GCG----AGTT-----ATTT-TGAGGGCAAGTTGc
gi|15 : TGG----A--GAG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GGTATTTTGG--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTTTCC
gi|16 : A----A--GAA-GGGAT---GAGTT-GTC-----GT-A------------GG-------G--------------ACA----AGTT-----GTCT-TAGGGGAGATTTGTCCagc
gi|17 : t--GAG-GGGAT---GAGTT-GTC-----TT-G-------------G-------G--------------GCG----AGTT-----GTTT-TAGGGGCGAGTTGTCCagcattc
gi|2 : ATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTATAATTTTCA-TTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGCA----GT----T-GTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTTT--------GATT----------TCTCCCACGCTGT-TATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCA-T------TT----TG---AAATACTC-----AATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGATT---TTTCCCA-CAAGAATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTGA---ATATTTACACTGAACTTGACATTTACATTAATCACA----TTACCACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA--CGTGGAG-ATAAGTAATTTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-T-T-T-TTATACAAATAAAACGAGGTGTCT--TTATATTGTTTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TCTAATACA-TA-TA------TTG---------------GAGGCGAGTTGTC-CTTA----A--GTG-GGGGC---GAGTT-GTC-----CT-A-AT-----AG--GG-------G--------------ACG----AGTT-----GTCT-TTGGGGTGAGTTGTCCagcat
gi|3 : tT--------AATTGTTT--GACTTCACCCAAGCTGT-TACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCACTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATA-CAATTTCTCATATAGA-AATTTCATGTTT---TTTTCAAGCAAGA--------AAAA-TGCATTAAAAGATAACTACA-A-----GTATGTGAAATAT-TCCACG-----CTTCACATTTACAT-----ACA----TC-ACAC---AA-AAAAAAATC-T-TGTATTGCTTTTAATCATCTG--CG----------------TATAATTCC-TAGTCAATTGAACCTATAAAAATTAATATCCAAA----ATTTTAC---TATT----G-AAATACAA-----TTT-TGT-GGTTATATATATAAAACTAAATG--T--TTATAGTG-TTT-AAAAA-GT--GT-TAATT-TTGAAACCA-ACACACACTAAAA-------TACATA-TA--------CAACTATA--TAT-AT--A-AA-AA------AAG---------------GGGGGGGG--------GG----G--GGG-GGGGG---GGG------------T-A-AG-----TG--GT-------G--------------ACAATATATTT-----GTATATTGGCGCGAGTTGTCC
gi|3 : T--G-TA-TA------TTG---------------GCG-CGAGTTGTC-CTGA----GCTGAG-GGGACATTGAGTT-GTT-----CTGG-AG-----AA--AG-------G--------------GTG----AGTT-----GTtgagctgaggggacattgagttgttctggagaaagggtgagttgt
gi|4 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaatatattATTCC-TAGTCAATTGAA-GTATAAAAATT-ATATACATGTTCTATTTTGA---TTTTTAA-A-AATTACAA-----TCTGT-G-TATTATATAAATAAAACGAGGTGTCT--TTATACTG--TTAAAAAA-GTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTA--------TGATTATA--TGTA-------A-TA------TTG---------------TGGGCGAGTTCTC-CTGAGCTGA--GAG-GGGGC---GAGTT-GTC-----TT-A-AG-----AG--GG-------G--------------ATG----AGTT-----GTCT-TTGGGGCGAGTTGTTC
gi|5 : TGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATC-T-TATATTTCTTTTAATCATTTA--CGTGCAG-ATAAGTAA-TTATAATTCC-TAGTTAATTGAA-CTATAAAAAAT-ATAAACATGTagc
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTA--------TAGTTATA--TGTA-------A-TA------TTG---------------AAGGCGAGTTGTC-CTGA----A--G-T-GGGGC---GAGTT-GTCCTGAGCT-G-AG-----AA--GG-------G--------------GCG----AGTT-----CTCT-T
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA---------------GTTATA--TGTAAT--A-T-----------TG---------------GGGACGAGTTGTC-CTGA----GCTGAGAGGGGT---GAGTT-GTC-----TT-G-AG-----AA--GG-------G--------------GCG----AGTT-----GTC
gi|8 : acacacacccaccTAT------TA--TTTTAATTTA----TCTATATTCTGTATGGCA----------ATAAACTAC---TAATTTTA--A--TTGT--AGT---AGGGAGTGTGATAGCTCGGC-TCATTTG-CTGG-----CCA--AGTAT-AATTATCAATTC-TTT--------AAc
gi|9 : attTACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTA--------TAGTTATA--TTTA-------A-TA------TTG---------------GAGGCGAGTTG-C-CCGA----A--AGT-GGGGC---GAGTT-GTC-----CT-G-AG-----
blockSeqs : T A A C . . A A . . A A T A A T A . T TA . CTCTCTCTAT TATCTTATAATTTTCATTTATATC TTTGAATCAA A T G TTGTAGT . . CATAT T G A G AATTGTTTGACT . TA G T A C GGGAAGCTACCGTGTAA T TTTAC A T T . . G A C TGTACATG A A T C T TTAT A G T AT T . TGGAG T . C A TT TTT T TAT CGAGGTCTTTT G T . TT A . AC . A A T . AG ATACATATATTG T AGCTGA A ATT . CTGAG AATAGGGTATTTTGG ATAT AAATA A A
blockSeqs : TTATTTTAATTTA A . T . GTTG . . . . . . . GATT . CG G . . . TTTG T . . T C . . . . . AG . . C . T . G . T T A . TGCAG . . . . TT . T G TTTTGTGG T T . T A . . . T A T . . ATAATATATTG . AGCT . . . . GAGCTGAGAGAGG . . . G
blockSeqs : . . . . . T A . GGAT . . . . . . . A TCTGTGTA G . . . . . . . A A T . . ATATAATATTT . AGCT . . . . GAAGTGGGG . . . A
blockSeqs : . . . . . . . . . . . . . . A A T . . ATAAAAAAAG . AA . . . . GAAGTAGGG . . . A
blockSeqs : . . . . A A . . . ATATTG . AA . . . . GGAGAAAGG . . . A
blockSeqs : . . . . . . ATATTG . GA . . . . AATAGGGG . . . T
blockSeqs : . ATATTG . AA . . . . AAGTGGTG . . . T
blockSeqs : ATATTG . AA . . . . AAGAGGGG . . . T
blockSeqs : . GG . . . . GAGAAGGG . . .
blockSeqs : . AA . . . . GAGAAGGG . . .
blockSeqs : . AA . . . . GGGG . .
blockSeqs : A . . . . AGGG . .
blockSeqs : A . . . . GGG . .
blockSeqs : . . . .
blockSeqCons : ** GA**** ******** ATATTG***************************** AAGAGGGG******************************
originalCons : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGTGGAG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAAT--A-TA-TA------TTG---------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CT-G-AG-----AG--GG-------G--------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
finalCons : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACA----TTAACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA--CGGA----ATAAGTAA-TTATAATTCC-TAGTCAATTGAA-CTATAAAAATT-ATATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-T-T-TATTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATA--TGTAATATTG-----------------------------GGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GTC-----CTAAGAGGGG------------------------------GCG----AGTT-----GTCT-TAGGGGCGAGTTGTCC
Alignments
lowQualScore : 1 1 1 222 1 222222 1 222 1 1 1 1 1 1 22222222 222222 4444444444 8888888888888888888888888 11111111111 4444444444444 1 1 22222 1 4444444444444444444444 1 11 1 55555555555555555 33333 2 11 1 222 1 1 44444444 1 1 22222 11111 22 55555555555555 1 11 111 111 222222222222222 1111 11 11 11 22222222 1111111 4444444444444444444444444 1111111111 222222222222
lowQualScore : 5 1 5 1 5 000 5 1 999999 5 111 5 5 5 1 1 5 5 5 44444444 999999 0000000000 4444444444444444444444444 88888888888 7 7 6 5555555555555 0 3 3 77777 7 6 7 3 1111111111111111111111 3 55 6 3 7 6 88888888888888888 7 33333 6 7 44 3 333 3 7 3 22222222 7 2 1 2 0 22222 11111 88 0 1 99999999999999 6 6 6 6 00 0 777 3 444 999999999999999 8 9999 0 33 33 33 0 0 5 1 5 5 00000000 2222222 0000000000000000000000000 3 88888888 2 444 2 2 7777777777 2 333333333333 6666 77777 3 1
lowQualScore : . . . . . ... . . ...... . ... . . . . . . . . ........ ...... .......... ......................... ........... . . . ............. . . . ..... . . . . ...................... . .. . . . . ................. . ..... . . .. . ... . . . ........ . . . . . ..... ..... .. . . .............. . . . . .. . ... . ... ............... . .... . .. .. .. . . . . . . ........ ....... ......................... . ........ . ... . . .......... . ............ .... ..... . .
lowQualScore : 5 0 5 0 5 555 5 0 555555 0 555 5 5 5 0 0 5 5 5 55555555 555555 5555555555 0000000000000000000000000 77777777777 3 3 7 3333333333333 7 3 3 77777 3 7 3 3 7777777777777777777777 3 77 7 3 3 7 00000000000000000 3 33333 7 3 00 3 333 3 3 3 77777777 3 0 0 5 6 66666 66666 44 8 0 00000000000000 0 7 7 7 11 8 555 2 888 000000000000000 8 8888 2 22 22 88 8 4 7 7 0 0 77777777 3333333 0000000000000000000000000 3 88888888 7 777 7 7 8888888888 8 999999999999 1111 11111 6 3
consensus : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACATTA----ACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA-C-----G---GG-ATAAGTAA-TTATAATTCC-TAGTCAATTGAAC-TATAAAAATTA-TATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-TN-TA-TTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATATGTA------ATATT-------------------------GGGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GT-C-----CT-A-AGAGGG------------GGCGAG----TT-----GTCT-TAGGGGCGAGTTGTCC
Reference ( family-1927 ) : NATACATTACCATTAAGCNCCCCACCCCNCTCCACACTCGAAGACTTATTGAAGACANTTATTCAGTAGATACAATTTTCGTAACTGACTCGTTTGTACAATATGAAAATTATACTTTTNTTCTGANATACTCCCAAGTTTTTGTGTAATTGATAATAGAATTCACCATTCAAATGCACGAACACACACAATAATTCTCTCTCTCTCTATGTATGTATGT------TA--TTTCA-TTTACAT-TATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTTTAGCA--CTGT--AGT-GTAGGGAGTGTATTGGCTCGGC-TCATTTG-CTAGCGT--CTATTAGTATGAATTATCAATTC-TTT--------AATTGTTT--GA--TCTCCCACGCTGT-TACGTTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCACT------TT----TG---AAATACTC-----AATAAAATGAA-GTCGTTTATATCGATTTCTCATATAGA-AATTTCATGATT---TTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG-----GTATGTGAAATATGTTNACGCTGAACTTGACATTTACGTTAATCACATTA----ACACATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTA-C-----G---GA-ATAAGTAA-TTATAATTCC-TAGTCAATTGAAC-TATAAAAATTA-TATACATGTTCTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-TT-TA-TTATATAAATAAAACGAGGTGTCT--TTATACTG-TTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATATGTA------ATATT-------------------------GGGGGCGAGTTGTC-CTGA----A--GAG-GGGGC---GAGTT-GT-C-----CT-A-AGAGGG------------GGCGAG----TT-----GTCT-TAGGGGCGAGTTGTCC
gi|1 : ATACAT-ACCATTAAGCCCCCC-CTCCACTCCACACTCGAAGACTT-TTGAAGACATTTATTCAGTAAATATAATTTTCGTAACTGACTCGTTTGTACAAT-TGAAAAT-AT-CTTTTTTTCTGAAAT-CTCCCAAGTTTTTGTGTAAT-AATAATAGAATTCACCATTCAAATACACAAACACACACAATAATTCTCT----------GTATGTATG---------------A-TT-ACATGTATATATTCTGTTTGGCATTTGA-TCAAATAAATTACATGTACTTT-AGCAGACTGTCTAGTAGTAGGGAGTGTATTGGTTTGGCCTCAATTGTCTAGCGT--TTATTAGTATGAATTATCAATTC-TTTTTAATCGTAATTGTTTTTGA--TTTCCCACATTGTATA---TTATTCAAGAC-TTAGGGT-ACTTTTCATTACACATGTAGACTCAGTTCACT------TT----TG---AAATAC-C-----AATAAAATGAATGTCGTT-ATATCGATTTCTCATATAGAGAATTTCATAATTGATTTTTCAA-CAAGAATTGAGTGAAAA-CGCACTAAAAGATAACTACATG------TATGTGAAATATGTTGACGCTGAACTTGACATTTACGTTAATAACATTA----AAAAATGAA-AAAAAAATCTT-TATATTTCTTTTAATCATTTAACTGTGGG---GG-ATAAGTAACTTAAAATTCCCTAGTCAATTGATC-T-TAAAAATTA-TATACATGT-CTATTTTAA---TTTTTAA-A-AAATACAA-----TCT-GTGTA-TTATATAAATAAAAC-AGGTGTCAAATTATACTG-TTAAAAAAAAGT--GTACAATCA-AAAAACAACAGACACACAAAAA-TA-AGTTAC-TGTTAGGGCTTAATAGTTATATGTA-------TATTGAGGCGAGTTGTCCTGAGCTGAGAGGGGGGCG-GTTGTC-TTGG----A--GAG-GGAGC---GAGTTTGTTC-----CT-ACAGGGGATGAGTGTCTTGTGGCGAG----TT-----GTC--TAGGGGCG
gi|10 : CATTTACGT-GATCACATTA----ACACATAAGGAAAAAAATCTT--ATATTTG--------------------G---GATATAAGTAA-TTATAAATTC-TAGTCAATTGAAC-TATAAAAATTA-TATACAgtgttccagtcattc
gi|11 : GAGGCGAGTTGTC-CTG-----A--GAG-GGAAC---GAGTT-GT-C-----TT------GGG------------GGCGAG----CTAAATAGTCT-TAAGGGCGAGTTGTCC
gi|12 : gctgagaa------ATATT-------------------------GGGGGCGAGTTGTC-CTG-----A--GAG-GGGGC---GAGTT-GA-C-----CTGA-AGTGGG------------GGCGAG----TT-----GTCT-Tatat
gi|13 : aaatttataagtgtgataatATATA------ATATT-------------------------TAGGGCGAATTGTCTCAAA----A--GAC-AGTGC---GAATT-GT-CCTGAGCT-G-AGAGAG------------GACGAG----TT-----GTC
gi|14 : GGGGCGAGTTGT--CTGA----A--GTA-GGGGC---GAGTT-GT-C-----TTGA-AGTAGG------------GGCGAG----TT-----ATTT-TGAGGGCAAGTTGc
gi|15 : TGG----A--GAG-GGGGC---GAGTT-GT-C-----CT-A-ATAGGGTATTTTG-----GGCGAG----TT-----GTCT-TAGGGGCGAGTTTTCC
gi|16 : A----A--GAA-GGGAT---GAGTT-GT-C-----GT-A-----GG------------GACAAG----TT-----GTCT-TAGGGGAGATTTGTCCagc
gi|17 : t--GAG-GGGAT---GAGTT-GT-C-----TT-------GG------------GGCGAG----TT-----GTTT-TAGGGGCGAGTTGTCCagcattc
gi|2 : ATACATTACCATTAAGCACCCCACCCCCCTCC-CAC---AAGACTTATTGAAGACAATTATTCAGTAGATACAATTT------CTAA-TCATTTG-A-AATATGAAAATTATACTTTTATTCTGATATACTCCCAAGTTTT-GTGTAATTGAT--TA----TCACCATTCAAATGTACG------CATAATAATTCTCTCTCTCTCTATGTATGTATGTATCTTATAATTTTCA-TTTATATCTATGTATTCTGTTTGGCATTTGAATCAA-TAAATTACATGTACTTCTAGCA----GT----T-GTAGGGAGTGTATTGGCTTGGC-TCATTTG-CTAGCATATCTATTAGTATGA-TTATCAATTCGTTT--------GATT----------TCTCCCACGCTGT-TATATTTATTTCAAACGTTAGGGT-ACTCCTCATTATACATGTAGACTCAGTTCA-T------TT----TG---AAATACTC-----AATAAAATGAA-GTTGTTTATAT-GATTTCTCATATAGA-AATTTCATGATT---TTTCCCA-CAAGAATTGAGTGAAAACCGCACTAAAAAATAACTACATGTACATGTATGTGA---ATATTTACACTGAACTTGACATTTACATTAATCACATTA----CCACATGAA-AAAAAAATCTTATATATTTCTTTTATTCATTTA-CGT---G---GAGATAAGTAATTTATAATTCC-TAGTCAATTGAAC-TATAAAAATTA-TATACATGTTCCATTTTAATTTTTTTTAATATAAATAAAACGAGGTCT-TT-T--TTATACAAATAAAACGAGGTGTCT--TTATATTGTTTTAAAAAA-GT--GTACAATCACAGAAACAA-ACACACACAAAAAATACAGTTACATGTTA--------TAGTTATATCTAATACATATATT-------------------------GGAGGCGAGTTGTC-CTTA----A--GTG-GGGGC---GAGTT-GT-C-----CT-A-ATAGGG------------GACGAG----TT-----GTCT-TTGGGGTGAGTTGTCCagcat
gi|3 : tT--------AATTGTTT--GACTTCACCCAAGCTGT-TACGTTTACTTCAAACGATATGATTACTCCTCATTATGC-------CTCCGTTCACTGGGAAGCTACCGTGTAAAAATACTCTTTACAATAAAAAAAAAGTCGTTTATA-CAATTTCTCATATAGA-AATTTCATGTTT---TTTTCAAGCAAGAA--------AAA-TGCATTAAAAGATAACTACA-A-----GTATGTGAAATAT-TCCACGCT-----TCACATTTACAT-----ACATCA-----CACA---A-AAAAAAATCTT--GTATTGCTTTTAATCATCTG-C-----G----------------TATAATTCC-TAGTCAATTGAACCTATAAAAATTAATATCCAAA----ATTTTAC---TATT----G-AAATACAA-----TTT-TG-TGGTTATATATATAAAACTAAATGT----TTATAGTG-TTTAAAAA--GT--GT-TAATTTT-GAAACCA-ACACACACTAAAA-TACATATACA-ACTA--------TA--TATATAAA------AAAAG-------------------------GGGGGGGGG--------GG----G--GGG-GGGG----GGGT--------------A-AGTGGT------------GACAATATATTT-----GTATATTGGCGCGAGTTGTCC
gi|3 : TATTTGTA-------TATT-------------------------GGCG-CGAGTTGTC-CTGA----GCTGAG-GGGACATTGAGTT-GT-T-----CTGG-AGAAAG------------GGTGAG----TT-----GTtgagctgaggggacattgagttgttctggagaaagggtgagttgt
gi|4 : taattgtttgacttcacccaagctgttacgtttacttcaaacgatatgattactcctcattatgcctccgttcactgggaagctaccgtgtaaaaatactctttacaataaaaaaaaagtcgtttatacaatttctcatatagaaatttcatgtttttttcaagcaagaaaaatgcattaaaagataactacaagtatgtgaaatattccacgcttcacatttacatacatcacacaaaaaaaaatcttgtattgcttttaatcatctgcgtataattcctagtcaattgaacctataaaaattaatatccaaaattttactattgaaatacaattttgtggttatatatataaaactaaatgtttatagtgtttaaaaagtgttaattttgaaaccaacacacactaaaatacatatacaactatatatataaaaaaagggggggggggggggggggggggtaagtggtgacaataATTCC-TAGTCAATTGAAG-TATAAAAATTA-TATACATGTTCTATTTTGA---TTTTTAA-A-AATTACAA-----TCTGTG-TA-TTATATAAATAAAACGAGGTGTCT--TTATACTG--TTAAAAAA-GTACATACAATCACAGAAACAA-ACACACAC-AAAAATACAGTTACATGTTA--------TGATTATATGTA------ATATT-------------------------GTGGGCGAGTTCTC-CTGAGCTGA--GAG-GGGGC---GAGTT-GT-C-----TT-A-AGAGGG------------GATGAG----TT-----GTCT-TTGGGGCGAGTTGTTC
gi|5 : TGAACTTGACATTTA-GTTAATCACATTATTTAACACAT--A-AAAAAAATCTT--ATATTTCTTTTAATCATTTA-C-----GTGCAG-ATAAGTAA-TTATAATTCC-TAGTTAATTGAAC-TATAAAAAATA-TAAACATGTagc
gi|6 : CAATCACAAAAACAA-ACACACACAAAAAATGCAGTTACATGTTA--------TAGTTATATGTA------ATATT-------------------------GAAGGCGAGTTGTC-CTGA----A--G-T-GGGGC---GAGTT-GT-CCTGAGCT-G-AGAAGG------------GGCGAG----TT-----CTCT-T
gi|7 : CACACACACCC-ACCCACCCACACAATACATTTACA---------------GTTATATGTA------ATATT-------------------------GGGGACGAGTTGTC-CTGA----GCTGAGAGGGGT---GAGTT-GT-C-----TT-G-AGAAGG------------GGCGAG----TT-----GTC
gi|8 : acacacacccaccTAT------TA--TTTTAATTTA----TCTATATTCTGTATGGCA----------ATAAACTAC---TAATTTTA--A--TTGT--AGT---AGGGAGTGTGATAGCTCGGC-TCATTTG-CTGG-----CCA--AGTAT-AATTATCAATTC-TTT--------AAc
gi|9 : attTACAATCACAAAAACAA-ACACACATAAAACATACAGTTACATGTTA--------TAGTTATATTTA------ATATT-------------------------GGAGGCGAGTTG-C-CCGA----A--AGT-GGGGC---GAGTT-GT-C-----CT-G-AG