lowQualScore : 11111111111111
lowQualScore : 2 1 1 33333333333333333 333333333 11 111111 1 1 4444444444 1 1 1 11 2222 11 66666666666666 1 44444 333333333333 111 1 4 1 2 4 55555555555555555 222222 11111 1 1 2 1 44444444444 333 111 11 1 1 1 2222 1 33333 11 1 11 11 2 11 222 1 1 22222 11 1 33 1 1 22 00000000000000 1 111 11111 22222 1 222 1 1 11 1 1 1 1 1 1 1 1 1 222 1 1 1 222 1 111 2222 1111 11 4444 111111 111 111 1 2 1 22 1 555555 22 11 1 1 1
lowQualScore : 1 3 5 3 0 0 99999999999999999 222222222 33 3 3 999999 0 0 3 5555555555 0 0 0 0 00 6666 2 1 33 2 22222222222222 0 2 22222 3 3 444444444444 777 99 3 3 3 7 0 7 7 3 3 7 0 33333333333333333 6 6 000000 6 6 6 6 22222 6 999 0 8 4 8 5 0 55555555555 444 6 777 33 0 2 0 1111 0 44444 33 0 33 4 33 2 8 11 222 8 0 1 0 0 0 0 6 88888 8 8 8 8 11 0 0 8 2 3 5 00 0 3 0 99 8 2 7 77777777777777 0 3 111 99999 55555 0 3 2 111 2 0 0 2 3 2 3 33 3 7 0 5 3 2 0 0 55 3 0 0 0 0 0 666 4 0 3 0 222 5 5 111 6666 2 3333 9 8 8 00 55 4 4 3 3 4444 888888 5 5 111 6 5 5 5 6 999 8 6 0 0 0 0 77 0 888888 33 6 33 3 0 6 66 6 0 0 3 0 6 11
lowQualScore : . . . . . . ................. ......... .. . . ...... . . . .......... . . . . .. .... . . .. . .............. . . ..... . . ............ ... .. . . . . . . . . . . . ................. . . ...... . . . . ..... . ... . . . . . . ........... ... . ... .. . . . .... . ..... .. . .. . .. . . .. ... . . . . . . . . ..... . . . . .. . . . . . . .. . . . .. . . . .............. . . ... ..... ..... . . . ... . . . . . . . .. . . . . . . . . .. . . . . . . ... . . . . ... . . ... .... . .... . . . .. .. . . . . .... ...... . . ... . . . . . ... . . . . . . .. . ...... .. . .. . . . .. . . . . . . ..
lowQualScore : 6 2 7 2 0 0 55555555555555555 888888888 88 2 2 000000 0 0 2 5555555555 0 0 0 2 88 5555 5 2 22 5 00000000000000 0 5 22222 2 2 222222222222 555 88 2 7 3 3 0 3 3 3 3 3 0 33333333333333333 7 7 000000 7 7 7 7 00000 0 222 6 0 0 0 8 8 99999999999 888 0 000 22 0 8 0 2222 0 00000 88 0 88 2 22 8 0 00 000 0 6 4 8 6 6 8 0 00000 0 0 0 0 00 8 8 0 5 2 0 55 0 2 0 55 8 5 0 00000000000000 0 2 000 22222 00000 0 2 5 000 5 0 0 0 2 5 2 22 2 0 0 5 2 5 0 0 88 2 0 0 0 0 0 000 5 0 2 0 555 0 0 000 2222 5 5555 8 2 2 22 55 0 0 6 6 6666 444444 7 7 666 0 7 7 7 7 333 0 4 8 0 0 0 00 0 555555 88 0 22 2 0 5 55 0 0 8 8 8 0 66
consensus : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-C-GG-CTGA-GTCATTTT-ATCATT---TT--TTAAA--AATTATCT-NA--CTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T-TT--CGCTTAAC-TTGA-C-ACCATATGGCNNGTTTACCCGTACCAAAG-ATGGCAG--CCTCTTT--NATGTCACCG-CATCGCTC--AG-ACTTATAGATTT-C--TTGAC-C-ATCTA---TTAGCATTTAAAATNAGTTTAAT-GTATAAAATCTATGATAATAAGTTT-AAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAATACA---G--C-TT-T-GAACAAA--A---TATT-CTTGAA-ATT-A-TATGTT--G--CATATTTTG-C-TACATC-GGGTATT-AATTTTTTTTGTATAT-ATA-T-T-GATAC-AGTGGGCATTAAGTG--AAAAA-CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTA--TTTAAAA-CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-ATG-ACATTC--AGCTTATTCGATGTATCATATATGATA-CATTGGGAATTAATTAATGGTCA-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAA-AT---AA--CAGTTAT-ATATT-T-CATTTT-GTG-TGC-----GT-ATTTTGC-A-TAGAACA-CT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTC-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCA-ATAA-TG-TAG-CCCTCTCCACGTT-TTTTTTTT----CCAAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCA-ACGTATATCAAACA-CACCAAA-TCA-TG-ATAAAAATA-A--TTTTGA-AAGCTCCTC-TCGGAGAATGGATCC-ACACAGCATATTCG-AGGACTCTGGCCTTCCAAGCTGTGCTATCCCAACTTTAGAATCAGGATGAAT
Reference ( gi|2 ) : TAACCCTCAAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-C-G--CTGA-GTCATTTT-GTCATT---TT--CTAAA--AATTATCT-TA--CTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T-TTT-CGCTTAAC-TTGA-C-ACCATATGGCATGTTTACCCGTACCAAAA-ATGGCAG--C-TCTT---GAAGTCACCG-CATCGCTC--A--ACTTATAGATTT-C--T-GAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTAT-ATAATAAGTTT-AAGAAATGGTTAGATTTTGACATGAAACATACA-GATATGTAAAATTAA-ACA---A--C-TT-T-GAACAAA--A---TATT-CTTGAA-ATT-A-TATGTT--G--CATATTT-G-C-TACATC-GG-TATT-AATTTTTTTTGTATAT-ATA-T-T-GATAC-A-TGGGCATTGAGTG--AAAAA-CGCA-GCTCAGTTT-GCTCATG----GTATTTC-TGATCAGGATAAATAAGTTAAAAACT--GAGAATAAG-TTTA--TCTAAAA-CATTAGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTAGC-----TTG-AATGT-TTATTTACAT-ATG-ACATTC--AGCTTATTCGATGTATCATATATGATA-CATTGGGAATTAATTAATGTTCT-CATTTTGGAT-ATATGC-ATGGAGAACCAACACATAAAAA-ATAAAAAAATAGTTAT-ATATT-T-CATTTT-ATA-TGC-----GT-ATTTTGC-A-TAGAACA-CT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGATA-ATTGAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATTTGATCTAAA-A-TGTA-G-ATAACAG-T-GATTCTAAAACTGGGAATGCTCCC-TTG--CTGCA-ATAA-TG-TAG-CCCTCTCCACGTTATTTTTTTT----CAAAAAGGGCT-ACAT-TA--CTAC-A-GCT-GT-TGT-ACCCTTATCA-ACGTATATCAAACA-CA-CAAA-TCA-AG-ATAAAAA-A-ACCTTTTG--AAGCCCCTC-TCGGAGAATGGATCC-ACACAGCATATTTG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAATA
gi|4 : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CAG--CTGA-GTCATTTTTATCAT----------AAG--AATTATCTATAAACTTTGAAATTAACTCTAATATGTTTGATT-TTCTAGA-GTTCATTTCATAAT-TTG-TGCTTAAC-TTGA-C-ATGATATGGCGTGTTTACC-GTACCAAGA--TGGCAG--CCTCTTT--GATGTCACCGGCATCGCTCCAG--ACTTATAGATTT-C--TTGAC---ATCTA---TTAGTATT-AAAATTAGTTTAAT-GTATAAAATCTATGATA-TAAGTTT-AAGAAG-GGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAT-ACA---GGCT-TT-T-GAACAAA--A---TATT-CTTGAA-ATT-A-TATGTT--G--CATATTTTG-C-TACATC-GGGTATT-TAATTTTTTTGTATA-----------ATAC-AGTGGGCATTAAGTG--AAAA--CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTA--TTTAAA--CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTAAATTGTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-ATG-ACATTC--AGCTTATTCGGTGTATCATATATGATA-CATTGGGAATTAATTAATGGTCA-CATTTTGGAT-ATATGC-ATACA-AACCAACACAT----------AAAAACAGTTAT-ATATT-T-CATTTT-GTG-TGC-----GT-ATTTT-C-ATTAGTACA-CT-CCATTAATTTCTGCGTAAATGC--TTCCTCTTTTTAATATCAGG-ATCAAACTGG---------AAAGGTCGGCTTTC-TC--AATGTTCCGCGATCTT-AT-C-AG-GGA-G-ATTAAATAAA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGATATCTGATCTAAA-A-TGTT-G-ATAACAG-T-GATTCTGAATCTGAGAATGTTCCCTTTG--CTGCATAT-A-TG-TAG-TCCTCTCCAC----CTTTTTTC----CGAAAAAGGCT-ACAT-TA--TTGC-AGGCT-GT-AGT-A-CCTTATCA-A-GTATATCAAACA-AA-CAAA-TCA-TG-ATGAAAATA-A--TTTTG--AAGCTCCTC-TCGGAGAATGGATTCAACA-AGCAT-TTCG-AGGACTCTGGCCTTCCAAG-TGTGCGATCCCAACTTTAGAATCAGGATGAAT
gi|13 : tctTAACCATCTAGTGCCCCATGTAGCATATATGCTACAT-gg
gi|3 : gatAACCCTCTAGTGCCCCATGTTACATAT-CGCTACATTGAAAA--AATGAT-C-GGCTTGATGTC--TTT-ATCATT---TTTTCTAAA--A-TTATTC-TA--ATTTGAAATTAACTCTAATATGTTTGATTCTGCATGA-GTTCATTTCATA-T-TT--CG-TTAACCTTGAAC-ACCATATGGCCGTTTTAC--GTACCAGAAGATGGCAAGCC-TCTT---TGTGTCAACG-CATCGCTC--AGAACT-AC-GATTT-C--TTGAC-C-ATCTA---TTAG-ATTTCAAATGAGCTTAATCGTATAAA-TCTATGATAATAAGTTTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAATACA---GG-C-TT-T-GAACAAA------TATTTCTTGAA--TT-A-T-TGTT--GGGCATATTTTG-CCTACATC-GG-TATT-AATTTTTTTGG-ATATTATACT-T-GATAC-ACTGGGCATTAAGTG--AAAAAACGCA-GCTCAATTT-GCTCATG----GTATATC-TGATCTTGAAAAATAAGTTAAAAATG--AAGAATAAG-TTTA--TTTAAAAACATT-GTA-AT--GGCAAT--GTTTGCTAATAATC-AA-CTGTTAATTTT--ATAAAAAGTTGGC-----TTG-AATGT-TTATTTA-AT-ATGGACATTC--AGCTTATTCGA-GTATCCTATATGATAACATTGGGAATTAATTAATGGTCA-CATTTTGGAT-AT--GC-ATACAGAACCAACACATAAAAACAT-------T--CTAT-ATATTAT-CATTTT-GTGGTGC-----GTCATTTTGCTA-TAGAACAACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGGAATCAAACTGGAAAGGAAGC-AAGGTCGGC-TTC-T-AAAA-GTT-CGCAATCTT-AT-CTAG-GGAGA-ATT-AATAGA-TTTTACCCG-TTG-GATAATGAATAT--AATTGGG--AATATGATCTAAA-ACTGTT-GCATAA-AG-TGGATTCTAAA----------------TTG--CTTCA-ATAATTG-TAG-CCTCCTCCATGTC-TTTTTTTT----CCAAAAAGGCT-ACAT-TACTCTGC-A-GCT-GT-TGTAACCCTTATCATATA-ATATCAAACA-CACCAAA-TCA-TG-ATAAAAT-A-A--TTTTGA-AAGCTCCTCATCGGAGTATGGATCC-ACACAGCATATTCA-GGGAC-CTGGCCCTCCAAGCTGTGCTATCC--ACTTTAGA--TAGAATGA
gi|1 : ACCCTCTAGTGCCCC-TGTAGCATATATGCTACAT-GAAAATAAATGAT-C-GG-CTG---------T-ATCATT---TT--TTAGA--AATTATTT-AA--TTTTGAAATTAACTCTAATATGTTTAATT-TGCTAGA-GTTCATTTCATA-TATTTGCACTTAAC-TTGA-C-ACCATATGGCAAGTTTACCT-TACCAAAG-ATGGCAG--CCTCTTTGCAAAGTCACAG-CATCGCTC--AG-ACTTATAGATTT-TCTT-GAC-CCATCTA---TTAGCATTTAAAATAAGTTTAAT-GTATAAAATCTATGATAATA-GTTT-AAGAAAGGGTTAAATTT-GACATGTAACATACAAGATACGTAAA-TTAA-ATACAGA--C-TT-T-TGACAAA--A---TGTT-CTTGAA-ATT-A-TATGTT--G--CATACTT-G-C-CTC-TCGGG-TATT-AA-TTTTTTTGTATAT-TTA-TAT-GATAC-AGTGGGCATTAAGTG---AAAA-CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTTAAAACT--GAGAATAAG-TTTA--TCTAAAA-CATTTGGA-AT--GACAA---GTTTGCTTATAATCAAAACTGTTAA-TTTTGATAAAAAGTTGGC-----TTGAAATGT-TTATTTACAT-ATG-ACATTC--AGCTTTATCGATGTATCATATATGGTA-CATTGGGAATTAATTAATGGTCTCCATTTTGGAT-ATATGC-AT-CAGAACCAA-ACATGAAAA-ATAGTAA------TAT-AT-TT-T-CATTTT-ATG-TGC-----GT-A-TTTGC-A-TAGAACA-CTCCCGTTAATTTCTGC-TAAATGCTTTTCCTC-TTTTAATATCAGG-ATCAAACTGG-AAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-ATAC-AG-GGAGATATTAATTTGATTTTTAAAAGTTTGCAATAATGAATATAAAATTGGGGAAATCTGATCTAAAGA-TTTA-T-ATAACA--T-GATTCTAAAACTGAGAATGTTCCT-TTGTCCTGC--ATAA-TG-TAGCCCCTCTCCACGTTTTTTTTTTTTTCCCCAAAAGGGCTAACAT-TA--TTGC-A-GCT-GT-TGC-ACTCTTATCA-ACGTATATCAAACA-CATTAAA-TTATTG-ATAAACA-ATAATTTTTGAAAAGCTCCTC-TCGG-GAATGGATCC-ACACAGTATATTCGAAGGACTCTGGCCTTCC-AG-TGTGCTAT-CCAACTTTAGAATCAGGATGAA
gi|7 : aattACCCTT--GTGTCCTGTGTAGCATAT--GCTAC-T-GAAAATAAATAATGC-GG-CTGA-TTCATTTT--TTATTATGTT--TTAAAGGAAT-ATCT-AA--CTTTGAAATGAACTGTCATATGTTTGACT-TGCTAGGTGTTCGTTTC--------------TAAC-TTGA-CTAACACATACTTTGTTTA--CGTA-CATAG-AC-GCAA--C-----------GTCACCG-CGT-GCTC--AG-GTTTATAGATTTAT--T-GATAT-ATCTAGGGTTAAC--TTAAGAT
gi|4 : CATGTAGCATATATGCTACAT-G
gi|1 : tcttaaccctctagtgcccCATGTAGCATATATGCTACAaaaataaatgatcagctgagtcatttttatcataagaattatctataaactttgaaattaactctaatatgtttgattttctagagttcatttcataatttgtgcttaacttgacatgatatggcgtgtttaccgtaccaagatggcagcctctttgatgtcaccggcatcgctccagacttatagatttcttgacatctattagtattaaaattagtttaatgtataaaatctatgatataagtttaagaagggttagattttgacatgaaacatacaagatatgtaaattatacaggcttttgaacaaaatattcttgaaattatatgttgcatattttgctacatcgggtatttaatttttttgtataatacagtgggcattaagtgaaaacgcagctcattttgctcatggtatttctgatcttgaaaaataagttaaaaactgagaataagtttatttaaacatttgtaatgacaagtttgcttataatcaaactgtaaattgttgataaaaagttggcttgaatgtttatttacatatgacattcagcttattcggtgtatcatatatgatacattgggaattaattaatggtcacattttggatatatgcatacaaaccaacacataaaaacagttatatatttcattttgtgtgcgtattttcattagtacactccattaatttctgcgtaaatgcttcctctttttaatatcaggatcaaactggaaaggtcggctttctcaatgttccgcgatcttatcagggagattaaataaattttaaaagtttggataatgaatataaattggggatatctgatctaaaatgttgataacagtgattctgaatctgagaatgttccctttgctgcatatatgtagtcctctccaccttttttccgaaaaaggctacattattgcaggctgtagtaccttatcaagtatatcaaacaaacaaatcatgatgaaaataattttgaagctcctctcggagaatggattcaacaagcatttcgaggactctggccttccaagtgtgcgatcccaactttagaatcaggatgaatgg
gi|13 : aattaccctctagtgccccATGTAGCATATATGCTACAT-Gaaaataaatgatcggctgtatcattttttagaaattatttaattttgaaattaactctaatatgtttaatttgctagagttcatttcatatatttgcacttaacttgacaccatatggcaagtttaccttaccaaagatggcagcctctttgcaaagtcacagcatcgctcagacttatagattttcttgacccatctattagcatttaaaataagtttaatgtataaaatctatgataatagtttaagaaagggttaaatttgacatgtaacatacaagatacgtaaattaaatacagacttttgacaaaatgttcttgaaattatatgttgcatacttgcctctcgggtattaatttttttgtatatttatatgatacagtgggcattaagtgaaaacgcagctcattttgctcatggtatttctgatcttgaaaaataagtttaaaactgagaataagtttatctaaaacatttggaatgacaagtttgcttataatcaaaactgttaattttgataaaaagttggcttgaaatgtttatttacatatgacattcagctttatcgatgtatcatatatggtacattgggaattaattaatggtctccattttggatatatgcatcagaaccaaacatgaaaaatagtaatatattttcattttatgtgcgtatttgcatagaacactcccgttaatttctgctaaatgcttttcctcttttaatatcaggatcaaactggaaggaagcaaaggtcggcttctcaaaatgttcgcgatcttatacagggagatattaatttgatttttaaaagtttgcaataatgaatataaaattggggaaatctgatctaaagatttatataacatgattctaaaactgagaatgttcctttgtcctgcataatgtagcccctctccacgtttttttttttttccccaaaagggctaacattattgcagctgttgcactcttatcaacgtatatcaaacacattaaattattgataaacaataatttttgaaaagctcctctcgggaatggatccacacagtatattcgaaggactctggccttccagtgtgctatccaactttagaatcaggatgaa
gi|11 : gattaaccatctagtgcccAAACATACAAGGTATGTAAA-TTAATACA---G--GGTT-T-GGAAAAACAA---TATT-CTTGAA-ATT-A-TAT
gi|5 : TATGTAAA--TAATACAG--A--C-TT-TTGAACAAA--AAAGTATC-TTCGAACATT-AATATGTTAGG--CATATTT-G-C-TAC-TC-GGGTATTTAATTTTTGTTATAT----TA-C-TAGATACTG-TGGGCATTAAGTGCGAAAAA-CGCAAGCTCATTTTTGCTCATGCGTGGTATTTCATGATCTTAAAAAATTAGTTAAAAACTCAAAGAATAAGCTTTACTTATAAAA-CATTTGTACATCGAACAAAGTGTCTG--TATAATC-AA-TTTTTAATTTT-GATAAAA-GTGGGCC----TTG-AATGTCTTATTTACATTATG-AAATTCCAAGCTTAT-CGATGTATCATATATGA-A-CATTGG-AATTA-TTAATGGTCAACATTTTGGATCATATGCGATACATAACTAACACATAAAAA----------CAGTTATTATATT-TACATTTTTGTG-TGTCAAGAGT-ATTCTGC-AATA-AACA-CT-CCAT-AATTTCTGCGTAAA-GC-TT-CCTCCTTTTAATATCAGA-CTCAAATGGAAAAGGAAGCAAAG--CGGC-TTCTTCAAAATGTT-CGCGATCGTAAT-C-AGAGGAGA-ATTAAAa
gi|9 : gatAATTGATACAGA-A--C-TTGT-TAAAAAA--A---TATT-CTTGAA-ATTTA-TATGTT--G--CATATTT-GAT-TACATC-GGTTATT-AA--GTTTTTGTATTT-AT
gi|8 : TA-AT--GACAA---GTTTGCTTATAATA-AAACTGTAAATTGTTGATAAAAAGTTGGCTTAAATTG-AATGT-TTCTTTACAT-ATG-ACATTC--AGCTTATTCGGTG
gi|1 : CAATGTACCATATATGATA-CATCG
gi|6 : aattaccctctagtgcccctgtagcatatatgctacatgaaaataaatgatcggctgtatcattttttagaaattatttaattttgaaattaactctaatatgtttaatttgctagagttcatttcatatatttgcacttaacttgacaccatatggcaagtttaccttaccaaagatggcagcctctttgcaaagtcacagcatcgctcagacttatagattttcttgacccatctattagcatttaaaataagtttaatgtataaaatctatgataatagtttaagaaagggttaaatttgacatgtaacatacaagatacgtaaattaaatacagacttttgacaaaatgttcttgaaattatatgttgcatacttgcctctcgggtattaatttttttgtatatttatatgatacagtgggcattaagtgaaaacgcagctcattttgctcatggtatttctgatcttgaaaaataagtttaaaactgagaataagtttatctaaaacatttggaatgacaagtttgcttataatcaaaactgttaattttgataaaaagttggcttgaaatgtttatttacatatgacattcagctttatGA-TTTTAAAAGTTTG-GACAGTGAGTA---AATTGGA-AAACTTGATCTAAA-A-TGTCTG-ATAACAGGT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCA-ATAA-TG-TAT-GCCTCTCTACTTT-TTTTTTTT----CCAAAAGGGCC-ACATGTA--TTGCAA-GCTGGT-TGTAAACCTTATCA-ACGTATATCAAACACCA-CAAATTCA-TGCATAAAAATA-A--TTTTG--AAGCTCCTC--CGGAGAATGGATCC-ACATAGCATA-TCG-AAGACTCTGGCC-TCAAAGCTGTGCTATCCCAACTTTAG-ATCAGGATGAAggaattaattaatggtctccattttggatatatgcatcagaaccaaacatgaaaaatagtaatatattttcattttatgtgcgtatttgcatagaacactcccgttaatttctgctaaatgcttttcctcttttaatatcaggatcaaactggaaggaagcaaaggtcggcttctcaaaatgttcgcgatcttatacagggagatattaatttgatttttaaaagtttgcaataatgaatataaaattggggaaatctgatctaaagatttatataacatgattctaaaactgagaatgttcctttgtcctgcataatgtagcccctctccacgtttttttttttttccccaaaagggctaacattattgcagctgttgcactcttatcaacgtatatcaaacacattaaattattgataaacaataatttttgaaaagctcctctcgggaatggatccacacagtatattcgaaggactctggccttccagtgtgctatccaactttagaatcaggatgaa
gi|14 : TA--CTGCA-ATAA-TG-TAG-CCCTCTCC
gi|1 : ttcG--CTGCA-ATAA-TGTTAG-CCCTTTcatgtat
gi|10 : aattaccctctagtgcccctgtagcatatatgctacatgaaaataaatgatcggctgtatcattttttagaaattatttaattttgaaattaactctaatatgtttaatttgctagagttcatttcatatatttgcacttaacttgacaccatatggcaagtttaccttaccaaagatggcagcctctttgcaaagtcacagcatcgctcagacttatagattttcttgacccatctattagcatttaaaataagtttaatgtataaaatctatgataatagtttaagaaagggttaaatttgacatgtaacatacaagatacgtaaattaaatacagacttttgacaaaatgttcttgaaattatatgttgcatacttgcctctcgggtattaatttttttgtatatttatatgatacagtgggcattaagtgaaaacgcagctcattttgctcatggtatttctgatcttgaaaaataagtttaaaactgagaataagtttatctaaaacatttggaatgacaagtttgcttataatcaaaactgttaattttgataaaaagttggcttgaaatgtttatttacatatgacattcagctttatcgatgtatcatatatggtacattgggaattaattaatggtctccattttggatatatgcatcagaaccaaacatgaaaaatagtaatatattttcattttatgtgcgtatttgcatagaacactcccgttaatttctgctaaatgcttttcctcttttaatatcaggatcaaactggaaggaagcaaaggtcggcttctcaaaatgttcgcgatcttatacagggagatattaatttgatttttaaaagtttgcaataatgaatataaaattggggaaatctgatctaaagatttatataacatgattctaaaactgagaatgttcctttgtcctgcataatgtagcccctctccacgtttttttttttttccccaG--CTGCA-ATAA-TG-TAA-CCCTCTCCtgttgcactcttatcaacgtatatcaaacacattaaattattgataaacaataatttttgaaaagctcctctcgggaatggatccacacagtatattcgaaggactctggccttccagtgtgctatccaactttagaatcaggatgaa
gi|15 : aagtagccctctccccctttttttcG--CTGCA-ATAA-TG-TAG-CCCTCTCCtacatgtatatacatgtatat
gi|16 : cG--CTGCA-ATAA-TG-TAA-CCCTTTCtactgttta
gi|4 : --CTGCA-ATAA-TG-TAG-CCTTTTTCtacatgt
gi|10 : tcttaaccctctagtgccccatgtagcatatatgctacatgaaaataaatgatcagctgagtcatttttatcataagaattatctataaactttgaaattaactctaatatgtttgattttctagagttcatttcataatttgtgcttaacttgacatgatatggcgtgtttaccgtaccaagatggcagcctctttgatgtcaccggcatcgctccagacttatagatttcttgacatctattagtattaaaattagtttaatgtataaaatctatgatataagtttaagaagggttagattttgacatgaaacatacaagatatgtaaattatacaggcttttgaacaaaatattcttgaaattatatgttgcatattttgctacatcgggtatttaatttttttgtataatacagtgggcattaagtgaaaacgcagctcattttgctcatggtatttctgatcttgaaaaataagttaaaaactgagaataagtttatttaaacatttgtaatgacaagtttgcttataatcaaactgtaaattgttgataaaaagttggcttgaatgtttatttacatatgacattcagcttattcggtgtatcatatatgatacattgggaattaattaatggtcacattttggatatatgcatacaaaccaacacataaaaacagttatatatttcattttgtgtgcgtattttcattagtacactccattaatttctgcgtaaatgcttcctctttttaatatcaggatcaaactggaaaggtcggctttctcaatgttccgcgatcttatcagggagattaaataaattttaaaagtttggataatgaatataaattggggatatctgatctaaaatgttgataacagtgattctgaatctgagaatgttccctttgctgcatatatgtagtcctctccaccttttttccG-TAG-CCCTCTCCCC----CTTTTTTT----CGGAGAGGGTT-ACAT-TA--TTGC-A-GCT-ACATGT-A----TATAC-ATGTATATgctgtagtaccttatcaagtatatcaaacaaacaaatcatgatgaaaataattttgaagctcctctcggagaatggattcaacaagcatttcgaggactctggccttccaagtgtgcgatcccaactttagaatcaggatgaatgg
gi|15 : aaAGAGGGCT-ACAT-TA--TTGC-A-GCT-AC-TGT-
gi|16 : cggAAAGGGTT-ACAT-TA--TTGC-A-GCT-tta
gi|12 : gGACTCTGGCCTTCCAAG-TGTGCTATCCCATTTTTAAAATCAGGATGAATacatgt
Alignments
lowQualScore : 11 11 1111 3333333333 11 1 333333 111 111 1 1 33 111 1 1 2222222222 111 1111 11 11 111 22222 111 55555555555 22222 1 1 111 1 1111 1111 11111 111 1 11 2222 1
lowQualScore : 3 1 7 6 0 8 8 88 66 99 5 8 11 0 5555 8 8 0 1111111111 8 8 8 22 33 8 0 8 0 111111 8 8 0 8 0 999 444 44 0 1 0 3 2 3 3 0 3 3 0 5 5 5 55 5 77 5 000 0 5 5 5 99 99 9 6 7 0 6 3 6 7777777777 5 111 88 8 1 8 7777 8 11 8 8 11 0 0 6 99 888 6 7 33333 6 6 6 6 99 88 0 777 0 8 8 3 5 33333333333 8 8 8 8 8 8 8 00000 8 0 8 6 8 8 0 0 88 0 3 8 0 0 8 8 0 0 8 8 8 8 8 88 3 8 0 8 444 0 1 8 8 7777 8 8 6 8 77 5 5 5 5 8888 66666 6 5 5 77 5 5 5 6 555 3 3 6 3 8 8 8 3 8 0 11 4444 88 0 8 11 8 1 9
lowQualScore : . . . . . . . .. .. .. . . .. . .... . . . .......... . . . .. .. . . . . ...... . . . . . ... ... .. . . . . . . . . . . . . . . .. . .. . ... . . . . .. .. . . . . . . . .......... . ... .. . . . .... . .. . . .. . . . .. ... . . ..... . . . . .. .. . ... . . . . . ........... . . . . . . . ..... . . . . . . . . .. . . . . . . . . . . . . . . .. . . . . ... . . . . .... . . . . .. . . . . .... ..... . . . .. . . . . ... . . . . . . . . . . .. .... .. . . .. . . .
lowQualScore : 5 7 3 7 8 0 0 88 22 00 6 0 00 8 0000 0 0 8 8888888888 0 0 0 00 22 0 8 0 0 888888 0 0 8 0 8 222 000 00 8 0 0 2 5 2 2 0 2 2 8 7 7 7 00 7 99 7 000 1 7 7 7 22 22 5 7 3 8 7 5 7 6666666666 0 888 88 0 0 0 0000 0 00 0 0 00 8 8 7 22 333 7 3 33333 7 7 7 7 22 88 8 000 8 0 0 8 0 22222222222 0 0 0 0 0 0 0 00000 0 8 0 0 0 0 8 8 88 8 8 0 6 8 0 0 8 8 0 0 0 0 0 88 8 0 8 0 444 0 4 0 0 4444 0 0 0 0 99 0 7 7 0 0000 77777 7 7 7 99 7 7 7 7 222 2 7 7 2 0 0 0 8 0 8 00 6666 88 8 0 66 0 7 2
consensus : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTATCTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGCGTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ATGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAGTTT-AAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACA-GA-CTT-TGAACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTT-GC-TACATCGGGTATT-AATTTTTTTTG-TATATATA-T-T-GATACAGTGGGCATTAAGTG--AAAA-ACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
Reference ( family-191 ) : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTT--ATCATTTTTTA-AA--AATTATCTN---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TT-CGCTTAAC-TTGA-C-ACCATATGGCNNGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTN--ATGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATNAGTTTAAT-GTATAAAATCTATGATAATAAGTTT-AAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACA-G--CTT-TGAACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTTTGC-TACATCGGGTATT-AATTTTTTTTG-TATATATA-T-T-GATACAGTGGGCATTAAGTG--AAAA-ACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTC-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACACCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAGCTGTGCTATCCCAACTTTAGAATCAGGATGAAT
gi|1 : ACCCTCTAGTGCCCC-TGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-G---------T--ATCATTTTTTA-GA--AATTATTTA---ATTTTGAAATTAACTCTAATATGTTTAATT-TGCTAGA-GTTCATTTCATA-TATTTGCACTTAAC-TTGA-C-ACCATATGGCAAGTTTACCT-TACCA-AAGATGGCA-GCCTCTTTGCAAAGTCACAG-CATCGCTC-AGACTTATAGATTTTCTTGAC-CCATCTA---TTAGCATTTAAAATAAGTTTAAT-GTATAAAATCTATGATAATA-GTTT-AAGAAAGGGTTAAATTT-GACATGTAACATACAAGATACGTAAA-TTAAATACA-GA-CTT-TTGACAA--A-A---TGTTCTTGAA-ATT-A-TATGTT--G--CATACTT-GC-CTC-TCGGGTATT-AATTTT-TTTG-TATATTTA-TAT-GATACAGTGGGCATTAAGTG---AAA-ACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTTAAAACT--GAGAATAAG-TTTATCT-A--AAACATTTGGA-AT--GACAA---GTTTGCTTATAATCAAAACTGTTAA-TTTTGATAAAAAGTTGGC-----TTGAAATGT-TTATTTACAT-AT-GACATTC--AGCTTTATCGATGTATCATATATGGT-ACATTGGGAATTAATTAATGGTCTC-CATTTTGGAT-ATATGC-AT-CAGAACCAA-ACATGAAAAAT--------AGT-AAT-ATATTT-T-CATTTT-AT-GTGC-----GT-A-TTTGC-A-TAGAAC-ACTCCCGTTAATTTCTGC-TAAATGCTTTTCCTC-TTTTAATATCAGG-ATCAAACTGG-AAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-ATAC-AG-GGAGATATTAATTTGATTTTTAAAAGTTTGCAATAATGAATATAAAATTGGGGAAATCTGATCTAAAGA-TTTA-T-ATAACA--T-GATTCTAAAACTGAGAATGTTCCT-TTGTCCTGC-ATA-A-TGTAGCCCCTCTCCACGTT-TTTTTTTTTTTCCCC-AAAAGGGCTAACAT-TA--TTGC-A-GCT-GT-TGC-ACTCTTATCAACGT-ATATCAAACACATTAAA-TTATTG-ATAAACAATAA--TTTTTGAAAAGCTCCTC-TCGG-GAATGGATCCACAC-AGTATATTCGAAGGACTCTGGCCTTCCAG--TGTGCTAT-CCAACTTTAGAATCAGGATGAA
gi|10 : aattGTAG-CCCTCTCCCC----CTTTTTTT-----CG-GAGAGGGTT-ACAT-TA--TTGC-A-GCT-ACATGT-A----TATACATGT-ATAT
gi|11 : aaAAACATACAAGGTATGTAAA-TTAA-TACAGG--GTT-TGGAAAAACA-A---TATTCTTGAA-ATT-A-TAT
gi|12 : GACTCTGGCCTTCCAAG-TGTGCTATCCCATTTTTAAAATCAGGATGAATa
gi|13 : TAACCATCTAGTGCCCCATGTAGCATATATGCTACAT-gg
gi|14 : gatTA--CTGCAATA-A-TGTAG-CCCTCTCC
gi|15 : ttcG--CTGCAATA-A-TGTAG-CCCTCTCCcatgtat
gi|16 : cAAAGGGTT-ACAT-TA--TTGC-A-GCT-tactgttta
gi|2 : gTAACCCTCAAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CG-CT-GA-GTCATTTT--GTCATTTTCTA-AA--AATTATCTT---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTTCGCTTAAC-TTGA-C-ACCATATGGCATGTTTACCCGTACCA-AAAATGGCA-GC-TCTTGA--A-GTCACCG-CATCGCTC-A-ACTTATAGATTT-CT-GAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTAT-ATAATAAGTTT-AAGAAATGGTTAGATTTTGACATGAAACATACA-GATATGTAAAATTAA--ACA-A--CTT-TGAACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTT-GC-TACATCGG-TATT-AATTTTTTTTG-TATATATA-T-T-GATACA-TGGGCATTGAGTG--AAAA-ACGCA-GCTCAGTTT-GCTCATG----GTATTTC-TGATCAGGATAAATAAGTTAAAAACT--GAGAATAAG-TTTATCT-A--AAACATTAGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTAGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGTTC-T-CATTTTGGAT-ATATGC-ATGGAGAACCAACACATAAAAAATAAAAAAATAGT-TAT-ATA-TT-T-CATTTT-AT-ATGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGATA-ATTGAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATTTGATCTAAA-A-TGTA-G-ATAACAG-T-GATTCTAAAACTGGGAATGCTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTTATTTTTTTT-----CA-AAAAGGGCT-ACAT-TA--CTAC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACA-CAAA-TCA-AG-ATAAA-AA-AACCTTTT--G-AAGCCCCTC-TCGGAGAATGGATCCACAC-AGCATATTTG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAATacatgt
gi|3 : AACCCTCTAGTGCCCCATGTTACATAT-CGCTACATTGAAAA--AATGAT-CGGCTTGATGTC--TTT--ATCATTTTTTCTAA--AATTATTCT---AATTTGAAATTAACTCTAATATGTTTGATTCTGCATGA-GTTCATTTCATA-T--TT-CG-TTAACCTTGAAC-ACCATATGGCCGTTTTAC--GTACCAGAAGATGGCAAGCCTCTTTG---TGTCAACG-CATCGCTC-AGAACTAC-GATTT-CTTGAC-C-ATCTA---TTAG-ATTTCAAATGAGCTTAATCGTATAAA-TCTATGATAATAAGTTTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACA-GG-CTT-TGAACAA--ATA---T-TTCTTGAA--TT-A-T-TGTT--GGGCATATTTTGCCTACATCGG-TATT-AATTTTTTTGGATAT-TATACT-T-GATACACTGGGCATTAAGTG--AAAAAACGCA-GCTCAATTT-GCTCATG----GTATATC-TGATCTTGAAAAATAAGTTAAAAATG--AAGAATAAG-TTTATTTAA--AAACA-TTGTA-AT--GGCAAT--GTTTGCTAATAATC--AACTGTTAATTTT--ATAAAAAGTTGGC-----TTG-AATGT-TTATTTA-AT-ATGGACATTC--AGCTTATTCGA-GTATCCTATATGATAACATTGGGAATTAATTAATGGTC-A-CATTTTGG---ATATGC-ATACAGAACCAACACATAAA----AA-----CATTCTAT-ATA-TTAT-CATTTT-GTGGTGC-----GTCATTTTGCTA-TAGAACAACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGGAATCAAACTGGAAAGGAAGC-AAGGTCGGC-TTC-T-AAAA-GTT-CGCAATCTT-AT-CTAG-GGAGA-ATT-AATAGA-TTTTACCCG-TTG-GATAATGAATAT--AATTGGG--AATATGATCTAAA-ACTGTT-GCATAA-AG-TGGATTCTAAA----------------TTG--CTTCAATA-ATTGTAG-CCTCCTCCATGTC-TTTTTTTT-----CC-AAAAAGGCT-ACAT-TACTCTGC-A-GCT-GT-TGTAACCCTTATC-ATATAATATCAAACACACCAAA-TCA-TG-AT-AA-AATAA--TTTT--GAAAGCTCCTCATCGGAGTATGGATCCACAC-AGCATATTCA-GGGAC-CTGGCCCTCCAAGCTGTGCTATCC--ACTTTAGA--TAGAATGAa
gi|4 : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CAGCT-GA-GTCATTTTT-ATCAT-----A-AG--AATTATCTATAAACTTTGAAATTAACTCTAATATGTTTGATT-TTCTAGA-GTTCATTTCATAAT--TTGTGCTTAAC-TTGA-C-ATGATATGGCGTGTTTACC-GTACCA-A-GATGGCA-GCCTCTTTG--ATGTCACCGGCATCGCTCCAGACTTATAGATTT-CTTGAC---ATCTA---TTAGTATT-AAAATTAGTTTAAT-GTATAAAATCTATGATA-TAAGTTT-AAGAA-GGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTA--TACA-GGCTTT-TGAACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTTTGC-TACATCGGGTATT-TAATTTTTTTG-TATA----------ATACAGTGGGCATTAAGTG--AAAA--CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AA-CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTAAATTGTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGGTGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACA-AACCAACACATAAA----AA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTT-C-ATTAGTAC-ACT-CCATTAATTTCTGCGTAAATGC--TTCCTCTTTTTAATATCAGG-ATCAAACTGG---------AAAGGTCGGCTTTC-TC--AATGTTCCGCGATCTT-AT-C-AG-GGAG--ATTAAATAAA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGATATCTGATCTAAA-A-TGTT-G-ATAACAG-T-GATTCTGAATCTGAGAATGTTCCCTTTG--CTGC-ATATA-TGTAG-TCCTCTCCAC-----CTTTTTT-----CCGAAAAAGGCT-ACAT-TA--TTGC-AGGCT-GT-AGT-A-CCTTATCAA-GT-ATATCAAACA-AACAAA-TCA-TG-ATGAA-AATAA--TTTT--G-AAGCTCCTC-TCGGAGAATGGATTCA-ACAAGCAT-TTCG-AGGACTCTGGCCTTCCAAG-TGTGCGATCCCAACTTTAGAATCAGGATGAAT
gi|5 : tctTATGTAAA-T-AA-TACA-GACTTT-TGAACAA--A-AAAGTATCTTCGAACATT-AATATGTTAGG--CATATTT-GC-TAC-TCGGGTATTTAATTTTTGTTA-TAT---TA-C-TAGATACTGTGGGCATTAAGTGCGAAAA-ACGCAAGCTCATTTTTGCTCATGCGTGGTATTTCATGATCTTAAAAAATTAGTTAAAAACTCAAAGAATAAGCTTTACTT-ATAAAACATTTGTACATCGAACAAAGTGTCTG--TATAATC-AA-TTTTTAATTTT-GATAAAA-GTGGGCC----TTG-AATGTCTTATTTACATTAT-GAAATTCCAAGCTTAT-CGATGTATCATATATGA--ACATTGG-AATTA-TTAATGGTC-AACATTTTGGATCATATGCGATACATAACTAACACATAAAAA---------CAGT-TATTATA-TT-TACATTTTTGT-GTGTCAAGAGT-ATTCTGC-AATA-AAC-ACT-CCAT-AATTTCTGCGTAAA-GC-TT-CCTCCTTTTAATATCAGA-CTCAAATGGAAAAGGAAGCAAAG--CGGC-TTCTTCAAAATGTT-CGCGATCGTAAT-C-AGAGGAGA-ATTAAAgg
gi|6 : gatGA-TTTTAAAAGTTTG-GACAGTGAGTA---AATTGGA-AAACTTGATCTAAA-A-TGTCTG-ATAACAGGT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAT-GCCTCTCTACTTT-TTTTTTTT-----CC-AAAAGGGCC-ACATGTA--TTGCAA-GCTGGT-TGTAAACCTTATCAACGT-ATATCAAACACCACAAATTCA-TGCATAAA-AATAA--TTTT--G-AAGCTCCTC--CGGAGAATGGATCCACAT-AGCATA-TCG-AAGACTCTGGCC-TCAAAGCTGTGCTATCCCAACTTTAG-ATCAGGATGAA
gi|7 : ACCCTT--GTGTCCTGTGTAGCATAT--GCTAC-T-GAAAATAAATAATGCGGCT-GA-TTCATTTTTTATTATGTTTTA-AAGGAAT-ATCTA---ACTTTGAAATGAACTGTCATATGTTTGACT-TGCTAGGTGTTCGTTTC--------------TAAC-TTGA-CTAACACATACTTTGTTTA--CGTA-CA-TAGAC-GCA-AC-----------GTCACCG-CGT-GCTC-AGGTTTATAGATTT-ATTGATAT-ATCTAGGGTTAAC--TTAAGAT
gi|8 : TA-AT--GACAA---GTTTGCTTATAATA-AAACTGTAAATTGTTGATAAAAAGTTGGCTTAAATTG-AATGT-TTCTTTACAT-AT-GACATTC--AGCTTATTCGGTG
gi|9 : AA-TTGA-TACA-GAACTTGTTAAAAA--A-A---TATTCTTGAA-ATTTA-TATGTT--G--CATATTTGAT-TACATCGGTTATT-AA--GTTTTTG-TATTTAT
Alignments
lowQualScore : 11 111 1111111111 11 1 222222 111 111 1 1 1111 111 1 1 2222222222 111 1111 11 11 111 22222 111 55555555555 22222 1 1 111 1 1111 1111 11111 111 11 2222 1
lowQualScore : 3 1 7 6 0 8 8 88 666 88 5 8 11 0 8 444 3 8 8 0 7777777777 8 8 8 99 33 8 0 8 0 333333 8 8 0 8 0 999 444 44 0 0 0 3 2 3 3 0 3 3 0 5 5 2222 77 5 000 0 5 5 5 99 99 3 6 6 7 0 6 3 6 7777777777 5 111 88 8 1 8 7777 8 11 8 8 11 0 0 6 99 888 6 7 33333 6 6 6 6 99 88 0 777 0 8 8 3 5 33333333333 8 8 8 8 8 8 8 00000 8 0 8 6 8 8 0 0 88 0 3 8 0 0 8 8 0 0 8 8 8 8 8 88 3 8 0 8 444 0 1 8 8 2222 8 8 6 8 77 5 5 5 5 8888 66666 6 5 5 77 5 5 5 6 555 3 3 6 8 8 8 8 3 8 0 11 4444 88 0 8 11 8 1 3
lowQualScore : . . . . . . . .. ... .. . . .. . . ... . . . . .......... . . . .. .. . . . . ...... . . . . . ... ... .. . . . . . . . . . . . . . .... .. . ... . . . . .. .. . . . . . . . . .......... . ... .. . . . .... . .. . . .. . . . .. ... . . ..... . . . . .. .. . ... . . . . . ........... . . . . . . . ..... . . . . . . . . .. . . . . . . . . . . . . . . .. . . . . ... . . . . .... . . . . .. . . . . .... ..... . . . .. . . . . ... . . . . . . . . . . .. .... .. . . .. . . .
lowQualScore : 5 7 3 7 8 0 0 88 888 88 6 0 00 8 0 000 2 0 0 8 8888888888 0 0 0 44 22 0 8 0 0 444444 0 0 8 0 8 222 000 00 8 2 0 2 5 2 2 0 2 2 8 7 7 9999 99 7 000 1 7 7 7 22 22 3 7 7 3 8 7 5 7 6666666666 0 888 88 0 0 0 0000 0 00 0 0 00 8 8 7 22 333 7 3 33333 7 7 7 7 22 88 8 000 8 0 0 8 0 22222222222 0 0 0 0 0 0 0 00000 0 8 0 0 0 0 8 8 88 8 8 0 6 8 0 0 8 8 0 0 0 0 0 88 8 0 8 0 444 0 4 0 0 0000 0 0 0 0 99 0 7 7 0 0000 77777 7 7 7 99 7 7 7 7 222 2 7 7 8 0 0 0 8 0 8 00 6666 88 8 0 66 0 7 3
consensus : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAGTTT-AAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTT-G-C-TACATCGGGTATT-AATTTTTTTTG-TATATATA-T-T-GATACAGTGGGCATTAAGTG--AAAA-ACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
Reference ( family-191 ) : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ATGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAGTTT-AAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGACTTT-G--AACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTT-G-C-TACATCGGGTATT-AATTTTTTTTG-TATATATA-T-T-GATACAGTGGGCATTAAGTG--AAAA-ACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
gi|1 : ACCCTCTAGTGCCCC-TGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-G----------T-ATCATTTTTTA-GA--AATTAT-TTA---ATTTTGAAATTAACTCTAATATGTTTAATT-TGCTAGA-GTTCATTTCATA-TATTTGCACTTAAC-TTGA-C-ACCATATGGC-AAGTTTACCT-TACCA-AAGATGGCA-GCCTCTTTGCAAAGTCACAG-CATCGCTC-AGACTTATAGATTTTCTTGAC-CCATCTA---TTAGCATTTAAAATAAGTTTAAT-GTATAAAATCTATGATAATA-GTTT-AAGAAAGGGTTAAATTT-GACATGTAACATACAAGATACGTAAA-TTAAATACAGACTTT-T--GACAA--A-A---TGTTCTTGAA-ATT-A-TATGTT--G--CATACTT-G-C-CTC-TCGGGTATT-AATTTT-TTTG-TATATTTA-TAT-GATACAGTGGGCATTAAGTG---AAA-ACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTTAAAACT--GAGAATAAG-TTTATCT-A--AAACATTTGGA-AT--GACAA---GTTTGCTTATAATCAAAACTGTTAA-TTTTGATAAAAAGTTGGC-----TTGAAATGT-TTATTTACAT-AT-GACATTC--AGCTTTATCGATGTATCATATATGGT-ACATTGGGAATTAATTAATGGTCTC-CATTTTGGAT-ATATGC-AT-CAGAACCAA-ACATGAAAAAT--------AGT-AAT-ATATTT-T-CATTTT-AT-GTGC-----GT-A-TTTGC-A-TAGAAC-ACTCCCGTTAATTTCTGC-TAAATGCTTTTCCTC-TTTTAATATCAGG-ATCAAACTGG-AAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-ATAC-AG-GGAGATATTAATTTGATTTTTAAAAGTTTGCAATAATGAATATAAAATTGGGGAAATCTGATCTAAAGA-TTTA-T-ATAACA--T-GATTCTAAAACTGAGAATGTTCCT-TTGTCCTGC-ATA-A-TGTAGCCCCTCTCCACGTT-TTTTTTTTTTTCCCC-AAAAGGGCTAACAT-TA--TTGC-A-GCT-GT-TGC-ACTCTTATCAACGT-ATATCAAACACATTAAA-TTATTG-ATAAACAATAA--TTTTTGAAAAGCTCCTC-TCGG-GAATGGATCCACAC-AGTATATTCGAAGGACTCTGGCCTTCC-AG-TGTGCTAT-CCAACTTTAGAATCAGGATGAA
gi|10 : aattGTAG-CCCTCTCCCC----CTTTTTTT-----CG-GAGAGGGTT-ACAT-TA--TTGC-A-GCT-ACATGT-A----TATACATGT-ATAT
gi|11 : aaAAACATACAAGGTATGTAAA-TTAA-TACAGGGTTT-G--GAAAAACA-A---TATTCTTGAA-ATT-A-TAT
gi|12 : GACTCTGGCCTTCCAAG-TGTGCTATCCCATTTTTAAAATCAGGATGAATa
gi|13 : TAACCATCTAGTGCCCCATGTAGCATATATGCTACAT-gg
gi|14 : gatTA--CTGCAATA-A-TGTAG-CCCTCTCC
gi|15 : ttcG--CTGCAATA-A-TGTAG-CCCTCTCCcatgtat
gi|16 : cAAAGGGTT-ACAT-TA--TTGC-A-GCT-tactgttta
gi|2 : gTAACCCTCAAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CG-CT-GA-GTCATTTT--GTCATTTTCTA-AA--AATTAT-CTT---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTTCGCTTAAC-TTGA-C-ACCATATGGC-ATGTTTACCCGTACCA-AAAATGGCA-GC-TCTT-G--AAGTCACCG-CATCGCTC-A-ACTTATAGATTT-CT-GAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTAT-ATAATAAGTTT-AAGAAATGGTTAGATTTTGACATGAAACATACA-GATATGTAAAATTAA--ACA-ACTTT-G--AACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTT-G-C-TACATCGG-TATT-AATTTTTTTTG-TATATATA-T-T-GATACA-TGGGCATTGAGTG--AAAA-ACGCA-GCTCAGTTT-GCTCATG----GTATTTC-TGATCAGGATAAATAAGTTAAAAACT--GAGAATAAG-TTTATCT-A--AAACATTAGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTAGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGTTC-T-CATTTTGGAT-ATATGC-ATGGAGAACCAACACATAAAAAATAAAAAAATAGT-TAT-ATA-TT-T-CATTTT-AT-ATGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGATA-ATTGAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATTTGATCTAAA-A-TGTA-G-ATAACAG-T-GATTCTAAAACTGGGAATGCTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTTATTTTTTTT-----CA-AAAAGGGCT-ACAT-TA--CTAC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACA-CAAA-TCA-AG-ATAAA-AA-AACCTTTT--G-AAGCCCCTC-TCGGAGAATGGATCCACAC-AGCATATTTG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAATacatgt
gi|3 : AACCCTCTAGTGCCCCATGTTACATAT-CGCTACATTGAAAA--AATGAT-CGGCTTGATGTC---TTT-ATCATTTTTTCTAA--AATTATTCTA---A-TTTGAAATTAACTCTAATATGTTTGATTCTGCATGA-GTTCATTTCATA-T--TT-CG-TTAACCTTGAAC-ACCATATGGCCGT-TTTAC--GTACCAGAAGATGGCAAGCCTCTTTG---TGTCAACG-CATCGCTC-AGAACTAC-GATTT-CTTGAC-C-ATCTA---TTAG-ATTTCAAATGAGCTTAATCGTATAAA-TCTATGATAATAAGTTTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--ATA---T-TTCTTGAA--TT-A-T-TGTT--GGGCATATTTTG-CCTACATCGG-TATT-AATTTTTTTGGATAT-TATACT-T-GATACACTGGGCATTAAGTG--AAAAAACGCA-GCTCAATTT-GCTCATG----GTATATC-TGATCTTGAAAAATAAGTTAAAAATG--AAGAATAAG-TTTATTTAA--AAACA-TTGTA-AT--GGCAAT--GTTTGCTAATAATC--AACTGTTAATTTT--ATAAAAAGTTGGC-----TTG-AATGT-TTATTTA-AT-ATGGACATTC--AGCTTATTCGA-GTATCCTATATGATAACATTGGGAATTAATTAATGGTC-A-CATTTTGG---ATATGC-ATACAGAACCAACACATAAA----AA-----CATTCTAT-ATA-TTAT-CATTTT-GTGGTGC-----GTCATTTTGCTA-TAGAACAACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGGAATCAAACTGGAAAGGAAGC-AAGGTCGGC-TTC-T-AAAA-GTT-CGCAATCTT-AT-CTAG-GGAGA-ATT-AATAGA-TTTTACCCG-TTG-GATAATGAATAT--AATTGGG--AATATGATCTAAA-ACTGTT-GCATAA-AG-TGGATTCTAAA----------------TTG--CTTCAATA-ATTGTAG-CCTCCTCCATGTC-TTTTTTTT-----CC-AAAAAGGCT-ACAT-TACTCTGC-A-GCT-GT-TGTAACCCTTATC-ATATAATATCAAACACACCAAA-TCA-TG-AT-AA-AATAA--TTTT--GAAAGCTCCTCATCGGAGTATGGATCCACAC-AGCATATTCA-GGGAC-CTGGCCCTCCAAGCTGTGCTATCC--ACTTTAGA--TAGAATGAa
gi|4 : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CAGCT-GA-GTCATTTTT-ATCAT-----A-AG--AATTAT-CTATAAACTTTGAAATTAACTCTAATATGTTTGATT-TTCTAGA-GTTCATTTCATAAT--TTGTGCTTAAC-TTGA-C-ATGATATGGC-GTGTTTACC-GTACCA-A-GATGGCA-GCCTCTTTG--ATGTCACCGGCATCGCTCCAGACTTATAGATTT-CTTGAC---ATCTA---TTAGTATT-AAAATTAGTTTAAT-GTATAAAATCTATGATA-TAAGTTT-AAGAA-GGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTA--TACAGGCTTTTG--AACAA--A-A---TATTCTTGAA-ATT-A-TATGTT--G--CATATTTTG-C-TACATCGGGTATT-TAATTTTTTTG-TATA----------ATACAGTGGGCATTAAGTG--AAAA--CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AA-CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTAAATTGTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGGTGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACA-AACCAACACATAAA----AA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTT-C-ATTAGTAC-ACT-CCATTAATTTCTGCGTAAATGC--TTCCTCTTTTTAATATCAGG-ATCAAACTGG---------AAAGGTCGGCTTTC-TC--AATGTTCCGCGATCTT-AT-C-AG-GGAG--ATTAAATAAA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGATATCTGATCTAAA-A-TGTT-G-ATAACAG-T-GATTCTGAATCTGAGAATGTTCCCTTTG--CTGC-ATATA-TGTAG-TCCTCTCCAC-----CTTTTTT-----CCGAAAAAGGCT-ACAT-TA--TTGC-AGGCT-GT-AGT-A-CCTTATCAA-GT-ATATCAAACA-AACAAA-TCA-TG-ATGAA-AATAA--TTTT--G-AAGCTCCTC-TCGGAGAATGGATTCA-ACAAGCAT-TTCG-AGGACTCTGGCCTTCCAAG-TGTGCGATCCCAACTTTAGAATCAGGATGAAT
gi|5 : tctTATGTAAA-T-AA-TACAGACTTTTG--AACAA--A-AAAGTATCTTCGAACATT-AATATGTTAGG--CATATTT-G-C-TAC-TCGGGTATTTAATTTTTGTTA-TAT---TA-C-TAGATACTGTGGGCATTAAGTGCGAAAA-ACGCAAGCTCATTTTTGCTCATGCGTGGTATTTCATGATCTTAAAAAATTAGTTAAAAACTCAAAGAATAAGCTTTACTT-ATAAAACATTTGTACATCGAACAAAGTGTCTG--TATAATC-AA-TTTTTAATTTT-GATAAAA-GTGGGCC----TTG-AATGTCTTATTTACATTAT-GAAATTCCAAGCTTAT-CGATGTATCATATATGA--ACATTGG-AATTA-TTAATGGTC-AACATTTTGGATCATATGCGATACATAACTAACACATAAAAA---------CAGT-TATTATA-TT-TACATTTTTGT-GTGTCAAGAGT-ATTCTGC-AATA-AAC-ACT-CCAT-AATTTCTGCGTAAA-GC-TT-CCTCCTTTTAATATCAGA-CTCAAATGGAAAAGGAAGCAAAG--CGGC-TTCTTCAAAATGTT-CGCGATCGTAAT-C-AGAGGAGA-ATTAAAgg
gi|6 : gatGA-TTTTAAAAGTTTG-GACAGTGAGTA---AATTGGA-AAACTTGATCTAAA-A-TGTCTG-ATAACAGGT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAT-GCCTCTCTACTTT-TTTTTTTT-----CC-AAAAGGGCC-ACATGTA--TTGCAA-GCTGGT-TGTAAACCTTATCAACGT-ATATCAAACACCACAAATTCA-TGCATAAA-AATAA--TTTT--G-AAGCTCCTC--CGGAGAATGGATCCACAT-AGCATA-TCG-AAGACTCTGGCC-TCAAAGCTGTGCTATCCCAACTTTAG-ATCAGGATGAA
gi|7 : ACCCTT--GTGTCCTGTGTAGCATAT--GCTAC-T-GAAAATAAATAATGCGGCT-GA-TTCATTTTTTATTATGTTTTA-AAGGAAT-AT-CTA---ACTTTGAAATGAACTGTCATATGTTTGACT-TGCTAGGTGTTCGTTTC--------------TAAC-TTGA-CTAACACATACT-TTGTTTA--CGTA-CA-TAGAC-GCA-AC-----------GTCACCG-CGT-GCTC-AGGTTTATAGATTT-ATTGATAT-ATCTAGGGTTAAC--TTAAGAT
gi|8 : TA-AT--GACAA---GTTTGCTTATAATA-AAACTGTAAATTGTTGATAAAAAGTTGGCTTAAATTG-AATGT-TTCTTTACAT-AT-GACATTC--AGCTTATTCGGTG
gi|9 : AA-TTGA-TACAGAACTT-GTTAAAAA--A-A---TATTCTTGAA-ATTTA-TATGTT--G--CATATTT-GAT-TACATCGGTTATT-AA--GTTTTTG-TATTTAT
Alignments
lowQualScore : 11 111 1111111111 11 111111 111 111 1 1 1111 111 11 1 1 22222222222 111 1111 11 11 111 22222 111 55555555555 22222 1 1 111 1 1111 1111 11111 111 11 2222 1
lowQualScore : 3 1 7 6 0 8 8 88 666 88 5 8 11 0 8 444 3 8 8 0 7777777777 8 8 8 99 33 8 0 8 5 333333 8 8 0 8 0 999 444 44 0 0 0 3 2 3 3 0 3 3 0 5 5 4 2222 77 000 5 5 5 5 88 6 6 3 7 2 6 1 66666666666 5 999 0 8 1 8 7777 8 11 8 8 11 0 0 6 99 888 6 7 33333 6 6 6 6 99 88 0 777 0 8 8 3 5 33333333333 8 8 8 8 8 8 8 00000 8 0 8 6 8 8 0 0 88 0 3 8 0 0 8 8 0 0 8 8 8 8 8 88 3 8 0 8 444 0 1 8 8 2222 8 8 6 8 77 5 5 5 5 8888 66666 6 5 5 77 5 5 5 6 555 3 3 6 8 8 8 8 3 8 0 11 4444 88 0 8 11 8 1 3
lowQualScore : . . . . . . . .. ... .. . . .. . . ... . . . . .......... . . . .. .. . . . . ...... . . . . . ... ... .. . . . . . . . . . . . . . . .... .. ... . . . . .. . . . . . . . ........... . ... . . . . .... . .. . . .. . . . .. ... . . ..... . . . . .. .. . ... . . . . . ........... . . . . . . . ..... . . . . . . . . .. . . . . . . . . . . . . . . .. . . . . ... . . . . .... . . . . .. . . . . .... ..... . . . .. . . . . ... . . . . . . . . . . .. .... .. . . .. . . .
lowQualScore : 5 7 3 7 8 0 0 88 888 88 6 0 00 8 0 000 2 0 0 8 8888888888 0 0 0 44 22 0 8 0 0 444444 0 0 8 0 8 222 000 00 8 2 0 2 5 2 2 0 2 2 8 7 7 0 9999 99 000 7 7 7 7 33 7 7 3 3 5 7 7 11111111111 0 888 8 0 0 0 0000 0 00 0 0 00 8 8 7 22 333 7 3 33333 7 7 7 7 22 88 8 000 8 0 0 8 0 22222222222 0 0 0 0 0 0 0 00000 0 8 0 0 0 0 8 8 88 8 8 0 6 8 0 0 8 8 0 0 0 0 0 88 8 0 8 0 444 0 4 0 0 0000 0 0 0 0 99 0 7 7 0 0000 77777 7 7 7 99 7 7 7 7 222 2 7 7 8 0 0 0 8 0 8 00 6666 88 8 0 66 0 7 3
consensus : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTTTGTATA-TATA-T-T-GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
Reference ( family-191 ) : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTTTGTATA-TATA-T-T-GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
gi|1 : ACCCTCTAGTGCCCC-TGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-G----------T-ATCATTTTTTA-GA--AATTAT-TTA---ATTTTGAAATTAACTCTAATATGTTTAATT-TGCTAGA-GTTCATTTCATA-TATTTGCACTTAAC-TTGA-C-ACCATATGGC-AAGTTTACCT-TACCA-AAGATGGCA-GCCTCTTTGCAAAGTCACAG-CATCGCTC-AGACTTATAGATTTTCTTGAC-CCATCTA---TTAGCATTTAAAATAAGTTTAAT-GTATAAAATCTATGATAATA-G-TTTAAGAAAGGGTTAAATTT-GACATGTAACATACAAGATACGTAAA-TTAAATACAGACTTT-T--GACAA--AA---TG-TTCTTGAA-ATT-A-TATGTT--GCATA-CTT-G-CCTC-TCGGGTATT-AATTTT-TTTGTATA-TTTA-TAT-GATACAGTGGGCATTAAGTG---AAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTTAAAACT--GAGAATAAG-TTTATCT-A--AAACATTTGGA-AT--GACAA---GTTTGCTTATAATCAAAACTGTTAA-TTTTGATAAAAAGTTGGC-----TTGAAATGT-TTATTTACAT-AT-GACATTC--AGCTTTATCGATGTATCATATATGGT-ACATTGGGAATTAATTAATGGTCTC-CATTTTGGAT-ATATGC-AT-CAGAACCAA-ACATGAAAAAT--------AGT-AAT-ATATTT-T-CATTTT-AT-GTGC-----GT-A-TTTGC-A-TAGAAC-ACTCCCGTTAATTTCTGC-TAAATGCTTTTCCTC-TTTTAATATCAGG-ATCAAACTGG-AAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-ATAC-AG-GGAGATATTAATTTGATTTTTAAAAGTTTGCAATAATGAATATAAAATTGGGGAAATCTGATCTAAAGA-TTTA-T-ATAACA--T-GATTCTAAAACTGAGAATGTTCCT-TTGTCCTGC-ATA-A-TGTAGCCCCTCTCCACGTT-TTTTTTTTTTTCCCC-AAAAGGGCTAACAT-TA--TTGC-A-GCT-GT-TGC-ACTCTTATCAACGT-ATATCAAACACATTAAA-TTATTG-ATAAACAATAA--TTTTTGAAAAGCTCCTC-TCGG-GAATGGATCCACAC-AGTATATTCGAAGGACTCTGGCCTTCC-AG-TGTGCTAT-CCAACTTTAGAATCAGGATGAA
gi|10 : aattGTAG-CCCTCTCCCC----CTTTTTTT-----CG-GAGAGGGTT-ACAT-TA--TTGC-A-GCT-ACATGT-A----TATACATGT-ATAT
gi|11 : aaAAACATACAAGGTATGTAAA-TTAA-TACAGGGTTT-G--GAAAAACAA---TA-TTCTTGAA-ATT-A-TAT
gi|12 : GACTCTGGCCTTCCAAG-TGTGCTATCCCATTTTTAAAATCAGGATGAATa
gi|13 : TAACCATCTAGTGCCCCATGTAGCATATATGCTACAT-gg
gi|14 : gatTA--CTGCAATA-A-TGTAG-CCCTCTCC
gi|15 : ttcG--CTGCAATA-A-TGTAG-CCCTCTCCcatgtat
gi|16 : cAAAGGGTT-ACAT-TA--TTGC-A-GCT-tactgttta
gi|2 : gTAACCCTCAAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CG-CT-GA-GTCATTTT--GTCATTTTCTA-AA--AATTAT-CTT---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTTCGCTTAAC-TTGA-C-ACCATATGGC-ATGTTTACCCGTACCA-AAAATGGCA-GC-TCTT-G--AAGTCACCG-CATCGCTC-A-ACTTATAGATTT-CT-GAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTAT-ATAATAAG-TTTAAGAAATGGTTAGATTTTGACATGAAACATACA-GATATGTAAAATTAA--ACAA-CTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGG-TATT-AATTTTTTTTGTATA-TATA-T-T-GATACA-TGGGCATTGAGTG--AAAAACGCA-GCTCAGTTT-GCTCATG----GTATTTC-TGATCAGGATAAATAAGTTAAAAACT--GAGAATAAG-TTTATCT-A--AAACATTAGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTAGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGTTC-T-CATTTTGGAT-ATATGC-ATGGAGAACCAACACATAAAAAATAAAAAAATAGT-TAT-ATA-TT-T-CATTTT-AT-ATGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGATA-ATTGAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATTTGATCTAAA-A-TGTA-G-ATAACAG-T-GATTCTAAAACTGGGAATGCTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTTATTTTTTTT-----CA-AAAAGGGCT-ACAT-TA--CTAC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACA-CAAA-TCA-AG-ATAAA-AA-AACCTTTT--G-AAGCCCCTC-TCGGAGAATGGATCCACAC-AGCATATTTG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAATacatgt
gi|3 : AACCCTCTAGTGCCCCATGTTACATAT-CGCTACATTGAAAA--AATGAT-CGGCTTGATGTC---TTT-ATCATTTTTTCTAA--AATTATTCTA---A-TTTGAAATTAACTCTAATATGTTTGATTCTGCATGA-GTTCATTTCATA-T--TT-CG-TTAACCTTGAAC-ACCATATGGCCGT-TTTAC--GTACCAGAAGATGGCAAGCCTCTTTG---TGTCAACG-CATCGCTC-AGAACTAC-GATTT-CTTGAC-C-ATCTA---TTAG-ATTTCAAATGAGCTTAATCGTAT-AAATCTATGATAATAAGTTTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AAC-A--AA---TATTTCTTG-A-ATT-A-T-TGTTGGGCATATTTT-GCCTACATC-GGTATT-AA-TTTTTTTGGATATTATACT-T-GATACACTGGGCATTAAGTGA-AAAAACGCA-GCTCAATTT-GCTCATG----GTATATC-TGATCTTGAAAAATAAGTTAAAAATG--AAGAATAAG-TTTATTTAA--AAACA-TTGTA-AT--GGCAAT--GTTTGCTAATAATC--AACTGTTAATTTT--ATAAAAAGTTGGC-----TTG-AATGT-TTATTTA-AT-ATGGACATTC--AGCTTATTCGA-GTATCCTATATGATAACATTGGGAATTAATTAATGGTC-A-CATTTTGG---ATATGC-ATACAGAACCAACACATAAA----AA-----CATTCTAT-ATA-TTAT-CATTTT-GTGGTGC-----GTCATTTTGCTA-TAGAACAACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGGAATCAAACTGGAAAGGAAGC-AAGGTCGGC-TTC-T-AAAA-GTT-CGCAATCTT-AT-CTAG-GGAGA-ATT-AATAGA-TTTTACCCG-TTG-GATAATGAATAT--AATTGGG--AATATGATCTAAA-ACTGTT-GCATAA-AG-TGGATTCTAAA----------------TTG--CTTCAATA-ATTGTAG-CCTCCTCCATGTC-TTTTTTTT-----CC-AAAAAGGCT-ACAT-TACTCTGC-A-GCT-GT-TGTAACCCTTATC-ATATAATATCAAACACACCAAA-TCA-TG-AT-AA-AATAA--TTTT--GAAAGCTCCTCATCGGAGTATGGATCCACAC-AGCATATTCA-GGGAC-CTGGCCCTCCAAGCTGTGCTATCC--ACTTTAGA--TAGAATGAa
gi|4 : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CAGCT-GA-GTCATTTTT-ATCAT-----A-AG--AATTAT-CTATAAACTTTGAAATTAACTCTAATATGTTTGATT-TTCTAGA-GTTCATTTCATAAT--TTGTGCTTAAC-TTGA-C-ATGATATGGC-GTGTTTACC-GTACCA-A-GATGGCA-GCCTCTTTG--ATGTCACCGGCATCGCTCCAGACTTATAGATTT-CTTGAC---ATCTA---TTAGTATT-AAAATTAGTTTAAT-GTATAAAATCTATGATA-TAAG-TTTAAGAA-GGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTA--TACAGGCTTTTG--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTTTG-CTACATCGGGTATT-TAATTTTTTTGTATA-----------ATACAGTGGGCATTAAGTG--AAAA-CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AA-CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTAAATTGTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGGTGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACA-AACCAACACATAAA----AA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTT-C-ATTAGTAC-ACT-CCATTAATTTCTGCGTAAATGC--TTCCTCTTTTTAATATCAGG-ATCAAACTGG---------AAAGGTCGGCTTTC-TC--AATGTTCCGCGATCTT-AT-C-AG-GGAG--ATTAAATAAA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGATATCTGATCTAAA-A-TGTT-G-ATAACAG-T-GATTCTGAATCTGAGAATGTTCCCTTTG--CTGC-ATATA-TGTAG-TCCTCTCCAC-----CTTTTTT-----CCGAAAAAGGCT-ACAT-TA--TTGC-AGGCT-GT-AGT-A-CCTTATCAA-GT-ATATCAAACA-AACAAA-TCA-TG-ATGAA-AATAA--TTTT--G-AAGCTCCTC-TCGGAGAATGGATTCA-ACAAGCAT-TTCG-AGGACTCTGGCCTTCCAAG-TGTGCGATCCCAACTTTAGAATCAGGATGAAT
gi|5 : tctTATGTAAA-T-AA-TACAGACTTTTG--AACAA--AAAAGTA-TCTTCGAACATT-AATATGTTAGGCATA-TTT-G-CTAC-TCGGGTATTTAATTTTTGTTATAT----TA-C-TAGATACTGTGGGCATTAAGTGCGAAAAACGCAAGCTCATTTTTGCTCATGCGTGGTATTTCATGATCTTAAAAAATTAGTTAAAAACTCAAAGAATAAGCTTTACTT-ATAAAACATTTGTACATCGAACAAAGTGTCTG--TATAATC-AA-TTTTTAATTTT-GATAAAA-GTGGGCC----TTG-AATGTCTTATTTACATTAT-GAAATTCCAAGCTTAT-CGATGTATCATATATGA--ACATTGG-AATTA-TTAATGGTC-AACATTTTGGATCATATGCGATACATAACTAACACATAAAAA---------CAGT-TATTATA-TT-TACATTTTTGT-GTGTCAAGAGT-ATTCTGC-AATA-AAC-ACT-CCAT-AATTTCTGCGTAAA-GC-TT-CCTCCTTTTAATATCAGA-CTCAAATGGAAAAGGAAGCAAAG--CGGC-TTCTTCAAAATGTT-CGCGATCGTAAT-C-AGAGGAGA-ATTAAAgg
gi|6 : gatGA-TTTTAAAAGTTTG-GACAGTGAGTA---AATTGGA-AAACTTGATCTAAA-A-TGTCTG-ATAACAGGT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAT-GCCTCTCTACTTT-TTTTTTTT-----CC-AAAAGGGCC-ACATGTA--TTGCAA-GCTGGT-TGTAAACCTTATCAACGT-ATATCAAACACCACAAATTCA-TGCATAAA-AATAA--TTTT--G-AAGCTCCTC--CGGAGAATGGATCCACAT-AGCATA-TCG-AAGACTCTGGCC-TCAAAGCTGTGCTATCCCAACTTTAG-ATCAGGATGAA
gi|7 : ACCCTT--GTGTCCTGTGTAGCATAT--GCTAC-T-GAAAATAAATAATGCGGCT-GA-TTCATTTTTTATTATGTTTTA-AAGGAAT-AT-CTA---ACTTTGAAATGAACTGTCATATGTTTGACT-TGCTAGGTGTTCGTTTC--------------TAAC-TTGA-CTAACACATACT-TTGTTTA--CGTA-CA-TAGAC-GCA------------ACGTCACCG-CGT-GCTC-AGGTTTATAGATTT-ATTGATAT-ATCTAGGGTTAAC--TTAAGAT
gi|8 : TA-AT--GACAA---GTTTGCTTATAATA-AAACTGTAAATTGTTGATAAAAAGTTGGCTTAAATTG-AATGT-TTCTTTACAT-AT-GACATTC--AGCTTATTCGGTG
gi|9 : AA-TTGA-TACAGAACTT-GTTAAAAA--AA---TA-TTCTTGAA-ATTTA-TATGTT--GCATA-TTT-GATTACATCGGTTATT-AA--GTTTTTGTATT-TAT
Alignments
lowQualScore : 11 111 1111111111 11 111111 111 111 1 1 1111 111 11 1 1 22222222222 111 1111 11 11 111 22222 111 55555555555 22222 1 1 111 1 1111 1111 11111 111 11 2222 1
lowQualScore : 3 1 7 6 0 8 8 88 666 88 5 8 11 0 8 444 3 8 8 0 7777777777 8 8 8 99 33 8 0 8 5 333333 8 8 0 8 0 999 444 44 0 0 0 3 2 3 3 0 3 3 0 5 5 4 2222 77 000 5 5 5 5 88 6 6 3 7 2 6 1 66666666666 5 999 0 8 1 8 7777 8 11 8 8 11 0 0 6 99 888 6 7 33333 6 6 6 6 99 88 0 777 0 8 8 3 5 33333333333 8 8 8 8 8 8 8 00000 8 0 8 6 8 8 0 0 88 0 3 8 0 0 8 8 0 0 8 8 8 8 8 88 3 8 0 8 444 0 1 8 8 2222 8 8 6 8 77 5 5 5 5 8888 66666 6 5 5 77 5 5 5 6 555 3 3 6 8 8 8 8 3 8 0 11 4444 88 0 8 11 8 1 3
lowQualScore : . . . . . . . .. ... .. . . .. . . ... . . . . .......... . . . .. .. . . . . ...... . . . . . ... ... .. . . . . . . . . . . . . . . .... .. ... . . . . .. . . . . . . . ........... . ... . . . . .... . .. . . .. . . . .. ... . . ..... . . . . .. .. . ... . . . . . ........... . . . . . . . ..... . . . . . . . . .. . . . . . . . . . . . . . . .. . . . . ... . . . . .... . . . . .. . . . . .... ..... . . . .. . . . . ... . . . . . . . . . . .. .... .. . . .. . . .
lowQualScore : 5 7 3 7 8 0 0 88 888 88 6 0 00 8 0 000 2 0 0 8 8888888888 0 0 0 44 22 0 8 0 0 444444 0 0 8 0 8 222 000 00 8 2 0 2 5 2 2 0 2 2 8 7 7 0 9999 99 000 7 7 7 7 33 7 7 3 3 5 7 7 11111111111 0 888 8 0 0 0 0000 0 00 0 0 00 8 8 7 22 333 7 3 33333 7 7 7 7 22 88 8 000 8 0 0 8 0 22222222222 0 0 0 0 0 0 0 00000 0 8 0 0 0 0 8 8 88 8 8 0 6 8 0 0 8 8 0 0 0 0 0 88 8 0 8 0 444 0 4 0 0 0000 0 0 0 0 99 0 7 7 0 0000 77777 7 7 7 99 7 7 7 7 222 2 7 7 8 0 0 0 8 0 8 00 6666 88 8 0 66 0 7 3
consensus : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTTTGTATA-TATA-T-T-GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
Reference ( family-191 ) : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTTTGTATA-TATA-T-T-GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
gi|1 : ACCCTCTAGTGCCCC-TGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-G----------T-ATCATTTTTTA-GA--AATTAT-TTA---ATTTTGAAATTAACTCTAATATGTTTAATT-TGCTAGA-GTTCATTTCATA-TATTTGCACTTAAC-TTGA-C-ACCATATGGC-AAGTTTACCT-TACCA-AAGATGGCA-GCCTCTTTGCAAAGTCACAG-CATCGCTC-AGACTTATAGATTTTCTTGAC-CCATCTA---TTAGCATTTAAAATAAGTTTAAT-GTATAAAATCTATGATAATA-G-TTTAAGAAAGGGTTAAATTT-GACATGTAACATACAAGATACGTAAA-TTAAATACAGACTTT-T--GACAA--AA---TG-TTCTTGAA-ATT-A-TATGTT--GCATA-CTT-G-CCTC-TCGGGTATT-AATTTT-TTTGTATA-TTTA-TAT-GATACAGTGGGCATTAAGTG---AAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTTAAAACT--GAGAATAAG-TTTATCT-A--AAACATTTGGA-AT--GACAA---GTTTGCTTATAATCAAAACTGTTAA-TTTTGATAAAAAGTTGGC-----TTGAAATGT-TTATTTACAT-AT-GACATTC--AGCTTTATCGATGTATCATATATGGT-ACATTGGGAATTAATTAATGGTCTC-CATTTTGGAT-ATATGC-AT-CAGAACCAA-ACATGAAAAAT--------AGT-AAT-ATATTT-T-CATTTT-AT-GTGC-----GT-A-TTTGC-A-TAGAAC-ACTCCCGTTAATTTCTGC-TAAATGCTTTTCCTC-TTTTAATATCAGG-ATCAAACTGG-AAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-ATAC-AG-GGAGATATTAATTTGATTTTTAAAAGTTTGCAATAATGAATATAAAATTGGGGAAATCTGATCTAAAGA-TTTA-T-ATAACA--T-GATTCTAAAACTGAGAATGTTCCT-TTGTCCTGC-ATA-A-TGTAGCCCCTCTCCACGTT-TTTTTTTTTTTCCCC-AAAAGGGCTAACAT-TA--TTGC-A-GCT-GT-TGC-ACTCTTATCAACGT-ATATCAAACACATTAAA-TTATTG-ATAAACAATAA--TTTTTGAAAAGCTCCTC-TCGG-GAATGGATCCACAC-AGTATATTCGAAGGACTCTGGCCTTCC-AG-TGTGCTAT-CCAACTTTAGAATCAGGATGAA
gi|10 : aattGTAG-CCCTCTCCCC----CTTTTTTT-----CG-GAGAGGGTT-ACAT-TA--TTGC-A-GCT-ACATGT-A----TATACATGT-ATAT
gi|11 : aaAAACATACAAGGTATGTAAA-TTAA-TACAGGGTTT-G--GAAAAACAA---TA-TTCTTGAA-ATT-A-TAT
gi|12 : GACTCTGGCCTTCCAAG-TGTGCTATCCCATTTTTAAAATCAGGATGAATa
gi|13 : TAACCATCTAGTGCCCCATGTAGCATATATGCTACAT-gg
gi|14 : gatTA--CTGCAATA-A-TGTAG-CCCTCTCC
gi|15 : ttcG--CTGCAATA-A-TGTAG-CCCTCTCCcatgtat
gi|16 : cAAAGGGTT-ACAT-TA--TTGC-A-GCT-tactgttta
gi|2 : gTAACCCTCAAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CG-CT-GA-GTCATTTT--GTCATTTTCTA-AA--AATTAT-CTT---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTTCGCTTAAC-TTGA-C-ACCATATGGC-ATGTTTACCCGTACCA-AAAATGGCA-GC-TCTT-G--AAGTCACCG-CATCGCTC-A-ACTTATAGATTT-CT-GAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTAT-ATAATAAG-TTTAAGAAATGGTTAGATTTTGACATGAAACATACA-GATATGTAAAATTAA--ACAA-CTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGG-TATT-AATTTTTTTTGTATA-TATA-T-T-GATACA-TGGGCATTGAGTG--AAAAACGCA-GCTCAGTTT-GCTCATG----GTATTTC-TGATCAGGATAAATAAGTTAAAAACT--GAGAATAAG-TTTATCT-A--AAACATTAGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTAGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGTTC-T-CATTTTGGAT-ATATGC-ATGGAGAACCAACACATAAAAAATAAAAAAATAGT-TAT-ATA-TT-T-CATTTT-AT-ATGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGATA-ATTGAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATTTGATCTAAA-A-TGTA-G-ATAACAG-T-GATTCTAAAACTGGGAATGCTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTTATTTTTTTT-----CA-AAAAGGGCT-ACAT-TA--CTAC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACA-CAAA-TCA-AG-ATAAA-AA-AACCTTTT--G-AAGCCCCTC-TCGGAGAATGGATCCACAC-AGCATATTTG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAATacatgt
gi|3 : AACCCTCTAGTGCCCCATGTTACATAT-CGCTACATTGAAAA--AATGAT-CGGCTTGATGTC---TTT-ATCATTTTTTCTAA--AATTATTCTA---A-TTTGAAATTAACTCTAATATGTTTGATTCTGCATGA-GTTCATTTCATA-T--TT-CG-TTAACCTTGAAC-ACCATATGGCCGT-TTTAC--GTACCAGAAGATGGCAAGCCTCTTTG---TGTCAACG-CATCGCTC-AGAACTAC-GATTT-CTTGAC-C-ATCTA---TTAG-ATTTCAAATGAGCTTAATCGTAT-AAATCTATGATAATAAGTTTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AAC-A--AA---TATTTCTTG-A-ATT-A-T-TGTTGGGCATATTTT-GCCTACATC-GGTATT-AA-TTTTTTTGGATATTATACT-T-GATACACTGGGCATTAAGTGA-AAAAACGCA-GCTCAATTT-GCTCATG----GTATATC-TGATCTTGAAAAATAAGTTAAAAATG--AAGAATAAG-TTTATTTAA--AAACA-TTGTA-AT--GGCAAT--GTTTGCTAATAATC--AACTGTTAATTTT--ATAAAAAGTTGGC-----TTG-AATGT-TTATTTA-AT-ATGGACATTC--AGCTTATTCGA-GTATCCTATATGATAACATTGGGAATTAATTAATGGTC-A-CATTTTGG---ATATGC-ATACAGAACCAACACATAAA----AA-----CATTCTAT-ATA-TTAT-CATTTT-GTGGTGC-----GTCATTTTGCTA-TAGAACAACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGGAATCAAACTGGAAAGGAAGC-AAGGTCGGC-TTC-T-AAAA-GTT-CGCAATCTT-AT-CTAG-GGAGA-ATT-AATAGA-TTTTACCCG-TTG-GATAATGAATAT--AATTGGG--AATATGATCTAAA-ACTGTT-GCATAA-AG-TGGATTCTAAA----------------TTG--CTTCAATA-ATTGTAG-CCTCCTCCATGTC-TTTTTTTT-----CC-AAAAAGGCT-ACAT-TACTCTGC-A-GCT-GT-TGTAACCCTTATC-ATATAATATCAAACACACCAAA-TCA-TG-AT-AA-AATAA--TTTT--GAAAGCTCCTCATCGGAGTATGGATCCACAC-AGCATATTCA-GGGAC-CTGGCCCTCCAAGCTGTGCTATCC--ACTTTAGA--TAGAATGAa
gi|4 : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CAGCT-GA-GTCATTTTT-ATCAT-----A-AG--AATTAT-CTATAAACTTTGAAATTAACTCTAATATGTTTGATT-TTCTAGA-GTTCATTTCATAAT--TTGTGCTTAAC-TTGA-C-ATGATATGGC-GTGTTTACC-GTACCA-A-GATGGCA-GCCTCTTTG--ATGTCACCGGCATCGCTCCAGACTTATAGATTT-CTTGAC---ATCTA---TTAGTATT-AAAATTAGTTTAAT-GTATAAAATCTATGATA-TAAG-TTTAAGAA-GGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTA--TACAGGCTTTTG--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTTTG-CTACATCGGGTATT-TAATTTTTTTGTATA-----------ATACAGTGGGCATTAAGTG--AAAA-CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AA-CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTAAATTGTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGGTGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACA-AACCAACACATAAA----AA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTT-C-ATTAGTAC-ACT-CCATTAATTTCTGCGTAAATGC--TTCCTCTTTTTAATATCAGG-ATCAAACTGG---------AAAGGTCGGCTTTC-TC--AATGTTCCGCGATCTT-AT-C-AG-GGAG--ATTAAATAAA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGATATCTGATCTAAA-A-TGTT-G-ATAACAG-T-GATTCTGAATCTGAGAATGTTCCCTTTG--CTGC-ATATA-TGTAG-TCCTCTCCAC-----CTTTTTT-----CCGAAAAAGGCT-ACAT-TA--TTGC-AGGCT-GT-AGT-A-CCTTATCAA-GT-ATATCAAACA-AACAAA-TCA-TG-ATGAA-AATAA--TTTT--G-AAGCTCCTC-TCGGAGAATGGATTCA-ACAAGCAT-TTCG-AGGACTCTGGCCTTCCAAG-TGTGCGATCCCAACTTTAGAATCAGGATGAAT
gi|5 : tctTATGTAAA-T-AA-TACAGACTTTTG--AACAA--AAAAGTA-TCTTCGAACATT-AATATGTTAGGCATA-TTT-G-CTAC-TCGGGTATTTAATTTTTGTTATAT----TA-C-TAGATACTGTGGGCATTAAGTGCGAAAAACGCAAGCTCATTTTTGCTCATGCGTGGTATTTCATGATCTTAAAAAATTAGTTAAAAACTCAAAGAATAAGCTTTACTT-ATAAAACATTTGTACATCGAACAAAGTGTCTG--TATAATC-AA-TTTTTAATTTT-GATAAAA-GTGGGCC----TTG-AATGTCTTATTTACATTAT-GAAATTCCAAGCTTAT-CGATGTATCATATATGA--ACATTGG-AATTA-TTAATGGTC-AACATTTTGGATCATATGCGATACATAACTAACACATAAAAA---------CAGT-TATTATA-TT-TACATTTTTGT-GTGTCAAGAGT-ATTCTGC-AATA-AAC-ACT-CCAT-AATTTCTGCGTAAA-GC-TT-CCTCCTTTTAATATCAGA-CTCAAATGGAAAAGGAAGCAAAG--CGGC-TTCTTCAAAATGTT-CGCGATCGTAAT-C-AGAGGAGA-ATTAAAgg
gi|6 : gatGA-TTTTAAAAGTTTG-GACAGTGAGTA---AATTGGA-AAACTTGATCTAAA-A-TGTCTG-ATAACAGGT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAT-GCCTCTCTACTTT-TTTTTTTT-----CC-AAAAGGGCC-ACATGTA--TTGCAA-GCTGGT-TGTAAACCTTATCAACGT-ATATCAAACACCACAAATTCA-TGCATAAA-AATAA--TTTT--G-AAGCTCCTC--CGGAGAATGGATCCACAT-AGCATA-TCG-AAGACTCTGGCC-TCAAAGCTGTGCTATCCCAACTTTAG-ATCAGGATGAA
gi|7 : ACCCTT--GTGTCCTGTGTAGCATAT--GCTAC-T-GAAAATAAATAATGCGGCT-GA-TTCATTTTTTATTATGTTTTA-AAGGAAT-AT-CTA---ACTTTGAAATGAACTGTCATATGTTTGACT-TGCTAGGTGTTCGTTTC--------------TAAC-TTGA-CTAACACATACT-TTGTTTA--CGTA-CA-TAGAC-GCA------------ACGTCACCG-CGT-GCTC-AGGTTTATAGATTT-ATTGATAT-ATCTAGGGTTAAC--TTAAGAT
gi|8 : TA-AT--GACAA---GTTTGCTTATAATA-AAACTGTAAATTGTTGATAAAAAGTTGGCTTAAATTG-AATGT-TTCTTTACAT-AT-GACATTC--AGCTTATTCGGTG
gi|9 : AA-TTGA-TACAGAACTT-GTTAAAAA--AA---TA-TTCTTGAA-ATTTA-TATGTT--GCATA-TTT-GATTACATCGGTTATT-AA--GTTTTTGTATT-TAT
blockSeqs : T A A T G T AT ATT TT T T GG T TAA C C T ATTTGTGC C A T CG CC G A C TGAT G C . AT GGG CA C A G A A T A T A . G GTT AC AAG T C T A GG T T C A G T T ATTATACTT C CGA A G T CGTG A CA C A TA C CG AGT . T TTAAA . C T G CA TA AA C G G G AAATAAAAAAA C T . A A T G CAAGA C T T A . T T A A T T C A . T A A G . . TA G T . C TGC G G A T . A T T . GTTA . G . G CT A G G A AAC C T A C T . C A . CC GA AT A AT . T C
blockSeqs : A A A . . . A ATT T T . . . . C . . TTTTCGC . . . A C . . C GAA . . . C . TA . A G A A . A T . . G TG . . . . . . AG . . A A G . A ATATATT G AA . A . . . . . . . . . T . T C . . . . . T T . . A G AA . . . . . . . . . . A . . T T . A . . . . . . . A A . . TA G A . . CTG . . T . . A . . . GTC . . . . . . . . . AAA A C . A . . . G . . G T . AT . T C
blockSeqs : T A A . . . A ATT T G . . . . C . . TTTCG . . . G C . . . TGT . . . C . A . . . . A . . T . . G TG . . . . . . . . . . A G . T TACTA G A . T . . . . . . . . . . . T . . . . . . T A . . A T AA . . . . . . . . . . . . . T T . A . . . . . . . A A . . T . C . . AG . . A . . A . . . TTT . . . . . . . . . AC A T . A . . . A . . G T . T . C .
blockSeqs : T A . . . . A . . . . . . . . . . . . . . T . . . . AC . . . . . C . . A G . . . . . . . . . . A T . . A . A . T . . . . . . . . . . . . . . . . . . . A . . A . AA . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . T . . TG . . . . . A . . . . . . . . . . . . . A A C . . . . . . . . G . . A . T .
blockSeqs : . G . . . . A G . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . A . . . . .
blockSeqs : . . . G . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : A* ATT TTTCG***** C* GAN*** C** CA ATAT******* A** A** AA********* T* A* T** ** TT** ***** A** G***
originalCons : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATA-T--TTGCGCTTAAC-TTGA-C-ACCATATGGC-GTGTTTACCCGTACCA-AAGATGGCA-GCCTCTTTG--ANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTTTGTATA-TATA-T-T-GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAAATAA-----CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT-AAATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT-ACCCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT--GAAAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
finalCons : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATATTTCG-----TTAAC-TTGA-C-ACCATATGGC-GTGTTTACC-GTACCA-AAGATGGCA-GCCTCTTGAN---GTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGACC--ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTTTGTATATAT-------GATACAGTGGGCATTAAGTGA--AAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTCA--CATTTTGGAT-ATATGC-ATACAGAACCAACACATAAAAA---------CAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGCT-TTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT--AATTGGGGAAATCTGATCTAAA-A-TGTN-G-ATAACAG-T-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACTT--TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGTA--CCTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTTG---AAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
Alignments
lowQualScore : 11 111 33333333333333 2222 111 111 1 1 1111 111 11 1 33333333333 11 1 1111 11 11 111 22222 111 444444444 22222 1 1 222 1111 3333 11111 2222222 11 11111 1
lowQualScore : 3 1 7 6 0 8 8 88 666 88 5 8 11 0 8 444 3 8 8 0 66666666666666 8 8 8 99 8 8 0 8 5 5555 1 8 8 0 8 0 999 444 44 0 0 0 3 2 3 3 0 3 3 0 5 5 4 2222 77 000 5 5 5 5 88 6 6 3 7 2 6 3 6 6 6 44444444444 5 99 0 8 1 8 7777 8 11 8 8 11 0 0 6 99 888 6 7 33333 6 6 6 6 99 88 0 777 0 8 8 3 5 000000000 8 8 8 8 8 8 8 00000 8 0 8 6 8 8 0 0 88 0 3 8 0 0 8 8 0 0 8 8 8 8 8 88 3 8 0 8 777 3 1 8 8 2222 8 8 6 8 77 5 5 5 5 2222 66666 6 5 5 77 5 5 5 6 1111111 3 3 6 8 8 8 8 3 8 0 11 55555 88 0 8 11 8 1 3
lowQualScore : . . . . . . . .. ... .. . . .. . . ... . . . . .............. . . . .. . . . . . .... . . . . . . ... ... .. . . . . . . . . . . . . . . .... .. ... . . . . .. . . . . . . . . . . ........... . .. . . . . .... . .. . . .. . . . .. ... . . ..... . . . . .. .. . ... . . . . . ......... . . . . . . . ..... . . . . . . . . .. . . . . . . . . . . . . . . .. . . . . ... . . . . .... . . . . .. . . . . .... ..... . . . .. . . . . ....... . . . . . . . . . . .. ..... .. . . .. . . .
lowQualScore : 5 7 3 7 8 0 0 88 888 88 6 0 00 8 0 000 2 0 0 8 88888888888888 0 0 0 44 0 0 8 0 0 2222 0 0 0 8 0 8 222 000 00 8 2 0 2 5 2 2 0 2 2 8 7 7 0 9999 99 000 7 7 7 7 33 7 7 3 3 5 7 5 7 7 7 33333333333 0 00 6 0 0 0 0000 0 00 0 0 00 8 8 7 22 333 7 3 33333 7 7 7 7 22 88 8 000 8 0 0 8 0 000000000 0 0 0 0 0 0 0 00000 0 8 0 0 0 0 8 8 88 8 8 0 6 8 0 0 8 8 0 0 0 0 0 88 8 0 8 0 888 2 4 0 0 0000 0 0 0 0 99 0 7 7 0 5555 77777 7 7 7 99 7 7 7 7 0000000 2 7 7 8 0 0 0 8 0 8 00 22222 88 8 0 66 0 7 3
consensus : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATAT-TT-CGC--T---TAAC-TTGA-C-ACCATATGGC-GTGTTTACC-GTACCA-AAGATGGCA-GCCTCTTT--GANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTT-TG-TA-T--ATA--T---GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACAT---------AAAAACAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATATA-AATTGGGGAAATCTGATCTAAA-A-TGT-TG-ATAACA-GT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT--A--C-CTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT---G-AAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
Reference ( family-191 ) : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-GA-GTCATTTTT-ATCATTTTTTA-AA--AATTAT-CTA---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATAT-TT-CG---T---TAAC-TTGA-C-ACCATATGGC-GTGTTTACC-GTACCA-AAGATGGCA-GCCTCTT---GANGTCACCG-CATCGCTC-AGACTTATAGATTT-CTTGAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTATGATAATAAG-TTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGGGTATT-AATTTTTTT-TG-TA-T--ATA--T---GATACAGTGGGCATTAAGTG--AAAAACGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AAACATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACAGAACCAACACAT---------AAAAACAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGAGA-ATTAAATAGA-TTTTAAAAGTTTG-GATAATGAATAT--AATTGGGGAAATCTGATCTAAA-A-TGT-NG-ATAACA-GT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCAC-TT-TTTTTTTT-----CC-AAAAGGGCT-ACAT-TA--TTGC-A-GCT-GT-TGT--A--C-CTTATCAACGT-ATATCAAACACANCAAA-TCA-TG-ATAAA-AATAA--TTTT---G-AAGCTCCTC-TCGGAGAATGGATCCACAC-AGCATATTCG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAAT
gi|1 : ACCCTCTAGTGCCCC-TGTAGCATATATGCTACAT-GAAAATAAATGAT-CGGCT-G----------T-ATCATTTTTTA-GA--AATTAT-TTA---ATTTTGAAATTAACTCTAATATGTTTAATT-TGCTAGA-GTTCATTTCATATATT-TGCACT---TAAC-TTGA-C-ACCATATGGC-AAGTTTACC-TTACCA-AAGATGGCA-GCCTCTTTGCAAAGTCACAG-CATCGCTC-AGACTTATAGATTTTCTTGAC-CCATCTA---TTAGCATTTAAAATAAGTTTAAT-GTATAAAATCTATGATAATA-G-TTTAAGAAAGGGTTAAATTT-GACATGTAACATACAAGATACGTAAA-TTAAATACAGACTTT-T--GACAA--AA---TG-TTCTTGAA-ATT-A-TATGTT--GCATA-CTT-G-CCTC-TCGGGTATT-AATTTTTTTGTA-TA-TTTATA--T---GATACAGTGGGCATTAAGTG--AAAA-CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTTAAAACT--GAGAATAAG-TTTATCT-A--AAACATTTGGA-AT--GACAA---GTTTGCTTATAATCAAAACTGTTAA-TTTTGATAAAAAGTTGGC-----TTGAAATGT-TTATTTACAT-AT-GACATTC--AGCTTTATCGATGTATCATATATGGT-ACATTGGGAATTAATTAATGGTCTC-CATTTTGGAT-ATATGC-AT-CAGAACCAA-ACATG--------AAAAATAGT-AAT-ATATTT-T-CATTTT-AT-GTGC-----GT-A-TTTGC-A-TAGAAC-ACTCCCGTTAATTTCTGC-TAAATGCTTTTCCTC-TTTTAATATCAGG-ATCAAACTGG-AAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-ATAC-AG-GGAGATATTAATTTGATTTTTAAAAGTTTGCAATAATGAATATAAAATTGGGGAAATCTGATCTAAAGA-TTT-AT-ATAACA--T-GATTCTAAAACTGAGAATGTTCCT-TTGTCCTGC-ATA-A-TGTAGCCCCTCTCCACGTT-TTTTTTTTTTTCCCC-AAAAGGGCTAACAT-TA--TTGC-A-GCT-GT-TGC--A--CTCTTATCAACGT-ATATCAAACACATTAAA-TTATTG-ATAAACAATAA--TTTTTGAA-AAGCTCCTC-TCGG-GAATGGATCCACAC-AGTATATTCGAAGGACTCTGGCCTTCC-AG-TGTGCTAT-CCAACTTTAGAATCAGGATGAA
gi|10 : aattGTAG-CCCTCTCCCC-CT-TTTTTT-------CG-GAGAGGGTT-ACAT-TA--TTGC-A-GCT-ACATGT--A------TATACATGT-ATAT
gi|11 : aaAAACATACAAGGTATGTAAA-TTAA-TACAGGGTTT-G--GAAAAACAA---TA-TTCTTGAA-ATT-A-TAT
gi|12 : GACTCTGGCCTTCCAAG-TGTGCTATCCCATTTTTAAAATCAGGATGAATa
gi|13 : TAACCATCTAGTGCCCCATGTAGCATATATGCTACAT-gg
gi|14 : gatTA--CTGCAATA-A-TGTAG-CCCTCTCC
gi|15 : ttcG--CTGCAATA-A-TGTAG-CCCTCTCCcatgtat
gi|16 : cAAAGGGTT-ACAT-TA--TTGC-A-GCT-tactgttta
gi|2 : gTAACCCTCAAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CG-CT-GA-GTCATTTT--GTCATTTTCTA-AA--AATTAT-CTT---ACTTTGAAATTAACTCTAATATGTTTGATT-TGCTAGA-GTTCATTTCATAT-TTTCGC--T---TAAC-TTGA-C-ACCATATGGC-ATGTTTACCCGTACCA-AAAATGGCA-GC-TCTT---GAAGTCACCG-CATCGCTC-A-ACTTATAGATTT-CT-GAC-C-ATCTA---TTAGCATTTAAAATGAGTTTAAT-GTATAAAATCTAT-ATAATAAG-TTTAAGAAATGGTTAGATTTTGACATGAAACATACA-GATATGTAAAATTAA--ACAA-CTTT-G--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTT-G-CTACATCGG-TATT-AATTTTTTT-TG-TA-T--ATA--TATTGATACA-TGGGCATTGAGTG--AAAAACGCA-GCTCAGTTT-GCTCATG----GTATTTC-TGATCAGGATAAATAAGTTAAAAACT--GAGAATAAG-TTTATCT-A--AAACATTAGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTTAATTTTTGATAAAAAGTTAGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGATGTATCATATATGAT-ACATTGGGAATTAATTAATGTTC-T-CATTTTGGAT-ATATGC-ATGGAGAACCAACACATAAAAAATAAAAAAATAGT-TAT-ATA-TT-T-CATTTT-AT-ATGC-----GT-ATTTTGC-A-TAGAAC-ACT-CCGTTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGG-ATCAAACTGGAAAGGAAGCAAAGGTCGGC-TTC-TCAAAATGTT-CGCGATCTT-AT-C-AG-GGATA-ATTGAATAGA-TTTTAAAAGTTTG-GATAATGAATATA-AATTGGGGAAATTTGATCTAAA-A-TGT-AG-ATAACA-GT-GATTCTAAAACTGGGAATGCTCCC-TTG--CTGCAATA-A-TGTAG-CCCTCTCCACGTTATTTTTTTT-----CA-AAAAGGGCT-ACAT-TA--CTAC-A-GCT-GT-TGT--AC-C-CTTATCAACGT-ATATCAAACACA-CAAA-TCA-AG-ATAAA-AA-AACCTTTT---G-AAGCCCCTC-TCGGAGAATGGATCCACAC-AGCATATTTG-AGGACTCTGGCCTTCCAAG-TGTGCTATCCCAACTTTAGAATCAGGATGAATacatgt
gi|3 : AACCCTCTAGTGCCCCATGTTACATAT-CGCTACATTGAAAA--AATGAT-CGGCTTGATGTC---TTT-ATCATTTTTTCTAA--AATTATTCTA---A-TTTGAAATTAACTCTAATATGTTTGATTCTGCATGA-GTTCATTTCATAT-TT-CG---T---TAACCTTGAAC-ACCATATGGCCGT-TTTAC--GTACCAGAAGATGGCAAGCCTCTT---TGTGTCAACG-CATCGCTC-AGAACTAC-GATTT-CTTGAC-C-ATCTA---TTAG-ATTTCAAATGAGCTTAATCGTAT-AAATCTATGATAATAAGTTTTAAGAAAGGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTAA-TACAGGCTTT-G--AAC-A--AA---TATTTCTTG-A-ATT-A-T-TGTTGGGCATATTTT-GCCTACATC-GGTATT-AATTTTTTT-GGATATT--ATACTT---GATACACTGGGCATTAAGTGA-AAAAACGCA-GCTCAATTT-GCTCATG----GTATATC-TGATCTTGAAAAATAAGTTAAAAATG--AAGAATAAG-TTTATTTAA--AAACA-TTGTA-AT--GGCAAT--GTTTGCTAATAATC--AACTGTTAATTTT--ATAAAAAGTTGGC-----TTG-AATGT-TTATTTA-AT-ATGGACATTC--AGCTTATTCGA-GTATCCTATATGATAACATTGGGAATTAATTAATGGTC-A-CATTTTGG---ATATGC-ATACAGAACCAACACAT---------AAAAACATTCTAT-ATA-TTAT-CATTTT-GTGGTGC-----GTCATTTTGCTA-TAGAACAACT-CCATTAATTTCTGCGTAAATGC-TTTCCTCTTTTTAATATCAGGAATCAAACTGGAAAGGAAGC-AAGGTCGGC-TTC-T-AAAA-GTT-CGCAATCTT-AT-CTAG-GGAGA-ATT-AATAGA-TTTTACCCG-TTG-GATAATGAATAT--AATTGGG--AATATGATCTAAA-ACTGT-TGCATAA-A-GTGGATTCTAAA----------------TTG--CTTCAATA-ATTGTAG-CCTCCTCCATGTC-TTTTTTTT-----CC-AAAAAGGCT-ACAT-TACTCTGC-A-GCT-GT-TGT--AACC-CTTATC-ATATAATATCAAACACACCAAA-TCA-TG-AT-AA-AATAA--TTTT---GAAAGCTCCTCATCGGAGTATGGATCCACAC-AGCATATTCA-GGGAC-CTGGCCCTCCAAGCTGTGCTATCC--ACTTTAGA--TAGAATGAa
gi|4 : TAACCCTCTAGTGCCCCATGTAGCATATATGCTACAT-GAAAATAAATGAT-CAGCT-GA-GTCATTTTT-ATCAT-----A-AG--AATTAT-CTATAAACTTTGAAATTAACTCTAATATGTTTGATT-TTCTAGA-GTTCATTTCATAA-TT-TG---TGCTTAAC-TTGA-C-ATGATATGGC-GTGTTTACC-GTACCA-A-GATGGCA-GCCTCTTT--GATGTCACCGGCATCGCTCCAGACTTATAGATTT-CTTGAC---ATCTA---TTAGTATT-AAAATTAGTTTAAT-GTATAAAATCTATGATA-TAAG-TTTAAGAA-GGGTTAGATTTTGACATGAAACATACAAGATATGTAAA-TTA--TACAGGCTTTTG--AACAA--AA---TA-TTCTTGAA-ATT-A-TATGTT--GCATA-TTTTG-CTACATCGGGTATT-TAATTTTTT-TG-TA-T--A---------ATACAGTGGGCATTAAGTG--AAAA-CGCA-GCTCATTTT-GCTCATG----GTATTTC-TGATCTTGAAAAATAAGTTAAAAACT--GAGAATAAG-TTTATTT-A--AA-CATTTGTA-AT--GACAA---GTTTGCTTATAATC-AAACTGTAAATTGTTGATAAAAAGTTGGC-----TTG-AATGT-TTATTTACAT-AT-GACATTC--AGCTTATTCGGTGTATCATATATGAT-ACATTGGGAATTAATTAATGGTC-A-CATTTTGGAT-ATATGC-ATACA-AACCAACACAT---------AAAAACAGT-TAT-ATA-TT-T-CATTTT-GT-GTGC-----GT-ATTTT-C-ATTAGTAC-ACT-CCATTAATTTCTGCGTAAATGC--TTCCTCTTTTTAATATCAGG-ATCAAACTGG---------AAAGGTCGGCTTTC-TC--AATGTTCCGCGATCTT-AT-C-AG-GGAG--ATTAAATAAA-TTTTAAAAGTTTG-GATAATGAATATA-AATTGGGGATATCTGATCTAAA-A-TGT-TG-ATAACA-GT-GATTCTGAATCTGAGAATGTTCCCTTTG--CTGC-ATATA-TGTAG-TCCTCTCCAC-----CTTTTTT-----CCGAAAAAGGCT-ACAT-TA--TTGC-AGGCT-GT-AGT--A--C-CTTATCAA-GT-ATATCAAACA-AACAAA-TCA-TG-ATGAA-AATAA--TTTT---G-AAGCTCCTC-TCGGAGAATGGATTCA-ACAAGCAT-TTCG-AGGACTCTGGCCTTCCAAG-TGTGCGATCCCAACTTTAGAATCAGGATGAAT
gi|5 : tctTATGTAAA-T-AA-TACAGACTTTTG--AACAA--AAAAGTA-TCTTCGAACATT-AATATGTTAGGCATA-TTT-G-CTAC-TCGGGTATTTAATTTTTGT-TA-TA-T---TA--CTA-GATACTGTGGGCATTAAGTGCGAAAAACGCAAGCTCATTTTTGCTCATGCGTGGTATTTCATGATCTTAAAAAATTAGTTAAAAACTCAAAGAATAAGCTTTACTT-ATAAAACATTTGTACATCGAACAAAGTGTCTG--TATAATC-AA-TTTTTAATTTT-GATAAAA-GTGGGCC----TTG-AATGTCTTATTTACATTAT-GAAATTCCAAGCTTAT-CGATGTATCATATATGA--ACATTGG-AATTA-TTAATGGTC-AACATTTTGGATCATATGCGATACATAACTAACACAT---------AAAAACAGT-TATTATA-TT-TACATTTTTGT-GTGTCAAGAGT-ATTCTGC-AATA-AAC-ACT-CCAT-AATTTCTGCGTAAA-GC-TT-CCTCCTTTTAATATCAGA-CTCAAATGGAAAAGGAAGCAAAG--CGGC-TTCTTCAAAATGTT-CGCGATCGTAAT-C-AGAGGAGA-ATTAAAgg
gi|6 : gatGA-TTTTAAAAGTTTG-GACAGTGAGTA---AATT-GGAAAACTTGATCTAAA-A-TGTCTG-ATAACAGGT-GATTCTAAAACTGAGAATGTTCCC-TTG--CTGCAATA-A-TGTAT-GCCTCTCTACTTT-TTTTTTTT-----CC-AAAAGGGCC-ACATGTA--TTGCAA-GCTGGT-TGTAAA--C-CTTATCAACGT-ATATCAAACACCACAAATTCA-TGCATAAA-AATAA--TTTT---G-AAGCTCCTC--CGGAGAATGGATCCACAT-AGCATA-TCG-AAGACTCTGGCC-TCAAAGCTGTGCTATCCCAACTTTAG-ATCAGGATGAA
gi|7 : ACCCTT--GTGTCCTGTGTAGCATAT--GCTAC-T-GAAAATAAATAATGCGGCT-GA-TTCATTTTTTATTATGTTTTA-AAGGAAT-AT-CTA---ACTTTGAAATGAACTGTCATATGTTTGACT-TGCTAGGTGTTCGTTTC-----------------TAAC-TTGA-CTAACACATACT-TTGTTTA-C-GTA-CA-TAGAC-GCA------------ACGTCACCG-CGT-GCTC-AGGTTTATAGATTT-ATTGATAT-ATCTAGGGTTAAC--TTAAGAT
gi|8 : TA-AT--GACAA---GTTTGCTTATAATA-AAACTGTAAATTGTTGATAAAAAGTTGGCTTAAATTG-AATGT-TTCTTTACAT-AT-GACATTC--AGCTTATTCGGTG
gi|9 : AA-TTGA-TACAGAACTT-GTTAAAAA--AA---TA-TTCTTGAA-ATTTA-TATGTT--GCATA-TTT-GATTACATCGGTTATT-AA--GTTTT-TG-TA-T--TTA--T---