lowQualScore : 4 1 444 444444444 33 1 11111 222 22222222222 2222 11 5555555555555555555555555555555555555555555555555555555 222 1111111 5555555555555555555555 1 555555555 222 333333333 333333333 11 111
lowQualScore : 0 0 6 6 6 111 6 000000000 6 6 6 6 00 3 44444 777 66666666666 8 1 4 8888 9999 4 55 4 1111111111111111111111111111111111111111111111111111111 5 111 3 55 1111111 0 55 5555555555555555555555 55 3 3 6 222222222 666 3 99 777777777 3 3 7777 222222222 22 4 4 4 4 8 333
lowQualScore : . . . . . ... . ......... . . . . .. . ..... ... ........... . . . .... .... . .. . ....................................................... . ... . .. ....... . .. ...................... .. . . . ......... ... . .. ......... . . .... ......... .. . . . . . ...
lowQualScore : 0 0 7 7 7 888 7 333333333 7 7 7 0 77 3 33333 999 88888888888 0 6 0 5555 2222 0 00 0 3333333333333333333333333333333333333333333333333333333 8 000 6 00 7777777 7 55 2222222222222222222222 00 5 5 7 000000000 999 3 66 000000000 6 6 7777 555555555 11 0 0 7 0 0 444
consensus : TTG-ATTAAT-GTA-TA-CA-TTTT--TGTTTT-CCTTTTTC-T-TT----C-CATA-T-TATC-TA-TTTT-----GTTTTAT-T-AAGAG-----ACTN--AT-ATCA-TTGA----ACAT--TG-CAGCAC-NTA-TA-ATAC-CA--TTA-------CT---------TATAT--GAT--C-AC--A----ACCTTGTTGAC-TTATTGACCAT-GC--ATAATT---AGATTT--T---AT----GTTA---C-AC--AAACC--TGT-TATTCGGGA-GAG-AGCAAT--CTTAAGTTTT-CAGAACTTG-TGCT-CAAT-TC------CATTG-T-AAATA----TA--TTTACA-ATA-AAA-A-TAT-G-TTCAAACCAAACCAAT
Reference ( gi|2 ) : TTGCATTAAT-GTA-TA-CA-TTTTCTTGTTTT-CCTTTTTC---TT----C-CATA-T-TGTCATA-TTTT-----GTTTTATCT-AAGAG-----ACTC--AT-ATCA-TTGA----ACAT--TG-CAGCAC-ATA-TAAATAC-CA--TTA-------CT---------TATAT--GAT--TTAC--A----ACCTTGTTGACTTTATTGACCAT-GC--ATAATT---AGATTT--TG-AAT----TTTA---C-A---AAACC--TGTCTATTCGGGA-GAGCAGCAATTGCTTAAGTTTTGCAGAACTTG-TGCC-CAATACC------CATTG-T-AAATA----TAT-TTTACA-ATA-AAA-A-TAT-G-TCAAGACCAAACCAAT
gi|6 : TTG-ATTAAT-GTA-TA-CA-TTT--TTGTTTT-CCTTTTTCTT-TT----C-CATA-T-TAT-ATATTTTT-----GTTTTAT-T-AAGAG-----AC-C--AT-ATCA-TTGA----ACA---TG-CAGCAC-ATA-T--ATAC-CA--TTA-------CT---------TATAT--GAT-----C--A----ACCTTGTTGAC-TTATTGACCAT-GC--AT-ATT---AGATTT--T---AT----GTTA---CAA---AAACC--TG
gi|1 : ttattcacagcagtacaagcatacataaagcaagatggccgatTTG-ATTAATTGTAATA-CA-TTTT--TGTTTT-TCTTTTTCGTTTT----C-CATA-T-TATC-TA-GTTT-----GGTTTAT-T-AAGAG-----AG----AT-AT-A-TTGA----ACAT---G--AGCAC--TACTACATACTCA--TTAGATAATCCT---------TATGTT-GAC--TTATTGA----TCCCAGATAGCATTATTAAT--T-GC--ATA--T---AGATT------AAT----GTT----C-A---CAACC--T-TGTATTCGGGAAGAGCA-----T-CTTAAGTTTTCCAGAAATTGGTGCTTCAAT--C------CATTG-T-AAATT----TCT-TTAGCA-ATA-AAATATTGT-A-TCAA-ACCAAACC
gi|8 : tttatagcaaattcctaaacaatatttattcatagcataaggatactaatagcagaaatggctgATTAAT-GTA-TA-CA-TT---TTGTTTTCCCTTTTTCTTTTT----T-CACA-TATATC-TAGTGTT-----GTTTT-------GAG------CT---ATAATCA-TTGA----ACATTCTGCCAGCAA-ATA-T--ATTC-CATCTTACT-----CT---------TATAT--GAT--T--C--A----ACCTTGTTGAC-TTATTGTCCAGAGC--ATA
gi|5 : gTTAAC-GTA-TAGCAATTTT----TTTT-TCTTTTTC---TTAGAGCACATATT-TATATTA-TTTTAGTTGGTTTTGACTAAAGAGATTAAATTA--AT-AACATTTGA----ACA----A-CAGCACTCTA-TA---AC-AA--TTA-------CT---------TATAT---ATGGCCAA--G----ATCTTG--GAACTGA--GACCAT-GT--ATAATT---A-ATTT--TA--------TGTA---C-AT--AAACC--TATtt
gi|7 : tttttcacgatcagtacaggagtatacataagcaataggccagatttgatTA-TA-CA-TTTT--TGTTTT-CCTTTTTC---TTTTT-C-CAAA-T-TATC-TA-GTTT-----GTTTTAT-T-AAGAG-----ACTG--AT-ATCA-TTGA----ACA---TG-CAACGC-ATA-T--ATAC-CA--TTA-------CT---------TCTAT--GCT-----C--A----ACCTTGTTGAC-TTATTGACCAT-GC--AT-ATT---AGATTT--T---AT----GTTA---C-AC--AAACT--TG
gi|9 : -TA-CA-TTTT---GTTTT-CCTTTTCT---TT----C-CATA-T-TAT-ATA-TTTT-----GTTTTAT-T-AGGAG-----ACTT--AT-ATCA-
gi|3 : tctatagtttcctgaaaaaaaatttattcacagcgtaacaagtacataaaaaagggcgccgattatgatgagaggtaggT-----GCTATATC--ATGAG-----AATA--ATTATTA-CTGATACAACAT---A-CAGTAC-TTA-TA--TCT-CC--TTA-------CT---------TATAT--AAA--TTAT--ACTCTACTTTGTTGACTG-ATTGACCAT-GC--ATATTTTAAAAATTT--T---ATGCTCTTTC---C-C---GAATA--CATTTTTTCGGGA-GAG-AGCAAT--CCTGAGTTTTA-AGAACTTC-TGCT-C-ATATCAATTAACGTTG-G-AAATG----TA--TCTGCA-A---------------TCAA-ACCAAACCAAT
gi|14 : attttgttttgaaaaaaTTAT-T-AAGAG-----ATTA--TT-ATCA-TTGA----ATAA--TG-CA-CAC-TTA-TA--T-------TTG-------CT------------------------C--A----ACCTT--TAA-TTGATTGACCAT-GC--ATTAT-----AATTT--TA--------TGTA---C-AT--AAACA--TGTagttactgataaattaaaattaagtttttgaaggatt
gi|13 : T-AAGAG-----ATTA--AT-AC------A----ACAT---G-CAGTAC-TTA-TATCT-C-CA--T-A-------CT---------AATATTTGCT--CTAT---------TTTGTTGACTG-ATCGGCCAT-GC--AT-ATT---ACATTT--TG---T----TATA---T-A---A
gi|4 : AGAG-----ATTTTGAT-ATCA-TTGA----AC----TG-CAGCAT--TG-TATATAC-CA--TTA-------CT---------TA------AT--CCTC--A----ACCTTG-TGAC-TTATTGACCAT-GCCAGTGGTT---AGATTT--T---AT----GTTA---C-ACCCAAACC--TG--TATTC-GGA-GAG-AGCAA--ACCTAAGTTTTAT-GAACTTG-T-CT-CAAT-CC------CATTG-TAAAATA----TA--TTTAC--ATA-AAA-A-TATCGTTCA--ACCAAAgt
gi|11 : TAA----ACAT---G-CAGCAC-ATA-TATATAC-CA--TTA-------CTTACAAAATGTATAT--GAT-----C--A----ACCTTGTTGAC-TTATTGACCAT-GC--A-AATT---AGATTT--T---AT----GTTA---CAA---AAACC--TGgtgatatgaagaacttctacatttagagtattttaaaggatt
gi|10 : T-GC--ATAA-----AGATTTGATGTAAG----TATAGACC-AT--GAATCAATATCTATTCGGGA-GAG-AGCAAT------------------CTTG-TGCT-CTAT-CC------CGTTG-T-ATATA----TA--TTTACA-AT--AAA-A-TAT-G-TTCAAACC-AACCAAT
gi|15 : AT----GTTA---C-AC--AAACC--TGT--ATTCGGGA-GAG-AGCAATCTTTCACGTTTT-CAGAACTTG-TGCT-CAAT-CC------CATTG-T-AAATA----TAT-GTT-CA-A
gi|20 : ttAT----GTTA---C-A---AATCT--TGTAT-TCCGGGA-GAG-AGCAA---CTTAAGTTTT-CAGAACTTG-Ta
gi|22 : tAGAACTTG-TGCT-CAAT-TC------CATTG-T-AAATA-----A----TACGTATA-AAA-A-T-T-G-TTCAAACCctc
gi|21 : GAACTTG-TGCT-CAAT-TC------CATTG-T-AAATA----TAC-GT-----ATA-AAA-A-T-T-G-TTCAAACCA
gi|17 : AACTTG-TGCT-CAAT-TC------CATTG-T-AAATA----TAC-GT-----ATA-AAA-A-TAT-G-TTCAAACCAtaa
gi|18 : AACTTG-TGCT-CAAT-TC------CATTG-T-AAATA----TA--CGTATA-ATATAAA-A-TAT-G-TTCAAACCAtaatatat
gi|16 : AACTTG-TGTT-CAAT-CC------CGTTG-T-AAATAGACATGTATTTACA-AT--AAA-A-TAT-GTTCAAG-CCAAta
gi|19 : tACTTG-TGCT-CAAT-TC------CATTGAT-AAATA----TA--CGTATA-AT--AAA-A-TAT-G-TTCAAACCAcaacatat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATGGAAGAAAGCCTCAGTTTAAACTTGCTAAAATAACCAACTTTATTGAGTATAAATAAACTCTAACAAGAAAATATATGTTCAGTAAACTAAATCGGTG
Unaligned ( gi|23 ): TGCATATTAGATTTTATGTTACAAAAACCTGT
Alignments
lowQualScore : 33333333333333333 11 11111111111 2222 111 2222 333333333333333333333333333 111111111111111111 111111111 111 111 11 11
lowQualScore : 8 8 8 5 5 1 77 5 44444444444444444 5 5 5 22 4 4 4 44444444444 7 0 3 7777 4444 3 111 0000 55 55 55 55 777777777777777777777777777 3 3 3 7777 6 44 222222222222222222 33 000000000 555 111 44 44 333 5 5 999 888 22 3 3 88888 3 3 3 3 999999 777 66666 66 55 3 3
lowQualScore : . . . . . . .. . ................. . . . .. . . . ........... . . . .... .... . ... .... .. .. .. .. ........................... . . . .... . .. .................. .. ......... ... ... .. .. ... . . ... ... .. . . ..... . . . . ...... ... ..... .. .. . .
lowQualScore : 0 0 0 7 7 7 99 7 33333333333333333 7 7 7 77 4 0 0 44444444444 3 5 6 7777 9999 6 888 5555 22 00 00 00 888888888888888888888888888 6 6 6 7777 2 22 999999999999999999 99 111111111 000 000 22 22 888 7 7 666 000 11 1 1 33333 3 3 3 3 666666 777 44444 99 77 6 6
consensus : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------T--CCATAT-TA-TC-TA-TTTTGTTTT-AT-T-AAGAG-----ACTN--AT-ATCA-TTGA----ACAT--TG-CAGCAC-N-TAT-A-ATACCA--TTA--CT--TA---------T---ATGA-TC-CA----ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATA------TA-CGTA-CA-ATA-AAAATA-T-GT-TCAAACCAAACCAAT
Reference ( family-1875 ) : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------T--CCATAT-TA-TC-TA-TTTTGTTTT-AT-T-AAGAG-----ACTN--AT-ATCA-TTGA----ACAT--TG-CAGCAC-N-TAT-A-ATACCA--TTA--CT--TA---------T---ATGA-TCACA----ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATA------TA-TTTA-CA-ATA-AAAATA-T-GT-TCAAACCAAACCAAT
gi|1 : TTG-ATT-AATTGTAATA-CATTTT--TGTTTT-TCTTTTTCGTTT----------T--CCATAT-TA-TC-TA-GTTTGGTTT-AT-T-AAGAG-----A--G--AT-AT-A-TTGA----ACA---TG--AGCAC-----T-A-CTA-CA---TA--CT--CA---------TTAGATAA-TC--------CTTATGTTG-AC-TTATTGATCCCAGATAGC--ATTATTAATTGCATAT---AGA-TTA--ATG---T-----T----CA--CAAC--CT--TG--TATTC-GGGA-AG-AGC-AT--CTT--AAGTTTTCCAGAAATTGGTGCTTCA-----A--TC-CATTG-T-AAATT------TC-TTTAGCA-AT--AAAATATT-GTATCAAACCAAACC
gi|10 : tttatagcaaattcctaaacaatatttattcatagcataaggatactaatagcagaaatggctgT-GC--A----TAA-----------AGATTTG--ATG---TAAGTATAGACCA--TGAA--TCAATATCTATTC-GGGAGAG-AGCAAT--CTT-------------------GTGC-TCT-----AT-CC-CGTTG-T-ATATA------TA-TTTA-CA-AT--AAAATA-T-GT-TCAAACC-AACCAAT
gi|11 : TAA----ACAT---G-CAGCAC-A-TAT-ATATACCA--TTA--CT--TACAAAATGTAT---ATGA-TCA------ACCT-TGTTG-AC-TTATTGACC----AT-GC--A-----AAT------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|13 : -T-AAGAG-----ATTA--AT-AC------A----ACAT---G-CAGTAC-T-TAT-A-TCTCCA--T-A--CT--AA---------T---ATTT-GCTCT----ATTT-TGTTG-AC-TGATCGGCC----AT-GC--A----T-AT------T---ACATTT----TG---T-----TA---TA--TAA
gi|14 : TT-AT-T-AAGAG-----ATTA--TT-ATCA-TTGA----ATAA--TG-CA-CAC-T-TAT-A--T------TTG--CT-------------------------CA----ACCT-T--TA-AT-TGATTGACC----AT-GC--A----TTAT-----------AATTTT--ATG---------TA---CA--TAAA--CA--TGT-gt
gi|15 : TT--ATG---T-----TA---CA--CAAA--CC--TGT--ATTC-GGGAGAG-AGCAAT--CTTTCACGTTTT-CAGAACTT-GTGC-TCA-----AT-CC-CATTG-T-AAATA------TA-TGTT-CA-A
gi|16 : AACTT-GTGT-TCA-----AT-CC-CGTTG-T-AAATAGACATGTA-TTTA-CA-AT--AAAATA-T-GT-TCAAGCCAAa
gi|17 : tAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATA------TA-CGT-----ATA-AAAATA-T-GT-TCAAACCAcaacatat
gi|18 : AACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATA------TA-CGTA-TA-ATATAAAATA-T-GT-TCAAACCAtaatatat
gi|19 : ACTT-GTGC-TCA-----AT-TC-CATTGAT-AAATA------TA-CGTA-TA-AT--AAAATA-T-GT-TCAAACCAta
gi|2 : TTGCATT-AAT-GTA-TA-CATTTTCTTGTTTT-CCTTTTTC--TT-------------CCATAT-TG-TCATA-TTTTGTTTT-ATCT-AAGAG-----ACTC--AT-ATCA-TTGA----ACAT--TG-CAGCAC-A-TATAA-ATACCA--TTA--CT--TA---------T---ATGATTTACA----ACCT-TGTTG-ACTTTATTGACC----AT-GC--A----TAAT------T---AGATTTTGAATT---T-----TA---CA---AAA--CC--TGTCTATTC-GGGAGAGCAGCAATTGCTT--AAGTTTTGCAGAACTT-GTGC-CCA-----ATACC-CATTG-T-AAATA------TATTTTA-CA-ATA-AAAATA-T-GT-CAAGACCAAACCAATtaa
gi|20 : T--ATG---T-----TA---CA---AAT--CT--TGT--ATTCCGGGAGAG-AGCAA---CTT--AAGTTTT-CAGAACTT-GT-C-TC
gi|21 : GAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATA------TA-CGT-----ATA-AAAAT--T-GT-TCAAACCA
gi|22 : AGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATA-------A---TA-CGTATA-AAAAT--T-GT-TCAAACCtaa
gi|23 : T-GC--A----TA-T------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TGT-
gi|3 : TGCTAT-AT-C-ATGAG-----AATA--ATTATTA-CTGATACAACAT---A-CAGTAC-T-TAT-A--TCTCC--TTA--CT--TA---------T---ATAAATTATACTCTACTT-TGTTG-AC-TGATTGACC----AT-GC--A----TATT------TTAAAAATTTT--ATGCTCT-----TT---CC--CGAATACA--TTT-T-TTC-GGGAGAG-AGCAAT--CCT--GAGTTTT-AAGAACTT-CTGC-TCATATCAAT-TAACGTTG-G-AAATG------TA-TCTG-CA-AT---------------CAAACCAAACCAAT
gi|4 : attttgttttgaaaaaaAGAG-----ATTTTGAT-ATCA-TTGA----AC----TG-CAGCAT-TGTAT-A--TACCA--TTA--CT--TA-------------AT---CCTCA----ACCT-TGT-G-AC-TTATTGACC----AT-GCCAG----TGGT------T---AGATTTT--ATG---T-----TA---CACCCAAA--CC--TG--TATTC--GGAGAG-AGCAAA--CCT--AAGTTTT-ATGAACTT-GT-C-TCA-----AT-CC-CATTG-TAAAATA------TA-TTTA-C--ATA-AAAATA-TCGT-TC-AACCAAAagttactgataaattaaaattaagtttttgaaggatt
gi|5 : TTG-ATTTAAC-GTA-TAGCAATTT--T-TTTT-TCTTTTTC--TTAGAGCACATAT--TTATAT-TATTT-TA-GTTGGTTTTGAC-TAAAGAGATTAAATTA--AT-AACATTTGA----ACA----A-CAGCACTC-TAT-A-ACA--A--TTA--CTTATA---------T---ATGG-CCAAG----ATCT-TG--GAAC-TGA--GACC----AT-GT--A----TAAT------T---A-ATTTT--ATG---------TA---CA--TAAA--CC--TAT-gtgatatgaagaacttctacatttagagtattttaaaggatt
gi|6 : tttttcacgatcagtacaggagtatacataagcaataggccagatTTG-ATT-AAT-GTA-TA-CATTTT--TGTTTT-CCTTTTTCT-TT----------T--CCATAT-TA-TA-TATTTTTGTTTT-AT-T-AAGAG-----AC-C--AT-ATCA-TTGA----ACA---TG-CAGCAC-A-TAT---ATACCA--TTA--CT--TA---------T---ATGA-T--CA----ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----T-AT------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|7 : ttattcacagcagtacaagcatacataaagcaagatggccgatTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------TTTCCAAAT-TA-TC-TA-GTTTGTTTT-AT-T-AAGAG-----ACTG--AT-ATCA-TTGA----ACA---TG-CAACGC-A-TAT---ATACCA--TTA--CT--TC---------T---ATGC-T--CA----ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----T-AT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CT--TG
gi|8 : G-ATT-AAT-GTA-TA-CA-TTT--TGTTTTCCCTTTTTCTTTT----------T--TCACATATA-TC-TAGTGTTGTTTT--------GAG------CT---ATAATCA-TTGA----ACATTCTGCCAGCAA-A-TAT---ATTCCATCTTACTCT--TA---------T---ATGA-TT-CA----ACCT-TGTTG-AC-TTATTGTCC----AGAGC--A----TA
gi|9 : -TA-CATTTT---GTTTT-CCTTTT-C--TT----------T--CCATAT-TA-TA-TA-TTTTGTTTT-AT-T-AGGAG-----ACTT--AT-ATCA-tt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATGGAAGAAAGCCTCAGTTTAAACTTGCTAAAATAACCAACTTTATTGAGTATAAATAAACTCTAACAAGAAAATATATGTTCAGTAAACTAAATCGGTG
Alignments
lowQualScore : 111 11 3333333333333333 11 11111111111 2222 111 1111111 444444444444444444444444444444444444444 111111111111111111 111111111 111 111 11 111111111111 11
lowQualScore : 8 8 8 5 5 222 5 33 3333333333333333 5 5 5 00 5 4 4 4 44444444444 3 3 0 3 7777 4444 3 111 9999999 55 55 000000000000000000000000000000000000000 3 3 3 7777 6 44 222222222222222222 33 000000000 555 111 44 44 333 5 5 999 888 22 3 3 88888 3 3 3 3 3 333333333333 1 66 55 3 3
lowQualScore : . . . . . ... . .. ................ . . . .. . . . . ........... . . . . .... .... . ... ....... .. .. ....................................... . . . .... . .. .................. .. ......... ... ... .. .. ... . . ... ... .. . . ..... . . . . . ............ . .. .. . .
lowQualScore : 0 0 0 7 7 999 7 66 3333333333333333 7 7 7 44 7 4 0 0 44444444444 6 6 5 6 7777 9999 6 888 5555555 00 00 444444444444444444444444444444444444444 6 6 6 7777 2 22 999999999999999999 99 111111111 000 000 22 22 888 7 7 666 000 11 1 1 33333 3 3 3 3 3 777777777777 1 99 77 6 6
consensus : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------T--C--CATAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAG-----ACTN--AT-A-TCA-TTGA----ACATT--GC-AGCAC-N-TAT-A-ATACCAT--TACT--TA---------T---AT--GA-------T--C--C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
Reference ( family-1875 ) : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------T--C--CATAT-TA-TC-TA-TT-TTGTTTT-AT-T-AAGAG-----ACTN--AT-A-TCA-TTGA----ACATT--GC-AGCAC-N-TAT-A-ATACCAT--TACT--TA---------T---AT--GA-------T--C--C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
gi|1 : TTG-ATT-AATTGTAATA-CATTTT--TGTTTTTC-TTTTTCGTTT----------T--C--CATAT-TA-TC-TA-GT-TTGGTTT-AT-T-AAGAG-----A--G--AT-A-T-A-TTGA----ACA-T--G--AGCAC-----T-A-CTA-CA---TACT--CA---------TTAGAT--AA-------T--C---------CTTATGTTG-AC-TTATTGATCCCAGATAGC--ATTATTAATTGCATAT---AGA-TTA--ATG---T-----T----CA--CAAC--CT--TG--TATTC-GGGA-AG-AGC-AT--CTT--AAGTTTTCCAGAAATTGGTGCTTCA-----A--TC-CATTG-T-AAAT-TTC-TT------TAGCAAT--AAAATATT-GTATCAAACCAAACC
gi|10 : tttatagcaaattcctaaacaatatttattcatagcataaggatactaatagcagaaatggctgT-GC--A----TAA-----------AGATTTG--ATG---TAAGTATAGACCA--TGAA--TCAATATCTATTC-GGGAGAG-AGCAAT--CTT-------------------GTGC-TCT-----AT-CC-CGTTG-T-ATAT-ATA-TT------TA-CAAT--AAAATA-T-GT-TCAAACC-AACCAAT
gi|11 : TAA----ACAT---GC-AGCAC-A-TAT-ATATACCAT--TACT--TACAAAATGTAT---AT--GA-------T--C-----A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A-----AAT------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|13 : -T-AAGAG-----ATTA--AT-A-C------A----ACAT---GC-AGTAC-T-TAT-A-TCTCCAT---ACT--AA---------T---ATTTGC-------T--C--T--A---TTT-TGTTG-AC-TGATCGGCC----AT-GC--A----T-AT------T---ACATTT----TG---T-----TA---TA--TAA
gi|14 : TT-AT-T-AAGAG-----ATTA--TT-A-TCA-TTGA----ATAAT--GC-A-CAC-T-TAT-A--T----T--TGCT------------------------------------C--A--ACCT-T--TA-AT-TGATTGACC----AT-GC--A----TTAT-----------AATTTT--ATG---------TA---CA--TAAA--CA--TGT-gt
gi|15 : TT--ATG---T-----TA---CA--CAAA--CC--TGT--ATTC-GGGAGAG-AGCAAT--CTTTCACGTTTT-CAGAACTT-GTGC-TCA-----AT-CC-CATTG-T-AAAT-ATA-TG------TT-CAA
gi|16 : AACTT-GTGT-TCA-----AT-CC-CGTTG-T-AAAT-AGA-CATGTATTTA-CAAT--AAAATA-T-GT-TCAAGCCAAa
gi|17 : tAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------T----ATA-AAAATA-T-GT-TCAAACCAcaacatat
gi|18 : AACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-TAATATAAAATA-T-GT-TCAAACCAtaatatat
gi|19 : ACTT-GTGC-TCA-----AT-TC-CATTGAT-AAAT-ATA-CG------TA-TAAT--AAAATA-T-GT-TCAAACCAta
gi|2 : TTGCATT-AAT-GTA-TA-CATTTTCTTGTTTTCC-TTTTTC--TT-------------C--CATAT-TG-TCATA-TT-TTGTTTT-ATCT-AAGAG-----ACTC--AT-A-TCA-TTGA----ACATT--GC-AGCAC-A-TATAA-ATACCAT--TACT--TA---------T---AT--GA-------T--TTAC--A--ACCT-TGTTG-ACTTTATTGACC----AT-GC--A----TAAT------T---AGATTTTGAATT---T-----TA---CA---AAA--CC--TGTCTATTC-GGGAGAGCAGCAATTGCTT--AAGTTTTGCAGAACTT-GTGC-CCA-----ATACC-CATTG-T-AAAT-ATATTT------TA-CAATA-AAAATA-T-GT-CAAGACCAAACCAATtaa
gi|20 : T--ATG---T-----TA---CA---AAT--CT--TGT--ATTCCGGGAGAG-AGCAA---CTT--AAGTTTT-CAGAACTT-GT-C-TC
gi|21 : GAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------T----ATA-AAAAT--T-GT-TCAAACCA
gi|22 : AGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATAATA-CG------T----ATA-AAAAT--T-GT-TCAAACCtaa
gi|23 : T-GC--A----TA-T------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TGT-
gi|3 : TGCTAT-AT-C-ATGAG-----AATA--ATTA-TTA-CTGATACAACAT---AC-AGTAC-T-TAT-A--TCTCCT--TACT--TA---------T---AT--AAATTATACT--C--T--A---CTT-TGTTG-AC-TGATTGACC----AT-GC--A----TATT------TTAAAAATTTT--ATGCTCT-----TT---CC--CGAATACA--TTT-T-TTC-GGGAGAG-AGCAAT--CCT--GAGTTTT-AAGAACTT-CTGC-TCATATCAAT-TAACGTTG-G-AAAT-GTA-TC------TG-CAAT---------------CAAACCAAACCAAT
gi|4 : attttgttttgaaaaaaAGAG-----ATTTTGAT-A-TCA-TTGA----AC--T--GC-AGCAT-TGTAT-A--TACCAT--TACT--TA------------------A-------T--C--CTCA--ACCT-TGT-G-AC-TTATTGACC----AT-GCCAG----TGGT------T---AGATTTT--ATG---T-----TA---CACCCAAA--CC--TG--TATTC--GGAGAG-AGCAAA--CCT--AAGTTTT-ATGAACTT-GT-C-TCA-----AT-CC-CATTG-TAAAAT-ATA-TT------TA-C-ATA-AAAATA-TCGT-TC-AACCAAAagttactgataaattaaaattaagtttttgaaggatt
gi|5 : TTG-ATTTAAC-GTA-TAGCAATTT--T-TTTTTC-TTTTTC--TTAGAGCACATAT--T--TATAT-TATTT-TA-GT-TGGTTTTGAC-TAAAGAGATTAAATTA--AT-A-ACATTTGA----ACA----AC-AGCACTC-TAT-A-ACA--AT--TACT--TA---------T---AT---A-------TGGC--C--AAGATCT-TG--GAAC-TGA--GACC----AT-GT--A----TAAT------T---A-ATTTT--ATG---------TA---CA--TAAA--CC--TAT-gtgatatgaagaacttctacatttagagtattttaaaggatt
gi|6 : tttttcacgatcagtacaggagtatacataagcaataggccagatTTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTCT-TT----------T--C--CATAT-TA-TA-TATTT-TTGTTTT-AT-T-AAGAG-----AC-C--AT-A-TCA-TTGA----ACA-T--GC-AGCAC-A-TAT---ATACCAT--TACT--TA---------T---AT--GA-------T-----C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----T-AT------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|7 : ttattcacagcagtacaagcatacataaagcaagatggccgatTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------TTTC--CAAAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAG-----ACTG--AT-A-TCA-TTGA----ACA-T--GC-AACGC-A-TAT---ATACCAT--TACT--TC---------T---AT--GC-------T-----C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----T-AT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CT--TG
gi|8 : G-ATT-AAT-GTA-TA-CATTTT---GTTTTCCCTTTTTC--TT----------T--TTTCACATATA-TC-TA-GTGTTGTTTT--------GAG------CT---AT-AATCA-TTGA----ACATTCTGCCAGCAA-A-TAT-A-TT-CCATCTTACTCTTA---------T---AT--GA-------T--T--C--A--ACCT-TGTTG-AC-TTATTGTCC----AGAGC--A----TA
gi|9 : -TA-CATTTT---GTTTTCC-TTTT-C--TT----------T--C--CATAT-TA-TA-TA-TT-TTGTTTT-AT-T-AGGAG-----ACTT--AT-A-TCA-tt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATGGAAGAAAGCCTCAGTTTAAACTTGCTAAAATAACCAACTTTATTGAGTATAAATAAACTCTAACAAGAAAATATATGTTCAGTAAACTAAATCGGTG
Alignments
lowQualScore : 111 11 3333333333333333 11111111111 2222 111 1111111 444444444444444444444444444444444444444 111111111111111111 111111111 111 111 11 111111111111 11
lowQualScore : 8 8 8 5 5 222 5 33 3333333333333333 5 5 5 66 5 4 4 4 44444444444 3 3 0 3 7777 4444 3 111 9999999 55 55 000000000000000000000000000000000000000 3 3 3 7777 6 44 222222222222222222 33 000000000 555 111 44 44 333 5 5 999 888 22 3 3 88888 3 3 3 3 3 333333333333 1 66 55 3 3
lowQualScore : . . . . . ... . .. ................ . . . .. . . . . ........... . . . . .... .... . ... ....... .. .. ....................................... . . . .... . .. .................. .. ......... ... ... .. .. ... . . ... ... .. . . ..... . . . . . ............ . .. .. . .
lowQualScore : 0 0 0 7 7 999 7 66 3333333333333333 7 7 7 44 7 4 0 0 44444444444 6 6 5 6 7777 9999 6 888 5555555 00 00 444444444444444444444444444444444444444 6 6 6 7777 2 22 999999999999999999 99 111111111 000 000 22 22 888 7 7 666 000 11 1 1 33333 3 3 3 3 3 777777777777 1 99 77 6 6
consensus : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------T--C--CATAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAG-----ACTN--AT-A-TCA-TTGA----ACATT--GC-AGCAC-N-TAT-A-ATACCAT--TACT--TA---------T---AT--GA-------T--C--C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
Reference ( family-1875 ) : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------T--C--CATAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAG-----ACTN--AT-A-TCA-TTGA----ACATT--GC-AGCAC-N-TAT-A-ATACCAT--TACT--TA---------T---AT--GA-------T--C--C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
gi|1 : TTG-ATT-AATTGTAATA-CATTTT--TGTTTTTC-TTTTTCGTTT----------T--C--CATAT-TA-TC-TA-GT-TTGGTTT-AT-T-AAGAG-----A--G--AT-A-T-A-TTGA----ACA-T--G--AGCAC-----T-A-CTA-CA---TACT--CA---------TTAGAT--AA-------T--C---------CTTATGTTG-AC-TTATTGATCCCAGATAGC--ATTATTAATTGCATAT---AGA-TTA--ATG---T-----T----CA--CAAC--CT--TG--TATTC-GGGA-AG-AGC-AT--CTT--AAGTTTTCCAGAAATTGGTGCTTCA-----A--TC-CATTG-T-AAAT-TTC-TT------TAGCAAT--AAAATATT-GTATCAAACCAAACC
gi|10 : tttatagcaaattcctaaacaatatttattcatagcataaggatactaatagcagaaatggctgT-GC--A----TAA-----------AGATTTG--ATG---TAAGTATAGACCA--TGAA--TCAATATCTATTC-GGGAGAG-AGCAAT--CTT-------------------GTGC-TCT-----AT-CC-CGTTG-T-ATAT-ATA-TT------TA-CAAT--AAAATA-T-GT-TCAAACC-AACCAAT
gi|11 : TAA----ACAT---GC-AGCAC-A-TAT-ATATACCAT--TACT--TACAAAATGTAT---AT--GA-------T--C-----A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A-----AAT------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|13 : -T-AAGAG-----ATTA--AT-A-C------A----ACAT---GC-AGTAC-T-TAT-A-TCTCCAT---ACT--AA---------T---ATTTGC-------T--C--T--A---TTT-TGTTG-AC-TGATCGGCC----AT-GC--A----T-AT------T---ACATTT----TG---T-----TA---TA--TAA
gi|14 : TT-AT-T-AAGAG-----ATTA--TT-A-TCA-TTGA----ATAAT--GC-A-CAC-T-TAT-A--T----T--TGCT------------------------------------C--A--ACCT-T--TA-AT-TGATTGACC----AT-GC--A----TTAT-----------AATTTT--ATG---------TA---CA--TAAA--CA--TGT-gt
gi|15 : TT--ATG---T-----TA---CA--CAAA--CC--TGT--ATTC-GGGAGAG-AGCAAT--CTTTCACGTTTT-CAGAACTT-GTGC-TCA-----AT-CC-CATTG-T-AAAT-ATA-TG------TT-CAA
gi|16 : AACTT-GTGT-TCA-----AT-CC-CGTTG-T-AAAT-AGA-CATGTATTTA-CAAT--AAAATA-T-GT-TCAAGCCAAa
gi|17 : tAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------T----ATA-AAAATA-T-GT-TCAAACCAcaacatat
gi|18 : AACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-TAATATAAAATA-T-GT-TCAAACCAtaatatat
gi|19 : ACTT-GTGC-TCA-----AT-TC-CATTGAT-AAAT-ATA-CG------TA-TAAT--AAAATA-T-GT-TCAAACCAta
gi|2 : TTGCATT-AAT-GTA-TA-CATTTTCTTGTTTTCC-TTTTTC--TT-------------C--CATAT-TG-TCATA-TT-TTGTTTT-ATCT-AAGAG-----ACTC--AT-A-TCA-TTGA----ACATT--GC-AGCAC-A-TATAA-ATACCAT--TACT--TA---------T---AT--GA-------T--TTAC--A--ACCT-TGTTG-ACTTTATTGACC----AT-GC--A----TAAT------T---AGATTTTGAATT---T-----TA---CA---AAA--CC--TGTCTATTC-GGGAGAGCAGCAATTGCTT--AAGTTTTGCAGAACTT-GTGC-CCA-----ATACC-CATTG-T-AAAT-ATATTT------TA-CAATA-AAAATA-T-GT-CAAGACCAAACCAATtaa
gi|20 : T--ATG---T-----TA---CA---AAT--CT--TGT--ATTCCGGGAGAG-AGCAA---CTT--AAGTTTT-CAGAACTT-GT-C-TC
gi|21 : GAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------T----ATA-AAAAT--T-GT-TCAAACCA
gi|22 : AGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATAATA-CG------T----ATA-AAAAT--T-GT-TCAAACCtaa
gi|23 : T-GC--A----TA-T------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TGT-
gi|3 : TGCTAT-AT-C-ATGAG-----AATA--ATTA-TTA-CTGATACAACAT---AC-AGTAC-T-TAT-A--TCTCCT--TACT--TA---------T---AT--AAATTATACT--C--T--A---CTT-TGTTG-AC-TGATTGACC----AT-GC--A----TATT------TTAAAAATTTT--ATGCTCT-----TT---CC--CGAATACA--TTT-T-TTC-GGGAGAG-AGCAAT--CCT--GAGTTTT-AAGAACTT-CTGC-TCATATCAAT-TAACGTTG-G-AAAT-GTA-TC------TG-CAAT---------------CAAACCAAACCAAT
gi|4 : attttgttttgaaaaaaAGAG-----ATTTTGAT-A-TCA-TTGA----AC--T--GC-AGCAT-TGTAT-A--TACCAT--TACT--TA------------------A-------T--C--CTCA--ACCT-TGT-G-AC-TTATTGACC----AT-GCCAG----TGGT------T---AGATTTT--ATG---T-----TA---CACCCAAA--CC--TG--TATTC--GGAGAG-AGCAAA--CCT--AAGTTTT-ATGAACTT-GT-C-TCA-----AT-CC-CATTG-TAAAAT-ATA-TT------TA-C-ATA-AAAATA-TCGT-TC-AACCAAAagttactgataaattaaaattaagtttttgaaggatt
gi|5 : TTG-ATTTAAC-GTA-TAGCAATTT--T-TTTTTC-TTTTTC--TTAGAGCACATAT--T--TATAT-TATTT-TA-GT-TGGTTTTGAC-TAAAGAGATTAAATTA--AT-A-ACATTTGA----ACA----AC-AGCACTC-TAT-A-ACA--AT--TACT--TA---------T---AT---A-------TGGC--C--AAGATCT-TG--GAAC-TGA--GACC----AT-GT--A----TAAT------T---A-ATTTT--ATG---------TA---CA--TAAA--CC--TAT-gtgatatgaagaacttctacatttagagtattttaaaggatt
gi|6 : tttttcacgatcagtacaggagtatacataagcaataggccagatTTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTCT-TT----------T--C--CATAT-TA-TA-TATTT-TTGTTTT-AT-T-AAGAG-----AC-C--AT-A-TCA-TTGA----ACA-T--GC-AGCAC-A-TAT---ATACCAT--TACT--TA---------T---AT--GA-------T-----C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----T-AT------T---AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|7 : ttattcacagcagtacaagcatacataaagcaagatggccgatTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------TTTC--CAAAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAG-----ACTG--AT-A-TCA-TTGA----ACA-T--GC-AACGC-A-TAT---ATACCAT--TACT--TC---------T---AT--GC-------T-----C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----T-AT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CT--TG
gi|8 : G-ATT-AAT-GTA-TA-CATTTT---GTTTTCCCTTTTTC--TT----------T--TTTCACATATA-TC-TA-GTGTTGTTTT--------GAG------CT---AT-AATCA-TTGA----ACATTCTGCCAGCAA-A-TAT-A-TT-CCATCTTACTCTTA---------T---AT--GA-------T--T--C--A--ACCT-TGTTG-AC-TTATTGTCC----AGAGC--A----TA
gi|9 : -TA-CATTTT---GTTTTCC-TTTT-C--TT----------T--C--CATAT-TA-TA-TA-TT-TTGTTTT-AT-T-AGGAG-----ACTT--AT-A-TCA-tt
blockSeqs : C T . . G CTT C T AGAGCACATATT A T A TT G G C A ATTAAATTA T A T TACA TTCT C TG ATATAC CT CT CAAAATGTATATGATCAA . A T . A CA TATTTTAA GA TAAGTA GAC CCC TA AA TCT C C TTG TCA GC . . TATCA A A A A A CATGTATTTA A AT A C .
blockSeqs : . . . . . T . . TTTC . . . T . . . . ATTTTG . . . . AT . TC AAATAC . . TATAAATTATACTCTA . . . . . . TAATT . CTCT . T . . TCT . . T A C . . . . . . . . TTTTA A A A . .
blockSeqs : . . . . . T . . TTTT . . . G . . . . ATTA . . . . TT . A ATCTC . . TATATGGCCAAGA . . . . . . TGGTT . T . A . . TT . . T A C . . . . . . . . TTTA A A A . .
blockSeqs : . . . . . T . . TC . . . G . . . . ATTA . . . . T . T ATCT . . TATGATTTACAA . . . . . . TAATT . T . T . . T . . T G A . . . . . . . . TGTT A A A . .
blockSeqs : . . . . . TC . . . G . . . . ACTC . . . . T . T ATAC . . TATTTGCTCTA . . . . . . AATT . T . T . . T . . A A A . . . . . . . . CGTA A A A . .
blockSeqs : . . . . . C . . . T . . . . AATA . . . . T . A AACA . . TATGATTCAA . . . . . . TATT . T . C . . T . . . . . . . . . . . . . CGTA A A A . .
blockSeqs : . . . ACTG . . . . T . T ATAC . . TATGATCAA . . . . . . TTAT . T . A . . . . . . . . . . TCTG A . A . .
blockSeqs : . . . ACTT . . . . T . A ATAC . . TATGCTCAA . . . . . . TATT . T . C . . . . . . . . . . TTTA . . . . .
blockSeqs : . . ACC . . . . T . A ATTC . . ATCCTCAA . . . . . . TATT . T . T . . . . . . . . . . CGT . . . . .
blockSeqs : CT . . . . . . A AT . . CAA . . . . . . TATT . T . A . . . . . . . . . . CGT . . . . .
blockSeqs : . . TAA . T . C . . . . . . . . . . CGT .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** ACTN******* A** TATGNTCAA****************************** **** TATT************** N* CGTA******** A* A*
originalCons : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------T--C--CATAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAG-----ACTN--AT-A-TCA-TTGA----ACATT--GC-AGCAC-N-TAT-A-ATACCAT--TACT--TA---------T---AT--GA-------T--C--C--A--ACCT-TGTTG-AC-TTATTGACC----AT-GC--A----TAAT------T---AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
finalCons : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTTCC-TTTTTC--TT----------T--C--CATAT-TA-TC-TA-GT-TTGTTTT-AT-T-AAGAGACTN-------AT-A-TCA-TTGA----ACATT--GC-AGCACA--TAT-A-ATACCAT--TACT--TATATGNTCAA------------------------------CCT-TGTTG-AC-TTATTGACC----AT-GC--ATATT--------------AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTTN-AGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATACGTA--------CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATGGAAGAAAGCCTCAGTTTAAACTTGCTAAAATAACCAACTTTATTGAGTATAAATAAACTCTAACAAGAAAATATATGTTCAGTAAACTAAATCGGTG
Alignments
lowQualScore : 11 3333333333333 11111111111 2222 11 22 222222222222222222222222 111111111111111 111111111 111 111 11 111111111111 11
lowQualScore : 8 8 8 5 5 1 77 5 55 6666666666666 5 5 5 0 5 5 4 4 3 22222222222 7 0 3 7777 4444 3 33 3 11 22 55 55 111111111111111111111111 666 55 55 3 3 55 999999999999999 3 44 3 6 6666 1 33 000000000 555 111 44 44 333 5 5 999 888 44 3 3 88888 3 3 3 3 3 333333333333 1 66 55 3 3
lowQualScore : . . . . . . .. . .. ............. . . . . . . . . . ........... . . . .... .... . .. . .. .. .. .. ........................ ... .. .. . . .. ............... . .. . . .... . .. ......... ... ... .. .. ... . . ... ... .. . . ..... . . . . . ............ . .. .. . .
lowQualScore : 0 0 0 7 7 7 99 7 77 6666666666666 7 7 7 7 7 0 4 0 6 33333333333 3 5 6 7777 9999 6 44 6 55 99 00 00 333333333333333333333333 444 00 00 6 6 00 222222222222222 1 22 1 2 5555 8 99 111111111 000 000 22 22 888 7 7 666 000 44 1 1 33333 3 3 3 3 3 777777777777 1 99 77 6 6
consensus : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------T--CCATAT-TATC-T-AGT-TT-GTTTT-AT-TAA-GAGACTN--A-----T-ATCATT-GA----ACAT--TG-CAGCAC-NTAT-A--TACCA--TTA--CTTA---------TAT--G-N-------T---CAA--CCT--TGTTGA-C-TTATTGA--CCA---------------T-GC--AT-A-TT----AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-CAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
Reference ( family-1875 ) : TTG-ATT-AAT-GTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------T--CCATAT-TATC-T-AGT-TT-GTTTT-AT-TAA-GAGACTN--A-----T-ATCATT-GA----ACAT--TG-CAGCAC-ATAT-A-ATACCA--TTA--CTTA---------TAT--G-N-------T---CAA--CCT--TGTTGA-C-TTATTGA--CCA---------------T-GC--AT-A-TT----AGATTTT--ATG---T-----TA---CA--CAAA--CC--TGT-TATTC-GGGAGAG-AGCAAT--CTT--AAGTTTT-NAGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-CAATA-AAAATA-T-GT-TCAAACCAAACCAAT
gi|1 : TTG-ATT-AATTGTAATA-CATTTT--TGTTTT-TCTTTTTCGTTT----------T--CCATAT-TATC-T-AGT-TT-GGTTT-AT-TAA-GAGA--G--A-----T-AT-ATT-GA----ACA---TG--AGCAC----T-A-CTA-CA---TA--CTCA---------TTA--G-A-------T---AAT--CCTTATGTTGA-C-TTATTGATCCCAGATAGCATTATTAATT-GC--AT-A--T----AGA-TTA--ATG---T-----T----CA--CAAC--CT--TG--TATTC-GGGA-AG-AGC-AT--CTT--AAGTTTTCCAGAAATTGGTGCTTCA-----A--TC-CATTG-T-AAAT-TTC-TT------TAGCAAT--AAAATATT-GTATCAAACCAAACC
gi|10 : tttatagcaaattcctaaacaatatttattcatagcataaggatactaatagcagaaatggctg---------------T-GC--AT-A-A-----AGATTTG--ATG---TAAGTATAGACCA--TGAA--TCAATATCTATTC-GGGAGAG-AGCAAT--CTT-------------------GTGC-TCT-----AT-CC-CGTTG-T-ATAT-ATA-TT------TA-CAAT--AAAATA-T-GT-TCAAACC-AACCAAT
gi|11 : T-AA----ACAT---G-CAGCAC-ATAT-ATATACCA--TTA--CTTACAAAATGTATAT--G-A-------T---CAA--CCT--TGTTGA-C-TTATTGA--CCA---------------T-GC--AA-A-TT----AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|13 : -TAA-GAGATTA--A-----T-AC------A----ACAT---G-CAGTAC-TTAT-A-TCTCCA--T-A--CTAA---------TATTTG-C-------T---CTA--TTT--TGTTGA-C-TGATCGG--CCA---------------T-GC--AT-A-TT----ACATTT----TG---T-----TA---TA--TAA
gi|14 : TT-AT-TAA-GAGATTA--T-----T-ATCATT-GA----ATAA--TG-CA-CAC-TTAT-A---------------TT------------T--G-C-------T---CAA--CCT----TTAA-T-TGATTGA--CCA---------------T-GC--AT-T-AT----A-ATTTT--ATG---------TA---CA--TAAA--CA--TGT-gt
gi|15 : TT--ATG---T-----TA---CA--CAAA--CC--TGT--ATTC-GGGAGAG-AGCAAT--CTTTCACGTTTT-CAGAACTT-GTGC-TCA-----AT-CC-CATTG-T-AAAT-ATA-TG------TT-CAA
gi|16 : AACTT-GTGT-TCA-----AT-CC-CGTTG-T-AAAT-AGA-CATGTATTTA-CAAT--AAAATA-T-GT-TCAAGCCAAa
gi|17 : tAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------T----ATA-AAAATA-T-GT-TCAAACCAcaacatat
gi|18 : AACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------TA-TAATATAAAATA-T-GT-TCAAACCAtaatatat
gi|19 : ACTT-GTGC-TCA-----AT-TC-CATTGAT-AAAT-ATA-CG------TA-TAAT--AAAATA-T-GT-TCAAACCAta
gi|2 : TTGCATT-AAT-GTA-TA-CATTTTCTTGTTTT-CCTTTTTC--TT-------------CCATAT-TGTCAT-ATT-TT-GTTTT-ATCTAA-GAGACTC--A-----T-ATCATT-GA----ACAT--TG-CAGCAC-ATATAA-ATACCA--TTA--CTTA---------TAT--G-A-------TTTACAA--CCT--TGTTGA-CTTTATTGA--CCA---------------T-GC--ATAA-TT----AGATTTTGAATT---T-----TA---CA---AAA--CC--TGTCTATTC-GGGAGAGCAGCAATTGCTT--AAGTTTTGCAGAACTT-GTGC-CCA-----ATACC-CATTG-T-AAAT-ATATTT------TA-CAATA-AAAATA-T-GT-CAAGACCAAACCAATtaa
gi|20 : T--ATG---T-----TA---CA---AAT--CT--TGT--ATTCCGGGAGAG-AGCAA---CTT--AAGTTTT-CAGAACTT-GT-C-TC
gi|21 : GAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAAT-ATA-CG------T----ATA-AAAAT--T-GT-TCAAACCA
gi|22 : AGAACTT-GTGC-TCA-----AT-TC-CATTG-T-AAATAATA-CG------T----ATA-AAAAT--T-GT-TCAAACCtaa
gi|23 : ---------------T-GC--AT-A-TT----AGATTTT--ATG---T-----TA---CA--AAAA--CC--TGT-
gi|3 : T-GCTAT-AT-CAT-GAGAATA--A-----TTATTACT-GATACAACAT---A-CAGTAC-TTAT-A--TCTCC--TTA--CTTA---------TAT--A-AATTATACT---CTA--CTT--TGTTGA-C-TGATTGA--CCA---------------T-GC--AT-A-TTTTAAAAATTTT--ATGCTCT-----TT---CC--CGAATACA--TTT-T-TTC-GGGAGAG-AGCAAT--CCT--GAGTTTT-AAGAACTT-CTGC-TCATATCAAT-TAACGTTG-G-AAAT-GTA-TC------TG-CAAT---------------CAAACCAAACCAAT
gi|4 : attttgttttgaaaaaaA-GAGATTTTGA-----T-ATCATT-GA----AC----TG-CAGCATTGTAT-A--TACCA--TTA--CTTA----------AT--C-C-------T---CAA--CCT--TGT-GA-C-TTATTGA--CCA---------------T-GCCAGT-GGTT----AGATTTT--ATG---T-----TA---CACCCAAA--CC--TG--TATTC--GGAGAG-AGCAAA--CCT--AAGTTTT-ATGAACTT-GT-C-TCA-----AT-CC-CATTG-TAAAAT-ATA-TT------TA-C-ATA-AAAATA-TCGT-TC-AACCAAAagttactgataaattaaaattaagtttttgaaggatt
gi|5 : TTG-ATTTAAC-GTA-TAGCAATTT--T-TTTT-TCTTTTTC--TTAGAGCACATAT--TTATAT-TATT-TTAGT-TG-GTTTTGAC-TAAAGAGATTA--AATTAAT-AACATTTGA----ACA----A-CAGCACTCTAT-A-ACA--A--TTA--CTTA---------TATATG-G-------C---CAAGATCT--TG--GAAC-TGA--GA--CCA---------------T-GT--AT-AATT----A-ATTTT--ATG---------TA---CA--TAAA--CC--TAT-gtgatatgaagaacttctacatttagagtattttaaaggatt
gi|6 : tttttcacgatcagtacaggagtatacataagcaataggccagatTTG-ATT-AAT-GTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------TT-CCATAT-TATA-T-ATT-TTTGTTTT-AT-TAA-GAGAC-C--A-----T-ATCATT-GA----ACAT---G-CAGCAC-ATAT-A--TACCA--TTA--CTTA---------TAT--G-A-------T---CAA--CCT--TGTTGA-C-TTATTGA--CCA---------------T-GC--AT-A-TT----AGATTTT--ATG---T-----TA---CA--AAAA--CC--TG
gi|7 : ttattcacagcagtacaagcatacataaagcaagatggccgatTA-TA-CATTTT--TGTTTT-CCTTTTTC--TT----------TTTCCAAAT-TATC-T-AGT-TT-GTTTT-AT-TAA-GAGACTG--A-----T-ATCATT-GA----ACAT---G-CAACGC-ATAT-A--TACCA--TTA--CTTC---------TAT--G-C-------T---CAA--CCT--TGTTGA-C-TTATTGA--CCA---------------T-GC--AT-A-TT----AGATTTT--ATG---T-----TA---CA--CAAA--CT--TG
gi|8 : G-ATT-AAT-GTA-TA-CA-TTT--TGTTTTCCCTTTTTCTTTT----------T--TCACATATATC-T-AGTGTT-GTTTT--------GAG-CT---A-----TAATCATT-GA----ACATTCTGCCAGCAA-ATAT---ATTCCATCTTACTCTTA---------TAT--GAT-------T---CAA--CCT--TGTTGA-C-TTATTGT--CCA---------------GAGC--AT-A-TT----
gi|9 : -TA-CATTTT---GTTTT-CCTTTT-C--TT----------T--CCATAT-TATA-T-ATT-TT-GTTTT-AT-TAG-GAGACTT--A-----T-ATCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATGGAAGAAAGCCTCAGTTTAAACTTGCTAAAATAACCAACTTTATTGAGTATAAATAAACTCTAACAAGAAAATATATGTTCAGTAAACTAAATCGGTG