lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222
lowQualScore : 11111 1111 1 111111 11 222 1 11 111 11 1 1111 1 111111 111 22 222 222222 111111 6666666666666666666666666666666666666666666666666666666666666666666666666666 11 11 1 222222 1 222222222222 1 1111 1 2 222222222222 444444444444444444444444444444444444444444444 1 33333333333 33333 3 111
lowQualScore : 44444 0000 66 2 0 1 111111 4 7 66 555 1 11 4 888 000 3 1 5 0 777 99 000 00 5 000 5 1 5 5 9999 6 6 7 3 1 222222 77 000 5 11 66 77 5 666 5 4 4 3 3 444444 888888 3333333333333333333333333333333333333333333333333333333333333333333333333333 11 11 6 444444 0 666666666666 6 8 6 7777 3 0 444444444444 6 6 999999999999999999999999999999999999999999999 5 8 99999999999 0 3 77777 77 5 222 5 3
lowQualScore : ..... .... .. . . . ...... . . .. ... . .. . ... ... . . . . ... .. ... .. . ... . . . . .... . . . . . ...... .. ... . .. .. .. . ... . . . . . ...... ...... ............................................................................ .. .. . ...... . ............ . . . .... . . ............ . . ............................................. . . ........... . . ..... .. . ... . .
lowQualScore : 33333 6666 44 5 2 4 888888 4 0 11 111 1 99 4 222 666 1 9 0 2 000 44 444 11 0 999 7 0 7 7 2222 7 7 0 2 7 333333 99 555 0 88 99 99 1 999 0 3 3 0 9 333333 666666 0000000000000000000000000000000000000000000000000000000000000000000000000000 00 00 4 222222 0 333333333333 0 0 4 0000 3 0 000000000000 7 7 444444444444444444444444444444444444444444444 0 0 00000000000 8 8 44444 88 0 444 0 2
consensus : GGATTGGGAA-----GGCCAAAAT----GG-TCAATGGGACAATGGCCCCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTAA-TTT-CTGTAAATAACAA-TTANA-AC-AT---TG-T-TTCTTGGTTTTATTAAAAT----A-AGCAC--ATAATTTC--GTTTTC-CCACCTGCACTG-TCCGTTGT--CTCGTC-TACATTTGACCTTGCCCTTCCGAAGTTTCGGGTCTA-----NTTT----G-AAC-TTT----TCA----C-----------ATTTCATA-AGCAA----------AC------------AC----C----CTT--CTT--TAANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TG-TTTCAACCAATGAAATTCAGTGTATCAGAA----CAC-TT-G-AAATTAGAAACGAAAGTACAAAAAATAAAAGTA-AAAAA--TAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGACAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
Reference ( gi|3 ) : GGATTGGGAA-----GGCCAAAAT----GG-TCAATGGGACTATGGCCCCACG----ATTCAAC-TTCT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-ATAATATTTGT-GAAGGGCCA--TTATTTC-A-GTAG-TTT-CTGTAAATAACAA-TTATA-AC-AT---CG-T-TTCTAGGTTTTATTAAAAT----A-AGCAC--ATAATTTC--ATTTTC-CCACCTGCACTG-ACCATTGT--CTTGTA-AACATTTGACCTTGCCCTTCCAAAGTTTGGGGTTTA-----ATTT----G-AAC--------TCA----T-----------ATTTCATA-AGCAA----------AC------------AC---------CTT--CTT--TAACAGCACGT---TAGTATA-AGA---AG---C---ATTCCATTGGT-TATCTGTAT----TG-TTT-AACCAATGAAATTCAGTGTATCGAAA----CAC-TT-G-AAATTAGAAA---------------T---------------TAAG--TCGTTAC-CAATAGAC-TT-G-------A-GAGAAAAACGTAAGTATGTGATCGATAATGGTATGCGCC-G-TTCGGCGCATGGATTGAATGATT
gi|13 : GGATTGGGAA-----GGCCAAAATGCCAGG-TCAATGG---------CCCGCC----A-TCAA---------AAT-----ATTTT------TTTAA-GGGG--AATC-----TTTTTTT-AAA----------------A-GTAT-TTT-TTGTAAATAACAA-TTGTACAC-A
gi|5 : agGATTGGGAA-----GGCCAAAAT----GG-TCAATGGGACTATGACCCCATA----TTTCAAC-TTTT--CGATGGTCCATTTTC-A-AACTTAATGGGC--CATC-ATA---TTTGT-GAAGGGCCA--TTTTTTTTG-GTAA-TTT-CAGTAAATAACAA-TCATA-AC-AT---TG-T-CTCTTGGTTTTAATAAAAT----A-AGCCC--ATAATTTC--ATTTTC-CCACCTGCACTG-TCCAATGT--CTCGTA-AACATTTGACCTTGTCCTTCCAAAGTTTGGGGTCTA-----ATTT----G-ATC--------TCA----T-----------ATTTCATA-AGCAA----------ACATGTGCTACTTGAC---------CTT--CTT--TAATAGCACGTACGTAGTacat
gi|6 : GATTGAGAA-----GGCCAAAAT----GGGTCAATGG-ACAATG-CCCCATG----GTTCA-C-TTTT--CAATGG--CATTTTC-A-A-TTTAATGGG---CATCAAAAATATTTTT-GAAGGTTCATTTTTTTTC-GTGTAA-TTT-CT-CGAATAATAA-TTA-A-ACAAT---TG-T-GTTTTGG-TTTATT-------------------TAATTTC--GTTTTC-CCAACTGCACTG-TCCG-TGT--CTCGTC-TAC-CTTAACCTTGCGCTT-CAAATTTTGGATCCTA-----TTTT----G-AACTTTTCT--TCAGGGTC-----------ATTTCATATAGCAA----------AC------------ATTCTACTTGACTT--CTT--TAATACGATTG---TAGTATA-
gi|1 : ATTGGGAATAGAAGGCCAAAGT----GG-TCAATGGGACAATGGCCCCACG----GTTCAAC-TTTT--CTATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTAA-TTT-TTGGAAATTATAA-TTAAA-AC-AT---TG-T-TTCTTGGTTTGATTAAAATATTAA-AGAAC--AGAATTTC--GTTTTC-CCACCTGCACTG-TCTGTTG
gi|14 : aggtATTGGGAA-----GGCCAAAAT----CA-TCAATGGGACTATGGCCCCACT----GCTCAAA-TTTT--CAATGCGCCATTTTA-A-AAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatttcattgtttgtctctattgtttcaaccaatgagattccgtgtatcagtacacgctgaaattagaaacgaaagtacaaaaaattaagtcgtactcgatacacttcaggagaaaaaggtaagttgcgatcgataatggatgcgccagtttggcgcagggattgaataatttaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|7 : TGGGAA-----GGCCAAAAT----GT-TCAATGGGACAATGGCCCCATG----GTTCAAC-TTTT--CAATGCACCATTTTTTA-AATTTCATAAGC--CATT-AAAATATTTTT-GAAGGGCGA--TTTTTCC-G-GTAA-TTT-CTTGAAATAATAA-TTAAA-AC-AT---TG-T-TTCTTGGTTTTATTAAAAT----A-AGCAC--ATAATTTT--GTTTTC-CCACCTGCACTG-TCCGTTGT--CTCGTC-TGCATATAGCCTTGCCCTTCCAAAGTTTCGGGTTCA-----TTTT----G-AAC--------TTT----TTCTTCGGGGTCATTTCATA-ATCAA----------AC------------Aataataaagtataaactgttgtttg
gi|8 : GGAA-----G-CCAAAAT----G--TCAATGGGACAATGGTGCCACG----GTTCAACTTTTT--CAAT-GGCCATTTT--A-AATTTAATGGGC--CATCGAAGATATTTTT-GAAAGGCTA--TTA-TTC-G-GTAA-TTTCCTGT-AATAACCATTTACA-AC-ATATATGCT-TTCTTG--TTTA-TAAAAT----ATAGCACGTATAATTTTTGTTTTTCACCACCTGCACTA-TCCA-TGTCGCTCGAC-TACATTTGACCTTGCACTT-CGAAGTTTCGGGTCTACT---ATTT------AACTTTTT---TCAGGG-C-----------ATTTCATA-AGCAA----------tgtgctatttgacct
gi|12 : tCAAAAT----GG-TCAATGGGACAATGGCCCCATGCAGAATTCAAC-TTTT--GAATTGGCAATTTTT-A-GATTTAATAGGC--CATT-AAAATATTCTT-GAAGGGTCA--TT-TTTC-A-GTAA-TTT-CTc
gi|2 : ACT----ATTTAAC-TTTTTTCA--GGGC-ATTT-C-ATAAGCAACTGTGTTACATC-AAACTATTTTTCAAAAGGCC----T-TTTC-A-GTAGATCT-CTGTAAATAGCAA-TTAGA-AA-AT---AA-TATTTTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTC--GTTTTC-CCATCTGCACTGTTCCGTTGT--CTTGTCTAAT-TTTGACCTTGTCTCCCCGAATTTTGGG--CTA-----ATCTTCGGG-GGC------------------------------TTATA-AGCAACATGTGCT--ACTTG---------AC---------CTG--TTTAATAA-AGCACG----TAGTATATCAA---AG---CAAAAGTTCATTGATATATCT-TAT----TGCTTC-AACCAATTAAATTCAGTGTATC---A----CAA-TT-GTAAATTAGAAA---------------CGAGAGTAAAAAAA--TAAGGTTCG-TACTCAATACACTTT-G-------G-GAG-AAAACGTAAG--TGCGATTATCAATGG--GGCGCC-ATTTTGGCG-AT-GATTGAATCATT
gi|4 : tTATCAAAAT----A-AACAC--ACAATTTT--GTTTTT-CCACCTGCAGTG-TCTGTTGT--CTGGTC-TACATTTAACCTTGCTCTTCCAAAGTTTCGGGTCTACATGTATTT----TTAAC--------TTT----TTCTTCGGAACCATTTCATA-AGCAATTTAAAGCAAAT------------ATGTGCCA---CTTAACCT--TAAGAGCATGT---T-GTATA-AGA---AGAGTC---ATTTCATTGGT-TATCTATATATATTGCTTT-AACCAGTGAAATTCAGTGTATCAGAACTTTCAT-TT-G-GAATTAGAAA---------------CAAAAGTACAAAAAAGTAAG--TCA-TACTCAATATAC-AT-GTACTTCAA-GAGAAAAATGTAGGT-TACAATCGACAATGG-ATGCGCA-A-TTCGGTGCATGGATCGAATGtaatgcgccaatttcatctgaat
gi|11 : ATTTG--ACCTTC-T-ACCTGAACTG-CCTATTGT--CTCGTC-TACATATAACCTTGCCCTTCCAAAGTTTCGGATCTA-----TTTT----G-AACGTTTTTCTTCA----C-----------ATTTTAT----CAA----------Atgccaattttcatcagaatgggactatggcgca
gi|10 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgct------------AC---------CTT--CTT--TAAGAGCACGT----GGTATA-AGACGAAA---C---ATTTCAATGGT-TATCTATAT----TG-TTTCAACCAATGAAATTCGGTGTGTCAGAA----TGCATT-G-AAATTAGAAAAAAAG----------TACAAAATTAG-----TAAG--TCG-TACTCAATATAC-TTCG-------A-GAAAGAAACGTA--------ATTG--------ATGCGCA-G-TTTGATGCATCTATTGAATGATTtgggcagatttgaa
gi|9 : atgtatgtgctacacgG---C---ATTTCATTGGT-TATCTCTAT----TG-CTTCAGCCAATGAAATTCAGTGTATCAGAA----CAC-TTTG-AAATTAGAAACGAAAGTACAAAAAAT---------------TAAG--TTGT-ACTCAATACAC-TTTG-------A-GAGAAAAACGTAAGT-TGCGATCAATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATTATT
gi|1 : ---C---ATTTCATTGTT-TGTCTCTAT----TG-TTTCAACCAATGAGATTCCGTGTATCAGTA----CACGCT-G-AAATTAGAAACGAAAGTACAAAAAAT---------------TAAG--TCG-TACTCGATACAC-TT-C-------AGGAGAAAAAGGTAAGT-TGCGATCGATAATGG-ATGCGCCAG-TTTGGCGCAGGGATTGAATAATTtaatgtgccaattttcatctgaatggaactatggcgcagggcgcatggccttcccaatccctg
gi|18 : aggtattgggaatagaaggccaaagtggtcaatgggacaatggccccacggttcaacttttctatgggccattttcaaatttaatgggccatcaaaatatttttgaagggccattttttcggtaatttttggaaattataattaaaacattgtttcttggtttgattaaaatattaaagaacagaatttcgttttcccacctgcactgtctgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-TTC-ATCCAATGAAATTAAGTGTATTGGAA----CACTTT-G-GAATTtaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTTG
Unaligned ( gi|16 ): AGTTTTAATCTGAATGGGACTATGGCACAGGGCACATGGCCTTCCCAATCCGT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 111111111111
lowQualScore : 11111 11 111 1111 111 1111 1111111 7777777777777777777777 99999999999999999999999999999999999999999999 111111 111 1111111 1111 2222222 888888888888 1 22222222222
lowQualScore : 22222 00 66 2 9999 4 55 2 1 99 4 666 8 2 4 000 777 4 4 5 0000 1 555 5 1 0 0000 5 66 5 66 4 66 0 3 4 3333333 4 9999 9999999999999999999999 4 22222222222222222222222222222222222222222222 99 99 1 555555 8 777 3333333 6 7 4444 2 4444444 5 2 2 000000000000 6 3 22222222222 6 1 2 6 888 2 1
lowQualScore : ..... .. .. . .... . .. . . .. . ... . . . ... ... . . . .... . ... . . . .... . .. . .. . .. . . . ....... . .... ...................... . ............................................ .. .. . ...... . ... ....... . . .... . ....... . . . ............ . . ........... . . . . ... . .
lowQualScore : 55555 11 11 7 4444 0 55 5 6 77 0 222 9 0 4 777 000 4 4 0 6666 0 666 7 4 4 6666 0 99 0 11 4 11 4 1 4 8888888 4 4444 2222222222222222222222 4 99999999999999999999999999999999999999999999 22 22 0 777777 0 555 3333333 7 5 2222 3 0000000 7 5 5 555555555555 7 3 77777777777 7 0 2 7 777 5 0
consensus : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TT----GAAC-----TT---TT----CGGGG-CATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAAC----AC-TTG-AAATTAGAAACGAAAGTACAAAAAAT------------TAAGTCGT-ACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
Reference ( family-180 ) : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TT----GAAC-----TT---TT----CA----CATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGTTTCAACCAATGAAATTCAGTGTATCAGAAC----AC-TTG-AAATTAGAAACGAAAGTACAAAAAATAAAAGTAAAAAATAAGTCGT-ACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGACAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
gi|1 : ATTGGGAATAGAAGGCCAAAGTGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CTATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-TTGGAAATTATAA-TT----AAAACAT---TG-TTTCTTGGTTTGATTAAAATATTAA-AGAAC--AGAA-TTTCGTTTTC--CCACCTGCACTG-TCT--GTTG
gi|1 : aggt---C---ATTTCATTGTT-TGTCTCTAT----TGTTTCAACCAATGAGATTCCGTGTATCAGTAC----ACGCTG-AAATTAGAAACGAAAGTACAAAAAAT------------TAAGTCGT-ACTCGATACAC-TT-C-------AGGAGAAAAAGGTAAGT-TGCGATCGATAATGG-ATGCGCCAG-TTTGGCGCAGGGATTGAATAATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatttcattgtttgtctctattgtttcaaccaatgagattccgtgtatcagtacacgctgaaattagaaacgaaagtacaaaaaattaagtcgtactcgatacacttcaggagaaaaaggtaagttgcgatcgataatggatgcgccagtttggcgcagggattgaataatttaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|10 : aggtattgggaatagaaggccaaagtggtcaatgggacaatggccccacggttcaacttttctatgggccattttcaaatttaatgggccatcaaaatatttttgaagggccattttttcggtaatttttggaaattataattaaaacattgtttcttggtttgattaaaatattaaagaacagaatttcgttttcccacctgcactgtctgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna--------AC---A--------CGA---------C--------CTT--CTTTA--AGAGCACGT----GGTATA-AGACGAAA---C---ATTTCAATGGT-TATCTATAT----TGTTTCAACCAATGAAATTCGGTGTGTCAGAAT----GCATTG-AAATTAGAAA-AAAAGTACAAAA--T-----TAG----TAAGTCGT-ACTCAATATAC-TTCG-------A-GAAAGAAACGTAA-T-T-------------G-ATGCGCA-G-TTTGATGCATCTATTGAATGATTtaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|11 : atgtatgtgctTTCGGGT-TCAT------T-TT----GAAC-----TT---TTTCTTCGGGGTCATTTCATA-ATCAA--------AC---A--------
gi|11 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTAT------T-TT----GAACGTTTTTC---TT----CA----CATTTTAT----CAA--------Atgtgctatttgaccttctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttatcaaatgggcagatttgaa
gi|12 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgaccCAAAATGG-TCAATGGGACAATGGCC--CCATGCAGAATTCAAC-TTTT--GAATTGGCAATTTTT-A-GATTTAATAGGC--CATT-AAAATATTCTT-GAAGGGTCA---TTTTTC-A-GTA-ATTT-CTtgggcagatttgaa
gi|13 : GGATTGGGAA-----GGCCAAAATG--CCA---GGTCAATGGCCCGCCA--------TCAA---------AAT-----ATTTT------TTTAA-GGGG--AATC-----TTTTTTT-AAAAG--TA--TTTTT---------------TGTAAATAACAA-TTGTACACAACAT---
gi|14 : agATTGGGAA-----GGCCAAAATCA-TCAATGGGACTATGGCC--CCACT----GCTCAAA-TTTT--CAATGCGCCATTTTA-A-AA
gi|18 : TTCATCCAATGAAATTAAGTGTATTGGAAC----ACTTTG-GAATTataataaagtataaactgttgtttg
gi|2 : TTTAAC-TTTTTTCA--GGGC-ATTT-C-ATAAGCAACTGTGTTACATC-AAACTATTTTTCAAAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAATAGCAA-TT----AGAAAATAA-TA-TTT-TTGGTTTTATTAAAAT----A-AGCAC--ATAA--TTCGTTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTAA------T-CTTCGGGGGC-----TT---------------------ATA-AGCAACATGTGCTACTTGA--------C-----------C----------T--GTTTAATAAAGCACG----TAGTATATCAA---AG---CAAAAGTTCATTGATATATCT-TAT----TGCTTCAACCAATTAAATTCAGTGTATC---AC----AA-TTGTAAATTAGAAACGAGAGTA-AAAAAAT-AAGGT----------TCGT-ACTCAATACACTTT-G-------G-GAG-AAAACGTAAG--TGCGATTATCAATGG-G-GCGCC-ATTTTGGCG-AT-GATTGAATCATT
gi|3 : tactaGGATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGGCC--CCACG----ATTCAAC-TTCT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-ATAATATTTGT-GAAGGGCCA--TTATTTC-A-GTA-GTTT-CTGTAAATAACAA-TT----ATAACAT---CG-TTTCTAGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCATTTTC--CCACCTGCACTG-ACC--ATTGTCTTGTAAACATTTGACCTTGCCCTTCCAAAGTTTGGGGT-TTAA------T-TT----GAAC-----T----------CA----TATTTCATA-AGCAA--------AC---A--------C-----------C---------TT--CTTTA--ACAGCACGT---TAGTATA-AGA---AG---C---ATTCCATTGGT-TATCTGTAT----TGTTT-AACCAATGAAATTCAGTGTATCGAAAC----AC-TTG-AAATTAGA---------------AAT------------TAAGTCGTTAC-CAATAGAC-TT-G-------A-GAGAAAAACGTAAGTATGTGATCGATAATGGTATGCGCC-G-TTCGGCGCATGGATTGAATGATTtaatgcgccaatttcatctgaat
gi|4 : TATCAAAAT----A-AACAC--ACAA-TTTTGTTTTT--CCACCTGCAGTG-TCT--GTTGTCTGGTCTACATTTAACCTTGCTCTTCCAAAGTTTCGGGT-CTACATGTATT-TT----TAAC-----TT---TTTCTTCGGAACCATTTCATA-AGCAATTTAAA--GC---AAATATGTGC-----------CA-------CTTAACCTTA--AGAGCATGT---T-GTATA-AGA---AGAGTC---ATTTCATTGGT-TATCTATATATATTGCTTTAACCAGTGAAATTCAGTGTATCAGAACTTTCAT-TTG-GAATTAGAAACAAAAGTACAAAAAA------------GTAAGTCAT-ACTCAATATAC-AT-GTACTTCAA-GAGAAAAATGTAGGT-TACAATCGACAATGG-ATGCGCA-A-TTCGGTGCATGGATCGAAT
gi|5 : GATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGACC--CCATA----TTTCAAC-TTTT--CGATGGTCCATTTTC-A-AACTTAATGGGC--CATC-A---TATTTGT-GAAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAATAACAA-TC----ATAACAT---TG-TCTCTTGGTTTTAATAAAAT----A-AGCCC--ATAA-TTTCATTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAA------T-TT----GA--------T---CT----CA----TATTTCATA-AGCAA--------AC---A--------TGTGCTACTTGAC--------CTT--CTTTA--ATAGCACGTACGTAGTgtgccaattttcatcagaatgggactatggcgca
gi|6 : GATTGAGAA-----GGCCAAAATGGGTCAATGG-ACAATG-CC--CCATG----GTTCA-C-TTTT--CAATGG--CATTTTC-A-A-TTTAATGGG---CATCAAAAATATTTTT-GAAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAATAATAA-TT----AAACAAT---TG-TGTTTTGG-TTTATT-------------------TAA-TTTCGTTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTAT------T-TT----GAAC-----TTTTCTT----CAGGGTCATTTCATATAGCAA--------AC---A--------T-----------TCTACTTGACTT--CTTTA--ATACGATTG---TAGTATA-
gi|7 : TGGGAA-----GGCCAAAATGT-TCAATGGGACAATGGCC--CCATG----GTTCAAC-TTTT--CAATGCACCATTTTTTA-AATTTCATAAGC--CATT-AAAATATTTTT-GAAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAATAATAA-TT----AAAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTTGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCAT------T-TT----GAAC-----TT---TTTCTTCGGGGTCATTTCATA-ATCAA--------AC---A--------
gi|8 : GGAA-----G-CCAAAATG--TCAATGGGACAATGGTG--CCACG----GTTCAACTTTTT--CAAT-GGCCATTTT--A-AATTTAATGGGC--CATCGAAGATATTTTT-GAAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AATAACCATTT----ACAACATATATGCTTTCTTG--TTTA-TAAAAT----ATAGCACGTATAATTTTTGTTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTAC------TATT----TAACTT---TT---TT----CAGGG-CATTTCATA-AGCAA--------tgtgctatttgacct
gi|9 : tG---C---ATTTCATTGGT-TATCTCTAT----TGCTTCAGCCAATGAAATTCAGTGTATCAGAAC----ACTTTG-AAATTAGAAACGAAAGTACAAAAAAT------------TAAGTTGT-ACTCAATACACTTT-G-------A-GAGAAAAACGTAAGT-TGCGATCAATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATTATTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTTG
Unaligned ( gi|16 ): AGTTTTAATCTGAATGGGACTATGGCACAGGGCACATGGCCTTCCCAATCCGT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 11111 11 111 1111 111 1111 111111111 33333333333333333333333333 9999999999999999999999999999999999999999999 111111 111 1111111 1111 1111111 22222222222
lowQualScore : 22222 00 66 2 9999 4 55 2 1 99 4 666 8 2 4 000 777 4 4 5 0000 1 555 5 1 0 0000 5 66 5 66 4 66 0 3 4 444444444 33333333333333333333333333 4 4444444444444444444444444444444444444444444 99 99 1 555555 8 777 3333333 6 7 4444 3 6 8888888 5 5 2 2 6 7 99 6 6 99999999999 6 1 6 888 2 1
lowQualScore : ..... .. .. . .... . .. . . .. . ... . . . ... ... . . . .... . ... . . . .... . .. . .. . .. . . . ......... .......................... . ........................................... .. .. . ...... . ... ....... . . .... . . ....... . . . . . . .. . . ........... . . . ... . .
lowQualScore : 55555 11 11 7 4444 0 55 5 6 77 0 222 9 0 4 777 000 4 4 0 6666 0 666 7 4 4 6666 0 99 0 11 4 11 4 1 4 777777777 00000000000000000000000000 4 5555555555555555555555555555555555555555555 22 22 0 777777 0 555 3333333 7 5 2222 7 3 3333333 7 7 5 5 7 2 22 7 7 33333333333 7 0 7 777 5 0
consensus : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TTGAAC--TT----TT----C----GGGG-C-ATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAAC----AC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
Reference ( family-180 ) : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TTGAAC--TT----TT----C----GGGG-C-ATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAAC----AC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
gi|1 : ATTGGGAATAGAAGGCCAAAGTGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CTATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-TTGGAAATTATAA-TT----AAAACAT---TG-TTTCTTGGTTTGATTAAAATATTAA-AGAAC--AGAA-TTTCGTTTTC--CCACCTGCACTG-TCT--GTTG
gi|1 : aggt---C---ATTTCATTGTT-TGTCTCTAT----TGTTTCAACCAATGAGATTCCGTGTATCAGTAC----ACGCT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCGATACAC-TT-C-------AGGAGAAAAAGGTAAGT-TGCGATCGATAATGG-ATGCGCCAG-TTTGGCGCAGGGATTGAATAATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatttcattgtttgtctctattgtttcaaccaatgagattccgtgtatcagtacacgctgaaattagaaacgaaagtacaaaaaattaagtcgtactcgatacacttcaggagaaaaaggtaagttgcgatcgataatggatgcgccagtttggcgcagggattgaataatttaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|10 : aggtattgggaatagaaggccaaagtggtcaatgggacaatggccccacggttcaacttttctatgggccattttcaaatttaatgggccatcaaaatatttttgaagggccattttttcggtaatttttggaaattataattaaaacattgtttcttggtttgattaaaatattaaagaacagaatttcgttttcccacctgcactgtctgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna--------AC---A--------CGA---------C--------CTT--CTTTA--AGAGCACGT----GGTATA-AGACGAAA---C---ATTTCAATGGT-TATCTATAT----TGTTTCAACCAATGAAATTCGGTGTGTCAGAAT----GCATT-G-AAATTAGAAA-AAAAGTACAAAATTAGTAAG--TCG-TACTCAATATAC-TTCG-------A-GAAAGAAACGTAA-T-T-------------G-ATGCGCA-G-TTTGATGCATCTATTGAATGATTtaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|11 : atgtatgtgctTTCGGGT-TCAT------T-TTGAAC--TTTTTCTT----C----GGGGTC-ATTTCATA-ATCAA--------AC---A--------
gi|11 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTAT------T-TTGAACGTTT----TT----C----TTCA-C-ATTTTAT----CAA--------Atgtgctatttgaccttctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttatcaaatgggcagatttgaa
gi|12 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgaccCAAAATGG-TCAATGGGACAATGGCC--CCATGCAGAATTCAAC-TTTT--GAATTGGCAATTTTT-A-GATTTAATAGGC--CATT-AAAATATTCTT-GAAGGGTCA---TTTTTC-A-GTA-ATTT-CTtgggcagatttgaa
gi|13 : GGATTGGGAA-----GGCCAAAATG--CCA---GGTCAATGGCCCGCCA--------TCAA---------AAT-----ATTTT------TTTAA-GGGG--AATC-----TTTTTTT-AAAAG--TA--TTTTT---------------TGTAAATAACAA-TTGTACACAACAT---
gi|14 : agATTGGGAA-----GGCCAAAATCA-TCAATGGGACTATGGCC--CCACT----GCTCAAA-TTTT--CAATGCGCCATTTTA-A-AA
gi|18 : TTCATCCAATGAAATTAAGTGTATTGGAAC----ACTTT-G-GAATTataataaagtataaactgttgtttg
gi|2 : TTTAAC-TTTTTTCA--GGGC-ATTT-C-ATAAGCAACTGTGTTACATC-AAACTATTTTTCAAAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAATAGCAA-TT----AGAAAATAA-TA-TTT-TTGGTTTTATTAAAAT----A-AGCAC--ATAA--TTCGTTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTAA----------------TC----TT----C----GGGG-G-CTT--ATA-AGCAACATGTGCTACTTGA--------C-----------C----------T--GTTTAATAAAGCACG----TAGTATATCAA---AG---CAAAAGTTCATTGATATATCT-TAT----TGCTTCAACCAATTAAATTCAGTGTATC---AC----AA-TT-GTAAATTAGAAACGAGAGTA-AAAA-AA-TAAGGTTCG-TACTCAATACACTTT-G-------G-GAG-AAAACGTAAG--TGCGATTATCAATGG-G-GCGCC-ATTTTGGCG-AT-GATTGAATCATT
gi|3 : tactaGGATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGGCC--CCACG----ATTCAAC-TTCT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-ATAATATTTGT-GAAGGGCCA--TTATTTC-A-GTA-GTTT-CTGTAAATAACAA-TT----ATAACAT---CG-TTTCTAGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCATTTTC--CCACCTGCACTG-ACC--ATTGTCTTGTAAACATTTGACCTTGCCCTTCCAAAGTTTGGGGT-TTAA------T-TTGAAC--TC----AT----------------ATTTCATA-AGCAA--------AC---A--------------------C--------CTT--CTTTA--ACAGCACGT---TAGTATA-AGA---AG---C---ATTCCATTGGT-TATCTGTAT----TG-TTTAACCAATGAAATTCAGTGTATCGAAAC----AC-TT-G-AAATTAG---------------A-AATTAAG--TCGTTAC-CAATAGAC-TT-G-------A-GAGAAAAACGTAAGTATGTGATCGATAATGGTATGCGCC-G-TTCGGCGCATGGATTGAATGATTtaatgcgccaatttcatctgaat
gi|4 : TATCAAAAT----A-AACAC--ACAA-TTTTGTTTTT--CCACCTGCAGTG-TCT--GTTGTCTGGTCTACATTTAACCTTGCTCTTCCAAAGTTTCGGGT-CTACATGTATT-TTTAAC--TT----TTTCTTC----GGAA-CCATTTCATA-AGCAATTTAAA--GC---AAATATGTGC-----------CA-------CTTAACCTTA--AGAGCATGT---T-GTATA-AGA---AGAGTC---ATTTCATTGGT-TATCTATATATATTGCTTTAACCAGTGAAATTCAGTGTATCAGAACTTTCAT-TT-G-GAATTAGAAACAAAAGTACAAAA-AAGTAAG--TCA-TACTCAATATAC-AT-GTACTTCAA-GAGAAAAATGTAGGT-TACAATCGACAATGG-ATGCGCA-A-TTCGGTGCATGGATCGAAT
gi|5 : GATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGACC--CCATA----TTTCAAC-TTTT--CGATGGTCCATTTTC-A-AACTTAATGGGC--CATC-A---TATTTGT-GAAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAATAACAA-TC----ATAACAT---TG-TCTCTTGGTTTTAATAAAAT----A-AGCCC--ATAA-TTTCATTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAA------T-TTGA-----T----CT----C-------A-T-ATTTCATA-AGCAA--------AC---A--------TGTGCTACTTGAC--------CTT--CTTTA--ATAGCACGTACGTAGTgtgccaattttcatcagaatgggactatggcgca
gi|6 : GATTGAGAA-----GGCCAAAATGGGTCAATGG-ACAATG-CC--CCATG----GTTCA-C-TTTT--CAATGG--CATTTTC-A-A-TTTAATGGG---CATCAAAAATATTTTT-GAAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAATAATAA-TT----AAACAAT---TG-TGTTTTGG-TTTATT-------------------TAA-TTTCGTTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTAT------T-TTGAAC--TT----TT----CTTCAGGGT-C-ATTTCATATAGCAA--------AC---A--------T-----------TCTACTTGACTT--CTTTA--ATACGATTG---TAGTATA-
gi|7 : TGGGAA-----GGCCAAAATGT-TCAATGGGACAATGGCC--CCATG----GTTCAAC-TTTT--CAATGCACCATTTTTTA-AATTTCATAAGC--CATT-AAAATATTTTT-GAAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAATAATAA-TT----AAAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTTGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCAT------T-TTGAAC--TTTTTCTT----C----GGGGTC-ATTTCATA-ATCAA--------AC---A--------
gi|8 : GGAA-----G-CCAAAATG--TCAATGGGACAATGGTG--CCACG----GTTCAACTTTTT--CAAT-GGCCATTTT--A-AATTTAATGGGC--CATCGAAGATATTTTT-GAAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AATAACCATTT----ACAACATATATGCTTTCTTG--TTTA-TAAAAT----ATAGCACGTATAATTTTTGTTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTAC------TATTTAACTTTT----TT----C----AGGG-C-ATTTCATA-AGCAA--------tgtgctatttgacct
gi|9 : tG---C---ATTTCATTGGT-TATCTCTAT----TGCTTCAGCCAATGAAATTCAGTGTATCAGAAC----AC-TTTG-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TTG-TACTCAATACAC-TTTG-------A-GAGAAAAACGTAAGT-TGCGATCAATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATTATTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTTG
Unaligned ( gi|16 ): AGTTTTAATCTGAATGGGACTATGGCACAGGGCACATGGCCTTCCCAATCCGT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 11111 11 111 1111 111 1111 111111111 33333333333333333333333333 9999999999999999999999999999999999999999999 111111 111 1111111 1111 1111111 22222222222
lowQualScore : 22222 00 66 2 9999 4 55 2 1 99 4 666 8 2 4 000 777 4 4 5 0000 1 555 5 1 0 0000 5 66 5 66 4 66 0 3 4 444444444 33333333333333333333333333 4 4444444444444444444444444444444444444444444 99 99 1 555555 8 777 3333333 6 7 4444 3 6 8888888 5 5 2 2 6 7 99 6 6 99999999999 6 1 6 888 2 1
lowQualScore : ..... .. .. . .... . .. . . .. . ... . . . ... ... . . . .... . ... . . . .... . .. . .. . .. . . . ......... .......................... . ........................................... .. .. . ...... . ... ....... . . .... . . ....... . . . . . . .. . . ........... . . . ... . .
lowQualScore : 55555 11 11 7 4444 0 55 5 6 77 0 222 9 0 4 777 000 4 4 0 6666 0 666 7 4 4 6666 0 99 0 11 4 11 4 1 4 777777777 00000000000000000000000000 4 5555555555555555555555555555555555555555555 22 22 0 777777 0 555 3333333 7 5 2222 7 3 3333333 7 7 5 5 7 2 22 7 7 33333333333 7 0 7 777 5 0
consensus : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TTGAAC--TT----TT----C----GGGG-C-ATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAAC----AC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
Reference ( family-180 ) : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TTGAAC--TT----TT----C----GGGG-C-ATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAAC----AC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
gi|1 : ATTGGGAATAGAAGGCCAAAGTGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CTATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-TTGGAAATTATAA-TT----AAAACAT---TG-TTTCTTGGTTTGATTAAAATATTAA-AGAAC--AGAA-TTTCGTTTTC--CCACCTGCACTG-TCT--GTTG
gi|1 : aggt---C---ATTTCATTGTT-TGTCTCTAT----TGTTTCAACCAATGAGATTCCGTGTATCAGTAC----ACGCT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCGATACAC-TT-C-------AGGAGAAAAAGGTAAGT-TGCGATCGATAATGG-ATGCGCCAG-TTTGGCGCAGGGATTGAATAATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatttcattgtttgtctctattgtttcaaccaatgagattccgtgtatcagtacacgctgaaattagaaacgaaagtacaaaaaattaagtcgtactcgatacacttcaggagaaaaaggtaagttgcgatcgataatggatgcgccagtttggcgcagggattgaataatttaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|10 : aggtattgggaatagaaggccaaagtggtcaatgggacaatggccccacggttcaacttttctatgggccattttcaaatttaatgggccatcaaaatatttttgaagggccattttttcggtaatttttggaaattataattaaaacattgtttcttggtttgattaaaatattaaagaacagaatttcgttttcccacctgcactgtctgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna--------AC---A--------CGA---------C--------CTT--CTTTA--AGAGCACGT----GGTATA-AGACGAAA---C---ATTTCAATGGT-TATCTATAT----TGTTTCAACCAATGAAATTCGGTGTGTCAGAAT----GCATT-G-AAATTAGAAA-AAAAGTACAAAATTAGTAAG--TCG-TACTCAATATAC-TTCG-------A-GAAAGAAACGTAA-T-T-------------G-ATGCGCA-G-TTTGATGCATCTATTGAATGATTtaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|11 : atgtatgtgctTTCGGGT-TCAT------T-TTGAAC--TTTTTCTT----C----GGGGTC-ATTTCATA-ATCAA--------AC---A--------
gi|11 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTAT------T-TTGAACGTTT----TT----C----TTCA-C-ATTTTAT----CAA--------Atgtgctatttgaccttctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttatcaaatgggcagatttgaa
gi|12 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgaccCAAAATGG-TCAATGGGACAATGGCC--CCATGCAGAATTCAAC-TTTT--GAATTGGCAATTTTT-A-GATTTAATAGGC--CATT-AAAATATTCTT-GAAGGGTCA---TTTTTC-A-GTA-ATTT-CTtgggcagatttgaa
gi|13 : GGATTGGGAA-----GGCCAAAATG--CCA---GGTCAATGGCCCGCCA--------TCAA---------AAT-----ATTTT------TTTAA-GGGG--AATC-----TTTTTTT-AAAAG--TA--TTTTT---------------TGTAAATAACAA-TTGTACACAACAT---
gi|14 : agATTGGGAA-----GGCCAAAATCA-TCAATGGGACTATGGCC--CCACT----GCTCAAA-TTTT--CAATGCGCCATTTTA-A-AA
gi|18 : TTCATCCAATGAAATTAAGTGTATTGGAAC----ACTTT-G-GAATTataataaagtataaactgttgtttg
gi|2 : TTTAAC-TTTTTTCA--GGGC-ATTT-C-ATAAGCAACTGTGTTACATC-AAACTATTTTTCAAAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAATAGCAA-TT----AGAAAATAA-TA-TTT-TTGGTTTTATTAAAAT----A-AGCAC--ATAA--TTCGTTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTAA----------------TC----TT----C----GGGG-G-CTT--ATA-AGCAACATGTGCTACTTGA--------C-----------C----------T--GTTTAATAAAGCACG----TAGTATATCAA---AG---CAAAAGTTCATTGATATATCT-TAT----TGCTTCAACCAATTAAATTCAGTGTATC---AC----AA-TT-GTAAATTAGAAACGAGAGTA-AAAA-AA-TAAGGTTCG-TACTCAATACACTTT-G-------G-GAG-AAAACGTAAG--TGCGATTATCAATGG-G-GCGCC-ATTTTGGCG-AT-GATTGAATCATT
gi|3 : tactaGGATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGGCC--CCACG----ATTCAAC-TTCT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-ATAATATTTGT-GAAGGGCCA--TTATTTC-A-GTA-GTTT-CTGTAAATAACAA-TT----ATAACAT---CG-TTTCTAGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCATTTTC--CCACCTGCACTG-ACC--ATTGTCTTGTAAACATTTGACCTTGCCCTTCCAAAGTTTGGGGT-TTAA------T-TTGAAC--TC----AT----------------ATTTCATA-AGCAA--------AC---A--------------------C--------CTT--CTTTA--ACAGCACGT---TAGTATA-AGA---AG---C---ATTCCATTGGT-TATCTGTAT----TG-TTTAACCAATGAAATTCAGTGTATCGAAAC----AC-TT-G-AAATTAG---------------A-AATTAAG--TCGTTAC-CAATAGAC-TT-G-------A-GAGAAAAACGTAAGTATGTGATCGATAATGGTATGCGCC-G-TTCGGCGCATGGATTGAATGATTtaatgcgccaatttcatctgaat
gi|4 : TATCAAAAT----A-AACAC--ACAA-TTTTGTTTTT--CCACCTGCAGTG-TCT--GTTGTCTGGTCTACATTTAACCTTGCTCTTCCAAAGTTTCGGGT-CTACATGTATT-TTTAAC--TT----TTTCTTC----GGAA-CCATTTCATA-AGCAATTTAAA--GC---AAATATGTGC-----------CA-------CTTAACCTTA--AGAGCATGT---T-GTATA-AGA---AGAGTC---ATTTCATTGGT-TATCTATATATATTGCTTTAACCAGTGAAATTCAGTGTATCAGAACTTTCAT-TT-G-GAATTAGAAACAAAAGTACAAAA-AAGTAAG--TCA-TACTCAATATAC-AT-GTACTTCAA-GAGAAAAATGTAGGT-TACAATCGACAATGG-ATGCGCA-A-TTCGGTGCATGGATCGAAT
gi|5 : GATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGACC--CCATA----TTTCAAC-TTTT--CGATGGTCCATTTTC-A-AACTTAATGGGC--CATC-A---TATTTGT-GAAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAATAACAA-TC----ATAACAT---TG-TCTCTTGGTTTTAATAAAAT----A-AGCCC--ATAA-TTTCATTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAA------T-TTGA-----T----CT----C-------A-T-ATTTCATA-AGCAA--------AC---A--------TGTGCTACTTGAC--------CTT--CTTTA--ATAGCACGTACGTAGTgtgccaattttcatcagaatgggactatggcgca
gi|6 : GATTGAGAA-----GGCCAAAATGGGTCAATGG-ACAATG-CC--CCATG----GTTCA-C-TTTT--CAATGG--CATTTTC-A-A-TTTAATGGG---CATCAAAAATATTTTT-GAAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAATAATAA-TT----AAACAAT---TG-TGTTTTGG-TTTATT-------------------TAA-TTTCGTTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTAT------T-TTGAAC--TT----TT----CTTCAGGGT-C-ATTTCATATAGCAA--------AC---A--------T-----------TCTACTTGACTT--CTTTA--ATACGATTG---TAGTATA-
gi|7 : TGGGAA-----GGCCAAAATGT-TCAATGGGACAATGGCC--CCATG----GTTCAAC-TTTT--CAATGCACCATTTTTTA-AATTTCATAAGC--CATT-AAAATATTTTT-GAAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAATAATAA-TT----AAAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTTGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCAT------T-TTGAAC--TTTTTCTT----C----GGGGTC-ATTTCATA-ATCAA--------AC---A--------
gi|8 : GGAA-----G-CCAAAATG--TCAATGGGACAATGGTG--CCACG----GTTCAACTTTTT--CAAT-GGCCATTTT--A-AATTTAATGGGC--CATCGAAGATATTTTT-GAAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AATAACCATTT----ACAACATATATGCTTTCTTG--TTTA-TAAAAT----ATAGCACGTATAATTTTTGTTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTAC------TATTTAACTTTT----TT----C----AGGG-C-ATTTCATA-AGCAA--------tgtgctatttgacct
gi|9 : tG---C---ATTTCATTGGT-TATCTCTAT----TGCTTCAGCCAATGAAATTCAGTGTATCAGAAC----AC-TTTG-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TTG-TACTCAATACAC-TTTG-------A-GAGAAAAACGTAAGT-TGCGATCAATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATTATTc
blockSeqs : . GG CG T CAGA T TT T G TT T TTA A A C TTT TG G C T GTAC C ATA C T . T GT T CA T AT G C CATGTATT TTTTTCTTCGGAACC T TTTAAAGCAAATATGTGCCA AA AT A TACGTA T . CAAA A A ATAT T A TTTCAT T T C C T G GT T T GTACTTCAA A G T AT C G
blockSeqs : . G . C . . . G G T . C G A . T GT . . . . G AA . T . . . . . . . A . CTA TTTTTCTTCGGGGTC . CATGTGCTACTTGACC . . C TTA . . AGTC . G . C G GCA . . C C . T . . . CGA . G . G G C
blockSeqs : . A . C . . . G G A . G . T . T A . . . . T . . T . . . . . . . A . TT TTTTCTTCAGGGTC . ACATGTGCTACTTGAC . . G GTA . . C . A . C G ACT . . C C . G . . . TGA . A . G G G
blockSeqs : . G . T . . . G G C . C . A . T A . . . . T . . T . . . . . . . A . AT GTTTTTCTTCAC . ACATTCTACTTGA . . T TA . C . C . C A AA . . . . . T . . . GG . G . A G T
blockSeqs : . G . T . . . G T C . C . A . T A . . . . A . . . . . . . . . . A . AT TTTTTTCAGGGC . ACAC . . T TT C . . . . A AC . . . . . . . . . GA . . . G .
blockSeqs : . T . T . . . G A C . C . A . . G . . . . A . . . . . . . . . . G . TT TCTTCGGGGG . . AC . .
blockSeqs : . . . C . . . G G C . C . . . . G . . . . C . . . . . . . . . . TT TCTCAT .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A TCAT .
blockSeqs : . . . . . .
blockSeqCons : ***** **** TTTTTCTTCGGGGC************ ACATGTGCTACTTGAC*************************** TTA*** AC***** G**
originalCons : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TTGAAC--TT----TT----C----GGGG-C-ATTTCATA-AGCAA--------AC---A--------C-----------C--------CTT--CTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAAC----AC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
finalCons : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTAN------T-TTGAACTTTTTCTTCGGGGC------------ATTTCATA-AGCAAACATGTGCTACTTGAC---------------------------CTT--CTTTA--ANAGCACGTTA---GTATA-AGA---AG---C---ATTTCATTGGT-TATCTNTAT----TGCTTCAACCAATGAAATTCAGTGTATCGGAACAC-----TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCCG--TTCGGCGCATGGATTGAATNATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTTG
Unaligned ( gi|16 ): AGTTTTAATCTGAATGGGACTATGGCACAGGGCACATGGCCTTCCCAATCCGT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 11111 11 111 1111 111 1111 111111 22222 222222222222 111111 111 1111111 1111 1111 1 22222222222
lowQualScore : 22222 00 66 2 9999 4 55 2 1 99 4 666 8 2 4 000 777 4 4 5 0000 1 555 5 1 0 0000 5 66 5 66 4 66 0 3 4 222222 1 4 66 1 00000 000000000000 3 99 1 555555 8 777 3333333 6 4444 7 3 6 2222 7 5 5 2 2 6 7 99 6 6 99999999999 6 1 6 888 2 1
lowQualScore : ..... .. .. . .... . .. . . .. . ... . . . ... ... . . . .... . ... . . . .... . .. . .. . .. . . . ...... . . .. . ..... ............ . .. . ...... . ... ....... . .... . . . .... . . . . . . . .. . . ........... . . . ... . .
lowQualScore : 55555 11 11 7 4444 0 55 5 6 77 0 222 9 0 4 777 000 4 4 0 6666 0 666 7 4 4 6666 0 99 0 11 4 11 4 1 4 888888 0 4 22 9 00000 333333333333 2 22 0 777777 0 555 3333333 7 2222 5 7 3 1111 1 7 7 5 5 7 2 22 7 7 33333333333 7 0 7 777 5 0
consensus : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-C------TATT-TTGAAC-TTTTTCTTCGGGG-CATTTCAT----------A-AGCAAACATGTGCTACTTGACCTTCTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATC----TNTATTGCTTCAACCAATGAAATTCAGTGTATCGGAA----CAC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
Reference ( family-180 ) : GGATTGGGAA-----GGCCAAAATGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTAAATAACAA-TT----ANAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-C------TANT-TTGAAC-TTTTTCTTCGGGG-CATTTCAT----------A-AGCAAACATGTGCTACTTGACCTTCTTTA--ANAGCACGT---TAGTATA-AGA---AG---C---ATTTCATTGGT-TATC----TNTATTGCTTCAACCAATGAAATTCAGTGTATCGGAA----CAC-TT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCAATACAC-TT-G-------A-GAGAAAAACGTAAGT-TGCGATCGATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATNATT
gi|1 : ATTGGGAATAGAAGGCCAAAGTGG-TCAATGGGACAATGGCC--CCACG----GTTCAAC-TTTT--CTATGGGCCATTTTC-A-AATTTAATGGGC--CATC-AAAATATTTTT-GAAGGGCCA--TTTTTTC-G-GTA-ATTT-TTGGAAATTATAA-TT----AAAACAT---TG-TTTCTTGGTTTGATTAAAATATTAA-AGAAC--AGAA-TTTCGTTTTC--CCACCTGCACTG-TCT--GTTG
gi|1 : aggt---C---ATTTCATTGTT-TGTC----TCTATTGTTTCAACCAATGAGATTCCGTGTATCAGTA----CACGCT-G-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TCG-TACTCGATACAC-TT-C-------AGGAGAAAAAGGTAAGT-TGCGATCGATAATGG-ATGCGCCAG-TTTGGCGCAGGGATTGAATAATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatttcattgtttgtctctattgtttcaaccaatgagattccgtgtatcagtacacgctgaaattagaaacgaaagtacaaaaaattaagtcgtactcgatacacttcaggagaaaaaggtaagttgcgatcgataatggatgcgccagtttggcgcagggattgaataatttaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|10 : aggtattgggaatagaaggccaaagtggtcaatgggacaatggccccacggttcaacttttctatgggccattttcaaatttaatgggccatcaaaatatttttgaagggccattttttcggtaatttttggaaattataattaaaacattgtttcttggtttgattaaaatattaaagaacagaatttcgttttcccacctgcactgtctgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATGTGCTACACGACCTTCTTTA--AGAGCACGT----GGTATA-AGACGAAA---C---ATTTCAATGGT-TATC----TATATTGTTTCAACCAATGAAATTCGGTGTGTCAGAA----TGCATT-G-AAATTAGAAA-AAAAGTACAAAATTAGTAAG--TCG-TACTCAATATAC-TTCG-------A-GAAAGAAACGTAA-T-T-------------G-ATGCGCA-G-TTTGATGCATCTATTGAATGATTtaatgcgctagttttaatctgaatgggaccagggcgcatggccttccctatccct
gi|11 : atgtTTCGGGT-T------CATT-TTGAAC-TTTTTCTTCGGGGTCATTTCAT----------A-ATCAAACATGTGCTATTTGACCTTCT
gi|11 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-C------TATT-TTGAACGTTTTTCTTC---A-CATTTTAT--------------CAAAacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttatcaaatgggcagatttgaa
gi|12 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgaccCAAAATGG-TCAATGGGACAATGGCC--CCATGCAGAATTCAAC-TTTT--GAATTGGCAATTTTT-A-GATTTAATAGGC--CATT-AAAATATTCTT-GAAGGGTCA---TTTTTC-A-GTA-ATTT-CTtgggcagatttgaa
gi|13 : GGATTGGGAA-----GGCCAAAATG--CCA---GGTCAATGGCCCGCCA--------TCAA---------AAT-----ATTTT------TTTAA-GGGG--AATC-----TTTTTTT-AAAAG--TA--TTTTT---------------TGTAAATAACAA-TTGTACACAACAT---
gi|14 : agATTGGGAA-----GGCCAAAATCA-TCAATGGGACTATGGCC--CCACT----GCTCAAA-TTTT--CAATGCGCCATTTTA-A-AA
gi|18 : TTCATCCAATGAAATTAAGTGTATTGGAA----CACTTT-G-GAATTataataaagtataaactgttgtttg
gi|2 : TTTAAC-TTTTTTCA--GGGC-ATTT-C-ATAAGCAACTGTGTTACATC-AAACTATTTTTCAAAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAATAGCAA-TT----AGAAAATAA-TA-TTT-TTGGTTTTATTAAAAT----A-AGCAC--ATAA--TTCGTTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--C------TAA-------------TCTTCGGGG-GCTT--AT----------A-AGC-AACATGTGCTACTTGACC-TGTTTAATAAAGCACG----TAGTATATCAA---AG---CAAAAGTTCATTGATATATC----T-TATTGCTTCAACCAATTAAATTCAGTGTATC---A----CAA-TT-GTAAATTAGAAACGAGAGTA-AAAA-AA-TAAGGTTCG-TACTCAATACACTTT-G-------G-GAG-AAAACGTAAG--TGCGATTATCAATGG-G-GCGCC-ATTTTGGCG-AT-GATTGAATCATT
gi|3 : tactaGGATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGGCC--CCACG----ATTCAAC-TTCT--CAATGGGCCATTTTC-A-AATTTAATGGGC--CATC-ATAATATTTGT-GAAGGGCCA--TTATTTC-A-GTA-GTTT-CTGTAAATAACAA-TT----ATAACAT---CG-TTTCTAGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTCATTTTC--CCACCTGCACTG-ACC--ATTGTCTTGTAAACATTTGACCTTGCCCTTCCAAAGTTTGGGGT-T------TAAT-TTGAAC-TCAT-----------ATTTCAT----------A-AGCAAAC------------ACCTTCTTTA--ACAGCACGT---TAGTATA-AGA---AG---C---ATTCCATTGGT-TATC----TGTATTG-TTTAACCAATGAAATTCAGTGTATCGAAA----CAC-TT-G-AAATTAG---------------A-AATTAAG--TCGTTAC-CAATAGAC-TT-G-------A-GAGAAAAACGTAAGTATGTGATCGATAATGGTATGCGCC-G-TTCGGCGCATGGATTGAATGATTtaatgcgccaatttcatctgaat
gi|4 : TATCAAAAT----A-AACAC--ACAA-TTTTGTTTTT--CCACCTGCAGTG-TCT--GTTGTCTGGTCTACATTTAACCTTGCTCTTCCAAAGTTTCGGGT-CTACATGTATT-TTTAAC-TTTTTCTTCGGAACCATTTCATAAGCAATTTAA-AGCAAATATGTGCCACTTAACC----TTA--AGAGCATGT---T-GTATA-AGA---AGAGTC---ATTTCATTGGT-TATCTATATATATTGCTTTAACCAGTGAAATTCAGTGTATCAGAACTTTCAT-TT-G-GAATTAGAAACAAAAGTACAAAA-AAGTAAG--TCA-TACTCAATATAC-AT-GTACTTCAA-GAGAAAAATGTAGGT-TACAATCGACAATGG-ATGCGCA-A-TTCGGTGCATGGATCGAAT
gi|5 : GATTGGGAA-----GGCCAAAATGG-TCAATGGGACTATGACC--CCATA----TTTCAAC-TTTT--CGATGGTCCATTTTC-A-AACTTAATGGGC--CATC-A---TATTTGT-GAAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAATAACAA-TC----ATAACAT---TG-TCTCTTGGTTTTAATAAAAT----A-AGCCC--ATAA-TTTCATTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-C------TAAT-TTGA-----TCTCAT-------ATTTCAT----------A-AGCAAACATGTGCTACTTGACCTTCTTTA--ATAGCACGTACGTAGTgtgccaattttcatcagaatgggactatggcgca
gi|6 : GATTGAGAA-----GGCCAAAATGGGTCAATGG-ACAATG-CC--CCATG----GTTCA-C-TTTT--CAATGG--CATTTTC-A-A-TTTAATGGG---CATCAAAAATATTTTT-GAAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAATAATAA-TT----AAACAAT---TG-TGTTTTGG-TTTATT-------------------TAA-TTTCGTTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCC------TATT-TTGAAC--TTTTCTTCAGGGTCATTTCAT----------ATAGCAAACAT-T-CTACTTGA-CTTCTTTA--ATACGATTG---TAGTATA-
gi|7 : TGGGAA-----GGCCAAAATGT-TCAATGGGACAATGGCC--CCATG----GTTCAAC-TTTT--CAATGCACCATTTTTTA-AATTTCATAAGC--CATT-AAAATATTTTT-GAAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAATAATAA-TT----AAAACAT---TG-TTTCTTGGTTTTATTAAAAT----A-AGCAC--ATAA-TTTTGTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-T------CATT-TTGAAC-TTTTTCTTCGGGGTCATTTCAT----------A-ATCAAACATGTGCTATTTGACCT
gi|8 : GGAA-----G-CCAAAATG--TCAATGGGACAATGGTG--CCACG----GTTCAACTTTTT--CAAT-GGCCATTTT--A-AATTTAATGGGC--CATCGAAGATATTTTT-GAAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AATAACCATTT----ACAACATATATGCTTTCTTG--TTTA-TAAAAT----ATAGCACGTATAATTTTTGTTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-C------TACTATTTAAC-TTTT--TTCAGGG-CATTTCAT----------A-AGCAA
gi|9 : tG---C---ATTTCATTGGT-TATC----TCTATTGCTTCAGCCAATGAAATTCAGTGTATCAGAA----CAC-TTTG-AAATTAGAAACGAAAGTACAAAA-AATTAAG--TTG-TACTCAATACAC-TTTG-------A-GAGAAAAACGTAAGT-TGCGATCAATAATGG-ATGCGCC-G-TTCGGCGCATGGATTGAATTATTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTTG
Unaligned ( gi|16 ): AGTTTTAATCTGAATGGGACTATGGCACAGGGCACATGGCCTTCCCAATCCGT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG