lowQualScore : 11111111 1111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4444 222 22 1 22222222 1 11 11 1 3333333 6666 11 1 777 1 9999999999999999999999999999999999999999999999999999999999999999999999999 22222222 1111 4444444444444 1111 111 1 3333333333333 11111 3333 1 111111 22222 222 11 6666666666666 22
lowQualScore : 7 2222 6 777 33 7 6 88888888 5 22 22 7 1111111 6 3333 6 22 6 5 000 6 5 0000000000000000000000000000000000000000000000000000000000000000000000000 7 7 7 77777777 0 4444 3 1111111111111 3333 44 555 88 5 1 777 1111111111111 00000 4 3 888 1111 1 5 666666 5 66 7 66 2 33333 66 5 222 3 77 2222222222222 6 4 11
lowQualScore : . .... . ... .. . . ........ . .. .. . ....... . .... . .. . . ... . . ......................................................................... . . . ........ . .... . ............. .... .. ... .. . . ... ............. ..... . . ... .... . . ...... . .. . .. . ..... .. . ... . .. ............. . . ..
lowQualScore : 0 0000 0 000 00 0 0 00000000 0 00 00 0 0000000 0 0000 0 00 0 0 000 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000 7 3 3 00000000 2 2222 5 0000000000000 0000 88 000 22 2 4 888 8888888888888 77777 4 1 888 0000 4 7 444444 0 99 4 99 2 66666 99 0 333 8 33 8888888888888 0 0 00
consensus : GAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACA---TTAGAAAATTCAAACTCTGTAAG----TTAC--CNT-A------ACAGAT----ATG-------AAAA--TTTAAAA---------NATCAGGTNATATATTGCTGACCNNCCTT----TATTCA-------T---NTGTTACAAAACAAAGTATGT-CACAGCTTGATGATGGCTG---AT-------AC----TACCCTA-AGT-AAAGTTCTACA---ACTTNTGGCAT-T-T------T-TGCCGTGTTTGCTAA--TCAATG--TCA--TAGA--A-AACAA--ACATCTT-ACA--ANCATNTGACNGGTGTNTTATGTACC
Reference ( gi|1 ) : GAGGTTAAAGAGC-TATGAGAACCTACGAAATATATTATAAAAGGAAAGTACTGTATTACAGTCATATAATATCAAGCTGATG----A--GATAGATTTTGCAT--AAACTCTTGCAAAAACATATTTTATTGTTACATTTTTAAAAAATGCAAAA---ATAAG----TTAC--CCTAA------ATAGAT----ATG-------AAAA--TTTAAAA---------GATCAGGTAATATATTGCTGATCAACCTT----TATTCT-------T---TTGCTATAAAACAAAGTATGC-CACAATTTGATTATGGCTG---AT-------AC----TACTTTA-AGT-AAAGTTCTGCA---ACGCCCGGCAT-T-T------T-TGCCATGTTTGCTAA--TTAATG--TTA--T--A--A-AACAA--TCATCTT-ACA--AT--TCTAACGGGCGTATTACTTACCG
gi|2 : GAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACA---TTAGAAAATTCAAACTCTGTGAGATATTTACATCATCATTATTGATAGGTTA--ATGTATGATTAAGA--TATAAAAAGTAAAAAAGACAAGGTTATACATTGCTAACCTTCCTT----TTTTCC-------T---GTGTTACAAAACAA
gi|3 : atgtcttgttgaatgagagagctaTAAG----CTAC--CT------------GATGTCAATG-------AAAA--TTTGAAT---------TATCATGTCA-ATATTG-TGAT-GGCCTTCACTTATTCA-------TACATTGC---AAAATTAGAAATGT-CACATCTTGATGACTGCTG---AT-------GTAATGTATTCTA-CGTTAAAGTTTTACA---ACTTGTGACAT-T-T------T-TGCTACATTTGCAAA--TCGATG--TCA--TAGA--A-AGCAA--ACACCCT-
gi|8 : acAAG----T-AC--CCTGA------ACAGAT----GTG-------AAAAGTTTTAAAA---------AGTCAGGTAATAT-TTGC---CCGACTTT----T-TTATGTGTATGT---TTGC----AAAC-AAGTATCCTCATAA-TTGGTGATGGCTG---TT-------GC----TATACTC-AAT-TAAGTTCgaaaaaaccaccctacactagcttgtaatggatgtatctcatgtatgtacat
gi|4 : CTGACCTTCATT----TATTCA-------T---GTGTTACAA------GTATGT-CACAGTCTGATGATGGTTG---ATCAATGCTACATG-TACCTTA-CAT-AAAATTCTATA---ACTCCTGGCAT-TTT------T-TGCCATGTTTGCAAAATTCAATG--TTA--T--A--G-AA
gi|5 : TC----TATTCA-------T---ATAATGCAAAAGAAAATAT---CACAAC--GATGATGGCTG---AT-------AT----TACTGTGCAGT-AAAGTTCTAC-----CAGTCAACATAT-T------TATACTGTGTTTGCTAA--TCAATG--CCA--TAGA--A-AACAAATTC--CTT--CA--AGCATGTGACAGATATATTATGTACCaagaaacactactttagtaaaaatgttctacatagctt
gi|12 : tTT----TATTCA-------T---CTGTTACAAAACAAAGTCTAT-CACAGCTTGATAATGGCTG---AT-------AG----TGTCTGT-AGT-AAAGTTCTACA---Aatt
gi|6 : ttacctcctgtctcagtttctactctagaatatTGTTACAGAACAAAGTATTT-CACAGCTTGGTGAATGCTGCATGT-------ACAATGTAC---A-AGT-A--GTGTTGCATTAAC-TCTGTCGT-T-T------C-AACCATGTTTGCTAA--TCAGTG--TCA--C--A--ATAATTA--ACGTCTT-ACATTAT--TC---CTGGTGTTTTA
gi|20 : ATAAAAGAGAGTATGC-CAGAGCTTGATGATAACTG---AT-------AC----TACCTTA-
gi|19 : ACAATTTGATGATTGTTG---AT-------AC----TACCTTA-AGA-AAAGCCCTGCA---A
gi|9 : tggtTG---AT-------AC----TACCCGA-CAT-ACAATTCTACA---ATTTATGGCATGT-TTGCCAAT-TGCCATGATTGTTAA--TAAATG--TCATTT--A--A-AACAA--
gi|11 : tacg-AAAGTCCTCCA---ACTTGTGGCAT-T-T------T-TGCTGTATTTGCTAA--TCAGTGTCTTA--A--A--A-AATAAACTCATCaattctctataaaaatatccaacatgagcttgt
gi|14 : T-T-T------T-TGTCATGTTTGCTAG--TCAATG--TCA--TAGA--A-AACAA--aatagagcaccctgtgtattgtgcattgtgtcatatgttataaata
gi|7 : caacttgtggtat-TGCCATATTTGTTAA--TCGATG--TCA--T--AGAA-AACAA--ACATCTTAACA--Aatgccataaataatgaaaataaaacattctgcatatc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTCTACAATTTGTGCATTTTTGCTAATTAATATATCATAGAAAACTAAAGTCCATTATAAAAACACCCTACATAAACTGGTGATGGGTGTATTATGTTCTTTTTCTGGTACTTC
Unaligned ( gi|13 ): TAATCAATATCATAGAAAACAAACACCATAATAGAAAACACTCTACAGGAGCTTATGGTAGGCATATTATGTACTGTTTCTGGTATCCTTGTTAT
Unaligned ( gi|15 ): AAAACACCCTACATAAGATTGTGAGGGGTGTATCATGTATCGTTTTTGTTAAACTTGTTGGAAT
Unaligned ( gi|16 ): AAGAAACCACCCTAAACTAGCTTGTGATGGGTGTATTATTGTACTGTTTCTGTACT
Unaligned ( gi|17 ): ATGCTTCAAAGTTCGACAACTTGGGACATTTTTTGTCATGTCATAGAAAACAAA
Unaligned ( gi|18 ): CTTTTGGTACTGCTTTTCATGTTTGCTAATCAATGTTTCATACAAAACGAAT
Alignments
lowQualScore : 1 555555 3333333 11 333 2222 2222 88888888888888888888888888888888 11 33333333 1 1111 11111111111 2222 111111111111111 33333333333333333 111111111
lowQualScore : 4 5 3 4 4 333333 2 4 3333333 4 88 2 555 3 3333 1111 3 11111111111111111111111111111111 33 1 66666666 0 1 3 3 3333 7777 0 1 4 0 2 99 0 0 55555555555 4444 55 4 3 3 2 0 3 3 44 999999 44 55 44 44 44 0 999999999999999 1 44444444444444444 5 444444444 1 3 1 1
lowQualScore : . . . . . ...... . . ....... . .. . ... . .... .... . ................................ .. . ........ . . . . .... .... . . . . . .. . . ........... .... .. . . . . . . . .. ...... .. .. .. .. .. . ............... . ................. . ......... . . . .
lowQualScore : 0 0 0 0 0 555555 5 0 5555555 0 55 5 000 0 5555 2222 2 00000000000000000000000000000000 88 0 22222222 0 0 2 2 0000 0000 3 0 4 1 0 55 9 1 11111111111 0000 33 0 3 1 2 2 3 3 66 666666 33 11 22 22 22 8 222222222222222 0 88888888888888888 0 555555555 0 2 0 0
consensus : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTACCCT-AA-CA-----GATG-----ATG-------AAAA--TTTAAAAAGT--------C-AGGTNATATATTGC--T-GACCTTCNTTTATTCATNTGTT-ACAAAACAAAGTATG-TCACAGCTTGATGATGGCTG---A-------TAC----TACCTTA-AGT-AAAGTTCTA-CAACTCGTGGCA-T-T--T------TT-GCCATGTTTGCTAA--TCAATG--T--CATAGAAAAC---------------AAACATC---------------C-T-AC--A--ANCATNTGACGGGCGTATTATGTACC
Reference ( family-1769 ) : GAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACATT---AGAAAATTCAAACTCTGTAAG----TTACCNT-AA-CA-----GAT------ATG-------AAAA--TTTAAAANAT--------C-AGGTNATATATTGC--T-GACCNNCCTTTATTCATNTGTT-ACAAAACAAAGTATG-TCACAGCTTGATGATGGCTG---A-------TAC----TACCCTA-AGT-AAAGTTCTA-CAACTTNTGGCA-T-T--T------TT-GCCGTGTTTGCTAA--TCAATG--T--CATAGAAAAC---------------AAACATC---------------T-T-AC--A--ANCATNTGACNGGTGTNTTATGTACC
gi|1 : GAGGTTAAAGAGC-TATGAGAACCTACGAAATATATTATAAAAGGAAAGTACTGTATTACAGTCATATAATATCAAGCTGATG----A--GATAGATTTTGCAT--AAACTCTTGCAAAAACATATTTTATTGTTACATTTTTAAAAAATGCAAAA---ATAAG----TTACCCT-AAATA-----GAT------ATG-------AAAA--TTTAAAAGAT--------C-AGGTAATATATTGC--T-GATCAACCTTTATTCTTTTGCT-ATAAAACAAAGTATG-CCACAATTTGATTATGGCTG---A-------TAC----TACTTTA-AGT-AAAGTTCTG-CAACGCCCGGCA-T-T--T------TT-GCCATGTTTGCTAA--TTAATG--T--TAT--AAAAC---------------AATCATC---------------T-T-AC--A--AT--TCTAACGGGCGTATTACTTACC
gi|10 : TTCTA-CAATTTGTG-CA-T-T--T------TT-GC---------TAA--TTAATA--TATCATAGAAAACTAAAGTCCATTATAAAAACACC---------------C-T-ACATA--AACTGGTGATGGGTGTATTATGTg
gi|11 : -AAAGTCCTC-CAACTTGTGGCA-T-T--T------TT-GCTGTATTTGCTAA--TCAGTG--T--CTTAAAAAAT---------------AAACtctttttctggtacttc
gi|12 : TTTATTCATCTGTT-ACAAAACAAAGTCTA-TCACAGCTTGATAATGGCTG---A-------TAG----TGTCTGT-AGT-AAAGTTCTA-CAAtcatcaatagagcaccctgtgtattgtgcattgtgtcatatgttataaata
gi|13 : ttacctcctgtctcagtttctactctagaatatTAA--TCAATA--T--CATAGAAAAC---------------AAACACCATAATAGAAAACACTC-T-AC--AGGAGCTTATGGTAGGCATATTATGTAC
gi|14 : -CAACTTGTGGTA-T-T--T------TTTGTCATGTTTGCTAG--TCAATG--T--CATAGAAAAC---------------AAAtgtttctggtatccttgttat
gi|17 : -AAAGTTCGA-CAACTTGGGACA-T-T--T------TT-----TGTC-----------ATG--T--CATAGAAAAC---------------AAAtgccataaataatgaaaataaaacattctgcatatc
gi|18 : atgcttcCTTTTGGTA-C-TGCT------TT--TCATGTTTGCTAA--TCAATGTTT--CATACAAAAC---------------GAA
gi|19 : ACAATTTGATGATTGTTG---A-------TAC----TACCTTA-AGA-AAAGCCCTG-CAAt
gi|2 : tggtGAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACATT---AGAAAATTCAAACTCTGTGAGATATTTACATC-AT-CATTATTGATAGGTTAATGTATGATTAAGA--TATAAAAAGTAAAAAAGACAAGGTTATACATTGC--T-AACCTTCCTTTTTTCCTGTGTT-ACAAAACAA
gi|20 : atgtcttgttgaatgagagagcta-ATAAAAGAGAGTATG-CCAGAGCTTGATGATAACTG---A-------TAC----TACCTTA-
gi|3 : TAAG----CTACCT------------GATGTCA--ATG-------AAAA--TTTGAATTAT--------C-ATGTCA-ATATTGTGAT-GGCCTTCACTTATTCATACATT-GCAAAATTAGAAATG-TCACATCTTGATGACTGCTG---A-------TGTAATGTATTCTA-CGTTAAAGTTTTA-CAACTTGTGACA-T-T--T------TT-GCTACATTTGCAAA--TCGATG--T--CATAGAAAGC---------------AAACACC---------------C-T-
gi|4 : acC--T-GACCTTCATTTATTCATGTGTT-ACAA------GTATG-TCACAGTCTGATGATGGTTG---ATCAATGCTACATG-TACCTTA-CAT-AAAATTCTA-TAACTCCTGGCATT-T--T------TT-GCCATGTTTGCAAAATTCAATG--T--TATAGAAAAG---------------AAACAgaaaaaaccaccctacactagcttgtaatggatgtatctcatgtatgtacat
gi|5 : TCTATTCATATAAT-GCAAAAGAAAATAT---CACAAC--GATGATGGCTG---A-------TAT----TACTGTGCAGT-AAAGTTCTA-CCAGTCAACATA-T-T--T------AT-ACTGTGTTTGCTAA--TCAATG--C--CATAGAAAAC---------------AAAT-TC---------------C-T-TC--A--AGCATGTGACAGATATATTATGTACCctactttagtaaaaatgttctacatagctt
gi|6 : tTGTT-ACAGAACAAAGTATT-TCACAGCTTGGTGAATGCTGCATG-------TACAATGTAC---A-AGT-AGTGTTGCATTAAC-TCTGTCG-T-T--T------CA-ACCATGTTTGCTAA--TCAGTG--T--CACA-ATAAT---------------TAACGTC---------------T-T-AC-----ATTATTC--CTGGTGTTTTAatt
gi|7 : T-AGAGGTCTA-TA------GGCC-T-A--T------AT-GCCATATTTGTTAA--TCGATG--T--CATAGAAAAC---------------AAACATC---------------T-TAAC--A--A
gi|8 : taaattgcaatgtaaatgtataatgattttttatagttgtaagaacttgtattataAAG----T-ACCCTGAA-CA-----GAT------GTG-------AAAAGTTTTAAAAAGT--------C-AGGTAATAT-TTGC--CCGACTTT--TTTATGTGTATGTTTGCAAA-CAA-GTATCCTCATAA-TTGGTGATGGCTG---T-------TGC----TATACTC-AAT-TAAGTTCaaacaccctacatttat
gi|9 : TG---A-------TAC----TACCCGA-CAT-ACAATTCTA-CAATTTATGGCA-TGT--TTGCCAATT-GCCATGATTGTTAA--TAAATG--T--CATTTAAAAC---------------AAAATTC---------------TCT-AT--A--AAAATAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAACACCCTACATAAGATTGTGAGGGGTGTATCATGTATCGTTTTTGTTAAACTTGTTGGAAT
Unaligned ( gi|16 ): AAGAAACCACCCTAAACTAGCTTGTGATGGGTGTATTATTGTACTGTTTCTGTACT
Alignments
lowQualScore : 1 333333 3333333 11 222 2222 88888888888888888888888888888888888888888 11 33333333 1 1111 2222222222222 111111111111111 333333333333333 111
lowQualScore : 1 5 1 1 1 000000 1 1 3333333 1 88 1 111 1 2222 88888888888888888888888888888888888888888 33 1 66666666 0 1 3 3 2222 3 0 1 5 22 99 0 0 777 6666666666666 4 44 3 3 55 6 999999 44 44 44 0 999999999999999 22 222222222222222 4 66 77 222 1
lowQualScore : . . . . . ...... . . ....... . .. . ... . .... ......................................... .. . ........ . . . . .... . . . . .. .. . . ... ............. . .. . . .. . ...... .. .. .. . ............... .. ............... . .. .. ... .
lowQualScore : 0 0 0 0 0 000000 0 0 5555555 0 55 0 555 0 0000 22222222222222222222222222222222222222222 88 2 22222222 0 0 2 2 2222 8 3 0 0 11 55 9 1 000 7777777777777 0 44 3 1 33 7 666666 33 22 22 8 222222222222222 44 222222222222222 4 99 99 222 0
consensus : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--C-------CTGAATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAACATC---------------CT-AC--A--AGCNTGTGACGGGCGTATTATGTACC
Reference ( family-1769 ) : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--C-------CT-AACAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAACATC---------------CT-AC--A--ANCATNTGACGGGCGTATTATGTACC
gi|1 : GAGGTTAAAGAGC-TATGAGAACCTACGAAATATATTATAAAAGGAAAGTACTGTATTACAGTCATATAATATCAAGCTGATG----A--GATAGATTTTGCAT--AAACTCTTGCAAAAACATATTTTATTGTTACATTTTTAAAAAATGCAAAA---ATAAG----TTAC--C-------CTAAATAG--------AT----ATGAAAA--TTTAAAAGAT--------C-AGGTAATATATTG-C--TGATCAACCTTTATTCTTTTG-CTATAAAACAAAGTAT-GCCACAATTTGATTATGGCTG---AT-------AC----TAC-TTTA-AGT-AAAGTTCTG-CAACGCCCGGCAT-TT------TT-GCCATGTTTGCTAA--TTAATG--TTAT--AAAAC---------------AATCATC---------------TT-AC--A--AT--TCTAACGGGCGTATTACTTACC
gi|10 : TTCTA-CAATTTGT-GCAT-TT------TT-GCTA-----ATTAA--T--ATA--TCATAGAAAACTAAAGTCCATTATAAAAACACC---------------CT-ACATA--AACTGGTGATGGGTGTATTATGTg
gi|11 : -AAAGTCCTC-CAACTTGTGGCAT-TT------TT-GCTGTATTTGCTAA--TCAGTG--TCTTAAAAAAT---------------AAACtctttttctggtacttc
gi|12 : TTTATTCATCTG-TTACAAAACAAAGTCT-ATCACAGCTTGATAATGGCTG---AT-------AG----TGT-CTGT-AGT-AAAGTTCTA-CAAtcatcaatagagcaccctgtgtattgtgcattgtgtcatatgttataaata
gi|13 : ttacctcctgtctcagtttctactctagaatatTAA--TCAATA--TCATAGAAAAC---------------AAACACCATAATAGAAAACACTCT-AC--AGGAGCTTATGGTAGGCATATTATGTAC
gi|14 : -CAACTTGTGGTAT-TT------TTTGTCATGTTTGCTAG--TCAATG--TCATAGAAAAC---------------AAAtgtttctggtatccttgttat
gi|17 : -AAAGTTCGA-CAACTTGGGACAT-TT------TT-----TGTC-----------ATG--TCATAGAAAAC---------------AAAtgccataaataatgaaaataaaacattctgcatatc
gi|18 : atgcttc-TT------TT---CATGTTTGCTAA--TCAATGTTTCATACAAAAC---------------GAA
gi|19 : cttttggtactgcACAATTTGATGATTGTTG---AT-------AC----TAC-CTTA-AGA-AAAGCCCTG-CAAt
gi|2 : tggtGAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACA---TTAGAAAATTCAAACTCTGTGAGATATTTACATCATCATTATT-GATAGGTTAATGTATG---ATTAAGA--TATAAAAAGTAAAAAAGACAAGGTTATACATTG-C--TAACCTTCCTTTTTTCCTGTG-TTACAAAACAA
gi|20 : atgtcttgttgaatgagagagctaATAAAAGAGAGTAT-GCCAGAGCTTGATGATAACTG---AT-------AC----TAC-CTTA-
gi|3 : TAAG----CTAC--C-------T------G--------ATGTCAATGAAAA--TTTGAATTAT--------C-ATGTCA-ATATTG-TGATGGCCTTCACTTATTCATACA-TTGCAAAATTAGAAAT-GTCACATCTTGATGACTGCTG---AT-------GTAATGTAT-TCTA-CGTTAAAGTTTTA-CAACTTGTGACAT-TT------TT-GCTACATTTGCAAA--TCGATG--TCATAGAAAGC---------------AAACACC---------------CT-
gi|4 : ac-C--TGACCTTCATTTATTCATGTG-TTACAA------GTAT-GTCACAGTCTGATGATGGTTG---ATCAATGCTACATG-TAC-CTTA-CAT-AAAATTCTA-TAACTCCTGGCATTTT------TT-GCCATGTTTGCAAAATTCAATG--TTATAGAAAAG---------------AAACA-----------------CT-AC--gaaaaaaccaccctacactagcttgtaatggatgtatctcatgtatgtacat
gi|5 : TCTATTCATATA-ATGCAAAAGAAAATAT---CACAAC--GATGATGGCTG---AT-------AT----TAC-TGTGCAGT-AAAGTTCTA-CCAGTCAACATAT-TT------AT-ACTGTGTTTGCTAA--TCAATG--CCATAGAAAAC---------------AAAT-TC---------------CT-TC--A--AGCATGTGACAGATATATTATGTACCtttagtaaaaatgttctacatagctt
gi|6 : tTG-TTACAGAACAAAGTAT-TTCACAGCTTGGTGAATGCTGCATGT-------ACAATGTAC----A-AGT-AGTGTTGCATTAACTC-TGTCGT-TT------CA-ACCATGTTTGCTAA--TCAGTG--TCACA-ATAAT---------------TAACGTC---------------TT-AC--A--att
gi|7 : TTA-TAT-AGAGGTCTA-TA------GGCCT-AT------AT-GCCATATTTGTTAA--TCGATG--TCATAGAAAAC---------------AAACATC---------------TTAAC--A--Attattcctggtgtttta
gi|8 : taaattgcaatgtaaatgtataatgattttttatagttgtaagaacttgtaAAG----T-AC--C-------CTGAACAG--------ATG----TGAAAAGTTTTAAAAAGT--------C-AGGTAATAT-TTGCC--CGACTTT--TTTATGTGTATGTTTGC-AAAC-AAGTATCCTCATAA-TTGGTGATGGCTG---TT-------GC----TATACTCA-ATT--AAGTTCaaacaccctacatttat
gi|9 : TG---AT-------AC----TAC-CCGA-CAT-ACAATTCTA-CAATTTATGGCATGTTTGCCAATT-GCCATGATTGTTAA--TAAATG--TCATTTAAAAC---------------AAAATTCT--------------CT-AT--A--AAAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAACACCCTACATAAGATTGTGAGGGGTGTATCATGTATCGTTTTTGTTAAACTTGTTGGAAT
Unaligned ( gi|16 ): AAGAAACCACCCTAAACTAGCTTGTGATGGGTGTATTATTGTACTGTTTCTGTACT
Alignments
lowQualScore : 1 333333 3333333 11 222 2222 6666666666666666666666666666666666666666 11 33333333 1 1111 2222222222222 111111111111111 3333333333333333333333333333333333 22 111111
lowQualScore : 1 5 1 1 1 000000 1 1 3333333 1 88 1 111 1 2222 6666666666666666666666666666666666666666 33 1 66666666 0 1 3 3 2222 3 0 1 5 22 99 0 0 777 6666666666666 4 44 3 3 55 6 999999 44 44 44 0 777777777777777 4444444444444444444444444444444444 4 66 00 1 1 0 0 999999 6
lowQualScore : . . . . . ...... . . ....... . .. . ... . .... ........................................ .. . ........ . . . . .... . . . . .. .. . . ... ............. . .. . . .. . ...... .. .. .. . ............... .................................. . .. .. . . . . ...... .
lowQualScore : 0 0 0 0 0 000000 0 0 5555555 0 55 0 555 0 0000 0000000000000000000000000000000000000000 88 2 22222222 0 0 2 2 2222 8 3 0 0 11 55 9 1 000 7777777777777 0 44 3 1 33 7 666666 33 22 22 8 999999999999999 8888888888888888888888888888888888 0 11 66 0 0 7 7 222222 7
consensus : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-ACC---------------CT-AC--A--AGCTTGTGACGGGCGTAT------TA-TGTACC
Reference ( family-1769 ) : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTGA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-ATC---------------CT-AC--A--AGCNTGTGACGGGCGTAT------TA-TGTACC
gi|1 : GAGGTTAAAGAGC-TATGAGAACCTACGAAATATATTATAAAAGGAAAGTACTGTATTACAGTCATATAATATCAAGCTGATG----A--GATAGATTTTGCAT--AAACTCTTGCAAAAACATATTTTATTGTTACATTTTTAAAAAATGCAAAA---ATAAG----TTAC--CCTAA------ATAG--------AT----ATGAAAA--TTTAAAAGAT--------C-AGGTAATATATTG-C--TGATCAACCTTTATTCTTTTG-CTATAAAACAAAGTAT-GCCACAATTTGATTATGGCTG---AT-------AC----TAC-TTTA-AGT-AAAGTTCTG-CAACGCCCGGCAT-TT------TT-GCCATGTTTGCTAA--TTAATG--TTAT--AAAAC---------------AAT--------------C-ATC---------------TT-AC--A--A--TTCTAACGGGCGTAT------TA-CTTACC
gi|10 : TTCTA-CAATTTGT-GCAT-TT------TT-GCTA-----ATTAA--T--ATA--TCATAGAAAACTAAAGTCCATTATAAAAA--------------C-ACC---------------CT-ACATA--AACTGGTGATGGGTGTAT------TA-TGTg
gi|11 : -AAAGTCCTC-CAACTTGTGGCAT-TT------TT-GCTGTATTTGCTAA--TCAGTG--TCTTAAAAAAT---------------AAA--------------C-tctttttctggtacttc
gi|12 : TTTATTCATCTG-TTACAAAACAAAGTCT-ATCACAGCTTGATAATGGCTG---AT-------AG----TGT-CTGT-AGT-AAAGTTCTA-CAAtcatcaatagagcaccctgtgtattgtgcattgtgtcatatgttataaata
gi|13 : ttacctcctgtctcagtttctactctagaatatTAA--TCAATA--TCATAGAAAAC---------------AAA--------------C-ACCATAATAGAAAACACTCT-AC--AGGAGCTTATGGTAGGCATAT------TA-TGTAC
gi|14 : -CAACTTGTGGTAT-TT------TTTGTCATGTTTGCTAG--TCAATG--TCATAGAAAAC---------------AAA--------------tgtttctggtatccttgttat
gi|16 : AAG---------------AAA--------------CCACC---------------CT-AA--ACTAGCTTGTGATGGGTGTAT------TATTGTACtgccataaataatgaaaataaaacattctgcatatc
gi|17 : -AAAGTTCGA-CAACTTGGGACAT-TT------TT-----TGTC-----------ATG--TCATAGAAAAC---------------AAA--------------tgtttctgtact
gi|18 : atgcttc-TT------TT---CATGTTTGCTAA--TCAATGTTTCATACAAAAC---------------GAA--------------
gi|19 : cttttggtactgcACAATTTGATGATTGTTG---AT-------AC----TAC-CTTA-AGA-AAAGCCCTG-CAAt
gi|2 : tggtGAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACA---TTAGAAAATTCAAACTCTGTGAGATATTTACATCATCATTATTGATAGGTTAATGTATG---ATTAAGA--TATAAAAAGTAAAAAAGACAAGGTTATACATTG-C--TAACCTTCCTTTTTTCCTGTG-TTACAAAACAA
gi|20 : atgtcttgttgaatgagagagctaATAAAAGAGAGTAT-GCCAGAGCTTGATGATAACTG---AT-------AC----TAC-CTTA-
gi|3 : TAAG----CTAC--CT------------G--------ATGTCAATGAAAA--TTTGAATTAT--------C-ATGTCA-ATATTG-TGATGGCCTTCACTTATTCATACA-TTGCAAAATTAGAAAT-GTCACATCTTGATGACTGCTG---AT-------GTAATGTAT-TCTA-CGTTAAAGTTTTA-CAACTTGTGACAT-TT------TT-GCTACATTTGCAAA--TCGATG--TCATAGAAAGC---------------AAACACCCTGAAAAAACC-ACC---------------CT-AC--ACTAGCTTGTAATGGATGTATCTCATGTA-TGTAC
gi|4 : ac-C--TGACCTTCATTTATTCATGTG-TTACAA------GTAT-GTCACAGTCTGATGATGGTTG---ATCAATGCTACATG-TAC-CTTA-CAT-AAAATTCTA-TAACTCCTGGCATTTT------TT-GCCATGTTTGCAAAATTCAATG--TTATAGAAAAG---------------AAA--------------C-A-----------------CT-AC--at
gi|5 : TCTATTCATATA-ATGCAAAAGAAAATAT---CACAAC--GATGATGGCTG---AT-------AT----TAC-TGTGCAGT-AAAGTTCTA-CCAGTCAACATAT-TT------AT-ACTGTGTTTGCTAA--TCAATG--CCATAGAAAAC---------------AAA--------------T--TC---------------CT-TC--A--AGCATGTGACAGATATAT------TA-TGTACCtttagtaaaaatgttctacatagctt
gi|6 : tTG-TTACAGAACAAAGTAT-TTCACAGCTTGGTGAATGCTGCATGT-------ACAATGTAC----A-AGT-AGTGTTGCATTAACTC-TGTCGT-TT------CA-ACCATGTTTGCTAA--TCAGTG--TCACA-ATAAT---------------TAA--------------C-GTC---------------TT-AC--A--att
gi|7 : TTA-TAT-AGAGGTCTA-TA------GGCCT-AT------AT-GCCATATTTGTTAA--TCGATG--TCATAGAAAAC---------------AAA--------------C-ATC---------------TTAAC--A--Attattcctggtgtttta
gi|8 : taaattgcaatgtaaatgtataatgattttttatagttgtaagaacttgtaAAG----T-AC--CCTGA------ACAG--------ATG----TGAAAAGTTTTAAAAAGT--------C-AGGTAATAT-TTGCC--CGACTTT--TTTATGTGTATGTTTGC-AAAC-AAGTATCCTCATAA-TTGGTGATGGCTG---TT-------GC----TATACTCA-ATT--AAGTTCaaacaccctacatttat
gi|9 : TG---AT-------AC----TAC-CCGA-CAT-ACAATTCTA-CAATTTATGGCATGTTTGCCAATT-GCCATGATTGTTAA--TAAATG--TCATTTAAAAC---------------AAA----------------ATT---------------CT-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAACACCCTACATAAGATTGTGAGGGGTGTATCATGTATCGTTTTTGTTAAACTTGTTGGAAT
Alignments
lowQualScore : 1 333333 3333333 11 222 2222 6666666666666666666666666666666666666666 11 33333333 1 1111 2222222222222 111111111111111 11111111111111 2222222222222222222222222 111111
lowQualScore : 1 5 1 1 1 000000 1 1 3333333 1 88 1 111 1 2222 4444444444444444444444444444444444444444 33 1 66666666 0 1 3 3 2222 3 0 1 5 22 99 0 0 777 6666666666666 4 44 3 3 55 1 6 999999 44 44 44 0 666666666666666 55555555555555 3 5555555555555555555555555 2 1 666666 5
lowQualScore : . . . . . ...... . . ....... . .. . ... . .... ........................................ .. . ........ . . . . .... . . . . .. .. . . ... ............. . .. . . .. . . ...... .. .. .. . ............... .............. . ......................... . . ...... .
lowQualScore : 0 0 0 0 0 000000 0 0 5555555 0 55 0 555 0 0000 0000000000000000000000000000000000000000 88 2 22222222 0 0 2 2 2222 8 3 0 0 11 55 9 1 000 7777777777777 0 44 3 1 33 2 7 666666 33 22 22 8 777777777777777 77777777777777 3 2222222222222222222222222 7 4 444444 7
consensus : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-ACC---------------CT-AC--A--AGCTTGTGACGGGCGTAT------TA-TGTACC
Reference ( family-1769 ) : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-ACC---------------CT-AC--A--AGCTTGTGACGGGCGTAT------TA-TGTACC
gi|1 : GAGGTTAAAGAGC-TATGAGAACCTACGAAATATATTATAAAAGGAAAGTACTGTATTACAGTCATATAATATCAAGCTGATG----A--GATAGATTTTGCAT--AAACTCTTGCAAAAACATATTTTATTGTTACATTTTTAAAAAATGCAAAA---ATAAG----TTAC--CCTAA------ATAG--------AT----ATGAAAA--TTTAAAAGAT--------C-AGGTAATATATTG-C--TGATCAACCTTTATTCTTTTG-CTATAAAACAAAGTAT-GCCACAATTTGATTATGGCTG---AT-------AC----TAC-TTTA-AGT-AAAGTTCTG-CAACGCCCGGCAT-TT------TT-GCCATGTTTGCTAA--TTAATG--TTAT--AAAAC---------------AAT--------------C-ATC---------------TT-AC--A--A--TTCTAACGGGCGTAT------TA-CTTACC
gi|10 : TTCTA-CAATTTGTG-CAT-TT------TT-GCTA-----ATTAA--T--ATA--TCATAGAAAACTAAAGTCCATTATAAAAA--------------C-ACC---------------CT-AC--ATAAACTGGTGATGGGTGTAT------TA-TGTg
gi|11 : -AAAGTCCTC-CAACTTGTGGCAT-TT------TT-GCTGTATTTGCTAA--TCAGTG--TCTTAAAAAAT---------------AAA--------------C-tctttttctggtacttc
gi|12 : TTTATTCATCTG-TTACAAAACAAAGTCT-ATCACAGCTTGATAATGGCTG---AT-------AG----TGT-CTGT-AGT-AAAGTTCTA-CAAtcatcaatagagcaccctgtgtattgtgcattgtgtcatatgttataaata
gi|13 : ttacctcctgtctcagtttctactctagaatatTAA--TCAATA--TCATAGAAAAC---------------AAA--------------C-ACCATAATAGAAAACACTCT-AC--AGGAGCTTATGGTAGGCATAT------TA-TGTAC
gi|14 : -CAACTTGTGGTAT-TT------TTTGTCATGTTTGCTAG--TCAATG--TCATAGAAAAC---------------AAA--------------T-GCC---------------AT-Atgtttctggtatccttgttat
gi|15 : ---------------AAA--------------C-ACC---------------CT-ACATA--AGATTGTGAGGGGTGTAT------CA-TGTATCaataatgaaaataaaacattctgcatatc
gi|16 : aAAG---------------AAA--------------CCACC---------------CT-AA--ACTAGCTTGTGATGGGTGTAT------TATTGTACgtttttgttaaacttgttggaat
gi|17 : -AAAGTTCGA-CAACTTGGGACAT-TT------TT-----TGTC-----------ATG--TCATAGAAAAC---------------AAA--------------tgtttctgtact
gi|18 : atgcttc-TT------TT---CATGTTTGCTAA--TCAATGTTTCATACAAAAC---------------GAA--------------
gi|19 : cttttggtactgcACAATTTGATGATTGTTG---AT-------AC----TAC-CTTA-AGA-AAAGCCCTG-CAAt
gi|2 : tggtGAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACA---TTAGAAAATTCAAACTCTGTGAGATATTTACATCATCATTATTGATAGGTTAATGTATG---ATTAAGA--TATAAAAAGTAAAAAAGACAAGGTTATACATTG-C--TAACCTTCCTTTTTTCCTGTG-TTACAAAACAA
gi|20 : atgtcttgttgaatgagagagctaATAAAAGAGAGTAT-GCCAGAGCTTGATGATAACTG---AT-------AC----TAC-CTTA-
gi|3 : TAAG----CTAC--CT------------G--------ATGTCAATGAAAA--TTTGAATTAT--------C-ATGTCA-ATATTG-TGATGGCCTTCACTTATTCATACA-TTGCAAAATTAGAAAT-GTCACATCTTGATGACTGCTG---AT-------GTAATGTAT-TCTA-CGTTAAAGTTTTA-CAACTTGTGACAT-TT------TT-GCTACATTTGCAAA--TCGATG--TCATAGAAAGC---------------AAACACCCTGAAAAAACC-ACC---------------CT-AC--ACTAGCTTGTAATGGATGTATCTCATGTA-TGTAC
gi|4 : ac-C--TGACCTTCATTTATTCATGTG-TTACAA------GTAT-GTCACAGTCTGATGATGGTTG---ATCAATGCTACATG-TAC-CTTA-CAT-AAAATTCTA-TAACTCCTGGCATTTT------TT-GCCATGTTTGCAAAATTCAATG--TTATAGAAAAG---------------AAA--------------C-ACat
gi|5 : TCTATTCATATA-ATGCAAAAGAAAATAT---CACAAC--GATGATGGCTG---AT-------AT----TAC-TGTGCAGT-AAAGTTCTA-CCAGTCAACATAT-TT------AT-ACTGTGTTTGCTAA--TCAATG--CCATAGAAAAC---------------AAA--------------T--TC---------------CT-TC--A--AGCATGTGACAGATATAT------TA-TGTACCtactttagtaaaaatgttctacatagctt
gi|6 : tTG-TTACAGAACAAAGTAT-TTCACAGCTTGGTGAATGCTGCATGT-------ACAATGTAC----A-AGT-AGTGTTGCATTAACTC-TGTCGT-TT------CA-ACCATGTTTGCTAA--TCAGTG--TCACA-ATAAT---------------TAA--------------C-GTC---------------TT-AC--A--att
gi|7 : TTA-TAT-AGAGGTCTA-TA------GGCCT-AT------AT-GCCATATTTGTTAA--TCGATG--TCATAGAAAAC---------------AAA--------------C-ATC---------------TTAAC--A--Attattcctggtgtttta
gi|8 : taaattgcaatgtaaatgtataatgattttttatagttgtaagaacttgtaAAG----T-AC--CCTGA------ACAG--------ATG----TGAAAAGTTTTAAAAAGT--------C-AGGTAATAT-TTGCC--CGACTTT--TTTATGTGTATGTTTGC-AAAC-AAGTATCCTCATAA-TTGGTGATGGCTG---TT-------GC----TATACTCA-ATT--AAGTTCaaacaccctacatttat
gi|9 : TG---AT-------AC----TAC-CCGA-CAT-ACAATTCTA-CAATTTATGGCATGTTTGCCAATT-GCCATGATTGTTAA--TAAATG--TCATTTAAAAC---------------AAA--------------
blockSeqs : T G A T A A C T TAATACT T TA C . T CTCT ATATTTACATCATCATTATTGATAGGTTAATGTATGA GT A AAAAAAGA A T T A TGA C C T CA CC CAT CAATGCTACATG A CA T T TG G T TGCCAA TG AT TT TAAAGTCCATTATAA CACCCTGAAAAAAC C ATAATAGAAAACACTCTACAGG T T CTCATG T
blockSeqs : TACCCTGAACAGATG . T . . C T A CC A G . CA A . GTAATG . A . . TG G G . G . . . . . CTACATA T C . .
blockSeqs : CTACCTGATGTCAA . A . . A . . C A A . GA G . ACAATG . A . . TG A . . G . . . . . CTACATA G T . .
blockSeqs : C . G . TT G . AG . C . . TG A . . G . . . . . CTAAACT T T . .
blockSeqs : A . GA G . AC . C . . TG G . . G . . . . . CTACACT T T . .
blockSeqs : A . CA T . AC . A . . CC A . . A . . . . . TTAACA C T . .
blockSeqs : . C . . AT . T . . CA T . . A . . . . . CTTCA
blockSeqs : . . GC . A . . TA G . . G . . . . . TTACA
blockSeqs : . AC . C . . C G . . G . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : CTACACA******************
originalCons : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-ACC---------------CT-AC--A--AGCTTGTGACGGGCGTAT------TA-TGTACC
finalCons : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-ACCCTACACA------------------AGCTTGTGACGGGCGTAT------TA-TGTACC
Alignments
lowQualScore : 1 333333 3333333 11 222 2222 6666666666666666666666666666666666666666 11 33333333 1 1111 2222222222222 111111111111111 33333333333333333333333333333333 111111
lowQualScore : 1 5 1 1 1 000000 1 1 3333333 1 88 1 111 1 2222 4444444444444444444444444444444444444444 33 1 66666666 0 1 3 3 2222 3 0 1 5 22 99 0 0 777 6666666666666 4 44 3 3 55 1 6 999999 44 44 44 0 666666666666666 00000000000000000000000000000000 2 3 2 1 666666 5
lowQualScore : . . . . . ...... . . ....... . .. . ... . .... ........................................ .. . ........ . . . . .... . . . . .. .. . . ... ............. . .. . . .. . . ...... .. .. .. . ............... ................................ . . . . ...... .
lowQualScore : 0 0 0 0 0 000000 0 0 5555555 0 55 0 555 0 0000 0000000000000000000000000000000000000000 88 2 22222222 0 0 2 2 2222 8 3 0 0 11 55 9 1 000 7777777777777 0 44 3 1 33 2 7 666666 33 22 22 8 777777777777777 55555555555555555555555555555555 5 7 7 4 444444 7
consensus : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-A---------------CCCTACACAAGCTTGTGACGGGCGTAT------TA-TGTACC
Reference ( family-1769 ) : GAGGTTNAAGGGCGTATGAGAACCCGNGAAATNCATNATGAAAGGAAAGTACTGTGTTNCAGTCATACGATATCGAGCTGNTGTAATACTGGTAGATTTTGCNTTAAAGCTCTTGCAAAAGCACATTTTATTNTTACATTTTTAGAAAATNCAAANTCTGTAAG----TTAC--CCTNA------ATAG--------ATG---ATGAAAA--TTTAAAAAGT--------C-AGGTNATATATTG-C--TGACCTTCNTTTATTCATNTG-TTACAAAACAAAGTAT-GTCACAGCTTGATGATGGCTG---AT-------AC----TAC-CTTA-AGT-AAAGTTCTA-CAACTCGTGGCAT-TT------TT-GCCATGTTTGCTAA--TCAATG--TCATAGAAAAC---------------AAA--------------C-A---------------CCCTACACAAGCTTGTGACGGGCGTAT------TA-TGTACC
gi|1 : GAGGTTAAAGAGC-TATGAGAACCTACGAAATATATTATAAAAGGAAAGTACTGTATTACAGTCATATAATATCAAGCTGATG----A--GATAGATTTTGCAT--AAACTCTTGCAAAAACATATTTTATTGTTACATTTTTAAAAAATGCAAAA---ATAAG----TTAC--CCTAA------ATAG--------AT----ATGAAAA--TTTAAAAGAT--------C-AGGTAATATATTG-C--TGATCAACCTTTATTCTTTTG-CTATAAAACAAAGTAT-GCCACAATTTGATTATGGCTG---AT-------AC----TAC-TTTA-AGT-AAAGTTCTG-CAACGCCCGGCAT-TT------TT-GCCATGTTTGCTAA--TTAATG--TTAT--AAAAC---------------AAT--------------C-A---------------TCTTACA-A---TTCTAACGGGCGTAT------TA-CTTACC
gi|10 : TTCTA-CAATTTGTG-CAT-TT------TT-GCTA-----ATTAA--T--ATA--TCATAGAAAACTAAAGTCCATTATAAAAA--------------C-A---------------CCCTACATAAACTGGTGATGGGTGTAT------TA-TGTg
gi|11 : -AAAGTCCTC-CAACTTGTGGCAT-TT------TT-GCTGTATTTGCTAA--TCAGTG--TCTTAAAAAAT---------------AAA--------------C-tctttttctggtacttc
gi|12 : TTTATTCATCTG-TTACAAAACAAAGTCT-ATCACAGCTTGATAATGGCTG---AT-------AG----TGT-CTGT-AGT-AAAGTTCTA-CAAtcatcaatagagcaccctgtgtattgtgcattgtgtcatatgttataaata
gi|13 : ttacctcctgtctcagtttctactctagaatatTAA--TCAATA--TCATAGAAAAC---------------AAA--------------C-ACCATAATAGAAAACACTCTACAGGAGCTTATGGTAGGCATAT------TA-TGTAC
gi|14 : -CAACTTGTGGTAT-TT------TTTGTCATGTTTGCTAG--TCAATG--TCATAGAAAAC---------------AAA--------------T-G---------------CCATAAATAAtgtttctggtatccttgttat
gi|15 : ---------------AAA--------------C-A---------------CCCTACATAAGATTGTGAGGGGTGTAT------CA-TGTATCtgaaaataaaacattctgcatatc
gi|16 : aAAG---------------AAA--------------CCA---------------CCCTAAACTAGCTTGTGATGGGTGTAT------TATTGTACgtttttgttaaacttgttggaat
gi|17 : -AAAGTTCGA-CAACTTGGGACAT-TT------TT-----TGTC-----------ATG--TCATAGAAAAC---------------AAA--------------tgtttctgtact
gi|18 : atgcttc-TT------TT---CATGTTTGCTAA--TCAATGTTTCATACAAAAC---------------GAA--------------
gi|19 : cttttggtactgcACAATTTGATGATTGTTG---AT-------AC----TAC-CTTA-AGA-AAAGCCCTG-CAAt
gi|2 : tggtGAGGTTTAAGGACGTATGAAAACCCGAGAAATTCATAATGAAAGGAAAA-A----GTTCCAGTCATACGATATTGAGCTGTTGTAATACTGGTAGATTTTGCTTTAAAGCTCTTGCAAAAGTACATTTTATTCTTACA---TTAGAAAATTCAAACTCTGTGAGATATTTACATCATCATTATTGATAGGTTAATGTATG---ATTAAGA--TATAAAAAGTAAAAAAGACAAGGTTATACATTG-C--TAACCTTCCTTTTTTCCTGTG-TTACAAAACAA
gi|20 : atgtcttgttgaatgagagagctaATAAAAGAGAGTAT-GCCAGAGCTTGATGATAACTG---AT-------AC----TAC-CTTA-
gi|3 : TAAG----CTAC--CT------------G--------ATGTCAATGAAAA--TTTGAATTAT--------C-ATGTCA-ATATTG-TGATGGCCTTCACTTATTCATACA-TTGCAAAATTAGAAAT-GTCACATCTTGATGACTGCTG---AT-------GTAATGTAT-TCTA-CGTTAAAGTTTTA-CAACTTGTGACAT-TT------TT-GCTACATTTGCAAA--TCGATG--TCATAGAAAGC---------------AAACACCCTGAAAAAACC-A---------------CCCTACACTAGCTTGTAATGGATGTATCTCATGTA-TGTAC
gi|4 : ac-C--TGACCTTCATTTATTCATGTG-TTACAA------GTAT-GTCACAGTCTGATGATGGTTG---ATCAATGCTACATG-TAC-CTTA-CAT-AAAATTCTA-TAACTCCTGGCATTTT------TT-GCCATGTTTGCAAAATTCAATG--TTATAGAAAAG---------------AAA--------------C-A---------------Cat
gi|5 : TCTATTCATATA-ATGCAAAAGAAAATAT---CACAAC--GATGATGGCTG---AT-------AT----TAC-TGTGCAGT-AAAGTTCTA-CCAGTCAACATAT-TT------AT-ACTGTGTTTGCTAA--TCAATG--CCATAGAAAAC---------------AAA--------------T-T---------------CCTT---CAAGCATGTGACAGATATAT------TA-TGTACCtactttagtaaaaatgttctacatagctt
gi|6 : tTG-TTACAGAACAAAGTAT-TTCACAGCTTGGTGAATGCTGCATGT-------ACAATGTAC----A-AGT-AGTGTTGCATTAACTC-TGTCGT-TT------CA-ACCATGTTTGCTAA--TCAGTG--TCACA-ATAAT---------------TAA--------------C-G---------------TCTTACAatt
gi|7 : TTA-TAT-AGAGGTCTA-TA------GGCCT-AT------AT-GCCATATTTGTTAA--TCGATG--TCATAGAAAAC---------------AAA--------------C-A---------------TCTTA-ACAAttattcctggtgtttta
gi|8 : taaattgcaatgtaaatgtataatgattttttatagttgtaagaacttgtaAAG----T-AC--CCTGA------ACAG--------ATG----TGAAAAGTTTTAAAAAGT--------C-AGGTAATAT-TTGCC--CGACTTT--TTTATGTGTATGTTTGC-AAAC-AAGTATCCTCATAA-TTGGTGATGGCTG---TT-------GC----TATACTCA-ATT--AAGTTCaaacaccctacatttat
gi|9 : TG---AT-------AC----TAC-CCGA-CAT-ACAATTCTA-CAATTTATGGCATGTTTGCCAATT-GCCATGATTGTTAA--TAAATG--TCATTTAAAAC---------------AAA--------------