lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 33333 33333333333 1 99999999999999999999999999999999999 111 44444444 1111 6666666666666 11 333333 1 444444444444444444444444444444444444444444444 111 11 222222 555555555555555555555 1 11 2 1
lowQualScore : 4 33333 5 4 1 11111111111 2 66666666666666666666666666666666666 5 5 000 6 11111111 5 5 2 9999 5555555555555 3 33 1 222222 4 1 666666666666666666666666666666666666666666666 777 11 1 555555 3 888888888888888888888 3 88 8 5
lowQualScore : . ..... . . . ........... . ................................... . . ... . ........ . . . .... ............. . .. . ...... . . ............................................. ... .. . ...... . ..................... . .. . .
lowQualScore : 0 33333 7 0 9 22222222222 7 22222222222222222222222222222222222 7 7 000 0 66666666 7 7 5 6666 4444444444444 8 88 4 555555 5 2 444444444444444444444444444444444444444444444 444 00 4 000000 2 333333333333333333333 3 33 5 0
consensus : TTAAAGGGAC-ATGGAC-ACGCTTTTG-AGCTAA-AA---ATGT-TCAAAATTTTAGAT---TGCC-A--TTTT---GGTG----TTT--AAAATG-CTTA-A---TCAAGTTATTT-TCTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTTTGGTTCGAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCTT----TA-ACGATGTA--AA-CAAGGCT-CGTAGC---------C-TTGTTT-A-TG--TTTACGTA--AAGATTGCTTCGTA---GAAGAATA-C--AATG-TT--AAAACAAAATGAGAT
Reference ( gi|2 ) : TTAAAGGGAC-ATGGACGACGTTTTTG-AACTAATAA---ATGTATCAAAATTTTGGAT---TGCCCG--TTCT---GGTG----TTTTAAAAATG-CTTA-A---TCGAGCTATTTTTCTAGT-GGT-CAGCAAACAT-TTGAAAGTCCAGTTTGGTTTGAGTTACAAG--TAAGA-A----TACAGCACTCACAAATCTT----CAAACGATGCA--AACCAAGGCT-CGCAGC---------C-TTGTTT-A-TG--TTTACGCA--AAGATTGCTTCGTA---GAAGAATA-T--AATG-TT--AAAACAATATGATAT
gi|5 : TTAAAGGGAC-ATGGAC-ACATTTT-G-AACTAA-AA---ATGT-TCAAA-TTTTAAAT---TGCCAA--TTTT---GATG----TTT--AAAATG-CTTA-A---TTAAGTTATTT--CTAGT-GTT-CAGCAAAAAT-TTGCAAGT-CAG-TTG--TTGCGTTACAAG--TAAGA-
gi|3 : TTAAAGGGAT-ATGGAC-ACGTTTT-G-AGCTAA----------------ATTTT------------------T---AATG----TTT--AAAACG-CTTA-A---CCAAG---------TAAT-GGG-TACAAAAAAT-TTGAATGTC-AGTT--GTT-GAGTTACTGG--TTAAG-A----TACAGCGCTCACAATTCTG----TA----ATGTA--AA-CGAGGCT-CGT-GCCTCTTTCTTC-TTCTTT-T-TG--TTTACATA--AAGATTGCTTCta
gi|4 : tTTAAAGAGAC-TTGGACAGCGTTTC---AAGCAAAAA---ATAGCTCATA-TTTTAGAT---TGCGCAATTTTT---GG-GAGGATTTTAAATATG-CTTATA---TTAAGTTA--TTTCTAGTGGGTGCAGCAAAACT-GTTAAAGTC----TTGA--TGATTCACAAactgtttttaaacaacaaaacgagat
gi|16 : TTAAAGGGAC-ATGGAC-ACG--TTTGAAACTAA-AA---ATGT-TCAAAATT
gi|13 : TTAAAGGGAC-ATGTAC-AC-CTTTTG-AGCTAAca
gi|18 : TTAAAGGGAC-ACG--------TTTTG-AACTA--AA---ATGT-TCAAAatttgatagttttaaaatgcttaa
gi|12 : tTTAAAGGGACTATGTACCAC-CTTTTG-AGCTAA-AATTTATGTTTTAAAATtt
gi|19 : tTAAAGGGAC-ATAGAC-AC-CTTTTG-AACTAG-AA---ATGTgctta
gi|7 : AAAGAGAC-ATGGCATACGTTTTTG-A-----TA-----TTTAT-----TTTTG--T---T--CTA--TT-----GGTC----TTT---AAATGGCTTA-A---TCAAGTTATTT---TAGT-AGT-CAGTAAAAA--TTGAAAGTt
gi|15 : AGGGAC-ATGGAC-ACG-CTTTG-AGCTAAAAA---ATGT-TCAAACTTTTAGAT---T
gi|14 : A---ATGT-TCAAA-TTTTAGAT---TGCC-----------GAT--------------TG-CTTA-A---TCAAGTTA--TTTCTAGT-GGT-CAcca
gi|1 : TGAATCTAAATTTTATATATTTGCAAT--TTCTTAAGG-G----TTGTAAAATTG-ATTA-AACATCAAGTAATTT--CTAGT-GGT-CA-CAATAATCTTGAAAATGTAGTT--GTTC-AGTTACAAGAATAAGATAACATTATAGC-CACATAGATCTTATCGCATATAGT-CATTAAACAAGGTT-CGTAGC---------CTTTGTTT-ATTG--TTTACAAAT-AAGAATGC-----AAACAAAGAATA-CCAAATT-TTAAAAAACAA-ATGA
gi|17 : taaagagactatggcatcaggttt---GATA----TTT--AAAATG-CTTA-A---TCAAGTTA--TGTCAAGT-GTT-CAGCAAA
gi|8 : TGAAAGTCCGCTATAG----AGTTACA-G--TTATT-A----TACAGCGCTCATAAATCTT---------G----------CAAGGCT-TG-AGC---------C-TAGTTT-A-TG--TT
gi|6 : AAGA------TACAGCGCTCACAAGTCTT----TG--TTATGT------------------GC---------T-TTGTTA-T-TG--TATAAATA--AAGATTGCTTCATA---GAA-AATACC--CATGTTT--AAAACAAAATGAGAT
gi|1 : AAACAAT--A--AACAAAGGCTACG-AAC---------C-TTGTTTAA-TGACTATATGCGATAAGAT--CTATGT-------GGCTA-T--AATG-TT--Agt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAGGGACATGGACATGTTTTCAGCTTTTATAGCTACATTTTTTAAAGTTTAAAATGCTTAACCAAG
Unaligned ( gi|10 ): TGAACGGGGCATGGACACCTTCTCAGCTAAATTTTATATGTTTAAATGCCTAACCAGG
Unaligned ( gi|11 ): GGGACATAGACACGTTTTGAGCAAACTTTTTAATGTTTAAATCCTTAACCAAGTTA
Alignments
lowQualScore : 2222 33333333333333333333333333333333333333333333333 1111111111111 22222 11 3333333 11 11111 8888888888888888888888 11 33333333333 1 5555555555555555555555555 11 1
lowQualScore : 5 2 5 2 5555 2 33333333333333333333333333333333333333333333333 5555555555555 4 55 4 4 4 777 00000 5 5 0 6 11 5555555 1 11 55555 8 3 2222222222222222222222 44 33333333333 99 33 0 3 4444444444444444444444444 33 0
lowQualScore : . . . . .... . ............................................... ............. . .. . . . ... ..... . . . . .. ....... . .. ..... . . ...................... .. ........... .. .. . . ......................... .. .
lowQualScore : 3 7 3 7 2222 7 77777777777777777777777777777777777777777777777 4444444444444 0 55 0 0 0 000 88888 0 0 7 7 88 8888888 7 00 00000 0 2 8888888888888888888888 22 22222222222 44 22 0 2 0000000000000000000000000 88 0
consensus : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-A--TTTT----GATG-----TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTTTGGTT-GAGTTACAAG--TAAGA----AT-ACAGCGCTCACAAATCTT--------T-A-T-ATGTAAA-CAAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-C--AATGT--TTAA--AACA-AAATGAGAT
Reference ( family-16511 ) : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-A--TTTT----GGTG-----TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTTTGGTTCGAGTTACAAG--TAAGA----AT-ACAGCGCTCACAAATCTT--------T-AACGATGTAAA-CAAGGCTCGTAGC---------C-TTGTTTA-TGTTTACGTA-AAGATTGCTTCGTA---GAAGAATA-C--AATG---TTAA--AACA-AAATGAGAT
gi|1 : TAAAGAGACTATGG--C-A-TCAGGTTTTG-AA----------------------TCTA-AATTTTATATATTTGC-A-A--TTTCTTAAGG-G-----TTGT--AAA-ATTGATTA-AACATCAAGTAATTT--CTAGT-GGT-CA-CAATAATCTTGAAAATGTAGTT--GTTC-AGTTACAAGAATAAGATAACATTATAGC-CACATAGATCTTATCGCATAT-AGTCAT-TAAA-CAAGGTTCGTAGC---------CTTTGTTTATTGTTTACAAATAAGAATGC-----AAACAAAGAATA-CCAAATT---TTAA--AAAACAAATGA
gi|10 : AACGGGGC-ATGG-AC-A-C---CTTCTC-AGCT-AA-ATTTTAT--AT-G-T-TTAA-A
gi|11 : tgGGGAC-ATAG-AC-A-C--G-TTTTG-AGC------------------------A-AACT------------------TTTT----AATG-----TT-T---AA-AT-CCTTA-A---CCAAGTTAtgcctaaccagg
gi|12 : TTAAAGGGACTATGT-ACCA-C---CTTTTG-AGCT-AA-A----ATTTAT-GTT-TTAA-AAT
gi|13 : tTTAAAGGGAC-ATGT-AC-A-C---CTTTTG-AGCT-AA-A-------------T-TTGATAGTTTTAAAA---TGC-gctta
gi|14 : ----A---AT-G-T-TCAA-A-TTTTAGAT---TGC-C------------GAT-----------------T-GCTTA-A---TCAAGTTA-TTT-CTAGT-GGT-CAttaa
gi|15 : AGGGAC-ATGG-AC-A-C--GC-TTTG-AGCTAAA-A----A---AT-G-T-TCAA-ACTTTTAGAT---T-C-C-A--
gi|16 : TTAAAGGGAC-ATGG-AC-A-C--G--TTTGAAACT-AA-A----A---AT-G-T-TCAA-AATT
gi|17 : ----GATA-----TT-T--AAA-AT-GCTTA-A---TCAAGTTA-TGT-CAAGT-GTT-CAGCAAAca
gi|18 : TTAAAGGGAC-ACG------------TTTTG-AACT-AA-A----A----T-G-T-TCAA-A
gi|19 : tTAAAGGGAC-ATAG-AC-A-C---CTTTTG-AACT-AG-A----A---AT-G-T-Ttt
gi|2 : TTAAAGGGAC-ATGG-ACGA-C--GTTTTTG-AACT-AATA----A---AT-G-TATCAA-AATTTTGGAT---TGC-CCG--TTCT----GGTG-----TT-TTAAAA-AT-GCTTA-A---TCGAGCTATTTTTCTAGT-GGT-CAGCAAACAT-TTGAAAGTCCAGTTTGGTTTGAGTTACAAG--TAAGA----AT-ACAGCACTCACAAATCTT--------CAAACGATGCAAACCAAGGCTCGCAGC---------C-TTGTTTA-TGTTTACGCA-AAGATTGCTTCGTA---GAAGAATA-T--AATG---TTAA--AACA-ATATGATAT
gi|3 : TTAAAGGGAT-ATGG-AC-A-C--G-TTTTG-AGCT-AA-A---------------------------------T--------TTTT----AATG-----TT-T--AAA-AC-GCTTA-A---CCAAGT---------AAT-GGG-TACAAAAAAT-TTGAATGTC-AGTT--GTT-GAGTTACTGG--TTAAG----AT-ACAGCGCTCACAATTCTG--------T-A---ATGTAAA-CGAGGCTCGT-GCCTCTTTCTTC-TTCTTTT-TGTTTACATA-AAGATTGCTTC-------------A-C----TGTTTTTAAACAACA-AAACGAGAT
gi|4 : tTTAAAGAGAC-TTGG-AC-AGC--G-TTTCA-AGCA-AA-A----A---ATAG-C-TCAT-A-TTTTAGAT---TGCGC-AATTTTT----GG-GAGGATTT-T--AAATAT-GCTTATA---TTAAGTTA-TTT-CTAGTGGGTGCAGCAAAACT-GTTAAAGTC----TTGAT--GATTCACAA
gi|5 : TTAAAGGGAC-ATGG-AC-A-C--A-TTTTG-AACT-AA-A----A---AT-G-T-TC-A-AATTTTAAAT---TGC-CAA--TTTT----GATG-----TT-T--AAA-AT-GCTTA-A---TTAAGTTA-TTT-CTAGT-GTT-CAGCAAAAAT-TTGCAAGT-CAGTT--GTT-GCGTTACAAG--TAAGA----
gi|6 : AAGA-----T-ACAGCGCTCACAAGTCTT--------T-G-TTATGT---------------GC---------T-TTGTTAT-TGTATAAATA-AAGATTGCTTCATA---GAA-AATACC--CATGT--TTAA--AACA-AAATGAGATta
gi|7 : AAAGAGAC-ATGGCAT-A-C--GTTTTTG------------------AT-A-T-TT----ATTT----T---TGT-T-C--TATT----GGTC-----TT-T--AAA-TG-GCTTA-A---TCAAGTTATTT---TAGT-AGT-CAGTAAAAA--TTGAAAGTgt
gi|8 : TGAAAGTCCGCTATAG----AGTTACA-G--TTATT----AT-ACAGCGCTCATAAATCTT--------------------G-CAAGGCTTG-AGC---------C-TAGTTTA-TGTT
gi|9 : AAGGGAC-ATGG-AC-A-T--G-TTTTC-AGCT------------------T-TTAT-AGCT--ACAT---T--------TTTT----AAAG-----TT-T--AAA-AT-GCTTA-A---CCAAG
Alignments
lowQualScore : 2222 333333333333333333333333333333333333333333333 111111 22222 111 33 11 11111 7777777777777777777777777 11 33333333333 1 3333333333333333333 11 11 1
lowQualScore : 5 2 5 2 5555 2 222222222222222222222222222222222222222222222 66 111111 88 4 55 4 4 4 777 00000 5 5 0 6 555 00 6 1 11 55555 8 3 1111111111111111111111111 44 33333333333 99 1 0 3 6666666666666666666 22 33 0
lowQualScore : . . . . .... . ............................................. .. ...... .. . .. . . . ... ..... . . . . ... .. . . .. ..... . . ......................... .. ........... .. . . . ................... .. .. .
lowQualScore : 3 7 3 7 2222 7 222222222222222222222222222222222222222222222 11 555555 11 0 55 0 0 0 000 88888 0 0 7 7 000 33 7 7 00 00000 0 2 6666666666666666666666666 22 22222222222 44 2 0 2 5555555555555555555 00 88 0
consensus : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTT--GTT-GAGTTACAAG--TAAGA----AT-ACAGCGCTCACAAATCTT----CA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-C--NATGTTTAA--AACA-AAATGAGAT
Reference ( family-16511 ) : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTTTGGTT-GAGTTACAAG--TAAGA----AT-ACAGCGCTCACAAATCTT----TA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-C--AATGTTTAA--AACA-AAATGAGAT
gi|1 : TAAAGAGACTATGG--C-A-TCAGGTTTTG-AA----------------------TCTA-AATTTTATATATTTGC-A-ATTTCTT------AAGGGTTGT--AAA-ATTGATTA-AACATCAAGTAATTT--CTAGT-GGT-CA-CAATAATCTTGAAAATGTAGTT--GTT-CAGTTACAAGAATAAGATAACATTATAGC-CACATAGATCTTATCGCA---T-ATAGTCATTAAAC-AAGGTTCGTAGC---------CTTTGTTTATTGTTTACAAATAAGAATGC-----AAACAAAGAATA-CCAAAT-TTTAA--AAAACAAATGA
gi|10 : AACGGGGC-ATGG-AC-A-C---CTTCTC-AGCT-AA-ATTTTAT--AT-G-T-TTAA-A
gi|11 : tgGGGAC-ATAG-AC-A-C--G-TTTTG-AGC------------------------A-AACT----------------TTT--T------AATG-TT-T---AA-AT-CCTTA-A---CCAAGTTAtgcctaaccagg
gi|12 : TTAAAGGGACTATGT-ACCA-C---CTTTTG-AGCT-AA-A----ATTTAT-GTT-TTAA-AAT
gi|13 : tTTAAAGGGAC-ATGT-AC-A-C---CTTTTG-AGCT-AA-A-------------T-TTGATAGTTTTAAAA---TGC-gctta
gi|14 : ----A---AT-G-T-TCAA-A-TTTTAGAT---TGC-C--------------GAT-------------T-GCTTA-A---TCAAGTTA-TTT-CTAGT-GGT-CAttaa
gi|15 : AGGGAC-ATGG-AC-A-C--GC-TTTG-AGCTAAA-A----A---AT-G-T-TCAA-ACTTTTAGAT---T-C-C-A
gi|16 : TTAAAGGGAC-ATGG-AC-A-C--G--TTTGAAACT-AA-A----A---AT-G-T-TCAA-AATT
gi|17 : ------GATA-TT-T--AAA-AT-GCTTA-A---TCAAGTTA-TGT-CAAGT-GTT-CAGCAAAca
gi|18 : TTAAAGGGAC-ACG------------TTTTG-AACT-AA-A----A----T-G-T-TCAA-A
gi|19 : tTAAAGGGAC-ATAG-AC-A-C---CTTTTG-AACT-AG-A----A---AT-G-T-Ttt
gi|2 : TTAAAGGGAC-ATGG-ACGA-C--GTTTTTG-AACT-AATA----A---AT-G-TATCAA-AATTTTGGAT---TGC-CCGTTC--T------GGTG-TT-TTAAAA-AT-GCTTA-A---TCGAGCTATTTTTCTAGT-GGT-CAGCAAACAT-TTGAAAGTCCAGTTTGGTTTGAGTTACAAG--TAAGA----AT-ACAGCACTCACAAATCTT----CAAACG-ATG-----CAAACCAAGGCTCGCAGC---------C-TTGTTTA-TGTTTACGCA-AAGATTGCTTCGTA---GAAGAATA-T--AATG-TTAA--AACA-ATATGATAT
gi|3 : TTAAAGGGAT-ATGG-AC-A-C--G-TTTTG-AGCT-AA-A---------------------------------T------TTT--T------AATG-TT-T--AAA-AC-GCTTA-A---CCAAGT---------AAT-GGG-TACAAAAAAT-TTGAATGTC-AGTT--GTT-GAGTTACTGG--TTAAG----AT-ACAGCGCTCACAATTCTG----TA-----ATG-----TAAAC-GAGGCTCGT-GCCTCTTTCTTC-TTCTTTT-TGTTTACATA-AAGATTGCTTC-------------A-C--TGTTTTTAAACAACA-AAACGAGAT
gi|4 : tTTAAAGAGAC-TTGG-AC-AGC--G-TTTCA-AGCA-AA-A----A---ATAG-C-TCAT-A-TTTTAGAT---TGCGCAATTT--TTGGGAGGAT--TT-T--AAATAT-GCTTATA---TTAAGTTA-TTT-CTAGTGGGTGCAGCAAAACT-GTTAAAGTC----TTGA-T-GATTCACAA
gi|5 : TTAAAGGGAC-ATGG-AC-A-C--A-TTTTG-AACT-AA-A----A---AT-G-T-TC-A-AATTTTAAAT---TGC-CAATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TTAAGTTA-TTT-CTAGT-GTT-CAGCAAAAAT-TTGCAAGT-CAGTT--GTT-GCGTTACAAG--TAAGA----
gi|6 : AAGA-----T-ACAGCGCTCACAAGTCTT----TG---TTATG-----T---------------GC---------T-TTGTTAT-TGTATAAATA-AAGATTGCTTCATA---GAA-AATACC--CATGTTTAA--AACA-AAATGAGATta
gi|7 : AAAGAGAC-ATGGCAT-A-C--GTTTTTG------------------AT-A-T-TT----ATTT----T---TGT-T-CTAT--T------GGTC-TT-T--AAA-TG-GCTTA-A---TCAAGTTATTT---TAGT-AGT-CAGTAAAAA--TTGAAAGTgt
gi|8 : TGAAAGTCC-GCT--ATA-GAGTTACA-G--TTATT----AT-ACAGCGCTCATAAATCTT----------------------GC-AAGGCTTG-AGC---------C-TAGTTTA-TGTT
gi|9 : AAGGGAC-ATGG-AC-A-T--G-TTTTC-AGCT------------------T-TTAT-AGCT--ACAT---T------TTT--T------AAAG-TT-T--AAA-AT-GCTTA-A---CCAAG
Alignments
lowQualScore : 2222 333333333333333333333333333333333333333333333 111111 22222 111 11 222222 7777777777777777777777777 11 33333333333 1 3333333333 1 111 11
lowQualScore : 5 2 5 2 5555 2 222222222222222222222222222222222222222222222 66 111111 88 4 55 4 4 4 777 00000 5 5 0 6 555 99 6 1 11 444444 3 1111111111111111111111111 44 33333333333 99 1 0 3 3333333333 0 1 33 777 33 3
lowQualScore : . . . . .... . ............................................. .. ...... .. . .. . . . ... ..... . . . . ... .. . . .. ...... . ......................... .. ........... .. . . . .......... . . .. ... .. .
lowQualScore : 3 7 3 7 2222 7 222222222222222222222222222222222222222222222 11 555555 11 0 55 0 0 0 000 88888 0 0 7 7 000 22 7 7 00 555555 2 2222222222222222222222222 22 22222222222 44 2 0 2 2222222222 0 0 55 555 88 2
consensus : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCTT----CA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
Reference ( family-16511 ) : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCTT----CA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CNATGTTT---AA--AACAAAATGAGAT
gi|1 : TAAAGAGACTATGG--C-A-TCAGGTTTTG-AA----------------------TCTA-AATTTTATATATTTGC-A-ATTTCTT------AAGGGTTGT--AAA-ATTGATTA-AACATCAAGTAATTT--CTAGT-GGT-CA-CAATAATCTTGAAAATGTAGTT--GTT-CAGTTACAAGAATAAGATAACATTATAGC-CACATAGATCTTATCGCA---T-ATAGTCATTAAAC-AAGGTTCGTAGC---------CTTTGTTTATTGTTTACAAATAAGAATGC-----AAACAAAGAATA-CCAAATTTTAAAA--AAC-AAATGA
gi|10 : AACGGGGC-ATGG-AC-A-C---CTTCTC-AGCT-AA-ATTTTAT--AT-G-T-TTAA-A
gi|11 : tgGGGAC-ATAG-AC-A-C--G-TTTTG-AGC------------------------A-AACT----------------TTT--T------AATG-TT-T---AA-AT-CCTTA-A---CCAAGTTAtgcctaaccagg
gi|12 : TTAAAGGGACTATGT-ACCA-C---CTTTTG-AGCT-AA-A----ATTTAT-GTT-TTAA-AAT
gi|13 : tTTAAAGGGAC-ATGT-AC-A-C---CTTTTG-AGCT-AA-A-------------T-TTGATAGTTTTAAAA---TGC-gctta
gi|14 : ----A---AT-G-T-TCAA-A-TTTTAGAT---TGC-C--------------GAT-------------T-GCTTA-A---TCAAGTTA-TTT-CTAGT-GGT-CAttaa
gi|15 : AGGGAC-ATGG-AC-A-C--GC-TTTG-AGCTAAA-A----A---AT-G-T-TCAA-ACTTTTAGAT---T-C-C-A
gi|16 : TTAAAGGGAC-ATGG-AC-A-C--G--TTTGAAACT-AA-A----A---AT-G-T-TCAA-AATT
gi|17 : ------GATA-TT-T--AAA-AT-GCTTA-A---TCAAGTTA-TGT-CAAGT-GTT-CAGCAAAca
gi|18 : TTAAAGGGAC-ACG------------TTTTG-AACT-AA-A----A----T-G-T-TCAA-A
gi|19 : tTAAAGGGAC-ATAG-AC-A-C---CTTTTG-AACT-AG-A----A---AT-G-T-Ttt
gi|2 : TTAAAGGGAC-ATGG-ACGA-C--GTTTTTG-AACT-AATA----A---AT-G-TATCAA-AATTTTGGAT---TGC-CCGTTC--T------GGTG-TT-TTAAAA-AT-GCTTA-A---TCGAGCTATTTTTCTAGT-GGT-CAGCAAACAT-TTGAAAGTCCAGTTTGGTTTGAGTTACAAG--TAAGA-A----TACAGCACTCACAAATCTT----CAAACG-ATG-----CAAACCAAGGCTCGCAGC---------C-TTGTTTA-TGTTTACGCA-AAGATTGCTTCGTA---GAAGAATA-TAATG-TT---AA--AACAATATGATAT
gi|3 : TTAAAGGGAT-ATGG-AC-A-C--G-TTTTG-AGCT-AA-A---------------------------------T------TTT--T------AATG-TT-T--AAA-AC-GCTTA-A---CCAAGT---------AAT-GGG-TACAAAAAAT-TTGAATGTC-AGTT--GTT-GAGTTACTGG--TTAAG-A----TACAGCGCTCACAATTCTG----TA-----ATG-----TAAAC-GAGGCTCGT-GCCTCTTTCTTC-TTCTTTT-TGTTTACATA-AAGATTGCTTC-------------A-CTGTTTTT---AAACAACAAAACGAGAT
gi|4 : tTTAAAGAGAC-TTGG-AC-AGC--G-TTTCA-AGCA-AA-A----A---ATAG-C-TCAT-A-TTTTAGAT---TGCGCAATTT--TTGGGAGGAT--TT-T--AAATAT-GCTTATA---TTAAGTTA-TTT-CTAGTGGGTGCAGCAAAACT-GTTAAAGTC---TT--GAT-GATTCACAA
gi|5 : TTAAAGGGAC-ATGG-AC-A-C--A-TTTTG-AACT-AA-A----A---AT-G-T-TC-A-AATTTTAAAT---TGC-CAATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TTAAGTTA-TTT-CTAGT-GTT-CAGCAAAAAT-TTGCAAGT-CAGTT--GTT-GCGTTACAAG--TAAGA-
gi|6 : AAGA------TACAGCGCTCACAAGTCTT----TG---TTATG-----T---------------GC---------T-TTGTTAT-TGTATAAATA-AAGATTGCTTCATA---GAA-AATACCCATGTTT---AA--AACAAAATGAGATta
gi|7 : AAAGAGAC-ATGGCAT-A-C--GTTTTTG------------------AT-A-T-TT----ATTT----T---TGT-T-CTAT--T------GGTC-TT-T--AAA-TG-GCTTA-A---TCAAGTTATTT---TAGT-AGT-CAGTAAAAA--TTGAAAGTgt
gi|8 : TGAAAGTCC-GCT--ATA-GAGTTACA-G--TTATT-A----TACAGCGCTCATAAATCTT----------------------GC-AAGGCTTG-AGC---------C-TAGTTTA-TGTT
gi|9 : AAGGGAC-ATGG-AC-A-T--G-TTTTC-AGCT------------------T-TTAT-AGCT--ACAT---T------TTT--T------AAAG-TT-T--AAA-AT-GCTTA-A---CCAAG
Alignments
lowQualScore : 2222 333333333333333333333333333333333333333333333 111111 22222 111 11 222222 7777777777777777777777777 11 33333333333 1 3333333333 1 111 11
lowQualScore : 5 2 5 2 5555 2 222222222222222222222222222222222222222222222 66 111111 88 4 55 4 4 4 777 00000 5 5 0 6 555 99 6 1 11 444444 3 1111111111111111111111111 44 33333333333 99 1 0 3 3333333333 0 22 33 777 33 3
lowQualScore : . . . . .... . ............................................. .. ...... .. . .. . . . ... ..... . . . . ... .. . . .. ...... . ......................... .. ........... .. . . . .......... . .. .. ... .. .
lowQualScore : 3 7 3 7 2222 7 222222222222222222222222222222222222222222222 11 555555 11 0 55 0 0 0 000 88888 0 0 7 7 000 22 7 7 00 555555 2 2222222222222222222222222 22 22222222222 44 2 0 2 2222222222 0 22 55 555 88 2
consensus : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCTT----CA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
Reference ( family-16511 ) : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCTT----CA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
gi|1 : TAAAGAGACTATGG--C-A-TCAGGTTTTG-AA----------------------TCTA-AATTTTATATATTTGC-A-ATTTCTT------AAGGGTTGT--AAA-ATTGATTA-AACATCAAGTAATTT--CTAGT-GGT-CA-CAATAATCTTGAAAATGTAGTT--GTT-CAGTTACAAGAATAAGATAACATTATAGC-CACATAGATCTTATCGCA---T-ATAGTCATTAAAC-AAGGTTCGTAGC---------CTTTGTTTATTGTTTACAAATAAGAATGC-----AAACAAAGAATA-CCAAATTTTAAAA--AAC-AAATGA
gi|10 : AACGGGGC-ATGG-AC-A-C---CTTCTC-AGCT-AA-ATTTTAT--AT-G-T-TTAA-A
gi|11 : tgGGGAC-ATAG-AC-A-C--G-TTTTG-AGC------------------------A-AACT----------------TTT--T------AATG-TT-T---AA-AT-CCTTA-A---CCAAGTTAtgcctaaccagg
gi|12 : TTAAAGGGACTATGT-ACCA-C---CTTTTG-AGCT-AA-A----ATTTAT-GTT-TTAA-AAT
gi|13 : tTTAAAGGGAC-ATGT-AC-A-C---CTTTTG-AGCT-AA-A-------------T-TTGATAGTTTTAAAA---TGC-gctta
gi|14 : ----A---AT-G-T-TCAA-A-TTTTAGAT---TGC-C--------------GAT-------------T-GCTTA-A---TCAAGTTA-TTT-CTAGT-GGT-CAttaa
gi|15 : AGGGAC-ATGG-AC-A-C--GC-TTTG-AGCTAAA-A----A---AT-G-T-TCAA-ACTTTTAGAT---T-C-C-A
gi|16 : TTAAAGGGAC-ATGG-AC-A-C--G--TTTGAAACT-AA-A----A---AT-G-T-TCAA-AATT
gi|17 : ------GATA-TT-T--AAA-AT-GCTTA-A---TCAAGTTA-TGT-CAAGT-GTT-CAGCAAAca
gi|18 : TTAAAGGGAC-ACG------------TTTTG-AACT-AA-A----A----T-G-T-TCAA-A
gi|19 : tTAAAGGGAC-ATAG-AC-A-C---CTTTTG-AACT-AG-A----A---AT-G-T-Ttt
gi|2 : TTAAAGGGAC-ATGG-ACGA-C--GTTTTTG-AACT-AATA----A---AT-G-TATCAA-AATTTTGGAT---TGC-CCGTTC--T------GGTG-TT-TTAAAA-AT-GCTTA-A---TCGAGCTATTTTTCTAGT-GGT-CAGCAAACAT-TTGAAAGTCCAGTTTGGTTTGAGTTACAAG--TAAGA-A----TACAGCACTCACAAATCTT----CAAACG-ATG-----CAAACCAAGGCTCGCAGC---------C-TTGTTTA-TGTTTACGCA-AAGATTGCTTCGTA---GAAGAATA-TAATG-TT---AA--AACAATATGATAT
gi|3 : TTAAAGGGAT-ATGG-AC-A-C--G-TTTTG-AGCT-AA-A---------------------------------T------TTT--T------AATG-TT-T--AAA-AC-GCTTA-A---CCAAGT---------AAT-GGG-TACAAAAAAT-TTGAATGTC-AGTT--GTT-GAGTTACTGG--TTAAG-A----TACAGCGCTCACAATTCTG----TA-----ATG-----TAAAC-GAGGCTCGT-GCCTCTTTCTTC-TTCTTTT-TGTTTACATA-AAGATTGCTTC-------------A-CTGTTTTT---AAACAACAAAACGAGAT
gi|4 : tTTAAAGAGAC-TTGG-AC-AGC--G-TTTCA-AGCA-AA-A----A---ATAG-C-TCAT-A-TTTTAGAT---TGCGCAATTT--TTGGGAGGAT--TT-T--AAATAT-GCTTATA---TTAAGTTA-TTT-CTAGTGGGTGCAGCAAAACT-GTTAAAGTC---TT--GAT-GATTCACAA
gi|5 : TTAAAGGGAC-ATGG-AC-A-C--A-TTTTG-AACT-AA-A----A---AT-G-T-TC-A-AATTTTAAAT---TGC-CAATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TTAAGTTA-TTT-CTAGT-GTT-CAGCAAAAAT-TTGCAAGT-CAGTT--GTT-GCGTTACAAG--TAAGA-
gi|6 : AAGA------TACAGCGCTCACAAGTCTT----TG---TTATG-----T---------------GC---------T-TTGTTAT-TGTATAAATA-AAGATTGCTTCATA---GAA-AATACCCATGTTT---AA--AACAAAATGAGATta
gi|7 : AAAGAGAC-ATGGCAT-A-C--GTTTTTG------------------AT-A-T-TT----ATTT----T---TGT-T-CTAT--T------GGTC-TT-T--AAA-TG-GCTTA-A---TCAAGTTATTT---TAGT-AGT-CAGTAAAAA--TTGAAAGTgt
gi|8 : TGAAAGTCC-GCT--ATA-GAGTTACA-G--TTATT-A----TACAGCGCTCATAAATCTT----------------------GC-AAGGCTTG-AGC---------C-TAGTTTA-TGTT
gi|9 : AAGGGAC-ATGG-AC-A-T--G-TTTTC-AGCT------------------T-TTAT-AGCT--ACAT---T------TTT--T------AAAG-TT-T--AAA-AT-GCTTA-A---CCAAG
blockSeqs : T C C G GC A AATAAATGTATCAAAATTTTGGATTGCCCG . TGGGAG G . TA T . T . TTTTT G G . CCA TG T A . A A CAAACGATGCAAACC CA CTCTTTCTTC A C . T GTAGAAG C AA TT . AC A
blockSeqs : . . G . GT . AAAAATAGCTCATATTTTAGATTGCGCAA . . A . . . . . . TTT . . . CA . . G . A G TAATGTAAAC T C T T . T ATAGAA . TG GT . . A
blockSeqs : . . . . GT . AAAAAATGTTCAAACTTTTAGATTCCA . . G . . . . . . TGT . . . CA . . A . A G TGTTATGT A T T T . T . . CA G . . A
blockSeqs : . . . . C . AAAAATGTTCAAATTTTAAATTGCCAA . . G . . . . . . TTT . . . CC . . A . . G GC . C A
blockSeqs : . . . . G . ATATTTATTTTTGTTC . . G . . . . . . TTT . . . C . . .
blockSeqs : . . . . C . TTTATAGCTACATT . . C . . . . . . TTT . .
blockSeqs : . . . . C . AAACT . . G . . . . . . . . .
blockSeqs : . . . . G . AAAT . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . .
blockSeqs : . . . . G .
blockSeqs : . . . . G .
blockSeqs : . . . . A .
blockSeqs : . . . . G .
blockSeqs : . . . . . .
blockSeqCons : G*** AAAAATGTTCAATTTTAGATTGCC********************* ** G* *** CA* ** A***** CGATGCGC***************** ** C********** N*
originalCons : TTAAAGGGAC-ATGG-AC-A-C--GCTTTTG-AGCT-AA-A----A---AT-G-T-TCAA-AATTTTAGAT---TGC-C-ATTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCCAGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCTT----CA---T-ATG-----TAAAC-AAGGCTCGTAGC---------C-TTGTTTA-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
finalCons : TTAAAGGGAC-ATGG-AC-A-CG---TTTTG-AGCTAAAAATGTTCAATTTTAGATTGCC---------------------TTT--T------GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGTCA-GTT--GTT-GAGTTACAAG--TAAGAA-----TACAGCGCTCACAAATCTTCGATGCGC-----------------AAGGCTCG--GCC----------TTGTTTN-TGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555555555555555555555 22222 11 222222 111111111111111111111111111111111111111111111111111 1 3333333333 1 111 11
lowQualScore : 5 5 2 5 2 2 2 2 0000000000000000000000000000000000000 99999 66 3 777 3 3 3 666 00000 5 5 0 6 5 99 99 6 1 11 444444 3 777777777777777777777777777777777777777777777777777 99 1 0 3 3333333333 0 22 33 777 33 3
lowQualScore : . . . . . . . . ..................................... ..... .. . ... . . . ... ..... . . . . . .. .. . . .. ...... . ................................................... .. . . . .......... . .. .. ... .. .
lowQualScore : 3 3 7 3 7 7 7 7 0000000000000000000000000000000000000 11111 55 6 111 6 6 6 444 88888 0 0 7 7 7 88 22 7 7 00 555555 2 000000000000000000000000000000000000000000000000000 00 2 0 2 2222222222 0 22 55 555 88 2
consensus : TTAAAGGGAC-ATGG-A-C-A-CGTTTT-GAG-CT-AA-AAAT-GT-TCA-A--TTTTAGAT---TGC----T--TTTT-----GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGT-C-AGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCT--TC----G-ATGTA--------A---CAAGGCTCGTAGC---------C-TTGTTT-TTGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
Reference ( family-16511 ) : TTAAAGGGAC-ATGG-A-C-A-CGTTTT-GAG-CT-AA-AAAT-GT-TCA-A--TTTTAGAT---TGC----C--TTTT-----GATG-TT-T--AAA-AT-GCTTA-A---TCAAGTTATTTT-CTAGT-GGT-CAGCAAAAAT-TTGAAAGT-C-AGTT--GTT-GAGTTACAAG--TAAGA-A----TACAGCGCTCACAAATCT--TC----G-ATGC---------G---CAAGGCTCG--GC---------C-TTGTTT-NTGTTTACATA-AAGATTGCTTCGTA---GAAGAATA-CCGTGTTT---AA--AACAAAATGAGAT
gi|1 : TAAAGAGACTATGGCATC-A-GGTTTT-GAATCT-AA-A--------------TTTTATATATTTGCAAT-T--TCTT-----AAGGGTTGT--AAA-ATTGATTA-AACATCAAGTAATTT--CTAGT-GGT-CA-CAATAATCTTGAAAATGT-AGTT--GTT-CAGTTACAAGAATAAGATAACATTATAGC-CACATAGATCTTATC----GCATATAGTCATTAAA---CAAGGTTCGTAGC---------CTTTGTTTATTGTTTACAAATAAGAATGC-----AAACAAAGAATA-CCAAATTTTAAAA--AAC-AAATGA
gi|10 : AACGGGGC-ATGG-A-C-A-CCTTCT-CAG-CT-A------------A-A--TTTT--AT-----------------------ATG-TT-T---AA-AT-GCCTA-A---CCAGG
gi|11 : tgGGGAC-ATAG-A-C-A-CGTTTT-GAG-C--AA-A---------------------------C----T--TTTT-----AATG-TT-T---AA-AT-CCTTA-A---CCAAGTTA
gi|12 : TTAAAGGGACTATGT-A-CCA-CCTTTT-GAG-CT-AA-AA----T-TTATG--TTTTAAAA---TGC----T--T
gi|13 : tTTAAAGGGAC-ATGT-A-C-A-CCTTTT-GAG-CT-AA-ATTT-GA-T-A-G--TTTTAAAA---TGC----T--Ta
gi|14 : AAT-GT-TCA-AA-TTTTAGAT---TGC----C-----------GAT-------------T-GCTTA-A---TCAAGTTA-TTT-CTAGT-GGT-CAaa
gi|15 : AGGGAC-ATGG-A-C-A-CGCTTT-GAG-CTAAA-AAAT-GT-TCA-AACTTTTAGAT---T
gi|16 : TTAAAGGGAC-ATGG-A-C-A-CGTTTG-AAA-CT-AA-AAAT-GT-TCA-A--cca
gi|17 : -----GATA-TT-T--AAA-AT-GCTTA-A---TCAAGTTA-TGT-CAAGT-GTT-CAGCAAAaattca
gi|18 : TTAAAGGGAC----------A-CGTTTT-GAA-CT--A-AAAT-GT-TCA-A--ATT
gi|19 : tTAAAGGGAC-ATAG-A-C-A-CCTTTT-GAA-CT-AG-AAAT-GT-T
gi|2 : TTAAAGGGAC-ATGG-A-CGA-CGTTTTTGAA-CT-AATAAAT-GTATCA-AAATTTTGGAT---TGC----CCGTTCT-----GGTG-TT-TTAAAA-AT-GCTTA-A---TCGAGCTATTTTTCTAGT-GGT-CAGCAAACAT-TTGAAAGT-CCAGTTTGGTTTGAGTTACAAG--TAAGA-A----TACAGCACTCACAAATCT--TCAAACG-ATGC---------AAACCAAGGCTCGCAGC---------C-TTGTTT-ATGTTTACGCA-AAGATTGCTTCGTA---GAAGAATA-TAATG-TT---AA--AACAATATGATAT
gi|3 : TTAAAGGGAT-ATGG-A-C-A-CGTTTT-GAG-CT-AA-A--------------------------------T--TTTT-----AATG-TT-T--AAA-AC-GCTTA-A---CCAAGT---------AAT-GGG-TACAAAAAAT-TTGAATGT-C-AGTT--GTT-GAGTTACTGG--TTAAG-A----TACAGCGCTCACAATTCT--GT----A-ATGTAA-------A---CGAGGCTCGT-GCCTCTTTCTTC-TTCTTT-TTGTTTACATA-AAGATTGCTTC-------------A-CTGTTTTT---AAACAACAAAACGAGAT
gi|4 : tTTAAAGAGAC-TTGG-A-C-AGCGTTTC-AAG-CA-AA-AAATAGC-TCATA--TTTTAGAT---TGCGCAAT--TTTTGGGAGGAT--TT-T--AAATAT-GCTTATA---TTAAGTTA-TTT-CTAGTGGGTGCAGCAAAACT-GTTAAAGT-C---TT--GAT-GATTCACAA
gi|5 : TTAAAGGGAC-ATGG-A-C-A-CATTTT-GAA-CT-AA-AAAT-GT-TCA-AA-TTTTAAAT---TGC----CAATTTT-----GATG-TT-T--AAA-AT-GCTTA-A---TTAAGTTATTT--CTAGT-GTT-CAGCAAAAAT-TTGCAAGT-C-AGTT--GTT-GCGTTACAAG--TAAGA-
gi|6 : AAGA------TACAGCGCTCACAAGTCT--TT----G-TTAT---------G---T----------GC---------T-TTGTTA-TTGTATAAATA-AAGATTGCTTCATA---GAA-AATACCCATGTTT---AA--AACAAAATGAGATta
gi|7 : AAAGAGAC-ATGGCA-T-A-CGTTTT------T-GA----T-AT-TTA-T--TTTTG--T---T------C--TATT-----GGTC-TT-T--AAA-TG-GCTTA-A---TCAAGTTATTT---TAGT-AGT-CAGTAAAAA--TTGAAAGT-gt
gi|8 : TGAAAGT-C-CGCT--ATA-GAGTTACA-G--TTATT-A----TACAGCGCTCATAAATCT--T--------------------G---CAAGGCTTGA-GC---------C-TAGTTT-ATGTT
gi|9 : AAGGGAC-ATGG-A-C-A-TGTTTT-CAG-CT----------T-TTA-T--AGCTACAT---T---------TTTT-----AAAG-TT-T--AAA-AT-GCTTA-A---CCAAG