lowQualScore : 111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555555 1 5555555555555555 11 222222 11 11111 2222 22 3 111111 444444444 1111 7777777777777777777777777777777777777777777777777 1 111111 11 333333333333333333333333333333333333333 111111 3333333 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 1 1111111 111111111111 111111111 22 11 1
lowQualScore : 6 3 5 444444 888 0 0 3333333333333333 33 0 4 333333 66 77 11111 3333 33 4 1 1 5 4 999 66 4 1 4 555555 2 4 444444444 3333 5 1111111111111111111111111111111111111111111111111 2 777777 22 55 4 66 8 000000000000000000000000000000000000000 4 1 1 333333 0000000 66 777 1 77 1 5 2 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 8888888 1 4 4 8888 1111111 444444444444 333333333 7 777 2 3 44 00 5
lowQualScore : . . . ...... ... . . ................ .. . . ...... .. .. ..... .... .. . . . . . ... .. . . . ...... . . ......... .... . ................................................. . ...... .. .. . .. . ....................................... . . . ...... ....... .. ... . .. . . . .................................................................................................... . ....... . . . .... ....... ............ ......... . ... . . .. .. .
lowQualScore : 0 0 0 111111 888 0 1 8888888888888888 88 1 4 000000 11 33 11111 6666 00 4 9 1 2 4 666 11 4 0 4 222222 4 4 555555555 5555 0 6666666666666666666666666666666666666666666666666 0 111111 88 55 4 11 9 000000000000000000000000000000000000000 4 8 1 000000 9999999 11 888 7 99 4 7 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 9999999 6 3 0 5555 8888888 999999999999 555555555 1 000 5 2 22 33 0
consensus : GTACGCCACCTTTTTGATATTTT-TAGTGCNTTTT---AGAT-GTATA--T---TTGGC-TGGGATCAA--TTTGTG-TAATT------TAAA--T-CTTTA-----TTTGAT---AATTTGC-AAA-CCTAGTCATTAGTTGC-AAAC--CTG--TG-TAATT-TA----CATGTT-TATTTN--CT-CATTTGCAAACCTAG-TCAT--GAG---TTGCANAC-----------------TAG--T-------AAACGG-TTGT--T---TGTATTTA-NTTGT--CCCA-GCC--AA-TTAAT--T-TA----TT--GT-CTAT---------CGCG---TCATTT-GTCTGATCTTGGT-----TTATAACGCCA-ATAGTT--T---TGATCATGATAATAA--ATGACATATTCAC-TNA---------A-------TATTT---------TGTT--AT------------A---------------T-----G----G--TANTC--------------AGTAACAAAANC--TGAGCTTCGGAATGC-CA----GTATTT-------TTAT-----T--C--CTT----G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACANTTTCTT
Reference ( gi|1 ) : GTGCGTCACCTTTTTGATATTTT-T-GTTTGTTTT---AGAT-GTATA--T---TTGG--TGGGATCAA--TTTGTG-TAATT------TAAA--T-GTTTA-----TTTGAT---AATTTGC-TAA-CCTAG-CATTAGCTGC-AAAC--CTG--TG-TAATT-TA----CTTGCT-TATTTT--CT-CTCTTGCAAACCTAG-TTAT--GAG---TTGCATAC-------C---------TAG--C-------AAACGG-TTGT--T---TGTATTTA-GTTGT--CCCA-GCC--AA-TTAAT--------------GT-CTAT---------CATA---CCATTT-GTTTGATCTTGGT-----TTATAACACCA-ACAGTT--T---TGATCATGATAATAA--ATGCCATATTCAC-TAA---------A-------TATTT---------TGTT--A-------------A---------------T-----A----A--TACTT--------------AGTAACAGAATA--TGGGCTGCGAAATGC-CA----GTATTT-------TTAT-----T--T--CTT----G----TTTTCTAGC---GCAAAATTGCTGAATATCAAAGACAATTTGTT
gi|9 : GTACGCCACCTTTTTGATATTTT-TAGTGCTTTTT---AGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGTAAA--TCTTTTA-----TTTGATAAAAATTTGCAAAA-CTTAGTCATTAGTTGC-AAA---CTG--TG-TAATT-TA----CATGTT-TAATTG--CTGCATTTGCAAGCCTAGACAAT--AAG---TTAAAT-----------------------------------CGGTTTGTTCT---TGTATTTA-CTTGT--CCCA-GCC--AAGTTAATATTCTAATATTTTAGT-CTAT----------GTG---TCATTT-GTCTGATCTTGG------TTATAACGCCACATAGTT--T---TGATCATGA
gi|8 : tGTACGCCACCTTTTTGATATTTT-TAGTGCTTTTT---AGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGTAAA--TCTTTTA-----TTTGATAAAAATTTGCAAAA-CTTAGTCATTAGTTGC-AAA---CTG--TG-TAATT-TA----CATGTT-TAATTG--CTGCATTTGCAAGCCTAGACAAT--AAG---TTAAAT-----------------------------------CGGTTTGTTCT---TGTATTTA-CTTGT--CCCA-GCC--AAGTTAATATTCTAATATTTTAGT-CTAT----------GTG---TCATTT-GTCTGATCTTGG------TTATAACGCCACATAGTT--T---TGATCATGA
gi|13 : tGTACGCCACCTTTTTGATATTTT-TAGT--GTTTT---AGAT-GTATA--CATATTGGC-TGGGATCAA--CTTGTG-TAATT------T
gi|4 : atatCGCCACCTTTTTGATATTTT-T-AGTGCTTTT---AGAT-GTATA--T------------------------TG-TAGTT------TAAA--T-CTTTA-----TTTAAT---CCTTTGC-AAA-CATAGTCATTAGTTGC-AAAC--
gi|5 : aCGTCATCTTTTTGATATTTT-TCGTGT-TTTT---AGAT-ATATA--T---TGGC--TGGGACCAA--TTTGTG-AAACA------TAAA--T-CTTTA-----TTTGAG---CATTTGC-ATA-CCTAGTCATTA---GT-AAACGGTTGTTTG-TATTTCTATTGTTTTGCTGTATTTT--gtagtcattagtaaacggttgtttgtatttagtcgtccctgccaatttattttctatagtttagtccatggcgtcatttgtttgttctcggtgttttgatcatgataataaatgacatattcacttaaccttttgttatattttatcgcacatgtcaaagtaattagtaacaaaaactgagcttcggaatgccagtatttttattccttgttttttagcgcaaaattg
gi|6 : aCCTTTTTGATACTAT-T-G---GTCTTATAAGAT-GTAT---T---GTGGC-TAAGATCAA--TTTGTG-TAATT------TACA--T-ATCTA-----TTTGCT---TATTTGC-AAA-CATAG-TA--ATTTGT-AAAC--agactattgcgtcatttgttttatttggtttataaggccaatagtttttgtaatgataataaatgacatattcacttaaccttttgttatagtttatcgcacatgttaaggtaatcagtaacaaaaactaagcttcggaatgccagtatttttattccttgttttatagcgcaaaa
gi|3 : CTTTTTGATATTTTGT-G---GTT-----AGAT-G-ATA--T------G--TG--ATCAA--T--GTG-TAAAT------TTAA--T-GGTTA-----TT-GAT---AAT--GC-TAA-CCTAG-CATTAGC-GC-AAAC--C-G--TG-TA--T-TA----CTTGCT-TATTCT--CT----TTGCAAACC--A-TCAT--GA----TTGCATAC-----------------TAG--C-------AA-CGG-TTGT--T---T--ATTTA-GTTGT--CCCA-GCC--CA-ATAAT---------------T-CTAT---------CATA---CCATTT--TTTGATCTTG-T-----TTATAACACCA-ACAG-T--T---TGATCA----AATAAATATGCCATA-TCAC-TAA---------A-------TA-TT---------TGGT--A-------------A---------------T-----A----A--T-CTT--------------AGTAACAGAATA--T-GGCTTCGAAA-GG-CA----GTA-AT-------TTA------T--T--CTT----G----TTTCTTAGC---GCAAAA-TGCTGAAT-TCCAAGACAgattgtcccagataattaattatgtatatgttggtttattgcctcatttcgatgatcttggtggatctcataatttctttgatcgtgatgggtaatgaaatgttcactaaaacttttttatttcattggatgtttcaatggttattcagtagcaagattcgagctatagaatgccaggaattcttttcataagggttttctataacaaatttgctg
gi|10 : caATATTTT-TAGTATTTTTT---AAA----ATG--T---GTCG--T------AA--TTTGTGCTAATT------TAAAAAT-CTTTA-----TTT-ATCC-ATTTTGC-AAAACCCAGGCATTAGTTGCAAAAC--CTG--TGTTAATT-TA----CATGTA-TATATTAGCG-CACCTGTAAACCTAA-TCAT--TAGGT-TTGCAAAC-------CTTAGGCATTTAG--T-------AAACGGATTGT--TTTGTATATTTGCGTTGTCCCCCACGCC--AA-ATAtt
gi|2 : tgtacaccaattttttcttaaatatTG-TAATT-------AAA--C-GTCTACACCATTTAA----AGTC--C-AAA-CCTAGTCATTAGTTGC-AAAA--CTG--TG-TAATT-TA----CATGTT-TAATTG--CT-CATTTACAAACCTAG-TCAT---------------------------------TAG--T-------AAGCGG-TTGT--A---TGTAATTA-CTTGT--CCCA-GCC--AA-TTAATTTTCTATATTTTA-GT-TTAT---------TGCG---TCATTC-GTCTTATCTTTGT-----TTATAACGACA-ATAGTT--T---TGATCATGATAATAA--ATGACATATTCGCTTAACCATTTGTTA-------TATTTTATTGCACGTGTC--A-------------A---------------------G----G--TAATC--------------AGTAACAAAAAC--TGAGCTTCGGAATGC-CA----GTATTT-------TTAT-----T--C--CTT----A----TTTT-TAGC---GCAAAATTGCTTAACAT-AAAGAT-ATTTCTTcattttctatattttagatctaattgcgt
gi|14 : ------TACA--T-CTTTA-----TTTGAT---CATTTGC-AAA-CAAAGTCATTAGTTGT-AAAC--CTG--TG-TAATT-TA----CATGTT-TATTTgccaagtaa
gi|6 : gAAT--TTG--TG-TAATT-TA----CATATC-TATTT-----------GC---------TTAT--------TTGCAAAC-------A---------TAG--T-------AA--------T--T---TGTAAACG-ATTGT--CCCA-GAT--AA-TTAATTATGTATATGTTG-GT-TTAT---------TGCC---TCATTT-CGATGATCTTGGTGGATCTCATAATTTC-------T--T---TGATCGTGATGGGTA--ATGAAATGTTCAC-TAA---------AACTTTTTTATTTCATTGGA--TGTTTCA-------------A---------------T-----G----GT-TATTC--------------AGTAGCAAGATT--CGAGCTATAGAATGC-CA----GGAATT-------CT-T-----T--T--CATAAGGG----TTTTCTATA---ACAAATTTGCTGgc
gi|4 : cctttttgatactattggtcttataagatgtattgtggctaagatc--TG-TAGTT-TA----AATCTT-TATTTA--AT-CCTTTGCAAACATAG-TCAT--TAG---TTGCAAACGTAGTCAT---------TAG--T-------AAACGG-TTGT--T---TGTATTTA-GTCGT--CCCT-GCC--AA-TTTAT--------------TTTCTATAGTTTAGTCCATGGCGTCATTT-GTTTGTTCTCGGT--------------------GTT--T---TGATCATGATAATAA--ATGACATATTCAC-TTA---------A-------CCTTT---------TGTT--ATATTTTATCGCACA---------------TGTCAAA----G--TAATT--------------AGTAACAAAAAC--TGAGCTTCGGAATGC-CA----GTATTT-------TTAT-----T--C--CTT----G----TTTTTTAGC---GCAAAATTG
gi|5 : acgccacctttttgatatttttagtgcttttagatgtatatAAATCT---TTATTTGAGCATTTGCATAC-------C---------TAG--TCATTAGTAAACGG-TTGT--T---TGTATTTCTATTGT--TTT--GCTGTAT-TTTA---------------GA-CTAT---------TGCG---TCATTT-GTTTTAT-TTGGT-----TTATAAGGCCA-ATAGTT--T---TTGTAATGATAATAA--ATGACATATTCAC-TTA---------A-------CCTTT---------TGTT--AT------------AGTTTATCGCACATGTT-----A----AGGTAATC--------------AGTAACAAAAAC--TAAGCTTCGGAATGC-CA----GTATTT-------TTAT-----T--C--CTT----G----TTTTATAGC---GCAAAA
gi|18 : acgtcatctttttgatatttttcgtgtttttagatatatattggctgggaccaatttgtgaaacatT--GAG---CAGCACAC-------AA--------TAG--T-------AAACGG-TTGT--T---TGTATTTA-CTTGT--CCC
gi|7 : ---TTGCAAAC-------T---------TAGTTC--------------TTGT--TCT-TGTATTAA-ATTGC--CCCA-GCC--AA-TTAA--------------------A-----------ATA-----ATTTCGTAT-ATTTTGCT-----TTATTGCGT-----ATTTGTT---TGATCATGATAAC-----TGACATGTTCAC-ATA---------A-------TATTT---------C-----A-------------A---------------T-----ATGCTA--TATTC--------------AGTAACAAAATC--TCAGCTACGGAATACGCAAGGGGTATTTATTTTAGTTAT-----T--T--TTT----T----TTT
gi|11 : aatgttatttgaataaaaaaaaatagattggacaaatgaaaaaaatagtacacactccattatatgctatgtttagatgtatattggctagggtcaatttgtatttgttcaT--------------GT-ATAT---------CAAG---TCATTT-GTTTGATCTTGGT-----TTATTACGTTA-----TT--TATTTGATCATGATAACAA--ATGACATATTTAC-CAA---------A-------ACTTT---------TGTT--ATTTC---------A---------------TTG---G----A--TATTTCAATGATTATAGCAAGTAACAAAATC--CGAGCTACGGAATGC-CA----GAATTT-------CTAC-----TCAT--ATG----G----GTTTCTGGT---GCAAAATTGCa
gi|12 : ttTC--------------AGGAACAAAACAACTGAGCTTCGGAATGC-CA----GTATTT-------CTGTGAGTGT--CGGCTT----AAATTTTTTTTAGCAGAGCAAAATTGCTTAAT
gi|19 : tttttaatactttattgccaaacccgaaaacgtgtcaagtgtccaaGGAATGC-CA----GTATTT-------TTA-------------TT----G----TTTTTTATC---GCAAA
gi|16 : C-CA----GTATTT-------TTAT-----T--C--CTT----A----TTTTTAAAC---GCAAAATTGCTGAATATAAAA
gi|17 : TATTT-------TTAT-----T--C--CTT----A----TTTTTTAGC---GCAAAATGGCTTAATAT--AAAACACTTTtctaataattat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTGTTTATTACGTAATTTGTCTGTTCAATTTCTTGCGTCATTTATTTCCATGTTAATAAATGACATACTCAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 11111111 111 333333333333 11 222222222 2222 1 1111 11111 1111111 11111 66666666666666666666666 111111 8888888888888888888888 111111111 33333333333333333333333333333333333333333333333333 1111111111 1
lowQualScore : 66666666 3 888 8 666666666666 0 22 4 111111111 55 88888 0000 2 0 3 666 3 0000 00000 3 3333333 6666 2 2 22 66666 3 8 55555555555555555555555 3 555 55 666666 888 55 4 88 8888888888888888888888 3 8 1 4 2 77 3 55 666 66 1 999999999 66 55555555555555555555555555555555555555555555555555 777 2 3 7777 555 3 88888 44 0000000000 666 1 8 2 0 2
lowQualScore : ........ . ... . ............ . .. . ......... .. ..... .... . . . ... . .... ..... . ....... .... . . .. ..... . . ....................... . ... .. ...... ... .. . .. ...................... . . . . . .. . .. ... .. . ......... .. .................................................. ... . . .... ... . ..... .. .......... ... . . . . .
lowQualScore : 11111111 4 888 9 999999999999 1 22 0 444444444 55 44444 3333 0 7 2 444 6 0000 88888 1 2222222 1111 9 9 66 44444 6 0 33333333333333333333333 6 555 00 999999 333 00 0 88 8888888888888888888888 3 6 8 7 0 44 6 00 444 11 0 111111111 99 44444444444444444444444444444444444444444444444444 111 3 6 7777 888 3 33333 66 0000000000 444 0 0 5 8 5
consensus : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TATTTGCT-----CA-TTTGCAAACCTAGTC-AT-AG--TTGCAAAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--AT------A-TTT-----------T-A-G--GT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACANTTTNTT
Reference ( family-1610 ) : GTACGCCACCTTTTTG--------ATATTTTTAGTGCNTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TATTTNCT-----CA-TTTGCAAACCTAGTC-ATGAG--TTGCANAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------TATTTTGTT--AT------A-T-----------------G--GT-ANTC--------------AGTAACAAAAN--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACANTTTCTT
gi|1 : GTGCGTCACCTTTTTG--------ATATTTTT-GTTTGTTTTAGAT-GTATA--T---TTGG--TGGGATCAA--TTTGTG-TAATT------T--AAA--TG-T---TTATTTGAT---AATTTGC-TAACCTAG-CATTAGCTG---C-AAAC--CTGT-----G-TAATT-------TACTT----GC-T-TATTTTCT-----CT-CTTGCAAACCTAGTT-ATGAG--TTGCATACC---------T-AGCAAACGG-TTGT--T---TGTATTTA-G-TTGT--CCCA-GCCAA-TTAAT----------------------G-TCTATCATACCATTTGTTTGATCTTGGTTTATAACACCA-AC-AGTT--T---TGATCATGATAATAA--ATGCCATATTCACTAAA-------TATTTTGTT--A-------A-T-----------------A--AT-ACTT--------------AGTAACAGAAT--ATGGGCTGCGAAATGC-CA----GTAT---TTTTA-T-----TT--CT---T-G----TTTTCTAGC---GCAAAATTGCTGAATATCAAAGACAATTTGTT
gi|10 : GTACACCAATTTTTTCTTAAATATATATTTTTAGTATTTTTTAAA----ATG--T---GTCG--------TAA--TTTGTGCTAATT------TAAAAA--TC-T---TTATTT-ATCC-ATTTTGCAAAACCCAGGCATTAGTTG---CAAAAC--CTGT-----GTTAATT-------TACAT----GTATATATTAGCG-----CA-CCTGTAAACCTAATC-ATTAGGTTTGCAAACCTTAGGCATTT-AGTAAACGGATTGT--TTTGTATATTTGCG-TTGTCCCCCACGCCA----AAT-A-------C------ATT---T-TCTAT
gi|11 : tTT---G-TATATCAAGTCATTTGTTTGATCTTGGTTTATTACGTTA-TTTA--T--T---TGATCATGATAACAA--ATGACATATTTACCAAA-------ACTTTTGTT--ATTTC---A-TTG---------------G--AT-ATTTCAATGATTATAGCAAGTAACAAAAT--CCGAGCTACGGAATGC-CA----GAAT---TTCTA-C-----TC--ATA--TGG----GTTTCTGGT---GCAAAATTGCattttagatctaattgcgt
gi|12 : t-AATC--------------AGGAACAAAACAACTGAGCTTCGGAATGC-CA----GTAT---TTCTG-TGAGTGTCGGCT---T-AAATTTTTTTTAGCAGAGCAAAATTGCTTAAT
gi|13 : tttttaatactttattgccaaacccgaaaacgtgtcaagtgtccGTACGCCACCTTTTTG--------ATATTTTTAGTG--TTTTAGAT-GTATA--CATATTGG-CTGGGATCAA--CTTGTG-TAATT------T--
gi|14 : atat------T--ACA--TC-T---TTATTTGAT---CATTTGC-AAACAAAGTCATTAGTTG---T-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TATTTGC
gi|15 : gTT---G-TTTATTACGTAATTTGTCTGTTC--AATTTCTTGCGTCA-TT-TATT--T---C---CATGTTAATAA--ATGACATACTCAC
gi|16 : C-CA----GTAT---TTTTA-T-----TC--CT---T-A----TTTTTAAAC---GCAAAATTGCTGAATAT-AAA
gi|17 : TAT---TTTTA-T-----TC--CT---T-A----TTTTTTAGC---GCAAAATGGCTTAATAT-AAA-ACACTTTatctaataattat
gi|18 : TGAG--CAGCACACAA--------T-AGTAAACGG-TTGT--T---TGTATTTA-C-TTGT--CCCaattat
gi|19 : GGAATGC-CA----GTAT---TTTTA------------T---T-G----TTTTTTATC---GCAAA
gi|2 : TG-TAATT---------AAACGTC-TACACCATTTAA----AGTC--C-AAACCTAGTCATTAGTTG---C-AAAA--CTGT-----G-TAATT-------TACAT----GT-T-TAATTGCT-----CA-TTTACAAACCTAGTC-AT-----------------------T-AGTAAGCGG-TTGT--A---TGTAATTA-C-TTGT--CCCA-GCCAA-TTAAT-T-------TTCTAT-ATTTTAG-TTTATTGCGTCATTCGTCTTATCTTTGTTTATAACGACA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCGCTTAA-------CCATTTGTT--AT------A-TTTTATTGCACGTGTCAAG--GT-AATC--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-A-----TTTTTAGC---GCAAAATTGCTTAACAT-AAAGATA-TTTCTT
gi|3 : CTTTTTG--------ATATTTT--GTGG---TTAGAT-G-ATA--T----------GTGATCAA--T--GTG-TAAAT------T--TAA--TG-G---TTATT-GAT---AAT--GC-TAACCTAG-CATTAGC-G---C-AAAC--C-GT-----G-TA--T-------TACTT----GC-T-TATT--CT-----C--TTTGCAAACC--ATC-ATGA---TTGCATAC----------T-AGCAA-CGG-TTGT--T---T--ATTTA-G-TTGT--CCCA-GCCCA-ATAAT------------------------TCTATCATACCATTT-TTTGATCTT-GTTTATAACACCA-AC-AG-T--T---TGATCA----AATAAATATGCCATA-TCACTAAA-------TATTTGGTA--AT------A----------------------AT--CTT--------------AGTAACAGAAT--ATG-GCTTCGAAA-GG-CA----GTA----ATTTA-T-----T---CT---T-G----TTTCTTAGC---GCAAAA-TGCTGAATTC-CAAGACATTgccaagtaa
gi|4 : caACGCCACCTTTTTG--------ATATTTTTAGTGC-TTTTAGAT-GTATA--T------------------------TG-TAGTT------T--AAA--TC-T---TTATTTAAT---CCTTTGC-AAACATAGTCATTAGTTG---C-AAAC----GTA----G-TCATTAG-----TAAAC----GG-T-TGTTT
gi|4 : T-----G-TAGTT-------TAAAT----CT-T-TATTTAAT-----CC-TTTGCAAACATAGTC-ATTAG--TTGCAAACGTAGTCAT--T-AGTAAACGG-TTGT--T---TGTATTTA-G-TCGT--CCCT-GCCAA-TTTAT-T-------TTCTATAGTTTA-G-TCCATGGCGTCATTTGTTTGTTCTCGGT----------------GTT--T---TGATCATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--AT------A-TTTTATCGCACATGTCAAA--GT-AATT--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGgtatttagtcgtccctgccaatttattttctatagtttagtccatggcgtcatttgtttgttctcggtgttttgatcatgataataaatgacatattcacttaaccttttgttatattttatcgcacatgtcaaagtaattagtaacaaaaactgagcttcggaatgccagtatttttattccttgttttttagcgcaaaattg
gi|5 : acgccacctttttgatatttttagtgcttttagatgtatatACGTCATCTTTTTG--------ATATTTTTCGTG-TTTTTAGAT-ATATA--T---T-GG-CTGGGACCAA--TTTGTG-AAACA------T--AAA--TC-T---TTATTTGAG---CATTTGC-ATACCTAGTCATTAGT-------AAAC----G------G-TTGTT-------TGTAT----TT-C-TATT
gi|5 : ATTGGCTGGGAC-CAAT--TTGT-----G-AAACA-------TAAAT----CT-T-TATTTGAG-----CA-TTTGCATACCTAGTC-AT-----------------------T-AGTAAACGG-TTGT--T---TGTATTTC-TATTGT--TTT--GCTG---TATT-T-------T------A-----G-ACTATTGCGTCATTTGTTTTAT-TTGGTTTATAAGGCCA-AT-AGTT--T---TTGTAATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--AT------AGTTTATCGCACATGTTAA-G--GT-AATC--------------AGTAACAAAAA--CTAAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTATAGC---GCAAAAgttttgctgtattttagactattgcgtcatttgttttatttggtttataaggccaatagtttttgtaatgataataaatgacatattcacttaaccttttgttatagtttatcgcacatgttaaggtaatcagtaacaaaaactaagcttcggaatgccagtatttttattccttgttttatagcgcaaaa
gi|6 : acgtcatctttttgatatttttcgtgtttttagatatatCCTTTTTG--------ATACTATTGGT-CTTATAAGAT-GTAT---T---GTGG-CTAAGATCAA--TTTGTG-TAATT------T--ACA--TA-T---CTATTTGCT---TATTTGC-AAACATAGTAAT---TTG---T-AAACGATTGTCCCAGA-TAATTAATTATGTATATGTTGGT-T-TATTGCCT-----CA-TTT
gi|6 : AAT--TTGT-----G-TAATT-------TACAT----AT-C-TATTTGCT-----TA-TTTGCAAACATAGTA-AT-----TTG-------------------TAAACG---------------------A-TTGT--CCCA-GATAA-TTAAT-TATGTATAT------GTT---GGTTTATTGCCTCATTTCGATGATCTTGGTGGAT----CTC-AT-AATT--TCTTTGATCGTGATGGGTA--ATGAAATGTTCACTAAAACTTTTTTATTTCATTGGATGTTTCAA-T-----------------G--GTTATTC--------------AGTAGCAAGAT--TCGAGCTATAGAATGC-CA----GGAA---TTCTT-T-----TC--ATAAGG-G----TTTTCTATA---ACAAATTTGCTcgatgatcttggtggatctcataatttctttgatcgtgatgggtaatgaaatgttcactaaaacttttttatttcattggatgtttcaatggttattcagtagcaagattcgagctatagaatgccaggaattcttttcataagggttttctataacaaatttgctg
gi|7 : cctttttgatactattggtcttataagatgtattgtggctaagatcTT-------TAGAT----GT-A-TATTGGCTAGGGTCAATTTGTA--TTTGTTC-AT------TGCAAAC----------TTAGTT--C---TTGT--TCT-TGTATTAA-A-TTGC--CCCA-GCCAA-TTAAA-A-------T------A----------ATTTCGT-AT-------ATTTTGCTTTATTGCG-----T-ATTTGTT---TGATCATGATAAC-----TGACATGTTCACATAA-------TATTTCA----AT------A-T-----------------GCTAT-ATTC--------------AGTAACAAAAT--CTCAGCTACGGAATACGCAAGGGGTATTTATTTTAGT-----TA--TT---T-T----TTTTTTAg
gi|8 : aatgttatttgaataaaaaaaaatagattggacaaatgaaaaaaatagtacacactccattatatgctatgGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGT--AAA--TCTT---TTATTTGATAAAAATTTGCAAAACTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TAATTGCTG----CA-TTTGCAAGCCTAGACAATAAG--TT--AAAT----------C-GGT-------TTGTTCT---TGTATTTA-C-TTGT--CCCA-GCCAAGTTAATATTCTAA--T------ATTTTAG-TCTAT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTT--T---TGATCATGA
gi|9 : tGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGT--AAA--TCTT---TTATTTGATAAAAATTTGCAAAACTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TAATTGCTG----CA-TTTGCAAGCCTAGACAATAAG--TT--AAAT----------C-GGT-------TTGTTCT---TGTATTTA-C-TTGT--CCCA-GCCAAGTTAATATTCTAA--T------ATTTTAG-TCTAT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTT--T---TGATCATGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 333333333333 11 222222222 2222 1 1111 11111 1111111 11111 666666666666666666666666 1 111111 8888888888888888888888 111111111 000000000000000000000000000000000000000000000000000000 1111111111
lowQualScore : 66666666 3 999 8 666666666666 0 22 4 111111111 55 88888 0000 2 0 3 666 3 0000 00000 3 3333333 6666 2 2 6666 88888 3 3 4 888888888888888888888888 3 3 0 666666 888 55 4 88 8888888888888888888888 3 8 1 4 2 77 3 55 666 66 1 888888888 3 66 777777777777777777777777777777777777777777777777777777 777 1 3 7777 555 3 88888 44 0000000000 666 1 8 2 1 1
lowQualScore : ........ . ... . ............ . .. . ......... .. ..... .... . . . ... . .... ..... . ....... .... . . .... ..... . . . ........................ . . . ...... ... .. . .. ...................... . . . . . .. . .. ... .. . ......... . .. ...................................................... ... . . .... ... . ..... .. .......... ... . . . . .
lowQualScore : 11111111 4 333 9 999999999999 1 22 0 444444444 55 44444 3333 0 7 2 444 6 0000 88888 1 2222222 1111 9 9 1111 33333 3 2 0 888888888888888888888888 6 7 9 999999 333 00 0 88 8888888888888888888888 3 6 8 7 0 44 6 00 444 11 0 444444444 1 99 111111111111111111111111111111111111111111111111111111 444 0 6 7777 888 3 33333 66 0000000000 444 0 0 5 0 0
consensus : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-----CA-TTTGCAAACCTAGTCA-T-AG--TTGCA-AAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
Reference ( family-1610 ) : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-----CA-TTTGCAAACCTAGTCA-T-AG--TTGCA-AAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACANTTTNTT
gi|1 : GTGCGTCACCTTTTTG--------ATATTTTT-GTTTGTTTTAGAT-GTATA--T---TTGG--TGGGATCAA--TTTGTG-TAATT------T--AAA--TG-T---TTATTTGAT---AATTTGC-TAACCTAG-CATTAGCTG---C-AAAC--CTGT-----G-TAATT-------TACTT----GC-T-TA----TTTTCT-----CT-CTTGCAAACCTAGTTA-TGAG--TTGCATACC----------T-AGCAAACGG-TTGT--T---TGTATTTA-G-TTGT--CCCA-GCCAA-TTAAT----------------------G-TCTATCATACCATTTGTTTGATCTTGGTTTATAACACCA-AC-AGTT--T---TGATCATGATAATAA--ATGCCATATTCACTAAA-------TATTTTGTT--A-AT--------------------------------AAT-ACTT--------------AGTAACAGAAT--ATGGGCTGCGAAATGC-CA----GTAT---TTTTA-T-----TT--CT---T-G----TTTTCTAGC---GCAAAATTGCTGAATATCAAAGACAATTTGTT
gi|10 : GTACACCAATTTTTTCTTAAATATATATTTTTAGTATTTTTTAAA----ATG--T---GTCG--------TAA--TTTGTGCTAATT------TAAAAA--TC-T---TTATTT-ATCC-ATTTTGCAAAACCCAGGCATTAGTTG---CAAAAC--CTGT-----GTTAATT-------TACAT----GTATATA----TTAGCG-----CA-CCTGTAAACCTAATCATT-AGGTTTGCA-AACCTTAGGCATTT-AGTAAACGGATTGT--TTTGTATATTTGCG-TTGTCCCCCACGCCA----AAT-A-------C------ATT---T-TCTAT
gi|11 : tTT---G-TATATCAAGTCATTTGTTTGATCTTGGTTTATTACGTTA-TTTA--T--T---TGATCATGATAACAA--ATGACATATTTACCAAA-------ACTTTTGTT--AT-TTCATT-------------G-------------GAT-ATTTCAATGATTATAGCAAGTAACAAAAT--CCGAGCTACGGAATGC-CA----GAAT---TTCTA-C-----TC--ATA--TGG----GTTTCTGGT---GCAAAATTGCattttagatctaattgcgt
gi|12 : t-AATC--------------AGGAACAAAACAACTGAGCTTCGGAATGC-CA----GTAT---TTCTG-TGAGTGTCGGCT---T-AAATTTTTTTTAGCAGAGCAAAATTGCTTAAT
gi|13 : tttttaatactttattgccaaacccgaaaacgtgtcaagtgtccGTACGCCACCTTTTTG--------ATATTTTTAGTG--TTTTAGAT-GTATA--CATATTGG-CTGGGATCAA--CTTGTG-TAATT------T--
gi|14 : atat------T--ACA--TC-T---TTATTTGAT---CATTTGC-AAACAAAGTCATTAGTTG---T-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGC
gi|15 : gTT---G-TTTATTACGTAATTTGTCTGTTC--AATTTCTTGCGTCA-TT-TATT--T---C---CATGTTAATAA--ATGACATACTCAC
gi|16 : C-CA----GTAT---TTTTA-T-----TC--CT---T-A----TTTTTAAAC---GCAAAATTGCTGAATAT-AAA
gi|17 : TAT---TTTTA-T-----TC--CT---T-A----TTTTTTAGC---GCAAAATGGCTTAATAT-AAA-ACACTTTatctaataattat
gi|18 : GCA-CACAA--------T-AGTAAACGG-TTGT--T---TGTATTTA-C-TTGT--CCCaattat
gi|19 : tgagcaGGAATGC-CA----GTAT---TTTTA------------T---T-G----TTTTTTATC---GCAAA
gi|2 : TG-TAATT---------AAACGTC-TACACCATTTAA----AGTC--C-AAACCTAGTCATTAGTTG---C-AAAA--CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCT-----CA-TTTACAAACCTAGTCA-T------------------------T-AGTAAGCGG-TTGT--A---TGTAATTA-C-TTGT--CCCA-GCCAA-TTAAT-T-------TTCTAT-ATTTTAG-TTTATTGCGTCATTCGTCTTATCTTTGTTTATAACGACA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCGCTTAA-------CCATTTGTT--ATATT--TTATTGCACGTGTCAA-------------GGT-AATC--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-A-----TTTTTAGC---GCAAAATTGCTTAACAT-AAAGATATTTCT
gi|3 : CTTTTTG--------ATATTTT--GTGGTT---AGAT-G-ATA--T----------GTGATCAA--T--GTG-TAAAT------T--TAA--TG-G---TTATT-GAT---AAT--GC-TAACCTAG-CATTAGC-G---C-AAAC--C-GT-----G-TA--T-------TACTT----GC-T-TA----TT--CT-----C--TTTGCAAACC--ATCA-T-GA--TTGCA-TAC----------T-AGCAA-CGG-TTGT--T---T--ATTTA-G-TTGT--CCCA-GCCCA-ATAAT------------------------TCTATCATACCATTT-TTTGATCTT-GTTTATAACACCA-AC-AG-T--T---TGATCA----AATAAATATGCCATA-TCACTAAA-------TATTTGGTA--ATAAT------------------------------------CTT--------------AGTAACAGAAT--ATG-GCTTCGAAA-GG-CA----GTA----ATTTA-T-----T---CT---T-G----TTTCTTAGC---GCAAAA-TGCTGAATTC-CAAGACATTgccaagtaa
gi|4 : caACGCCACCTTTTTG--------ATATTTTTAGTGC-TTTTAGAT-GTATA--T------------------------TG-TAGTT------T--AAA--TC-T---TTATTTAAT---CCTTTGC-AAACATAGTCATTAGTTG---C-AAAC----GTA----G-TCATTAG-----TAAAC----GG-T-TG----TTTG
gi|4 : T-----G-TAGTT-------TAAAT----CT-T-TA----TTTAAT-----CC-TTTGCAAACATAGTCA-TTAG--TTGCA-AACGTAGTCAT--T-AGTAAACGG-TTGT--T---TGTATTTA-G-TCGT--CCCT-GCCAA-TTTAT-T-------TTCTATAGTTTA-G-TCCATGGCGTCATTTGTTTGTTCTCGGT----------------GTT--T---TGATCATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--ATATT--TTATCGCACATGTCAA-------------AGT-AATT--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGtatttagtcgtccctgccaatttattttctatagtttagtccatggcgtcatttgtttgttctcggtgttttgatcatgataataaatgacatattcacttaaccttttgttatattttatcgcacatgtcaaagtaattagtaacaaaaactgagcttcggaatgccagtatttttattccttgttttttagcgcaaaattg
gi|5 : acgccacctttttgatatttttagtgcttttagatgtatatACGTCATCTTTTTG--------ATATTTTTCGTG-TTTTTAGAT-ATATA--T---T-GG-CTGGGACCAA--TTTGTG-AAACA------T--AAA--TC-T---TTATTTGAG---CATTTGC-ATACCTAGTCATTAGT-------AAAC----G------G-TTGTT-------TGTAT----TT-C-TATTGTTTTGCTG----TA-TTT
gi|5 : ATTGGCTGGGAC-CAAT--TTGT-----G-AAACA-------TAAAT----CT-T-TA----TTTGAG-----CA-TTTGCATACCTAGTCA-T------------------------T-AGTAAACGG-TTGT--T---TGTATTTC-TATTGT--TTT--GCTG---TATT-T-------T------A-----G-ACTATTGCGTCATTTGTTTTAT-TTGGTTTATAAGGCCA-AT-AGTT--T---TTGTAATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--ATAGT--TT-------------ATCGCACATGTTAAGGT-AATC--------------AGTAACAAAAA--CTAAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTATAGC---GCAAAAtagactattgcgtcatttgttttatttggtttataaggccaatagtttttgtaatgataataaatgacatattcacttaaccttttgttatagtttatcgcacatgttaaggtaatcagtaacaaaaactaagcttcggaatgccagtatttttattccttgttttatagcgcaaaa
gi|6 : acgtcatctttttgatatttttcgtgtttttagatatatCCTTTTTG--------ATACTATTGGT-CTTATAAGAT-GTAT---T---GTGG-CTAAGATCAA--TTTGTG-TAATT------T--ACA--TA-T---CTATTTGCT---TATTTGC-AAACATAGTAAT---TTG---T-AAACGATTGTCCCAGA-TAATTAATTATGTATATGTTGGT-T-TA----TTGCCT-----CA-TTT
gi|6 : AAT--TTGT-----G-TAATT-------TACAT----AT-C-TA----TTTGCT-----TA-TTTGCAAAC------A-T-AG--T-----AAT----------T-TGTAAACG---------------------A-TTGT--CCCA-GATAA-TTAAT-TATGTATAT------GTT---GGTTTATTGCCTCATTTCGATGATCTTGGTGGAT----CTC-AT-AATT--TCTTTGATCGTGATGGGTA--ATGAAATGTTCACTAAAACTTTTTTATTTCATTGGATGTT--TC-------------AAT-----------GGTTATTC--------------AGTAGCAAGAT--TCGAGCTATAGAATGC-CA----GGAA---TTCTT-T-----TC--ATAAGG-G----TTTTCTATA---ACAAATTTGCTcgatgatcttggtggatctcataatttctttgatcgtgatgggtaatgaaatgttcactaaaacttttttatttcattggatgtttcaatggttattcagtagcaagattcgagctatagaatgccaggaattcttttcataagggttttctataacaaatttgctg
gi|7 : cctttttgatactattggtcttataagatgtattgtggctaagatcTT-------TAGAT----GT-A-TA----TTGGCTAGGGTCAATTTGTA--TTTGTTCA-T------TGCA-AAC----------TTAGTT--C---TTGT--TCT-TGTATTAA-A-TTGC--CCCA-GCCAA-TTAAA-A-------T------A----------ATTTCGT-AT-------ATTTTGCTTTATTGCG-----T-ATTTGTT---TGATCATGATAAC-----TGACATGTTCACATAA-------TATTTCA----ATATG--CT-------------A---------------T-ATTC--------------AGTAACAAAAT--CTCAGCTACGGAATACGCAAGGGGTATTTATTTTAGT-----TA--TT---T-T----TTTTTTAg
gi|8 : aatgttatttgaataaaaaaaaatagattggacaaatgaaaaaaatagtacacactccattatatgctatgGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGT--AAA--TCTT---TTATTTGATAAAAATTTGCAAAACTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCTG----CA-TTTGCAAGCCTAG--A-C-AA--T---A-AGT----------T-A--AATCGGTTTGTTCT---TGTATTTA-C-TTGT--CCCA-GCCAAGTTAATATTCTAA--T------ATTTTAG-TCTAT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTT--T---TGATCATGA
gi|9 : tGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGT--AAA--TCTT---TTATTTGATAAAAATTTGCAAAACTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCTG----CA-TTTGCAAGCCTAG--A-C-AA--T---A-AGT----------T-A--AATCGGTTTGTTCT---TGTATTTA-C-TTGT--CCCA-GCCAAGTTAATATTCTAA--T------ATTTTAG-TCTAT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTT--T---TGATCATGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 333333333333 11 222222222 2222 1 1111 11111 1111111 11111 666666666666666666666666 1 111111 8888888888888888888888 111111111 000000000000000000000000000000000000000000000000000000 1111111111
lowQualScore : 66666666 3 999 8 666666666666 0 22 4 111111111 55 88888 0000 2 0 3 666 3 0000 00000 3 3333333 6666 2 2 6666 88888 3 3 4 888888888888888888888888 3 3 0 666666 888 55 4 88 8888888888888888888888 3 8 1 4 2 77 3 55 666 66 1 888888888 3 66 777777777777777777777777777777777777777777777777777777 777 1 3 7777 555 3 88888 44 0000000000 666 1 8 2 1 1
lowQualScore : ........ . ... . ............ . .. . ......... .. ..... .... . . . ... . .... ..... . ....... .... . . .... ..... . . . ........................ . . . ...... ... .. . .. ...................... . . . . . .. . .. ... .. . ......... . .. ...................................................... ... . . .... ... . ..... .. .......... ... . . . . .
lowQualScore : 11111111 4 333 9 999999999999 1 22 0 444444444 55 44444 3333 0 7 2 444 6 0000 88888 1 2222222 1111 9 9 1111 33333 3 2 0 888888888888888888888888 6 7 9 999999 333 00 0 88 8888888888888888888888 3 6 8 7 0 44 6 00 444 11 0 444444444 1 99 111111111111111111111111111111111111111111111111111111 444 0 6 7777 888 3 33333 66 0000000000 444 0 0 5 2 0
consensus : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-----CA-TTTGCAAACCTAGTCA-T-AG--TTGCA-AAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
Reference ( family-1610 ) : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-----CA-TTTGCAAACCTAGTCA-T-AG--TTGCA-AAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
gi|1 : GTGCGTCACCTTTTTG--------ATATTTTT-GTTTGTTTTAGAT-GTATA--T---TTGG--TGGGATCAA--TTTGTG-TAATT------T--AAA--TG-T---TTATTTGAT---AATTTGC-TAACCTAG-CATTAGCTG---C-AAAC--CTGT-----G-TAATT-------TACTT----GC-T-TA----TTTTCT-----CT-CTTGCAAACCTAGTTA-TGAG--TTGCATACC----------T-AGCAAACGG-TTGT--T---TGTATTTA-G-TTGT--CCCA-GCCAA-TTAAT----------------------G-TCTATCATACCATTTGTTTGATCTTGGTTTATAACACCA-AC-AGTT--T---TGATCATGATAATAA--ATGCCATATTCACTAAA-------TATTTTGTT--A-AT--------------------------------AAT-ACTT--------------AGTAACAGAAT--ATGGGCTGCGAAATGC-CA----GTAT---TTTTA-T-----TT--CT---T-G----TTTTCTAGC---GCAAAATTGCTGAATATCAAAGACAATTTGTT
gi|10 : GTACACCAATTTTTTCTTAAATATATATTTTTAGTATTTTTTAAA----ATG--T---GTCG--------TAA--TTTGTGCTAATT------TAAAAA--TC-T---TTATTT-ATCC-ATTTTGCAAAACCCAGGCATTAGTTG---CAAAAC--CTGT-----GTTAATT-------TACAT----GTATATA----TTAGCG-----CA-CCTGTAAACCTAATCATT-AGGTTTGCA-AACCTTAGGCATTT-AGTAAACGGATTGT--TTTGTATATTTGCG-TTGTCCCCCACGCCA----AAT-A-------C------ATT---T-TCTAT
gi|11 : tTT---G-TATATCAAGTCATTTGTTTGATCTTGGTTTATTACGTTA-TTTA--T--T---TGATCATGATAACAA--ATGACATATTTACCAAA-------ACTTTTGTT--AT-TTCATT-------------G-------------GAT-ATTTCAATGATTATAGCAAGTAACAAAAT--CCGAGCTACGGAATGC-CA----GAAT---TTCTA-C-----TC--ATA--TGG----GTTTCTGGT---GCAAAATTGCattttagatctaattgcgt
gi|12 : t-AATC--------------AGGAACAAAACAACTGAGCTTCGGAATGC-CA----GTAT---TTCTG-TGAGTGTCGGCT---T-AAATTTTTTTTAGCAGAGCAAAATTGCTTAAT
gi|13 : tttttaatactttattgccaaacccgaaaacgtgtcaagtgtccGTACGCCACCTTTTTG--------ATATTTTTAGTG--TTTTAGAT-GTATA--CATATTGG-CTGGGATCAA--CTTGTG-TAATT------T--
gi|14 : atat------T--ACA--TC-T---TTATTTGAT---CATTTGC-AAACAAAGTCATTAGTTG---T-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGC
gi|15 : gTT---G-TTTATTACGTAATTTGTCTGTTC--AATTTCTTGCGTCA-TT-TATT--T---C---CATGTTAATAA--ATGACATACTCAC
gi|16 : C-CA----GTAT---TTTTA-T-----TC--CT---T-A----TTTTTAAAC---GCAAAATTGCTGAATAT-AAA
gi|17 : TAT---TTTTA-T-----TC--CT---T-A----TTTTTTAGC---GCAAAATGGCTTAATAT-AAA-ACACTTTatctaataattat
gi|18 : GCA-CACAA--------T-AGTAAACGG-TTGT--T---TGTATTTA-C-TTGT--CCCaattat
gi|19 : tgagcaGGAATGC-CA----GTAT---TTTTA------------T---T-G----TTTTTTATC---GCAAA
gi|2 : TG-TAATT---------AAACGTC-TACACCATTTAA----AGTC--C-AAACCTAGTCATTAGTTG---C-AAAA--CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCT-----CA-TTTACAAACCTAGTCA-T------------------------T-AGTAAGCGG-TTGT--A---TGTAATTA-C-TTGT--CCCA-GCCAA-TTAAT-T-------TTCTAT-ATTTTAG-TTTATTGCGTCATTCGTCTTATCTTTGTTTATAACGACA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCGCTTAA-------CCATTTGTT--ATATT--TTATTGCACGTGTCAA-------------GGT-AATC--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-A-----TTTTTAGC---GCAAAATTGCTTAACAT-AAAGATATTTCT
gi|3 : CTTTTTG--------ATATTTT--GTGGTT---AGAT-G-ATA--T----------GTGATCAA--T--GTG-TAAAT------T--TAA--TG-G---TTATT-GAT---AAT--GC-TAACCTAG-CATTAGC-G---C-AAAC--C-GT-----G-TA--T-------TACTT----GC-T-TA----TT--CT-----C--TTTGCAAACC--ATCA-T-GA--TTGCA-TAC----------T-AGCAA-CGG-TTGT--T---T--ATTTA-G-TTGT--CCCA-GCCCA-ATAAT------------------------TCTATCATACCATTT-TTTGATCTT-GTTTATAACACCA-AC-AG-T--T---TGATCA----AATAAATATGCCATA-TCACTAAA-------TATTTGGTA--ATAAT------------------------------------CTT--------------AGTAACAGAAT--ATG-GCTTCGAAA-GG-CA----GTA----ATTTA-T-----T---CT---T-G----TTTCTTAGC---GCAAAA-TGCTGAATTC-CAAGACATTgccaagtaa
gi|4 : caACGCCACCTTTTTG--------ATATTTTTAGTGC-TTTTAGAT-GTATA--T------------------------TG-TAGTT------T--AAA--TC-T---TTATTTAAT---CCTTTGC-AAACATAGTCATTAGTTG---C-AAAC----GTA----G-TCATTAG-----TAAAC----GG-T-TG----TTTG
gi|4 : T-----G-TAGTT-------TAAAT----CT-T-TA----TTTAAT-----CC-TTTGCAAACATAGTCA-TTAG--TTGCA-AACGTAGTCAT--T-AGTAAACGG-TTGT--T---TGTATTTA-G-TCGT--CCCT-GCCAA-TTTAT-T-------TTCTATAGTTTA-G-TCCATGGCGTCATTTGTTTGTTCTCGGT----------------GTT--T---TGATCATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--ATATT--TTATCGCACATGTCAA-------------AGT-AATT--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGtatttagtcgtccctgccaatttattttctatagtttagtccatggcgtcatttgtttgttctcggtgttttgatcatgataataaatgacatattcacttaaccttttgttatattttatcgcacatgtcaaagtaattagtaacaaaaactgagcttcggaatgccagtatttttattccttgttttttagcgcaaaattg
gi|5 : acgccacctttttgatatttttagtgcttttagatgtatatACGTCATCTTTTTG--------ATATTTTTCGTG-TTTTTAGAT-ATATA--T---T-GG-CTGGGACCAA--TTTGTG-AAACA------T--AAA--TC-T---TTATTTGAG---CATTTGC-ATACCTAGTCATTAGT-------AAAC----G------G-TTGTT-------TGTAT----TT-C-TATTGTTTTGCTG----TA-TTT
gi|5 : ATTGGCTGGGAC-CAAT--TTGT-----G-AAACA-------TAAAT----CT-T-TA----TTTGAG-----CA-TTTGCATACCTAGTCA-T------------------------T-AGTAAACGG-TTGT--T---TGTATTTC-TATTGT--TTT--GCTG---TATT-T-------T------A-----G-ACTATTGCGTCATTTGTTTTAT-TTGGTTTATAAGGCCA-AT-AGTT--T---TTGTAATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--ATAGT--TT-------------ATCGCACATGTTAAGGT-AATC--------------AGTAACAAAAA--CTAAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTATAGC---GCAAAAtagactattgcgtcatttgttttatttggtttataaggccaatagtttttgtaatgataataaatgacatattcacttaaccttttgttatagtttatcgcacatgttaaggtaatcagtaacaaaaactaagcttcggaatgccagtatttttattccttgttttatagcgcaaaa
gi|6 : acgtcatctttttgatatttttcgtgtttttagatatatCCTTTTTG--------ATACTATTGGT-CTTATAAGAT-GTAT---T---GTGG-CTAAGATCAA--TTTGTG-TAATT------T--ACA--TA-T---CTATTTGCT---TATTTGC-AAACATAGTAAT---TTG---T-AAACGATTGTCCCAGA-TAATTAATTATGTATATGTTGGT-T-TA----TTGCCT-----CA-TTT
gi|6 : AAT--TTGT-----G-TAATT-------TACAT----AT-C-TA----TTTGCT-----TA-TTTGCAAAC------A-T-AG--T-----AAT----------T-TGTAAACG---------------------A-TTGT--CCCA-GATAA-TTAAT-TATGTATAT------GTT---GGTTTATTGCCTCATTTCGATGATCTTGGTGGAT----CTC-AT-AATT--TCTTTGATCGTGATGGGTA--ATGAAATGTTCACTAAAACTTTTTTATTTCATTGGATGTT--TC-------------AAT-----------GGTTATTC--------------AGTAGCAAGAT--TCGAGCTATAGAATGC-CA----GGAA---TTCTT-T-----TC--ATAAGG-G----TTTTCTATA---ACAAATTTGCTcgatgatcttggtggatctcataatttctttgatcgtgatgggtaatgaaatgttcactaaaacttttttatttcattggatgtttcaatggttattcagtagcaagattcgagctatagaatgccaggaattcttttcataagggttttctataacaaatttgctg
gi|7 : cctttttgatactattggtcttataagatgtattgtggctaagatcTT-------TAGAT----GT-A-TA----TTGGCTAGGGTCAATTTGTA--TTTGTTCA-T------TGCA-AAC----------TTAGTT--C---TTGT--TCT-TGTATTAA-A-TTGC--CCCA-GCCAA-TTAAA-A-------T------A----------ATTTCGT-AT-------ATTTTGCTTTATTGCG-----T-ATTTGTT---TGATCATGATAAC-----TGACATGTTCACATAA-------TATTTCA----ATATG--CT-------------A---------------T-ATTC--------------AGTAACAAAAT--CTCAGCTACGGAATACGCAAGGGGTATTTATTTTAGT-----TA--TT---T-T----TTTTTTAg
gi|8 : aatgttatttgaataaaaaaaaatagattggacaaatgaaaaaaatagtacacactccattatatgctatgGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGT--AAA--TCTT---TTATTTGATAAAAATTTGCAAAACTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCTG----CA-TTTGCAAGCCTAG--A-C-AA--T---A-AGT----------T-A--AATCGGTTTGTTCT---TGTATTTA-C-TTGT--CCCA-GCCAAGTTAATATTCTAA--T------ATTTTAG-TCTAT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTT--T---TGATCATGA
gi|9 : tGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGTGTAAGA---TTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGT--AAA--TCTT---TTATTTGATAAAAATTTGCAAAACTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCTG----CA-TTTGCAAGCCTAG--A-C-AA--T---A-AGT----------T-A--AATCGGTTTGTTCT---TGTATTTA-C-TTGT--CCCA-GCCAAGTTAATATTCTAA--T------ATTTTAG-TCTAT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTT--T---TGATCATGA
blockSeqs : TTAAATAT A ATT G CATATTGGC TT C TACCGGT CG TACA AAAA A G GGA A CGAT CCCAG T AATTATG GTTG A A TTGT AGGGT A T T AGGTTTGCAAACCTTAGGCATT T A A TTTG CG CC C AG ATTCTAATATTTTA G C T T T CA T GT CTT AT A ACTTTTTTA T GG TCATTGGATATTTCAATGATTATAGCA CAA A G AGGG TTA G GAGTG GG TAAATT AGA T . G C T
blockSeqs : . A GGT G AGATTGGCC TT . TACCGGT . TT AAAA A T . . CC A . AG . . . . G . T . TAGTTGCAAACGTAGTCAT . A T TCT TA . . AG ATTCTAATATTTTA . T C T T CA . . . . T AC T . TTTATTGCACGTGTCAAGGTAATC T T . . . . . . AAGGG . G . G T
blockSeqs : . A GCT . AGATTGGCC . . TAA . TT CCA A T . . CC . . . . . . . G . T . GATTGCATAC . G T TCT C . . A TTTCTATATTTTA . T C A A T . . . . A CC G . TTTATCGCACATGTCAAAGTAATT A T . . . . . . ATGG . T . . T
blockSeqs : . C GCT . TGTGGC . . T . T C . T . . AC . . . . . . . G . T . TGCAAAC . A . TCT C . . A TTTCTATAGTTTA . C T A C T . . . . T TA T . TTTATCGCACATGTTAAGGTAATC T T . . . . . . TA . T .
blockSeqs : . G GC . TGTCG . . T . T A . T . . CC . . . . . . . . . T . AATAAGT . A . T G . . A TATGTATATGTT . G T A C A . . . . T CC T . TTCAATGGTTATTC A T . . . . . . TA . G
blockSeqs : . A GT . TTGGC . . T . G A . T . . TT . . . . . . . . . T . AATAAGT . A . A G . . A ACATT . T T T C A . . . . A CC C . GCTATATTC A T . . . . . . TG .
blockSeqs : . A CT . T . . T . T C . T . . TT . . . . . . . . . . . AGTAAT . T . T A . . A TTA . T A A C A . . . . T TA C . TCTT T A . . . . . . TA .
blockSeqs : . . G . T . . T . T C . T . . C . . . . . . . . . . . . . T . T A . . . ATA . T C A C A . . . . T A . . . . . . TG .
blockSeqs : . T . T T . . . . C . . . . . . . . . . . . . . . T C . . . . . . C . . . . . . . . . . . . TG .
blockSeqs : . . . C . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . TG .
blockSeqs : C . . . . . . . . . . . . . . TT
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqCons : TTGGC******* AGTAAGT***************** TTCTATATTTTA**********
originalCons : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATA--T---TTGG-CTGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-----CA-TTTGCAAACCTAGTCA-T-AG--TTGCA-AAC----------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAAT-T-------T------ATT---G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
finalCons : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GTATATTGGC-------TGGGATCAA--TTTGTG-TAATT------T--AAA--TC-T---TTATTTGAT---AATTTGC-AAACCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-----CA-TTTGCAAACCTAGTCA-TAGTAAGT-----------------T-AGTAAACGG-TTGT--T---TGTATTTA-N-TTGT--CCCA-GCCAA-TTAATTTCTATATTTTA----------G-TCTATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTT--T---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 11 111 11 111111 111111111 2222 1111 1111111 1 88888888888888888888888888888888 1 111111 1111111 222222222 111111111 000000000000000000000000000000000000000000000000000000 1111111111
lowQualScore : 66666666 6 33 8 8888 444 8 0 11 3 999999 111111111 2222 7 3 4 666 3 0000 88888 3 0000000 7777 3 3 6666 2 0 33 00000000000000000000000000000000 11 3 0 666666 55 55 4 4444444 4 4 555555555 2 3 3 8 1 2 2 2 9999 666 66 1 888888888 3 66 777777777777777777777777777777777777777777777777777777 777 1 3 7777 555 3 88888 44 0000000000 666 1 8 2 1 1
lowQualScore : ........ . .. . .... ... . . .. . ...... ......... .... . . . ... . .... ..... . ....... .... . . .... . . .. ................................ .. . . ...... .. .. . ....... . . ......... . . . . . . . . .... ... .. . ......... . .. ...................................................... ... . . .... ... . ..... .. .......... ... . . . . .
lowQualScore : 11111111 1 11 0 5555 000 0 7 00 6 222222 333333333 1111 3 6 3 444 6 0000 33333 3 8888888 1111 3 1 5555 4 0 99 33333333333333333333333333333333 66 7 9 999999 99 00 0 2222222 0 0 999999999 5 3 3 4 0 1 4 0 1111 444 11 0 444444444 1 99 111111111111111111111111111111111111111111111111111111 444 0 6 7777 888 3 33333 66 0000000000 444 0 0 5 2 0
consensus : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GT----AT---ATTGG-CTGGGATCAA--TTTGTG-TAATT------TAAA--TC-T---TTATTTGAT---AATTTGC-AAA-CCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-CATTTGCAAACCTAGTCA-T-A---G------------T---A-A----TTAGTAAACGG-TTGT--T---TGTATTTA-NTTGT--CCCA-GCCAA-T-----TA-A-T-T-T-C-T-ATATTTTAG-TCT-ATCGCGTCATTTGTTTGATCTTGGTTTATAACGCCA-AT-AGTTT---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
Reference ( family-1610 ) : GTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGAT-GT----AT---ATTGG-CTGGGATCAA--TTTGTG-TAATT------TAAA--TC-T---TTATTTGAT---AATTTGC-AAA-CCTAGTCATTAGTTG---C-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGCT-CATTTGCAAACCTAGTCA-T-A---G------------T---A-AG---TTAGTAAACGG-TTGT--T---TGTATTTA-NTTGT--CCCA-GCCAA-T-----TA-A-T-T-T-C-T-ATATTTTAG-TCT-ATCGCGTCATTTGTCTGATCTTGGTTTATAACGCCA-AT-AGTTT---TGATCATGATAATAA--ATGACATATTCACTNAA-------CNTTTCGTT--ATATT--TT-------------A-------------GGT-ANTC--------------AGTAACAAAAT--CTGAGCTNCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTGCTNAATAT-AAAGACATTTTNTT
gi|1 : GTGCGTCACCTTTTTG--------ATATTTTT-GTTTGTTTTAGAT-GT----AT---ATTTG-GTGGGATCAA--TTTGTG-TAATT------TAAA--TG-T---TTATTTGAT---AATTTGC-TAA-CCTAG-CATTAGCTG---C-AAAC--CTGT-----G-TAATT-------TACTT----GC-T-TA----TTTTCT-CTCTTGCAAACCTAGTTA-TGA---G------------TTGCATAC---CTAGCAAACGG-TTGT--T---TGTATTTA-GTTGT--CCCA-GCCAA-T-----TA-A-T-----------------G-TCT-ATCATACCATTTGTTTGATCTTGGTTTATAACACCA-AC-AGTTT---TGATCATGATAATAA--ATGCCATATTCACTAAA-------TATTTTGTT--A-AT--------------------------------AAT-ACTT--------------AGTAACAGAAT--ATGGGCTGCGAAATGC-CA----GTAT---TTTTA-T-----TT--CT---T-G----TTTTCTAGC---GCAAAATTGCTGAATATCAAAGACAATTTGTT
gi|10 : GTACACCAATTTTTTCTTAAATATATATTTTTAGTATTTTTTAAA--AT----GT---GTCG---------TAA--TTTGTGCTAATT------TAAAAATC-T---TTATTT-ATCC-ATTTTGC-AAAACCCAGGCATTAGTTG---CAAAAC--CTGT-----GTTAATT-------TACAT----GTATATA----TTAGCG-CACCTGTAAACCTAATCATT-A---GGTTTGCAAACCTT---A-GGCATTTAGTAAACGGATTGT--TTTGTATATTTGCGTTGTCCCCCACGCCAA-A-----TACATT-T-T-C-T-ATATTTTAGATCTAATTGCGT
gi|11 : tTTT-G-TAT-ATCAAGTCATTTGTTTGATCTTGGTTTATTACGTTA-TTTA--TT---TGATCATGATAACAA--ATGACATATTTACCAAA-------ACTTTTGTT--AT-TTCATT-------------G-------------GAT-ATTTCAATGATTATAGCAAGTAACAAAAT--CCGAGCTACGGAATGC-CA----GAAT---TTCTA-C-----TC--ATA--TGG----GTTTCTGGT---GCAAAATTGC
gi|12 : -AATC--------------AGGAACAAAACAACTGAGCTTCGGAATGC-CA----GTAT---TTCTG-TGAGTGTCGGCT---T-AAATTTTTTTTAGCAGAGCAAAATTGCTTAAT
gi|13 : tttttaatactttattgccaaacccgaaaacgtgtcaagtgtccGTACGCCACCTTTTTG--------ATATTTTTAGTG--TTTTAGAT-GTATACAT---ATTGG-CTGGGATCAA--CTTGTG-TAATT------T
gi|14 : atat------TACA--TC-T---TTATTTGAT---CATTTGC-AAA-CAAAGTCATTAGTTG---T-AAAC--CTGT-----G-TAATT-------TACAT----GT-T-TA----TTTGC
gi|15 : gG-TTT-ATTACGTAATTTGTCTGTTC--AATTTCTTGCGTCA-TT-TATTT---C---CATGTTAATAA--ATGACATACTCAC
gi|16 : ttC-CA----GTAT---TTTTA-T-----TC--CT---T-A----TTTTTAAAC---GCAAAATTGCTGAATAT-AAA
gi|17 : TAT---TTTTA-T-----TC--CT---T-A----TTTTTTAGC---GCAAAATGGCTTAATAT-AAA-ACACTTTatctaataattat
gi|18 : TAGTAAACGG-TTGT--T---TGTATTTA-CTTGT--CCCaattat
gi|19 : tgagcagcacacaaGGAATGC-CA----GTAT---TTTTA------------T---T-G----TTTTTTATC---GCAAA
gi|2 : TG-TAATT-------AAACGTC-TACACCATTTAA----AGTC--C-AAA-CCTAGTCATTAGTTG---C-AAAA--CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCT-CATTTACAAACCTAGTCA-T------------------------------TAGTAAGCGG-TTGT--A---TGTAATTA-CTTGT--CCCA-GCCAA-T-----TA-A-T-T-TTC-T-ATATTTTAG-TTT-ATTGCGTCATTCGTCTTATCTTTGTTTATAACGACA-AT-AGTTT---TGATCATGATAATAA--ATGACATATTCGCTTAA-------CCATTTGTT--ATATT--TTATTGCACGTGTCAA-------------GGT-AATC--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-A-----TTTTTAGC---GCAAAATTGCTTAACAT-AAAGATATTTCT
gi|3 : CTTTTTG--------ATATTTT--GTGGTT---AGAT-G-----AT---AT------GTGATCAA--T--GTG-TAAAT------TTAA--TG-G---TTATT-GAT---AAT--GC-TAA-CCTAG-CATTAGC-G---C-AAAC--C-GT-----G-TA--T-------TACTT----GC-T-TA----TT--CT-C-TTTGCAAACC--ATCA-T-GATTG------------C---A-TA---CTAGCAA-CGG-TTGT--T---T--ATTTA-GTTGT--CCCA-GCCCA-A-----TA-A-T-------------------TCT-ATCATACCATTT-TTTGATCTT-GTTTATAACACCA-AC-AG-TT---TGATCA----AATAAATATGCCATA-TCACTAAA-------TATTTGGTA--ATAAT------------------------------------CTT--------------AGTAACAGAAT--ATG-GCTTCGAAA-GG-CA----GTA----ATTTA-T-----T---CT---T-G----TTTCTTAGC---GCAAAA-TGCTGAATTC-CAAGACATTgccaagtaa
gi|4 : caACGCCACCTTTTTG--------ATA----------TTTTTAG-T-GC----TT----TTAG-ATGT-AT--A--TT---G-TAGTT------TAAA--TC-T---TTATTTAAT---------------CCT---------TTG---C-AAAC----------------------------AT----AG-T-CA----TT------AGTTGCAAACGTAGTCA-T------------------------------TAGTAAACGG-TTGT--T---TGTATTTA-GTCGT--CCCT-GCCAA-T-----TT-A-T-T-TTC-T-ATAGTTTAG-TCC-ATGGCGTCATTTGTTTGTTCTCGGT----------------GTTT---TGATCATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--ATATT--TTATCGCACATGTCAA-------------AGT-AATT--------------AGTAACAAAAA--CTGAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTTTAGC---GCAAAATTG
gi|5 : ACGTCATCTTTTTG--------ATATTTTTCGTG-TTTTTAGAT-AT----AT---ATTGG-CTGGGACCAA--TTTGTG-AAACA------TAAA--TC-T---TTATTTGAG---CATTTGC-ATA-CCTAGTCATTAGT-------AAAC----G------G-TTGTT-------TGTAT----TT-C-TATTGTTTTGCTGTATTT
gi|5 : ATTGGCTGGGAC-CAAT--TTGT-----G-AAACA-------TAAAT----CT-T-TA----TTTGAG-CATTTGCATACCTAGTCA-T------------------------------TAGTAAACGG-TTGT--T---TGTATTT----------------CTA-T-----TG-T-T-T-TGC-T-GTATTTTAG-ACT-ATTGCGTCATTTGTTTTAT-TTGGTTTATAAGGCCA-AT-AGTTT---TTGTAATGATAATAA--ATGACATATTCACTTAA-------CCTTTTGTT--ATAGT--TT-------------ATCGCACATGTTAAGGT-AATC--------------AGTAACAAAAA--CTAAGCTTCGGAATGC-CA----GTAT---TTTTA-T-----TC--CT---T-G----TTTTATAGC---GCAAAAtagactattgcgtcatttgttttatttggtttataaggccaatagtttttgtaatgataataaatgacatattcacttaaccttttgttatagtttatcgcacatgttaaggtaatcagtaacaaaaactaagcttcggaatgccagtatttttattccttgttttatagcgcaaaa
gi|6 : acgtcatctttttgatatttttcgtgtttttagatatatCCTTTTTG--------ATACTATTGGT-CTTATAAGAT-GT----AT---TGTGG-CTAAGATCAA--TTTGTG-TAATT------TACA--TA-T---CTATTTGCT---TATTTGC-AAA-CATAGTAAT---TTG---T-AAACGATTGTCCCAGA-TAATTAATTATGTATATGTTGGT-T-TA----TTGCCT-CATTT
gi|6 : AAT--TTGT-----G-TAATT-------TACAT----AT-C-TA----TTTGCT-TATTTGCAAAC------A-T-A---G------------T---A-AT---TT-GTAAACG---------------------ATTGT--CCCA-GATAA-T-----TA-A-T-TAT-G-T-ATATGTTGG-TTT-ATTGCCTCATTTCGATGATCTTGGTGGAT----CTC-AT-AATTTCTTTGATCGTGATGGGTA--ATGAAATGTTCACTAAAACTTTTTTATTTCATTGGATGTT--TC-------------AAT-----------GGTTATTC--------------AGTAGCAAGAT--TCGAGCTATAGAATGC-CA----GGAA---TTCTT-T-----TC--ATAAGG-G----TTTTCTATA---ACAAATTTGCTcgatgatcttggtggatctcataatttctttgatcgtgatgggtaatgaaatgttcactaaaacttttttatttcattggatgtttcaatggttattcagtagcaagattcgagctatagaatgccaggaattcttttcataagggttttctataacaaatttgctg
gi|7 : cctttttgatactattggtcttataagatgtattgtggctaagatcTTTAGAT-GT----AT---ATTGG-CTAGGGTCAA--TTTG----------------------------TATTTGTT---CA-TTGC-AAA-CTTAGTg
gi|7 : aatgttatttgaataaaaaaaaatagattggacaaatgaaaaaaatagtacacactccattatatgctatg-TA----TTTGTT-CATT-GCAAACTTAGTT----------------------------------------C---TTGT--TCT-TGTATTAA-ATTGC--CCCA-GCCAA-TTAAAATA-A-T-T-T-CGT-ATATTTTGC-TTT-ATTGCGT-ATTTGTTTGATCATG----ATAAC----------------TGA------------------CATGTTCACATAA-------TATTTCA----ATATG--CT-------------A---------------T-ATTC--------------AGTAACAAAAT--CTCAGCTACGGAATACGCAAGGGGTATTTATTTTAGT-----TA--TT---T-T----TTTTTTAtcttgttcttgtattaaattgccccagccaattaaaataatttcgtatattttgctttattgcgtatttgtttgatcatgataactgacatgttcacataatatttcaatatgctatattcagtaacaaaatctcagctacggaatacgcaaggggtatttattttagttatttttttttta
gi|8 : aatgttatttgaataaaaaaaaatagattggacaaatgaaaaaaatagtacacactccattatatgctatgtttagatgtatattggctagggtcaatttgGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGT----GTAAGATTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGTAAA--TCTT---TTATTTGATAAAAATTTGCAAAA-CTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCTGCATTTGCAAGCCTAG--A-C-A---A------------T---A-AG---TTA--AATCGGTTTGTTCT---TGTATTTA-CTTGT--CCCA-GCCAAGT-----TA-A-TAT-T-C-TAATATTTTAG-TCT-AT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTTT---TGATCATGA
gi|9 : tGTACGCCACCTTTTTG--------ATATTTTTAGTGCTTTTTAGATGGT----GTAAGATTGGCCTGGAATCAATTTTTGTG-TAATTTACCGGTAAA--TCTT---TTATTTGATAAAAATTTGCAAAA-CTTAGTCATTAGTTG---C-AAA---CTGT-----G-TAATT-------TACAT----GT-T-TA----ATTGCTGCATTTGCAAGCCTAG--A-C-A---A------------T---A-AG---TTA--AATCGGTTTGTTCT---TGTATTTA-CTTGT--CCCA-GCCAAGT-----TA-A-TAT-T-C-TAATATTTTAG-TCT-AT-GTGTCATTTGTCTGATCTTGG-TTATAACGCCACAT-AGTTT---TGATCATGA