lowQualScore : 1111111111111111111111111111111111
lowQualScore : 22 777 2222 2222222222222222222222222222222222 4444444444444444444444 1111 11111 444444444444444 11111 111111 99999999999 1 1
lowQualScore : 6 11 6 000 6 4444 2 2222222222222222222222222222222222 8888888888888888888888 4 1111 2 22222 2 999999999999999 88 33333 5 7 1 222222 00000000000 6 6 7 5
lowQualScore : . .. . ... . .... . .................................. ...................... . .... . ..... . ............... .. ..... . . . ...... ........... . . . .
lowQualScore : 0 00 0 000 0 5555 2 0000000000000000000000000000000000 5555555555555555555555 1 1111 2 99999 0 222222222222222 99 22222 1 4 1 444444 00000000000 0 0 0 0
consensus : NNNNNNNNGAGAAGGAATGGAAAATAGCGGCTGCCAGGAGAAAGGAT-TG------CT---N------C-AGN-ATANCGCAGAATTGT--ATCGG--T-CCNGAAA----ATTTCGN-GTACCACTGTGT-T---ATAAATGCNTACA--GG-----AACGAGAC-C---GTNGAAGTNTGCGCCCC----TACTATATTTGGTCATATTTNTGCTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( gi|3 ) : CAAACACGGAGGAGGCGTGGAGA---GCGGCCGCCATGAGAAAAAAT-TG------CT---C------C-AGC-ATCCCGCAGAATTGT--ACCAG--T-CCTGAAA----ATTTCGT-GTACCATTGTGT-T---ACAAATGCCTTCA--GG-----AATGAGAC-C---GTTGAAGTCTGCGCCCC----TGCTATATTT----------CTATTAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTAC
gi|5 : GAGAAGGAATGGAAAATAGCGGCTG--AGGAGAAAAGATGTG------AT---AAAATGGC-AAA-ATATC--AGAACTGC--ACGTC--T-CCAGAAG----ATTTCGT-GTACCACTGTATATTAAACAAAGA-----A--GC-----AACAAAGCTT---ATTGAAGTTTGTGCTCC----
gi|6 : tgtccctctaatGGCTGCCAAAAGAATGAAT-TGTGAAGCCTTGGC------T-AGG-A---AGCAAAACTGT--AC-AG--TTCCTTCAA----AATTCAA-ATACCACTGTGT-T---ATAAATGAC--CAGGGG-----AATT---C-CCTTGTCGAAGTTTGCGCTCCAGTGTACTATATTaacatggtttatgtcagg
gi|10 : caatatcaaaggaagatgttgataaAAAAAGAAC-TG-------T---G------C-AACTATAGTGCAAAGTTGT------G--T-ACCGAAAGCAGATTTTGT-GTACCATTGCGT-A---ATAAATACATACA--TC-----AACGAAAC-T---GTGGAAGTGTGCGCACC----catggtaa
gi|1 : gtccaaggtcaaagtctgcttgggaaacagcatcggccGAAAGGAT-GT------CA---C------CGAGT-ATCC-G-ATAATTGT--GTCGG--T-CTACAGA----ACCT-GCAGTATCACTGTGT-T---ACCAATCCATACA--TG-----AACGAAAC-T---GTGGAGGTTTGTGCTCC----TTCTAattta
gi|7 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggacagtgctgcagaaagCAGAATTGT--A-CAGAAC-CATCAAA----G-TTCAA-GTACCACTGTGT-T---ATAAATGTTTTTG--AA-----AACGCCAC-C---TTAGAAGTTTGTGCCCC----AGCTTGGATT----------ATACTAGGTAggcggatgttcggcggtaatatatccaattatt
gi|8 : gtccctctacaaaaacagaggcagctattgcagcacggaagaaaaactgtgaagctgtaaaaCAGAATTGTTCATCG-----CCTGACA----CCTTTAA-ATATCACTGTGT-C---ATAAATGAATATA--GA-----AATAAAAC-T---CTGGAAGTGTGTGCTCC----ttta
gi|11 : ccagtcagcaaggaagatgtagacaaagctgctagagctaagaattgtagccaattagccaaacatCAGAATTGT---TCA---T-CC-GAAAAGG-ATTTCAA-ATACCACTGTCT-T---ATAAACG-----A--AGAAGTTAACGGGGT-T---GTTGAAATATGCATCCC----acaacgcgtgatacatgg
gi|13 : tcggaatggatcaaagcttccaaaagaaaaagatgtgagctagtgaga----ATTTTGT-ATACCATTGTTT-G---GTAAATGCCTGGG--GA-----AATG-GAC-
gi|14 : aaatgtactgaagcatccgA--GG-----AATGAGAC-C---GTTGAAGTCTGCGCCCC----TACTATATTTGGTCATATTTCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTACacacacgtttgtgcaccaacaaggattatacatggtaattttaata
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TTGTCCGGCTCCGTCTTCAACGTTGGTAGCTGTGGATCATTGCCCAGATTCCAAAGAAACTTCGAACAAGGCTGCAAAACGAAAACAATGCCATCAGATTGGTTCCAAGGAATGTAAACTTGAATATCACTGTGTTATCAACCCATACGGCAATATAACTTTCGAGGTGTGTGCCAGACCTCGCTTGATTTTTGGTGGTAAATATCACATTTCTT
Unaligned ( gi|4 ): TGAAATCATGTCCTGCAAACGAAACCGAATACAACGATCGGGCTAAAGAAAAAGGATGTCTCTTCATAGGACAAGACTGTACAACTACCGAGGAGTTCCGATATCACTGTGTGCTAAATGGTTTTGGGAATGCTTCATTAGAAGTTTGCGCACCTGTGTGGTTTTTAAATGGTATTCA
Unaligned ( gi|9 ): CCATCAACTGATGAAGAATACAGAGACGCTGCCAGGAGAAAGAACTGCTCAAAATATAGCCATCATTGTAAATCCTTTGAATATCACTGTGTTCTCAATGAGTGGACAACTAATTTGGTGGAAGTGTGCGCTCCCTCAATATTGATACTATGTAA
Unaligned ( gi|12 ): TGTATCATCATGCCCAATGAACAAAATGGACTGGGATAATGCAGCACGGAAAAAGAATTGCTCTGGAGTAGAACAAGACTGTACTGACCCTGCCAAGTTCCAGTATCACTGTC
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA
Alignments
lowQualScore : 2222222222 222222222222 66666666666666666666666666666666666 222222222 1111111111 1111111111111 1111111 111 3333333333
lowQualScore : 4444444444 2 66 111111111111 4 66 4 44444444444444444444444444444444444 777777777 999999999 33 4444444444 8888888888888 1 1 666 3333333 999 000 0 1111111111 4 2
lowQualScore : .......... . .. ............ . .. . ................................... ......... ......... .. .......... ............. . . ... ....... ... ... . .......... . .
lowQualScore : 0000000000 5 11 111111111111 4 11 4 66666666666666666666666666666666666 111111111 888888888 66 9999999999 3333333333333 0 0 444 7777777 666 000 8 0000000000 0 5
consensus : NNNNNNNNGAGGAGGAATGGA--A-AATA--GCG--GC------TGC--CA-GGA--GAAAG-GAT-TG------CT------N---CAGC-GTANNG---CAGAATTGT--A--CCGATCCNGAAA--ANTTCGAGTACCACTGTGTTATAAATGNNTACGGG--AA--CGAGAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTCATATTT-TGCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( family-1581 ) : NNNNNNNNGAGAAGGAATGGA--A-AATA--GCG--GC------TGC--CA-GGA--GAAAG-GAT-TG------CT------N---CAGN-ATANCG---CAGAATTGT--A--TCGGTCCNGAAA--ATTTCGNGTACCACTGTGTTATAAATGCNTACAGG--AA--CGAGAC-C--GTNGAAGTNTGCGCC---CC----T-ACT--ATATT--TGGTCATATTTNTGCTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTAC
gi|1 : --GC------TGC---A-GAAAGGAAAG-GAT--G------TC------A---CCGA-GTATCC---GATAATTGT--G--TCGGTCTACAGA--ACCTGCAGTATCACTGTGTTACCAATCCATACATG--AA--CGAAAC-T--GTGGAGGTTTGTGCT---CC----T-TCT--A
gi|11 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggacagtGGAATGGATCA-AA---------GC------TTC--CA-AAA--GAAAAAGATGTG-------------------AGC--TAGTGAGACAGAATTGT-----TC-ATCCGAAAAGGATTTCAAATACCACTGTCTTATAAA--CGAAGAAGTTAA--CGGGGT-T--GTTGAAATATGCATC---CC----ggcggatgttcggcggtaatatatccaattatt
gi|12 : tcGGACTGGG--ATAAT---GCA--GC-------AC-----GGA--AAAAG-AAT-TG------CT------C---TGGA-GTAGAA---CAAGACTGT--A--CTGACCCTGCCA--AGTTCCAGTATCACTGT
gi|14 : tgtatcatcatgcccaatgaacaaaatAGG--AA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-ACT--ATATT--TGGTCATATTTCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTACc
gi|2 : AA--ACTT-GAATATCACTGTGTTATCAACCCATACGGC--AA--TATAAC-T--TTCGAGGTGTGTGCCAGACC----TCGCTTGATTTT--TGGTa
gi|3 : ttgtccggctccgtcttcaacgttggtagctgtggatcattgcccagattccaaagaaacttcgaacaaggctgcaaaacgaaaacaatgccatcagattggttccaaggaatgtGAGGAGGCGTGGA--G-A-----GCG--GC------CGC--CA-TGA--GAAAA-AAT-TG------CT------C---CAGC-ATCCCG---CAGAATTGT--A--CCAGTCCTGAAA--ATTTCGTGTACCATTGTGTTACAAATGCCTTCAGG--AA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-GCT--ATATT-----TC-TAT------TAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTACggtaaatatcacatttctt
gi|4 : caaacacgG--GC------TA----A-AGA--AAAAG-GAT--G------TC------T---CTTC-ATAGGA---CAAGACTGT--A--CAACTACCGAGG--AGTTCCGATATCACTGTGTGCTAAATGGTTTTGGG--AA--TGCTTC-A--TTAGAAGTTTGCGCA---CC----T-
gi|5 : tgaaatcatgtcctgcaaacgaaaccgaatacaacgatcgGAGAAGGAATGGA--A-AATA--GCG--GC------TG----A-GGA--GAAAA-GATGTG------ATAAAATGG---CAAA-ATAT-----CAGAACTGC--ACGTC--TCCAGAAG--ATTTCGTGTACCACTGTATATTAAACAAAGA-AGC--AA--CAAAGCTT--ATTGAAGTTTGTGCT---CC----A-ACgtgtggtttttaaatggtattca
gi|6 : tgtccctctaatG--GC------TGC--CA-AAA--GAATG-AAT-TGTGAAGCCT------TGGCTAGG-A-A--G---CAAAACTGT--A--CAGTTCCTTCAA--AATTCAAATACCACTGTGTTATAAATGACCAGGGG--AATTC----C-CTTGTCGAAGTTTGCGCT---CCAGTGT-ACT--ATATTCATGGTatggtttatgtcagg
gi|7 : caatatcaaaggaagatgttgataaA--A-AACA--GAG--GCAGCTATTGCAGCACGGA--AGAAA-AAC-TG-------T------G---AAGCTGTAAAA---CAGAATTGT--A--CAGAACCATCAA--AGTTCAAGTACCACTGTGTTATAAATGTTTTTGAA--AA--CGCCAC-C--TTAGAAGTTTGTGCC---CC----A-GC-------T--TGG--A---TTATACTAGGTAaa
gi|8 : gtccctctaca---CAGAATTGTTCA--TCG--CCTGACA--CCTTTAAATATCACTGTGTCATAAATGAATATAGA--AA--TAAAAC-T--CTGGAAGTGTGTGCT---CC----ttta
gi|9 : ccagtcagcaaggaagatgtagacaaagctgctagagctaagaattgtagccaattagccaaacatATGAA--G-AATACAGAGACGC------TGC--CA-GGA--GAAAG-AAC-TG------CT----------CAAA-ATATAGC--CATCATTGT--A----AATCC---------TTTGAATATCACTGTGTTCTCAATGAGT---GGACAA--CTA-AT-TTGGTGGAAGTGTGCGCT---CC----C-TCA--ATATT--acaacgcgtgatacatgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTCCAAGGTCAAAGTCTGCTTGGGAAACAGCATCGGCCAAAAAGAACTGTGCAACTATAGTGCAAAGTTGTGTACCGAAAGCAGATTTTGTGTACCATTGCGTAATAAATACATACATCAACGAAACTGTGGAAGTGTGCGCACCATTTA
Unaligned ( gi|13 ): AAATGTACTGAAGCATCCGATTTTGTATACCATTGTTTGGTAAATGCCTGGGGAAATGGACACACACGTTTGTGCACCAACAAGGATTATACATGGTAATTTTAATA
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA
Alignments
lowQualScore : 1111 111111 55555555555555555555555555555 11111111 1111 111 1 333333
lowQualScore : 99 6666 2 66 222222 8888 555 66 4 22222222222222222222222222222 88888888 7777777 2 11 22 888888 999999 3333 1 1 6666 8888888 999 000 0 5 444444 1 1
lowQualScore : .. .... . .. ...... .... ... .. . ............................. ........ ....... . .. .. ...... ...... .... . . .... ....... ... ... . . ...... . .
lowQualScore : 22 3333 5 11 888888 3333 222 11 4 44444444444444444444444444444 88888888 5555555 3 55 00 888888 000000 9999 0 0 7777 5555555 666 000 8 3 777777 0 0
consensus : NNNNNNNNGAGGAGGAATGGA--AAACA--GCG--GC------TGC--CA-GGA--GAAAG-GAT-TG-TGCA---GC--GT-------ANNG-CAGAATTGT--ACCGNTCCNGAAA--ANTTCGAGTACCACTGTGTTATAAACGNATACGGG-AA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT--TGCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( family-1581 ) : NNNNNNNNGAGGAGGAATGGA--AAATA--GCG--GC------TGC--CA-GGA--GAAAG-GAT-TGCTNCA---GC--GT-------ANNG-CAGAATTGT--ACCGATCCNGAAA--ANTTCGAGTACCACTGTGTTATAAATGNNTACGGG-AA--CGAGAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTCATATTT-TGCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
gi|1 : --GC------TGC---A-GAAAGGAAAG-GAT--GTCACC---GA--GT-------ATCC-GATAATTGT--GTCGGTCTACAGA--ACCTGCAGTATCACTGTGTTACCAATCCATACATG-AA--CGAAAC-T--GTGGAGGTTTGTGCT---CC----T-TCT--A
gi|10 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggacagtTGGG--AAACA--GCA--TC------GGC--CA-A-----AAAG-AAC-TG-TGCA---ACT-AT-------AGTG-CAAAGTTGTGTACCGA--AAGCAG--ATTTTGTGTACCATTGCGTAATAAATACATACATC-AA--CGAAAC-T--GTGGAAGTGTGCGCA---CC----ggcggatgttcggcggtaatatatccaattatt
gi|11 : gtccaaggtcaaagtctgctGGAATGGATCAAA---------GC------TTC--CA-AAA--GAAAAAGATGTG----A---GCTAGT-------GAGA-CAGAATTGT--TC--ATCCGAAAAGGATTTCAAATACCACTGTCTTATAAACGAAGAAGTT-AA--CGGGGT-T--GTTGAAATATGCATC---CC----attta
gi|14 : tcGG-AA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-ACT--ATATT--TGGTCATATTTCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTAC
gi|2 : aAA--ACTT-GAATATCACTGTGTTATCAACCCATACGGC-AA--TATAAC-T--TTCGAGGTGTGTGCCAGACC----TCGCTTGATTTT--TGGTa
gi|3 : ttgtccggctccgtcttcaacgttggtagctgtggatcattgcccagattccaaagaaacttcgaacaaggctgcaaaacgaaaacaatgccatcagattggttccaaggaatgtGAGGAGGCGTGGA--GA-----GCG--GC------CGC--CA-TGA--GAAAA-AAT-TGCTCCA---GC--AT-------CCCG-CAGAATTGT--ACCAGTCCTGAAA--ATTTCGTGTACCATTGTGTTACAAATGCCTTCAGG-AA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-GCT--ATATT-----TC-TAT------TAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTACggtaaatatcacatttctt
gi|4 : caaacacgG--GC------TA----A-AGA--AAAAG-GAT--GTCTCT---TC--AT-------AGGA-CAAGACTGT--ACAACTACCGAGG--AGTTCCGATATCACTGTGTGCTAAATGGTTTTGGG-AA--TGCTTC-A--TTAGAAGTTTGCGCA---CC----T-G
gi|5 : tgaaatcatgtcctgcaaacgaaaccgaatacaacgatcgGAGAAGGAATGGA--AAATA--GCG--GC------TG----A-GGA--GAAAA-GATGTGATAAAATGGC--AA-------AATATCAGAACTGC--ACGTCTCCAGAAG--ATTTCGTGTACCACTGTATATTAAACAAAGA-AGC-AA--CAAAGCTT--ATTGAAGTTTGTGCT---CC----tgtggtttttaaatggtattca
gi|6 : tgtccctctaatG--GC------TGC--CA-AAA--GAATG-AAT-TG-TGAA---GC--CTTGGCTAGGAAG-CAAAACTGT--ACAGTTCCTTCAA--AATTCAAATACCACTGTGTTATAAATGACCAGGGG-AATTC----C-CTTGTCGAAGTTTGCGCT---CCAGTGT-ACT--ATATTCATGGTaacatggtttatgtcagg
gi|7 : caatatcaaaggaagatgttgataaA--AAACA--GAG--GCAGCTATTGCAGCACGGA--AGAAA-AAC-TG-TGAA---GCT-GT-------AAAA-CAGAATTGT--ACAGAACCATCAA--AGTTCAAGTACCACTGTGTTATAAATGTTTTTGAA-AA--CGCCAC-C--TTAGAAGTTTGTGCC---CC----A-GC-------T--TGG----ATTA-TACTAGGTAaa
gi|8 : gtccctctaca-CAGAATTGTTCATCG--CCTGACA--CCTTTAAATATCACTGTGTCATAAATGAATATAGA-AA--TAAAAC-T--CTGGAAGTGTGTGCT---CC----ttta
gi|9 : ccagtcagcaaggaagatgtagacaaagctgctagagctaagaattgtagccaattagccaaacatATGAA--GAATACAGAGACGC------TGC--CA-GGA--GAAAG-AAC-TGCT-CA---AA--AT-------ATAGCCATCATTGT--A--AATCC---------TTTGAATATCACTGTGTTCTCAATGAGT--GGACAA--CTA-AT-TTGGTGGAAGTGTGCGCT---CC----C-TCA--ATATT--acaacgcgtgatacatgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATCATCATGCCCAATGAACAAAATGGACTGGGATAATGCAGCACGGAAAAAGAATTGCTCTGGAGTAGAACAAGACTGTACTGACCCTGCCAAGTTCCAGTATCACTGTC
Unaligned ( gi|13 ): AAATGTACTGAAGCATCCGATTTTGTATACCATTGTTTGGTAAATGCCTGGGGAAATGGACACACACGTTTGTGCACCAACAAGGATTATACATGGTAATTTTAATA
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555555 22222222 111111 1111 1111111 111 1 4444444
lowQualScore : 0 99 3 3 66 222222 666 666666 2 1111111111111111111111111111111111111111 00000000 999 55 2 2 1 1 000000 55 1 2222 1 1 666 2222222 999 000 0 3 5555555 1 1
lowQualScore : . .. . . .. ...... ... ...... . ........................................ ........ ... .. . . . . ...... .. . .... . . ... ....... ... ... . . ....... . .
lowQualScore : 8 22 0 0 11 888888 222 777777 4 7777777777777777777777777777777777777777 00000000 999 55 4 3 2 0 222222 00 2 5555 0 0 444 0000000 666 000 8 3 3333333 0 0
consensus : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAAT---------TG-T-GC-----AGC--GT-------ANCG-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGN-AA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( family-1581 ) : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGGAT---------TG-T-GC-----AGC--GT-------ANNG-CAGAATTGT--ACCGNTCCNGAAA--ANTTCGAGTACCACTGTGTTATAAACGNATACGGG-AA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
gi|1 : ACAGTG---C------TGC---A-GAAAGGAAAGGAT----------G-TCAC-----CGA--GT-------ATCC-GATAATTGT--GTCGGTCTACAGA--ACCTGCAGTATCACTGTGTTACCAATCCATACATG-AA--CGAAAC-T--GTGGAGGTTTGTGCT---CC----T-TCT--A
gi|10 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggTGGG--AAACAGCA--TC------GGC--CA-A-----AAAGAAC---------TG-T-GC-----AACT-AT-------AGTG-CAAAGTTGTGTACCGA--AAGCAG--ATTTTGTGTACCATTGCGTAATAAATACATACATC-AA--CGAAAC-T--GTGGAAGTGTGCGCA---CC----ggcggatgttcggcggtaatatatccaattatt
gi|11 : gtccaaggtcaaagtctgctGGAATGGATCAAA-------GC------TTC--CA-AAA--GAAAAAGA---------TG-T-G------AGCTAGT-------GAGA-CAGAATTGT--TC--ATCCGAAAAGGATTTCAAATACCACTGTCTTATAAACGAAGAAGTT-AA--CGGGGT-T--GTTGAAATATGCATC---CC----attta
gi|14 : tcGG-AA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-ACT--ATATT--TGGTCATATT-TCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTAC
gi|2 : aAA--ACTT-GAATATCACTGTGTTATCAACCCATACGGC-AA--TATAAC-T--TTCGAGGTGTGTGCCAGACC----TCGCTTGATTTT--TGGTa
gi|3 : ttgtccggctccgtcttcaacgttggtagctgtggatcattgcccagattccaaagaaacttcgaacaaggctgcaaaacgaaaacaatgccatcagattggttccaaggaatgtGAGGAGGCGTGGA--GA---GCG--GC------CGC--CA-TGA--GAAAAAAT---------TGCT-CC-----AGC--AT-------CCCG-CAGAATTGT--ACCAGTCCTGAAA--ATTTCGTGTACCATTGTGTTACAAATGCCTTCAGG-AA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-GCT--ATATT-----TC-TAT-------TAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTACggtaaatatcacatttctt
gi|5 : caaacacgGAGAAGGAATGGA--AAATAGCG--GC------TG----A-GGA--GAAAAGATGTGATAAAATG---GC-----AAA--AT-------AT---CAGAACTGC--ACGTCTCCAGAAG--ATTTCGTGTACCACTGTATATTAAACAAAGA-AGC-AA--CAAAGCTT--ATTGAAGTTTGTGCT---CC----
gi|6 : tgtccctctaatG--GC------TGC--CA-AAA--GAATGAAT---------TG-T-GA-----AGC--CTTGGCTAGGAAG-CAAAACTGT--ACAGTTCCTTCAA--AATTCAAATACCACTGTGTTATAAATGACCAGGGG-AATTC----C-CTTGTCGAAGTTTGCGCT---CCAGTGT-ACT--ATATTCATGGTaacatggtttatgtcagg
gi|7 : caatatcaaaggaagatgttgataaA--AAACAGAG--GCAGCTATTGCAGCACGGA--AGAAAAAC---------TG-T-GA-----AGCT-GT-------AAAA-CAGAATTGT--ACAGAACCATCAA--AGTTCAAGTACCACTGTGTTATAAATGTTTTTGAA-AA--CGCCAC-C--TTAGAAGTTTGTGCC---CC----A-GC-------T--TGG----ATTAT--ACTAGGTAaa
gi|8 : gtccctctaca--GC------TGC--TA-GAG--CTAAGAAT---------TG-TAGCCAATTAGC--CA-------AACATCAGAATTGTTCATCG--CCTGACA--CCTTTAAATATCACTGTGTCATAAATGAATATAGA-AA--TAAAAC-T--CTGGAAGTGTGTGCT---CC----ttta
gi|9 : ccagtcagcaaggaagatgtagacaaaGATGAA--GA--ATACAGAGACGC------TGC--CA-GGA--GAAAGAAC---------TG-C-TC-----AAA--AT-------ATAGCCATCATTGT--A--AATCC---------TTTGAATATCACTGTGTTCTCAATGAGT--GGACAA--CTAATT-TG-GTGGAAGTGTGCGCT---CC----C-TCA--ATATT--acaacgcgtgatacatgg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TGAAATCATGTCCTGCAAACGAAACCGAATACAACGATCGGGCTAAAGAAAAAGGATGTCTCTTCATAGGACAAGACTGTACAACTACCGAGGAGTTCCGATATCACTGTGTGCTAAATGGTTTTGGGAATGCTTCATTAGAAGTTTGCGCACCTGTGTGGTTTTTAAATGGTATTCA
Unaligned ( gi|12 ): TGTATCATCATGCCCAATGAACAAAATGGACTGGGATAATGCAGCACGGAAAAAGAATTGCTCTGGAGTAGAACAAGACTGTACTGACCCTGCCAAGTTCCAGTATCACTGTC
Unaligned ( gi|13 ): AAATGTACTGAAGCATCCGATTTTGTATACCATTGTTTGGTAAATGCCTGGGGAAATGGACACACACGTTTGTGCACCAACAAGGATTATACATGGTAATTTTAATA
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA
Alignments
lowQualScore : 111111 66666666666666666666666666666666666 11111111 1111 1111111 111 1 4444444
lowQualScore : 0 99 3 3 66 222222 666 4 1 55 3 4 44444444444444444444444444444444444 55555555 777 55 2 11 1 1 8 1 55 1 2222 1 1 666 2222222 999 000 0 3 5555555 1 1
lowQualScore : . .. . . .. ...... ... . . .. . . ................................... ........ ... .. . .. . . . . .. . .... . . ... ....... ... ... . . ....... . .
lowQualScore : 8 22 0 0 11 888888 222 0 4 55 0 0 22222222222222222222222222222222222 44444444 000 00 6 55 2 0 2 0 00 2 5555 0 0 444 0000000 666 000 8 3 3333333 0 0
consensus : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( family-1581 ) : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
gi|1 : ACAGTG---C------TGC---A-GAAAGGAAAGGAT-G-TC--------AC-----CGA--GT-ATC------C-GATAATTGT--GTCGGTCTACAGA--ACCTGCAGTATCACTGTGTTACCAATCCATACATGAA--CGAAAC-T--GTGGAGGTTTGTGCT---CC----T-TCT--A
gi|10 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggTGGG--AAACAGCA--TC------GGC--CA-A-----AAAGAACTG-T---------GC-----AACT-AT-AGT------G-CAAAGTTGTGTACCGA--AAGCAG--ATTTTGTGTACCATTGCGTAATAAATACATACATCAA--CGAAAC-T--GTGGAAGTGTGCGCA---CC----ggcggatgttcggcggtaatatatccaattatt
gi|11 : gtccaaggtcaaagtctgctGGAATGGATCAAA-------GC------TTC--CA-AAA--GAAAAAGATG-T---------G------AGCTAGT-GAG------A-CAGAATTGT--TC--ATCCGAAAAGGATTTCAAATACCACTGTCTTATAAACGAAGAAGTTAA--CGGGGT-T--GTTGAAATATGCATC---CC----attta
gi|12 : tc-GGA--AAAAGAATTG-C---------TCT----GGA--GT-AGA------A-CAAGACTGT--ACTGACCCTGCCA--AGTTCCAGTATCACTGT
gi|14 : tgtatcatcatgcccaatgaacaaaatggactgggataatgcagcacGGAA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-ACT--ATATT--TGGTCATATT-TCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTACc
gi|2 : aAA--ACTT-GAATATCACTGTGTTATCAACCCATACGGCAA--TATAAC-T--TTCGAGGTGTGTGCCAGACC----TCGCTTGATTTT--TGGTa
gi|3 : ttgtccggctccgtcttcaacgttggtagctgtggatcattgcccagattccaaagaaacttcgaacaaggctgcaaaacgaaaacaatgccatcagattggttccaaggaatgtGAGGAGGCGTGGA--GA---GCG--GC------CGC--CA-TGA--GAAAAAATTGCT---------CC-----AGC--AT-CCC------G-CAGAATTGT--ACCAGTCCTGAAA--ATTTCGTGTACCATTGTGTTACAAATGCCTTCAGGAA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-GCT--ATATT-----TC-TAT-------TAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTACggtaaatatcacatttctt
gi|5 : caaacacgGAGAAGGAATGGA--AAATAGCG--GC------TG----A-GGA--GAAAAGA-TG-TGATAAAATGGC-----AAA--AT-AT---------CAGAACTGC--ACGTCTCCAGAAG--ATTTCGTGTACCACTGTATATTAAACAAAGA-AGCAA--CAAAGCTT--ATTGAAGTTTGTGCT---CC----
gi|6 : tgtccctctaatG--GC------TGC--CA-AAA--GAATGAATTG-T---------GA-----AGC--CTTGGCTAGGAAG-CAAAACTGT--ACAGTTCCTTCAA--AATTCAAATACCACTGTGTTATAAATGACCAGGGGAATTC----C-CTTGTCGAAGTTTGCGCT---CCAGTGT-ACT--ATATTCATGGTaacatggtttatgtcagg
gi|7 : caatatcaaaggaagatgttgataaA--AAACAGAG--GCAGCTATTGCAGCACGGA--AGAAAAACTG-T---------GA-----AGCT-GT-AAA------A-CAGAATTGT--ACAGAACCATCAA--AGTTCAAGTACCACTGTGTTATAAATGTTTTTGAAAA--CGCCAC-C--TTAGAAGTTTGTGCC---CC----A-GC-------T--TGG----ATTAT--ACTAGGTAaa
gi|8 : gtccctctaca--GC------TGC--TA-GAG--CTAAGAATTG-TA--------GCCAATTAGC--CA-AAC------ATCAGAATTGTTCATCG--CCTGACA--CCTTTAAATATCACTGTGTCATAAATGAATATAGAAA--TAAAAC-T--CTGGAAGTGTGTGCT---CC----ttta
gi|9 : ccagtcagcaaggaagatgtagacaaaGATGAA--GA--ATACAGAGACGC------TGC--CA-GGA--GAAAGAACTG-C---------TC-----AAA--AT-ATA------GCCATCATTGT--A--AATC---------CTTTGAATATCACTGTGTTCTCAATGAGTG-GACAA--CTAATT-TG-GTGGAAGTGTGCGCT---CC----C-TCA--ATATT--acaacgcgtgatacatgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TGAAATCATGTCCTGCAAACGAAACCGAATACAACGATCGGGCTAAAGAAAAAGGATGTCTCTTCATAGGACAAGACTGTACAACTACCGAGGAGTTCCGATATCACTGTGTGCTAAATGGTTTTGGGAATGCTTCATTAGAAGTTTGCGCACCTGTGTGGTTTTTAAATGGTATTCA
Unaligned ( gi|13 ): AAATGTACTGAAGCATCCGATTTTGTATACCATTGTTTGGTAAATGCCTGGGGAAATGGACACACACGTTTGTGCACCAACAAGGATTATACATGGTAATTTTAATA
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA
Alignments
lowQualScore : 111111 66666666666666666666666666666666666 11111111 1111 1111111 111 1 4444444
lowQualScore : 0 99 3 3 66 222222 666 4 1 55 3 4 44444444444444444444444444444444444 55555555 777 55 2 11 1 1 8 1 55 1 2222 1 1 666 2222222 999 000 0 3 5555555 1 1
lowQualScore : . .. . . .. ...... ... . . .. . . ................................... ........ ... .. . .. . . . . .. . .... . . ... ....... ... ... . . ....... . .
lowQualScore : 8 22 0 0 11 888888 222 0 4 55 0 0 22222222222222222222222222222222222 44444444 000 00 6 55 2 0 2 0 00 2 5555 0 0 444 0000000 666 000 8 3 3333333 0 0
consensus : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( family-1581 ) : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
gi|1 : ACAGTG---C------TGC---A-GAAAGGAAAGGAT-G-TC--------AC-----CGA--GT-ATC------C-GATAATTGT--GTCGGTCTACAGA--ACCTGCAGTATCACTGTGTTACCAATCCATACATGAA--CGAAAC-T--GTGGAGGTTTGTGCT---CC----T-TCT--A
gi|10 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggTGGG--AAACAGCA--TC------GGC--CA-A-----AAAGAACTG-T---------GC-----AACT-AT-AGT------G-CAAAGTTGTGTACCGA--AAGCAG--ATTTTGTGTACCATTGCGTAATAAATACATACATCAA--CGAAAC-T--GTGGAAGTGTGCGCA---CC----ggcggatgttcggcggtaatatatccaattatt
gi|11 : gtccaaggtcaaagtctgctGGAATGGATCAAA-------GC------TTC--CA-AAA--GAAAAAGATG-T---------G------AGCTAGT-GAG------A-CAGAATTGT--TC--ATCCGAAAAGGATTTCAAATACCACTGTCTTATAAACGAAGAAGTTAA--CGGGGT-T--GTTGAAATATGCATC---CC----attta
gi|12 : tc-GGA--AAAAGAATTG-C---------TCT----GGA--GT-AGA------A-CAAGACTGT--ACTGACCCTGCCA--AGTTCCAGTATCACTGT
gi|14 : tgtatcatcatgcccaatgaacaaaatggactgggataatgcagcacGGAA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-ACT--ATATT--TGGTCATATT-TCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTACc
gi|2 : aAA--ACTT-GAATATCACTGTGTTATCAACCCATACGGCAA--TATAAC-T--TTCGAGGTGTGTGCCAGACC----TCGCTTGATTTT--TGGTa
gi|3 : ttgtccggctccgtcttcaacgttggtagctgtggatcattgcccagattccaaagaaacttcgaacaaggctgcaaaacgaaaacaatgccatcagattggttccaaggaatgtGAGGAGGCGTGGA--GA---GCG--GC------CGC--CA-TGA--GAAAAAATTGCT---------CC-----AGC--AT-CCC------G-CAGAATTGT--ACCAGTCCTGAAA--ATTTCGTGTACCATTGTGTTACAAATGCCTTCAGGAA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-GCT--ATATT-----TC-TAT-------TAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTACggtaaatatcacatttctt
gi|5 : caaacacgGAGAAGGAATGGA--AAATAGCG--GC------TG----A-GGA--GAAAAGA-TG-TGATAAAATGGC-----AAA--AT-AT---------CAGAACTGC--ACGTCTCCAGAAG--ATTTCGTGTACCACTGTATATTAAACAAAGA-AGCAA--CAAAGCTT--ATTGAAGTTTGTGCT---CC----
gi|6 : tgtccctctaatG--GC------TGC--CA-AAA--GAATGAATTG-T---------GA-----AGC--CTTGGCTAGGAAG-CAAAACTGT--ACAGTTCCTTCAA--AATTCAAATACCACTGTGTTATAAATGACCAGGGGAATTC----C-CTTGTCGAAGTTTGCGCT---CCAGTGT-ACT--ATATTCATGGTaacatggtttatgtcagg
gi|7 : caatatcaaaggaagatgttgataaA--AAACAGAG--GCAGCTATTGCAGCACGGA--AGAAAAACTG-T---------GA-----AGCT-GT-AAA------A-CAGAATTGT--ACAGAACCATCAA--AGTTCAAGTACCACTGTGTTATAAATGTTTTTGAAAA--CGCCAC-C--TTAGAAGTTTGTGCC---CC----A-GC-------T--TGG----ATTAT--ACTAGGTAaa
gi|8 : gtccctctaca--GC------TGC--TA-GAG--CTAAGAATTG-TA--------GCCAATTAGC--CA-AAC------ATCAGAATTGTTCATCG--CCTGACA--CCTTTAAATATCACTGTGTCATAAATGAATATAGAAA--TAAAAC-T--CTGGAAGTGTGTGCT---CC----ttta
gi|9 : ccagtcagcaaggaagatgtagacaaaGATGAA--GA--ATACAGAGACGC------TGC--CA-GGA--GAAAGAACTG-C---------TC-----AAA--AT-ATA------GCCATCATTGT--A--AATC---------CTTTGAATATCACTGTGTTCTCAATGAGTG-GACAA--CTAATT-TG-GTGGAAGTGTGCGCT---CC----C-TCA--ATATT--acaacgcgtgatacatgg
blockSeqs : TC C C AC AGCTAT AGC C A . C C GATAAAATGGCAAAATAT GTACCGA AGC GG T TG T C C C TT G CTT G G AGA AGTGTA TTG CAT . TATAC A T
blockSeqs : . T C . . C . G . A . GAAGCCTTGGCTAGGAAG ACTGAC GAA . T CA C A A T . G TT T A . TCG T T . .
blockSeqs : . C C . . C . G . T . AGCCAATTAGCCAAACAT ACCAGT TGC . G CC C C C G . G TG T C . TA T T
blockSeqs : . C A . . C . G . T . GCAACTATAGTG ACGTCT TGA . C CG T C C C . A T C G . TG T .
blockSeqs : . . A . . C . A . T . GAGCTAGTGAGA ACAGTT AGA . T CG C A G G . G T T C . AG A
blockSeqs : . . . . T . G . C . TCTGGAGTAGAA ACAGAA TTC . T CA T A T C . A C T T . CT .
blockSeqs : . . C . A . T . GAAGCTGTAAAA TCATCG ATC . A CA T T T G . G T C T .
blockSeqs : . . . . G . C . TCAAAATATAGC TCAT TGA . G TA T A . A . A C A T .
blockSeqs : . . . . . CCAGCATCCCG AAAT . . C TG T A . A . T C G G .
blockSeqs : . C G C . . T G G .
blockSeqCons : C** **
originalCons : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
finalCons : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGCC--A-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TGAAATCATGTCCTGCAAACGAAACCGAATACAACGATCGGGCTAAAGAAAAAGGATGTCTCTTCATAGGACAAGACTGTACAACTACCGAGGAGTTCCGATATCACTGTGTGCTAAATGGTTTTGGGAATGCTTCATTAGAAGTTTGCGCACCTGTGTGGTTTTTAAATGGTATTCA
Unaligned ( gi|13 ): AAATGTACTGAAGCATCCGATTTTGTATACCATTGTTTGGTAAATGCCTGGGGAAATGGACACACACGTTTGTGCACCAACAAGGATTATACATGGTAATTTTAATA
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA
Alignments
lowQualScore : 111111 66666666666666666666666666666666666 11111111 1111 1111111 111 1 4444444
lowQualScore : 0 99 3 3 66 222222 666 4 1 55 3 4 44444444444444444444444444444444444 55555555 777 55 2 11 1 1 8 1 55 1 2222 1 1 666 2222222 999 000 0 3 5555555 1 1
lowQualScore : . .. . . .. ...... ... . . .. . . ................................... ........ ... .. . .. . . . . .. . .... . . ... ....... ... ... . . ....... . .
lowQualScore : 8 22 0 0 11 888888 222 0 4 55 0 0 22222222222222222222222222222222222 44444444 000 00 6 55 2 0 2 0 00 2 5555 0 0 444 0000000 666 000 8 3 3333333 0 0
consensus : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
Reference ( family-1581 ) : NNNNNNNNGAGGAGGAATGGA--AAACAGCG--GC------TGC--CA-GGA--GAAAGAATTG-T---------GC-----AGC--GT-ANC------G-CAGAATTGT--ACCGATCCNGAAA--ACTTCGAGTACCACTGTGTTATAAACGNATACGGNAA--CGAAAC-C--GTNGAAGTNTGCGCC---CC----T-GCT--ATATT--TGGTC-TATT-T--GCTAGGTAGGTCATGNTTTTTGTGNAGTTCATTCGATTGAAAGCTAAATATTAC
gi|1 : ACAGTG---C------TGC---A-GAAAGGAAAGGAT-G-TC--------AC-----CGA--GT-ATC------C-GATAATTGT--GTCGGTCTACAGA--ACCTGCAGTATCACTGTGTTACCAATCCATACATGAA--CGAAAC-T--GTGGAGGTTTGTGCT---CC----T-TCT--A
gi|10 : ttgtctggatccaacctcaacgatgaagtatgtcgaaaattgtccagattcaaagtcttcgtgggTGGG--AAACAGCA--TC------GGC--CA-A-----AAAGAACTG-T---------GC-----AACT-AT-AGT------G-CAAAGTTGTGTACCGA--AAGCAG--ATTTTGTGTACCATTGCGTAATAAATACATACATCAA--CGAAAC-T--GTGGAAGTGTGCGCA---CC----ggcggatgttcggcggtaatatatccaattatt
gi|11 : gtccaaggtcaaagtctgctGGAATGGATCAAA-------GC------TTC--CA-AAA--GAAAAAGATG-T---------G------AGCTAGT-GAG------A-CAGAATTGT--TC--ATCCGAAAAGGATTTCAAATACCACTGTCTTATAAACGAAGAAGTTAA--CGGGGT-T--GTTGAAATATGCATC---CC----attta
gi|12 : tc-GGA--AAAAGAATTG-C---------TCT----GGA--GT-AGA------A-CAAGACTGT--ACTGACCCTGCCA--AGTTCCAGTATCACTGT
gi|14 : tgtatcatcatgcccaatgaacaaaatggactgggataatgcagcacGGAA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-ACT--ATATT--TGGTCATATT-TCTGTTAGGTAAGTCATGTTTTTTGTGGAGTTCATTCGATTGAAAGCTAAATATTACc
gi|2 : aAA--ACTT-GAATATCACTGTGTTATCAACCCATACGGCAA--TATAAC-T--TTCGAGGTGTGTGCCAGACC----TCGCTTGATTTT--TGGTa
gi|3 : ttgtccggctccgtcttcaacgttggtagctgtggatcattgcccagattccaaagaaacttcgaacaaggctgcaaaacgaaaacaatgccatcagattggttccaaggaatgtGAGGAGGCGTGGA--GA---GCG--GC------CGC--CA-TGA--GAAAAAATTGCT---------CC-----AGC--AT-CCC------G-CAGAATTGT--ACCAGTCCTGAAA--ATTTCGTGTACCATTGTGTTACAAATGCCTTCAGGAA--TGAGAC-C--GTTGAAGTCTGCGCC---CC----T-GCT--ATATT-----TC-TAT-------TAGGTAGGTTATGATTTTTGTGTAGTTCATTCGATTGAAAGCTAAATATTACggtaaatatcacatttctt
gi|5 : caaacacgGAGAAGGAATGGA--AAATAGCG--GC------TG----A-GGA--GAAAAGA-TG-TGATAAAATGGC-----AAA--AT-AT---------CAGAACTGC--ACGTCTCCAGAAG--ATTTCGTGTACCACTGTATATTAAACAAAGA-AGCAA--CAAAGCTT--ATTGAAGTTTGTGCT---CC----
gi|6 : tgtccctctaatG--GC------TGC--CA-AAA--GAATGAATTG-T---------GA-----AGC--CTTGGCTAGGAAG-CAAAACTGT--ACAGTTCCTTCAA--AATTCAAATACCACTGTGTTATAAATGACCAGGGGAATTC----C-CTTGTCGAAGTTTGCGCT---CCAGTGT-ACT--ATATTCATGGTaacatggtttatgtcagg
gi|7 : caatatcaaaggaagatgttgataaA--AAACAGAG--GCAGCTATTGCAGCACGGA--AGAAAAACTG-T---------GA-----AGCT-GT-AAA------A-CAGAATTGT--ACAGAACCATCAA--AGTTCAAGTACCACTGTGTTATAAATGTTTTTGAAAA--CGCCAC-C--TTAGAAGTTTGTGCC---CC----A-GC-------T--TGG----ATTAT--ACTAGGTAaa
gi|8 : gtccctctaca--GC------TGC--TA-GAG--CTAAGAATTG-TA--------GCCAATTAGC--CA-AAC------ATCAGAATTGTTCATCG--CCTGACA--CCTTTAAATATCACTGTGTCATAAATGAATATAGAAA--TAAAAC-T--CTGGAAGTGTGTGCT---CC----ttta
gi|9 : ccagtcagcaaggaagatgtagacaaaGATGAA--GA--ATACAGAGACGC------TGC--CA-GGA--GAAAGAACTG-C---------TC-----AAA--AT-ATA------GCCATCATTGT--A--AATC---------CTTTGAATATCACTGTGTTCTCAATGAGTG-GACAA--CTAATT-TG-GTGGAAGTGTGCGCT---CC----C-TCA--ATATT--acaacgcgtgatacatgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TGAAATCATGTCCTGCAAACGAAACCGAATACAACGATCGGGCTAAAGAAAAAGGATGTCTCTTCATAGGACAAGACTGTACAACTACCGAGGAGTTCCGATATCACTGTGTGCTAAATGGTTTTGGGAATGCTTCATTAGAAGTTTGCGCACCTGTGTGGTTTTTAAATGGTATTCA
Unaligned ( gi|13 ): AAATGTACTGAAGCATCCGATTTTGTATACCATTGTTTGGTAAATGCCTGGGGAAATGGACACACACGTTTGTGCACCAACAAGGATTATACATGGTAATTTTAATA
Unaligned ( gi|15 ): CTTTGAATATCATTGTTTGATCAATCAGTGGGCAAACGCAACGTTGGAAGTATGTGCGCCTCAACGTCAAATCATTGGTAAGA
Unaligned ( gi|16 ): ATAACATGGGTTTCGGAGACATTCATTTACAATCTGAA