lowQualScore : 11111 1111 11 11 11 1111 11 33333 22 22 111111111 11 111 5555555555555555555555 11111 111 111 1111 1111 55555555555555555555555555 111 111111
lowQualScore : 88888 2222 5 5 00 66 11 0 77 5 55 4 1 77 1 6 6 5 2222 0 11 66666 8 1 99 55 55 0 8 1 444444444 22 444 9999999999999999999999 66666 111 111 5555 5555 66 3 4 888888 5555 33 33 777777 2 2 2 2 88888888888888888888888888 33 555 2 6666 555 3 222222 2 2 33 3 3 3 99
lowQualScore : ..... .... . . .. .. .. . .. . .. . . .. . . . . .... . .. ..... . . .. .. .. . . . ......... .. ... ...................... ..... ... ... .... .... .. . . ...... .... .. .. ...... . . . . .......................... .. ... . .... ... . ...... . . .. . . . ..
lowQualScore : 22222 1111 0 0 66 99 99 1 99 7 77 3 6 44 0 7 0 7 1111 8 00 00000 0 0 00 00 00 8 0 0 222222222 88 000 4444444444444444444444 77777 777 777 6666 2222 66 1 4 666666 7777 77 77 777777 7 7 7 9 88888888888888888888888888 99 000 1 5555 444 1 111111 9 9 55 1 1 1 55
consensus : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTCGGC-TGG--CATTTTTAAAGCC--GTGTATATG--A-T--GGAAT-ATTTTAGTGA-CTCTTAAA-CA----CCATCCTTTCCTAGT--TTTAGTCT----A-TGAAAATGTGCCAATTAAGATA-GTTGTGAT-ATGACATTG-TGTGT--GTGTTTATACAATGT---ATTA----CGGCT-TTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTAAAA-TATT-TAGATAC-CAATTTTA--C-T-GCAAA----TT--GTGTG--TG------TCTTATG-C-TATGCT-GTTT-TT------------C-------------A--TCA---TGTAGTAATAT----TT--AC-ATAC------T-AA-TCTTAGATG-CT-AATT-T-TATGGCTG--TATATATGTTTTA
Reference ( gi|3 ) : ACTATCACAAAA--CG-TTAG----AAACT-CTGG-TTCGGG-TGG--CATTTTTAAAGCC--GTGTATATG--A-T--GGAAT-ATTTTAGTGA-CTCTTAAA-CA----CCATCCTTTCCTAGT--TTTAGTC-----A-TGAAAACATGCCAATTAAGATA-TTTGTGAT-TTGACATTG-TGTGT--GTGTTTGTACAATGT---ATTA----C-GCT-TTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTAAAG-TATT-TAGATAC-CAATTTCA--T-T-GCAAA----TT--GTGTG--TG------TCTTATG-C-TATGCT-GTTT-TT------------C-------------A--TCA---TGTAGTAATAT----TG--AC-ATAC------T-AA-TCTTAGATA-CT-AATT-T-TATGGCTG--TATATATGTTTTA
gi|6 : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTCGGC-TGG--CAT----------------ATATG--A-TATGGAAT-ATTTTAGTGA-CTCTTAAAACA----CCATGCTTTCCTAGT--TTTAGTCT----A-TGAAAATGTGCCAATTAAGATA-GTTGTGAT-ATGACATTG-T--GT--GTGTCTATAC-ATGT---ATT
gi|4 : aaattacaaacggtcatatagttactcatcttcatttctttggaacaaACTGTCACAAAA--TG-TTCG----AAATT-C-GA-TTCGGGCTGA--CATTTTTAAAGCCT-GTG-ATCTG--ATT--GTAATAATTTTAAT
gi|18 : aaattataaacgttcatatagctactatctgtaatttctttataacaaCTGTCACGAAA--TA-TTCG----AAATT-CTGG-TTCGGC-TAG--CATTCTCAAACCT--GTGTATATG--A-T--GCAAT-ATTTTAGTAA------AAA-CA----catttaatagaagtaggacttaaactgcgctttcctgtttagatcaggtgcattgatagtgtgcccaacgttatatggacactgtcatatgttgtatg
gi|2 : ttctcattaatcctatatattTATCACAAGAATTGATTAAGATTAAACTTCTGGATTCAAG-CAGTCCCTTTTTAAAGCC--GTGTATATGATA-T--GGAAT-ATTTTAGTGATCGCTTTAA-CAGCCGCCATCCTTTCC-AGTTCTTTAGTTTATCAA-TAAATGTATGGCAATTAAGATAGGTTGTGATAATGACATTGTTATGTTGGT-TTTATACCACGT---GTTT----TGGCT-TTTATTTTGTTTTT-----TTC---TTTA---TAT-TCATGC---CATTTGTAGATATT-TAGATACGCAATTTTA--T-TGGCAAA----TT--GTGTG--TG------TCTTGTG-CATA-ACTAGTTT-TT------------C-------------A--TCA---TGTAactctt
gi|1 : aaaattacaaacggtccaatagttactatttactcatccttctctcgcatcgctacttccgcatttctttggaaaaacaATCACAAAA--TG-TTAC----AAACT-CTGG-TTCGGC-TTG--CATTTTTAACGCCGTGTGTATATA--A-TCCTGACT-ATTTTAGGTA-CTCTT-AA-CA----CCATCCTGT-TTAGT--TTTAATCA----A-TGACAGTGTGCCAATTAAGATA-GTTATGAT-ATGAGATTG-TGTGT-----TTT-TACAt
gi|25 : ttttaataactcgaaatatcaggatctctggtaatttttttattttcttgtttgaactggatgtcagttaaggattattttatgtttagaaaagttgtctttttgttcaaagttttaaataatcaaatgccaaatatctaaacgtgtttcaatatatgcaaggggtgtcaattgtcgtcaaatcaggtcaaatgattatatgtcaaatttattgtatttaccatggactgaaactgaaaattacacacgatcatatagtttctcatccgcatttcAG----AAACT-CTGG-TTCGGC-TGG--CATTTTTGAAGCC--GTGTATATG--A-T--G---T--TTTT------CTCTTATA-TA----TCAT
gi|31 : AG----AAACT-CTGG-TTCGGG-TG----ATTTTTAAAACC--GTGT
gi|17 : ACT-CTGG-TTCGGC-TGG--CATTTTTAAAGCC--GTGTATATG--A-T--GGATT-TTTTTAGTGA-CTCTTGAA-CA----ACATCCTTTCTTAGT--TTTAGTC-----ATTGATAATGTACCAATTGAGtgactactacgatgtaa
gi|30 : AA-CA----CCATCCTTTCCTAGT--TTTAGTC-----A-ATAAAATGTGCCAATTAAGATA-GTTGTG
gi|9 : TTGTGAT-ATGACATTG-TGTGT--GT--TTGTACA-TGT---ATTA----C-GCT----A-TTT---TTT-----TCT---CTTA---TATATCATG----CATTTAAAA-TATT-CAGATAC-CAGTTTTA--T-T-GCAAA----TT--GTGTG--TG------TCTCATG-C-TATGCT-G-TG-TT------------C-------------A--TCA---TGTAGTAATAT----TT--AC-ATATAA----T-AA-TCTTA-ATA-CTAAATT-T-TATAGCTG--TATGTATGTTT
gi|5 : GTGAT-ATGACAT----GTGT--GTGTACATACACTAT---ATAAAAAACAGGT-TTT--------TTT-----TCTAAACTTAATCTATATAATG----TTATTAA---TATT-AAGATAC-TAATTCTA--T---ACTTA----TT--TGGTG--TGACGTATTCTTATG-C-TAT-CT-CTTT-TT------------TTATTTTCCTTATAA--TCAGTATGTAGTCATAT----TT--AC-ATAC------T-AATTTTTAGATG-CT-AATT-TATAT-GCTG--TA
gi|7 : aGTGT--GTGTT-GTA--ATATGAAACTG----C-GCGAGTTA-C--GTTTTTGTCCATCT---CTT----TGTATCATT----TATTCA----TATT-TAGAAAC-TAATCATA--T-T-ACTAA----TT--ATGTG--TG------TCTTATG-C-TATTCC-TCCC-TT------------T-------------ATCTCA---TGTAGTCATAT----TT--AC-ATTC------T-AA-GTGTAG-----T-GATT-T-TATGATTG--TGTATACGTTTTA
gi|13 : gtttggtagataacTTGTTTTT-----TCT---CTTA---TATATCATGATTGTATTTAAAAATATT-TAAATAC-CAATTTTA--C-T-GCGAA----TC--GTGTG--TG------TCTTATG-T-TATGCT-GTTT-TT------------C-------------A--TCA---TGTAGTAATAT----TT--AC-ATAC------T-AA-TCTTAGA----T-AATT-T-TATGGCT---TATa
gi|10 : TTT-----TCT---CTTA---TATATCATA----CATTTAAAA-TATT-TAGATTC-CAATTGTA--T-A-GCAAA----TT--GTGTGTTTG------TCTTATG-C-TATGCT-GCTT-TT------------C-------------A--TCA---TGAAG-AATAG----CGCTACGATAC------T-AT-CCTTAGATAGCT-AATT-T-TATGGTTGC-TGT-TATGTT
gi|27 : ATCATG----CATTTAAAA-TATT----------------A--T-T-GCAAA----TT--GTGTG--TG------TCTTTTG-C-TATTCT-GTTT-Tatgttgtatataggcagagacacaatgg
gi|26 : tgcTCATA----TATTTAGAA-TATT-AAGATGC-TAATTTTA--C-T-GCAAA----T----TATG--TG------TCTTATG-C-TATGCT-GT
gi|8 : AAA-TATTCTAGA-AC-CAACTTTA--GGT-GCAA-----TT--GTGTG--TG------TTTTATGCC-TATGCT-GTTT-TT------------C-------------A--TTA---CG-------AT----TG--------C------TAAA-TCTTAGATA-AT-AATTAT-AATGACTG--TTTATATGTTTTA
gi|15 : ATC-TTGATAC-CAATTTCA--C-T-GCAAA----TT--GTGTA--TG------TCTTATG-T-TATGAT-GATT-TT------------T-------------A--TCA---TATAGTAATGT----TT--AC-ATAC------T-AA-AACTGGGTA-CT-AACT-T-TATTACTG--TATATATGTTTTAatgcaagaccacaatggaaactaatttttatgccaatacatgctatggttaatcctggataaaaaaaaagttattagttatta
gi|19 : ATAC-TAATTTTA--C-T-GCAAA----TT--ATGCG--TG------TTTTATA-C-TATGCT-GTTT-TTATTTCGCCTTTAT-------------A--TCA---TGTAGTCATAT----TT--AC-ATAC------T-AA-TCTTAGATG-CT-AATT-T-TATatgcaggaccacaa
gi|20 : ATAC-TAATTTTA--C---GCAAA----TT--ATGCG--TG------TTTTATA-C-TATGCT-GTTT-TTATTTCGCCTTTAT-------------A--TCA---TGTAGTCATAT----TT--AC-ATAC------T-AA-TCTTAGATG-CT-AATT-T-TAT
gi|21 : aAC-TAATTTTA--C-T-GCAAA----TT--ATGCG--TG------TTTTATA-C-TATGCT-GTTT-TTATTTCGCCTTTAT-------------A--TCA---TGTAGTCATAT----TT--AC-ATAC------T-AA-TCTTAGATG-CT-AATT-T-TAT
gi|23 : AATGTCACTT-T-ACAAAATATTTACGTGTG--TG------TCTTATG-C-TATGCT-GTTT-TT------------T-------------A--TCA---TGTAGTAATAT----TT--GC-ATAC------T-AA-TCT
gi|22 : aat----TT--GTTTG--TG------T-TTGTG-G-T-TTTT-ATTTATT------------T-------------A--TCA---TGTAGTAATATATATTT--AC-ATAC------T-AA-TCCTAGATG-CC-AATT-T-TATGGTTG--AATATATGTTTTA
gi|24 : ------------C-------------A--TCA---TGTAGTAATAT----TT--AC-ATACCGGTACT-AA-TCTTAGAGA-CT-AATT-T-TATGGCTG--TATATATGTTTa
gi|33 : TAC------T-AA-TCTTAGATA-CT-CATT-T-TATGACTGTATATATATGTTTTA
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AGGACCTCTACTAATTTTCTTATTTTCTTGTTTGAACTGGATGACAATGAAGGATTATTTTGTGTTTAGAAAAGATGTCTTTTTGTTCTAAGTTTTAAATAATCAAATGTCAAATTATCTAAACGTGTTTCAATATGCAAGTGATGTC
Unaligned ( gi|12 ): TTTAGAAAAGTTATCTTTTTGTTCAAAGTTTTAAAATAATCAAATGCCAAATTATCTAAACGTGTTTCAATATGCAAATAATATCAATTGTCGCCAAACCAGGTCTAATGATTATATGTCAAATTTATTGTATTTACCAAGGGCTA
Unaligned ( gi|14 ): AATAATCAAATGCCAAAATTTATCTTTAACGTGTTTCATTTAGTATGCAAGGGATGTTAATTGACGCCTCTAAAAAGACCAGGTCTAGCCACGATTTAATTATTTGTTCCAAATTATTAATTGTAATTTTTTACAGGGTTAC
Unaligned ( gi|16 ): CTGGTTTGTTTTCTTTTCTCTTCTACTTTATTTTATCATCTAATGTTCATATTTGTGTATGGCCACTATGAAAAACTAGTTGTATGCTTTAATCTGTGCCATTCTTTTA
Unaligned ( gi|28 ): TCATATATTAAATGCCAACTCTACAGCTGTGTAGATGTTTTAATGCAGGACCACAAT
Unaligned ( gi|29 ): GAAAAGTTGTTTCTTTGTTCAAAGTTTTAGATAATCAAATGCCAAATTATCTAAAC
Unaligned ( gi|32 ): TAATCAAATGCCAAATTATCTAAACGTGTTATAATATGCAAGGGATGTCAAT
Unaligned ( gi|34 ): GTGCTTTATATGTATAAATGTATATTGGATGGACTGACAAAATATTTG
Unaligned ( gi|35 ): AAATTTTTAAATAATCAAATGTCAAATTATCTAAACGCGTTTCAATAT
Alignments
lowQualScore : 1111 11111 11 22 22222222222222222 1 222222222 1111 22222222 11111 111 111 1111 55555555555555555555555555 111111
lowQualScore : 99 6 0000 4 4 4 1 11111 00 5 00 2 0 55 1 99999999999999999 2 4 9999 77 2 4 888 77 0 5 000000000 5 5 5 5 99999 5 2 88 7777 22222222 2 44444 000 000 8888 4 4 55 2 55 2 33 777777 2 2 2 2 44444444444444444444444444 33 444 1 33 6666 2 111111 2 2 2 2 2 2 77
lowQualScore : .. . .... . . . . ..... .. . .. . . .. . ................. . . .... .. . . ... .. . . ......... . . . . ..... . . .. .... ........ . ..... ... ... .... . . .. . .. . .. ...... . . . . .......................... .. ... . .. .... . ...... . . . . . . ..
lowQualScore : 22 7 6666 4 4 4 1 11111 66 0 66 5 2 44 4 66666666666666666 2 4 4444 99 6 3 111 99 1 7 000000000 7 7 0 7 66666 7 3 88 0000 55555555 5 33333 000 000 3333 0 0 22 9 11 9 44 222222 5 5 5 7 22222222222222222222222222 77 777 3 99 1111 9 333333 7 5 7 7 7 7 99
consensus : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAGTCAATGAA--AATGT--GCCAATTAAGATAG-TTGTG---------ATA-T-GACATTGT-GTGT--GTGTT-TATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
Reference ( family-1481 ) : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAGTCTATGAA--AATGT--GCCAATTAAGATAG-TTGTG---------ATA-T-GACATTGT-GTGT--GTGTT-TATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
gi|1 : ATCACAAAA--TG-TTAC----AAACT-CTGG-TTC-GGCTTGCA-----TTTTTAACGCCGTGTGTATATAA-TCCTGACT-ATTTTAGGTA-CT--------------CTT-AA-CA----CCATCCTGT-TTAGTT--TTAATCAATGAC--AGTGT--GCCAATTAAGATAG-TTATG---------ATA-T-GAGATTGT-GTGT-----TT-T-TACA
gi|10 : ttttaataactcgaaatatcaggatctctggtaatttttttattttcttgtttgaactggatgtcagttaaggattattttatgtttagaaaagttgtctttttgttcaaagttttaaataatcaaatgccaaatatctaaacgtgtttcaatatatgcaaggggtgtcaattgtcgtcaaatcaggtcaaatgattatatgtcaaatttattgtatttaccatggactgaaactgaaaattacacacgatcatatagtttctcatccgcatttcTTT-----TCT---CTTA---TATATCATA----CATTTA-AAA-TATT-TAGATTC-CAATTGTAT-A-GCAAATTGTGTGTTTG------TCTTATG-CTAT-GCT-GCTT-TT------------C-------------A--TC---ATGAAG-AATAGCG----CTACGATAC------T-AT-CCTTAGATAGCT-AATT-T-TATGGTTGC-TGT-TATGTT
gi|13 : TTGTTTTT-----TCT---CTTA---TATATCATGATTGTATTTA-AAAATATT-TAAATAC-CAATTTTAC-T-GCGAATCGTGTG--TG------TCTTATG-TTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGA----T-AATT-T-TATGGCT---TATatgttgtatataggcagagacacaatgg
gi|15 : ATC-TTGATAC-CAATTTCAC-T-GCAAATTGTGTA--TG------TCTTATG-TTAT-GAT-GATT-TT------------T-------------A--TC---ATATAGTAATG--T----TTAC-ATAC------T-AA-AACTGGGT-ACT-AACT-T-TATTACTG--TATATATGTTTTA
gi|17 : ACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGATT-TTTTTAGTGA-CT--------------CTTGAA-CA----ACATCCTTTCTTAGTT--TTAGTCATTGAT--AATGT--ACCAATTGAGatgcaggaccacaa
gi|18 : CTGTCACGAAA--TA-TTCG----AAATT-CTGG-TTC-GGCTAGCA-----TTCTCAAACCT--GTGTATATGA-T--GCAAT-ATTTTAGTAA--------------------AAA-CA----
gi|19 : ttctcattaatcctatatattATAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATactctt
gi|2 : TATCACAAGAATTGATTAAGATTAAACTTCTGGATTC-AA---GCAGTCCCTTTTTAAAGCC--GTGTATATGA-TATGGAAT-ATTTTAGTGATCG--------------CTTTAA-CAGCCGCCATCCTTTCC-AGTTCTTTAGTTTATCAATAAATGTATGGCAATTAAGATAGGTTGTG---------ATAAT-GACATTGTTATGTTGGT-TT-TATACCACGTGT----TTTGGCTTTTATTTTGTTTTT-----TTC---TTTA---TAT-TCATGC---CATTTGTAGA-TATT-TAGATACGCAATTTTAT-TGGCAAATTGTGTG--TG------TCTTGTG-C-ATAACTAGTTT-TT------------C-------------A--TC---ATGTA
gi|20 : aaaattacaaacggtccaatagttactatttactcatccttctctcgcatcgctacttccgcatttctttggaaaaacaATAC-TAATTTTAC---GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATt
gi|21 : aAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TAT
gi|22 : TTGTTTG--TG------T-TTGTG-GT-T-TTT-ATTTATT------------T-------------A--TC---ATGTAGTAATA--TATATTTAC-ATAC------T-AA-TCCTAGAT-GCC-AATT-T-TATGGTTG--AATATATGTTTTA
gi|23 : GTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------T-------------A--TC---ATGTAGTAATA--T----TTGC-ATAC------T-AA-TCTa
gi|24 : aataatgtcactttacaaaatatttac------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATACCGGTACT-AA-TCTTAGAG-ACT-AATT-T-TATGGCTG--TATATATGTTT
gi|25 : AG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTGAAGCC--GTGTATATGA-T--G---T--TTTT------CT--------------CTTATA-TA----TCAT
gi|26 : TCATA----TATTTA-GAA-TATT-AAGATGC-TAATTTTAC-T-GCAAAT--TATG--TG------TCTTATG-CTAT-GCT-GT
gi|27 : ATCATG----CATTTA-AAA-TATT----------------AT-T-GCAAATTGTGTG--TG------TCTTTTG-CTAT-TCT-GTTT-T
gi|28 : tgcA-TATTAAAT-GCC-AACT-C-TACAGCTG--TGTAGATGTTTTA
gi|3 : tcatACTATCACAAAA--CG-TTAG----AAACT-CTGG-TTC-GGGTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAGTC-ATGAA--AACAT--GCCAATTAAGATAT-TTGTG---------ATT-T-GACATTGT-GTGT--GTGTT-TGTACAATGTAT----TACG-CTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAG-TATT-TAGATAC-CAATTTCAT-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TGAC-ATAC------T-AA-TCTTAGAT-ACT-AATT-T-TATGGCTG--TATATATGTTTTAatgcaggaccacaat
gi|30 : AA-CA----CCATCCTTTCCTAGTT--TTAGTCAAT-AA--AATGT--GCCAATTAAGATAG-TTGTG---------
gi|31 : AG----AAACT-CTGG-TTC-GGGTG--A-----TTTTTAAAACC--GTGT
gi|33 : TAC------T-AA-TCTTAGAT-ACT-CATT-T-TATGACTGTATATATATGTTTTAtgactactacgatgtaa
gi|4 : ACTGTCACAAAA--TG-TTCG----AAATT-C-GA-TTCGGGCTGACA-----TTTTTAAAGCCT-GTG-ATCTGATT--GTAATAATTTTAATCA-TTTAATAGAAGTAGGACTTAAA-CT----GCG--CTTTCCTG--T--TTAG---ATCAG-----GT--GC--ATT--GATAG--TGTGCCCAACGTTATA-TGGACACTGT--CAT--ATGTTGTATatg
gi|5 : aaattataaacgttcatatagctactatctgtaatttctttataacaaGTG---------ATA-T-GACAT----GTGT--GTGTA-CATACACTATATAAAAAACAGGTT--------TTTTT-----TCTAAACTTAATCTATATAATGT---TATT----AA-TATT-AAGATAC-TAATTCTA--T-ACTTATTTGGTG--TGACGTATTCTTATG-CTAT--CT-CTTT-TT------------TTATTTTCCTTATAA--TCAGTATGTAGTCATA--T----TTAC-ATAC------T-AATTTTTAGAT-GCT-AATT-TATAT-GCTG--TAg
gi|6 : aACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----T----------------ATATGA-TATGGAAT-ATTTTAGTGA-CT--------------CTTAAAACA----CCATGCTTTCCTAGTT--TTAGTCTATGAA--AATGT--GCCAATTAAGATAG-TTGTG---------ATA-T-GACAT--T-GTGT--GTGTC-TATAC-ATGTAT----T
gi|7 : aaattacaaacggtcatatagttactcatcttcatttctttggaacaaGTTTTTGTCCATCT---CTT----TGTATCATT----TATTCA-----TATT-TAGAAAC-TAATCATAT-T-ACTAATTATGTG--TG------TCTTATG-CTAT-TCC-TCCC-TT------------T-------------ATCTC---ATGTAGTCATA--T----TTAC-ATTC------T-AA-GTGTAG-----T-GATT-T-TATGATTG--TGTATACGTTTTA
gi|8 : gtttggtagataacgtgtgtgttgtaatatgaaactgcgcgagttac-AAA-TATTCTAGA-AC-CAACTTTAGGT-GCAA-TTGTGTG--TG------TTTTATGCCTAT-GCT-GTTT-TT------------C-------------A--TT---ACG-----AT--------------TGC------TAAA-TCTTAGAT-AAT-AATTAT-AATGACTG--TTTATATGTTTTAa
gi|9 : -TTGTG---------ATA-T-GACATTGT-GTGT--GT--T-TGTACA-TGTAT----TACG----CTA-TTT---TTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-CAGATAC-CAGTTTTAT-T-GCAAATTGTGTG--TG------TCTCATG-CTAT-GCT-G-TG-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATATAA----T-AA-TCTTA-AT-ACTAAATT-T-TATAGCTG--TATGTATGTTTatgcaagaccacaatggaaactaatttttatgccaatacatgctatggttaatcctggataaaaaaaaagttattagttatta
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGGACCTCTACTAATTTTCTTATTTTCTTGTTTGAACTGGATGACAATGAAGGATTATTTTGTGTTTAGAAAAGATGTCTTTTTGTTCTAAGTTTTAAATAATCAAATGTCAAATTATCTAAACGTGTTTCAATATGCAAGTGATGTC
Unaligned ( gi|12 ): TTTAGAAAAGTTATCTTTTTGTTCAAAGTTTTAAAATAATCAAATGCCAAATTATCTAAACGTGTTTCAATATGCAAATAATATCAATTGTCGCCAAACCAGGTCTAATGATTATATGTCAAATTTATTGTATTTACCAAGGGCTA
Unaligned ( gi|14 ): AATAATCAAATGCCAAAATTTATCTTTAACGTGTTTCATTTAGTATGCAAGGGATGTTAATTGACGCCTCTAAAAAGACCAGGTCTAGCCACGATTTAATTATTTGTTCCAAATTATTAATTGTAATTTTTTACAGGGTTAC
Unaligned ( gi|16 ): CTGGTTTGTTTTCTTTTCTCTTCTACTTTATTTTATCATCTAATGTTCATATTTGTGTATGGCCACTATGAAAAACTAGTTGTATGCTTTAATCTGTGCCATTCTTTTA
Unaligned ( gi|29 ): GAAAAGTTGTTTCTTTGTTCAAAGTTTTAGATAATCAAATGCCAAATTATCTAAAC
Unaligned ( gi|32 ): TAATCAAATGCCAAATTATCTAAACGTGTTATAATATGCAAGGGATGTCAAT
Unaligned ( gi|34 ): GTGCTTTATATGTATAAATGTATATTGGATGGACTGACAAAATATTTG
Unaligned ( gi|35 ): AAATTTTTAAATAATCAAATGTCAAATTATCTAAACGCGTTTCAATAT
Alignments
lowQualScore : 1111 11111 11 22 22222222222222222 1111 2222222 111 11111 1111 22222222 11111 111 111 1111 55555555555555555555555555 111111
lowQualScore : 99 6 0000 4 4 4 1 11111 00 5 00 2 0 55 1 99999999999999999 2 4 9999 77 5 2222 0000000 1 5 77 000 88 5 5 5 33333 4 88 7777 22222222 2 44444 000 000 8888 4 4 55 2 55 2 33 777777 2 2 2 2 44444444444444444444444444 33 444 1 33 6666 2 111111 2 2 2 2 2 2 77
lowQualScore : .. . .... . . . . ..... .. . .. . . .. . ................. . . .... .. . .... ....... . . .. ... .. . . . ..... . .. .... ........ . ..... ... ... .... . . .. . .. . .. ...... . . . . .......................... .. ... . .. .... . ...... . . . . . . ..
lowQualScore : 22 7 6666 4 4 4 1 11111 66 0 66 5 2 44 4 66666666666666666 2 4 4444 99 7 1111 3333333 9 7 99 000 22 7 0 7 33333 2 88 0000 55555555 5 33333 000 000 3333 0 0 22 9 11 9 44 222222 5 5 5 7 22222222222222222222222222 77 777 3 99 1111 9 333333 7 5 7 7 7 7 99
consensus : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
Reference ( family-1481 ) : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAATGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
gi|1 : ATCACAAAA--TG-TTAC----AAACT-CTGG-TTC-GGCTTGCA-----TTTTTAACGCCGTGTGTATATAA-TCCTGACT-ATTTTAGGTA-CT--------------CTT-AA-CA----CCATCCTGT-TTAGTT--TTAA-T----CAA------TGACAGTGTG-CCAA--TTA---AGATAG-TTATGATA-TGAGATTGT-GTGT-----TTT-TACA
gi|10 : ttttaataactcgaaatatcaggatctctggtaatttttttattttcttgtttgaactggatgtcagttaaggattattttatgtttagaaaagttgtctttttgttcaaagttttaaataatcaaatgccaaatatctaaacgtgtttcaatatatgcaaggggtgtcaattgtcgtcaaatcaggtcaaatgattatatgtcaaatttattgtatttaccatggactgaaactgaaaattacacacgatcatatagtttctcatccgcatttcTTT-----TCT---CTTA---TATATCATA----CATTTA-AAA-TATT-TAGATTC-CAATTGTAT-A-GCAAATTGTGTGTTTG------TCTTATG-CTAT-GCT-GCTT-TT------------C-------------A--TC---ATGAAG-AATAGCG----CTACGATAC------T-AT-CCTTAGATAGCT-AATT-T-TATGGTTGC-TGT-TATGTT
gi|13 : TTGTTTTT-----TCT---CTTA---TATATCATGATTGTATTTA-AAAATATT-TAAATAC-CAATTTTAC-T-GCGAATCGTGTG--TG------TCTTATG-TTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGA----T-AATT-T-TATGGCT---TATatgttgtatataggcagagacacaatgg
gi|15 : ATC-TTGATAC-CAATTTCAC-T-GCAAATTGTGTA--TG------TCTTATG-TTAT-GAT-GATT-TT------------T-------------A--TC---ATATAGTAATG--T----TTAC-ATAC------T-AA-AACTGGGT-ACT-AACT-T-TATTACTG--TATATATGTTTTA
gi|17 : ACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGATT-TTTTTAGTGA-CT--------------CTTGAA-CA----ACATCCTTTCTTAGTT--TTAG-T----CAT------TGATAATGTA-CCAA--TTG---AGatgcaggaccacaa
gi|18 : CTGTCACGAAA--TA-TTCG----AAATT-CTGG-TTC-GGCTAGCA-----TTCTCAAACCT--GTGTATATGA-T--GCAAT-ATTTTAGTAA--------------------AAA-CA----
gi|19 : ttctcattaatcctatatattATAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATactctt
gi|2 : TATCACAAGAATTGATTAAGATTAAACTTCTGGATTC-AA---GCAGTCCCTTTTTAAAGCC--GTGTATATGA-TATGGAAT-ATTTTAGTGATCG--------------CTTTAA-CAGCCGCCATCCTTTCC-AGTTCTTTAG-TTTATCAA------TAAATGTATG-GCAA--TTA---AGATAGGTTGTGATAATGACATTGTTATGTTGGT-TTTATACCACGTGT----TTTGGCTTTTATTTTGTTTTT-----TTC---TTTA---TAT-TCATGC---CATTTGTAGA-TATT-TAGATACGCAATTTTAT-TGGCAAATTGTGTG--TG------TCTTGTG-C-ATAACTAGTTT-TT------------C-------------A--TC---ATGTA
gi|20 : aaaattacaaacggtccaatagttactatttactcatccttctctcgcatcgctacttccgcatttctttggaaaaacaATAC-TAATTTTAC---GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATt
gi|21 : aAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TAT
gi|22 : TTGTTTG--TG------T-TTGTG-GT-T-TTT-ATTTATT------------T-------------A--TC---ATGTAGTAATA--TATATTTAC-ATAC------T-AA-TCCTAGAT-GCC-AATT-T-TATGGTTG--AATATATGTTTTA
gi|23 : GTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------T-------------A--TC---ATGTAGTAATA--T----TTGC-ATAC------T-AA-TCTa
gi|24 : aataatgtcactttacaaaatatttac------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATACCGGTACT-AA-TCTTAGAG-ACT-AATT-T-TATGGCTG--TATATATGTTT
gi|25 : AG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTGAAGCC--GTGTATATGA-T--G---T--TTTT------CT--------------CTTATA-TA----TCAT
gi|26 : TCATA----TATTTA-GAA-TATT-AAGATGC-TAATTTTAC-T-GCAAAT--TATG--TG------TCTTATG-CTAT-GCT-GT
gi|27 : ATCATG----CATTTA-AAA-TATT----------------AT-T-GCAAATTGTGTG--TG------TCTTTTG-CTAT-TCT-GTTT-T
gi|28 : tgcA-TATTAAAT-GCC-AACT-C-TACAGCTG--TGTAGATGTTTTA
gi|3 : tcatACTATCACAAAA--CG-TTAG----AAACT-CTGG-TTC-GGGTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CA-------TGAAAACATG-CCAA--TTA---AGATAT-TTGTGATT-TGACATTGT-GTGT--GTGTTTGTACAATGTAT----TACG-CTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAG-TATT-TAGATAC-CAATTTCAT-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TGAC-ATAC------T-AA-TCTTAGAT-ACT-AATT-T-TATGGCTG--TATATATGTTTTAatgcaggaccacaat
gi|30 : AA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------T-AAAATGTG-CCAA--TTA---AGATAG-TTGTG
gi|31 : AG----AAACT-CTGG-TTC-GGGTG--A-----TTTTTAAAACC--GTGT
gi|33 : TAC------T-AA-TCTTAGAT-ACT-CATT-T-TATGACTGTATATATATGTTTTAtgactactacgatgtaa
gi|4 : ACTGTCACAAAA--TG-TTCG----AAATT-C-GA-TTCGGGCTGACA-----TTTTTAAAGCCT-GTG-ATCTGATT--GTAATAATTTTAATCA-TTTAATAGAAGTAGGACTTAAA-CT----GCG--CTTTCCTG--T--TTAGAT----CAGGTGCATTGATAGTGTGCCCAACGTTATATGGACA--CTGTCATA-TG---TTGT-ATGatg
gi|5 : aaattataaacgttcatatagctactatctgtaatttctttataacaaGTGATA-TGACAT----GTGT--GTGTACATACACTATATAAAAAACAGGTT--------TTTTT-----TCTAAACTTAATCTATATAATGT---TATT----AA-TATT-AAGATAC-TAATTCTA--T-ACTTATTTGGTG--TGACGTATTCTTATG-CTAT--CT-CTTT-TT------------TTATTTTCCTTATAA--TCAGTATGTAGTCATA--T----TTAC-ATAC------T-AATTTTTAGAT-GCT-AATT-TATAT-GCTG--TA
gi|6 : aACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----T----------------ATATGA-TATGGAAT-ATTTTAGTGA-CT--------------CTTAAAACA----CCATGCTTTCCTAGTT--TTAG-T----CTA------TGAAAATGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACAT--T-GTGT--GTGTCTATAC-ATGTAT----T
gi|7 : aaattacaaacggtcatatagttactcatcttcatttctttggaacaaGTTTTTGTCCATCT---CTT----TGTATCATT----TATTCA-----TATT-TAGAAAC-TAATCATAT-T-ACTAATTATGTG--TG------TCTTATG-CTAT-TCC-TCCC-TT------------T-------------ATCTC---ATGTAGTCATA--T----TTAC-ATTC------T-AA-GTGTAG-----T-GATT-T-TATGATTG--TGTATACGTTTTA
gi|8 : gtttggtagataacgtgtgtgttgtaatatgaaactgcgcgagttac-AAA-TATTCTAGA-AC-CAACTTTAGGT-GCAA-TTGTGTG--TG------TTTTATGCCTAT-GCT-GTTT-TT------------C-------------A--TT---ACG-----AT--------------TGC------TAAA-TCTTAGAT-AAT-AATTAT-AATGACTG--TTTATATGTTTTAa
gi|9 : -TTGTGATA-TGACATTGT-GTGT--GT--TTGTACA-TGTAT----TACG----CTA-TTT---TTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-CAGATAC-CAGTTTTAT-T-GCAAATTGTGTG--TG------TCTCATG-CTAT-GCT-G-TG-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATATAA----T-AA-TCTTA-AT-ACTAAATT-T-TATAGCTG--TATGTATGTTTatgcaagaccacaatggaaactaatttttatgccaatacatgctatggttaatcctggataaaaaaaaagttattagttatta
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGGACCTCTACTAATTTTCTTATTTTCTTGTTTGAACTGGATGACAATGAAGGATTATTTTGTGTTTAGAAAAGATGTCTTTTTGTTCTAAGTTTTAAATAATCAAATGTCAAATTATCTAAACGTGTTTCAATATGCAAGTGATGTC
Unaligned ( gi|12 ): TTTAGAAAAGTTATCTTTTTGTTCAAAGTTTTAAAATAATCAAATGCCAAATTATCTAAACGTGTTTCAATATGCAAATAATATCAATTGTCGCCAAACCAGGTCTAATGATTATATGTCAAATTTATTGTATTTACCAAGGGCTA
Unaligned ( gi|14 ): AATAATCAAATGCCAAAATTTATCTTTAACGTGTTTCATTTAGTATGCAAGGGATGTTAATTGACGCCTCTAAAAAGACCAGGTCTAGCCACGATTTAATTATTTGTTCCAAATTATTAATTGTAATTTTTTACAGGGTTAC
Unaligned ( gi|16 ): CTGGTTTGTTTTCTTTTCTCTTCTACTTTATTTTATCATCTAATGTTCATATTTGTGTATGGCCACTATGAAAAACTAGTTGTATGCTTTAATCTGTGCCATTCTTTTA
Unaligned ( gi|29 ): GAAAAGTTGTTTCTTTGTTCAAAGTTTTAGATAATCAAATGCCAAATTATCTAAAC
Unaligned ( gi|32 ): TAATCAAATGCCAAATTATCTAAACGTGTTATAATATGCAAGGGATGTCAAT
Unaligned ( gi|34 ): GTGCTTTATATGTATAAATGTATATTGGATGGACTGACAAAATATTTG
Unaligned ( gi|35 ): AAATTTTTAAATAATCAAATGTCAAATTATCTAAACGCGTTTCAATAT
Alignments
lowQualScore : 1111 11111 11 22 22222222222222222 1111 2222222 111 11111 1111 22222222 11111 111 111 1111 55555555555555555555555555 111111
lowQualScore : 99 6 0000 4 4 4 1 11111 00 5 00 2 0 55 1 99999999999999999 2 4 9999 77 5 2222 0000000 1 5 77 000 88 5 5 5 33333 4 88 7777 22222222 2 44444 000 000 8888 4 4 55 2 55 2 33 777777 2 2 2 2 44444444444444444444444444 33 444 1 33 6666 2 111111 2 2 2 2 2 2 77
lowQualScore : .. . .... . . . . ..... .. . .. . . .. . ................. . . .... .. . .... ....... . . .. ... .. . . . ..... . .. .... ........ . ..... ... ... .... . . .. . .. . .. ...... . . . . .......................... .. ... . .. .... . ...... . . . . . . ..
lowQualScore : 22 7 6666 4 4 4 1 11111 66 0 66 5 2 44 4 66666666666666666 2 4 4444 99 7 1111 3333333 9 7 99 000 22 7 0 7 33333 2 88 0000 55555555 5 33333 000 000 3333 0 0 22 9 11 9 44 222222 5 5 5 7 22222222222222222222222222 77 777 3 99 1111 9 333333 7 5 7 7 7 7 99
consensus : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
Reference ( family-1481 ) : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
gi|1 : ATCACAAAA--TG-TTAC----AAACT-CTGG-TTC-GGCTTGCA-----TTTTTAACGCCGTGTGTATATAA-TCCTGACT-ATTTTAGGTA-CT--------------CTT-AA-CA----CCATCCTGT-TTAGTT--TTAA-T----CAA------TGACAGTGTG-CCAA--TTA---AGATAG-TTATGATA-TGAGATTGT-GTGT-----TTT-TACA
gi|10 : ttttaataactcgaaatatcaggatctctggtaatttttttattttcttgtttgaactggatgtcagttaaggattattttatgtttagaaaagttgtctttttgttcaaagttttaaataatcaaatgccaaatatctaaacgtgtttcaatatatgcaaggggtgtcaattgtcgtcaaatcaggtcaaatgattatatgtcaaatttattgtatttaccatggactgaaactgaaaattacacacgatcatatagtttctcatccgcatttcTTT-----TCT---CTTA---TATATCATA----CATTTA-AAA-TATT-TAGATTC-CAATTGTAT-A-GCAAATTGTGTGTTTG------TCTTATG-CTAT-GCT-GCTT-TT------------C-------------A--TC---ATGAAG-AATAGCG----CTACGATAC------T-AT-CCTTAGATAGCT-AATT-T-TATGGTTGC-TGT-TATGTT
gi|13 : TTGTTTTT-----TCT---CTTA---TATATCATGATTGTATTTA-AAAATATT-TAAATAC-CAATTTTAC-T-GCGAATCGTGTG--TG------TCTTATG-TTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGA----T-AATT-T-TATGGCT---TATatgttgtatataggcagagacacaatgg
gi|15 : ATC-TTGATAC-CAATTTCAC-T-GCAAATTGTGTA--TG------TCTTATG-TTAT-GAT-GATT-TT------------T-------------A--TC---ATATAGTAATG--T----TTAC-ATAC------T-AA-AACTGGGT-ACT-AACT-T-TATTACTG--TATATATGTTTTA
gi|17 : ACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGATT-TTTTTAGTGA-CT--------------CTTGAA-CA----ACATCCTTTCTTAGTT--TTAG-T----CAT------TGATAATGTA-CCAA--TTG---AGatgcaggaccacaa
gi|18 : CTGTCACGAAA--TA-TTCG----AAATT-CTGG-TTC-GGCTAGCA-----TTCTCAAACCT--GTGTATATGA-T--GCAAT-ATTTTAGTAA--------------------AAA-CA----
gi|19 : ttctcattaatcctatatattATAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATactctt
gi|2 : TATCACAAGAATTGATTAAGATTAAACTTCTGGATTC-AA---GCAGTCCCTTTTTAAAGCC--GTGTATATGA-TATGGAAT-ATTTTAGTGATCG--------------CTTTAA-CAGCCGCCATCCTTTCC-AGTTCTTTAG-TTTATCAA------TAAATGTATG-GCAA--TTA---AGATAGGTTGTGATAATGACATTGTTATGTTGGT-TTTATACCACGTGT----TTTGGCTTTTATTTTGTTTTT-----TTC---TTTA---TAT-TCATGC---CATTTGTAGA-TATT-TAGATACGCAATTTTAT-TGGCAAATTGTGTG--TG------TCTTGTG-C-ATAACTAGTTT-TT------------C-------------A--TC---ATGTA
gi|20 : aaaattacaaacggtccaatagttactatttactcatccttctctcgcatcgctacttccgcatttctttggaaaaacaATAC-TAATTTTAC---GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATt
gi|21 : aAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TAT
gi|22 : TTGTTTG--TG------T-TTGTG-GT-T-TTT-ATTTATT------------T-------------A--TC---ATGTAGTAATA--TATATTTAC-ATAC------T-AA-TCCTAGAT-GCC-AATT-T-TATGGTTG--AATATATGTTTTA
gi|23 : GTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------T-------------A--TC---ATGTAGTAATA--T----TTGC-ATAC------T-AA-TCTa
gi|24 : aataatgtcactttacaaaatatttac------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATACCGGTACT-AA-TCTTAGAG-ACT-AATT-T-TATGGCTG--TATATATGTTT
gi|25 : AG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTGAAGCC--GTGTATATGA-T--G---T--TTTT------CT--------------CTTATA-TA----TCAT
gi|26 : TCATA----TATTTA-GAA-TATT-AAGATGC-TAATTTTAC-T-GCAAAT--TATG--TG------TCTTATG-CTAT-GCT-GT
gi|27 : ATCATG----CATTTA-AAA-TATT----------------AT-T-GCAAATTGTGTG--TG------TCTTTTG-CTAT-TCT-GTTT-T
gi|28 : tgcA-TATTAAAT-GCC-AACT-C-TACAGCTG--TGTAGATGTTTTA
gi|3 : tcatACTATCACAAAA--CG-TTAG----AAACT-CTGG-TTC-GGGTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CA-------TGAAAACATG-CCAA--TTA---AGATAT-TTGTGATT-TGACATTGT-GTGT--GTGTTTGTACAATGTAT----TACG-CTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAG-TATT-TAGATAC-CAATTTCAT-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TGAC-ATAC------T-AA-TCTTAGAT-ACT-AATT-T-TATGGCTG--TATATATGTTTTAatgcaggaccacaat
gi|30 : AA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------T-AAAATGTG-CCAA--TTA---AGATAG-TTGTG
gi|31 : AG----AAACT-CTGG-TTC-GGGTG--A-----TTTTTAAAACC--GTGT
gi|33 : TAC------T-AA-TCTTAGAT-ACT-CATT-T-TATGACTGTATATATATGTTTTAtgactactacgatgtaa
gi|4 : ACTGTCACAAAA--TG-TTCG----AAATT-C-GA-TTCGGGCTGACA-----TTTTTAAAGCCT-GTG-ATCTGATT--GTAATAATTTTAATCA-TTTAATAGAAGTAGGACTTAAA-CT----GCG--CTTTCCTG--T--TTAGAT----CAGGTGCATTGATAGTGTGCCCAACGTTATATGGACA--CTGTCATA-TG---TTGT-ATGatg
gi|5 : aaattataaacgttcatatagctactatctgtaatttctttataacaaGTGATA-TGACAT----GTGT--GTGTACATACACTATATAAAAAACAGGTT--------TTTTT-----TCTAAACTTAATCTATATAATGT---TATT----AA-TATT-AAGATAC-TAATTCTA--T-ACTTATTTGGTG--TGACGTATTCTTATG-CTAT--CT-CTTT-TT------------TTATTTTCCTTATAA--TCAGTATGTAGTCATA--T----TTAC-ATAC------T-AATTTTTAGAT-GCT-AATT-TATAT-GCTG--TA
gi|6 : aACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----T----------------ATATGA-TATGGAAT-ATTTTAGTGA-CT--------------CTTAAAACA----CCATGCTTTCCTAGTT--TTAG-T----CTA------TGAAAATGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACAT--T-GTGT--GTGTCTATAC-ATGTAT----T
gi|7 : aaattacaaacggtcatatagttactcatcttcatttctttggaacaaGTTTTTGTCCATCT---CTT----TGTATCATT----TATTCA-----TATT-TAGAAAC-TAATCATAT-T-ACTAATTATGTG--TG------TCTTATG-CTAT-TCC-TCCC-TT------------T-------------ATCTC---ATGTAGTCATA--T----TTAC-ATTC------T-AA-GTGTAG-----T-GATT-T-TATGATTG--TGTATACGTTTTA
gi|8 : gtttggtagataacgtgtgtgttgtaatatgaaactgcgcgagttac-AAA-TATTCTAGA-AC-CAACTTTAGGT-GCAA-TTGTGTG--TG------TTTTATGCCTAT-GCT-GTTT-TT------------C-------------A--TT---ACG-----AT--------------TGC------TAAA-TCTTAGAT-AAT-AATTAT-AATGACTG--TTTATATGTTTTAa
gi|9 : -TTGTGATA-TGACATTGT-GTGT--GT--TTGTACA-TGTAT----TACG----CTA-TTT---TTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-CAGATAC-CAGTTTTAT-T-GCAAATTGTGTG--TG------TCTCATG-CTAT-GCT-G-TG-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATATAA----T-AA-TCTTA-AT-ACTAAATT-T-TATAGCTG--TATGTATGTTTatgcaagaccacaatggaaactaatttttatgccaatacatgctatggttaatcctggataaaaaaaaagttattagttatta
blockSeqs : AT A GATT T A G C GTCCC T T AT G AA G TTTAATAGAAGTAGGA G A GCCG CT A TTAT GGTGCAT T C CG TAT GG A T T TGGT A AA AAAA CTTTTA G GTCCA AAA ATC ATTG T A CT G GG G . ACGTAT C A A A TTATTTTCCTTATA TC AGT A . ATAT . CGGTAC A T . A A A TA
blockSeqs : . . . . . . C . . . AT C T A TCG A . . . . . T A . . . T . T . GTG G AC . GGTT G . . . C . . T . C . . . . . . . ATTTCGCCTTTAT . . A . . . AA . . . . . . .
blockSeqs : . . . . . . C . . . . G A G CT T . . . . . A A . . . G . T . GTG A A . CTA G . . . T . . T . C . . . . . . . ATTTCGCCTTTAT . . C . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . G A G CT A . . . . . A A . . . G . T . GTG A A . . . . . . . . T . C . . . . . . . ATTTCGCCTTTAT . . C . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . T A C CT A . . . . . A T . . . . . . . GT G . . . . . . . A . T . . . . . . . C . . C . . . . . . . . . . .
blockSeqs : . . . . C . . . . G A G CT A . . . . . . A . . . . . . . . . . . . T . C . . . . . . . T . . A . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . A . . . . . A . C . . . . . . . C . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . C . . . . . . . T . . A . . . . . . . . . . .
blockSeqs : . . C . T . . . . . . . T . . A . . . . . . . . . . .
blockSeqs : . . T . . . . . . . C . . C . . . . . . . . . . .
blockSeqs : . T . . . . . . . C . . C . . . . . . . . . . .
blockSeqs : . T . . . . . . . T . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ** ** GTG** ** ** **
originalCons : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
finalCons : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGTGTG--TTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGGACCTCTACTAATTTTCTTATTTTCTTGTTTGAACTGGATGACAATGAAGGATTATTTTGTGTTTAGAAAAGATGTCTTTTTGTTCTAAGTTTTAAATAATCAAATGTCAAATTATCTAAACGTGTTTCAATATGCAAGTGATGTC
Unaligned ( gi|12 ): TTTAGAAAAGTTATCTTTTTGTTCAAAGTTTTAAAATAATCAAATGCCAAATTATCTAAACGTGTTTCAATATGCAAATAATATCAATTGTCGCCAAACCAGGTCTAATGATTATATGTCAAATTTATTGTATTTACCAAGGGCTA
Unaligned ( gi|14 ): AATAATCAAATGCCAAAATTTATCTTTAACGTGTTTCATTTAGTATGCAAGGGATGTTAATTGACGCCTCTAAAAAGACCAGGTCTAGCCACGATTTAATTATTTGTTCCAAATTATTAATTGTAATTTTTTACAGGGTTAC
Unaligned ( gi|16 ): CTGGTTTGTTTTCTTTTCTCTTCTACTTTATTTTATCATCTAATGTTCATATTTGTGTATGGCCACTATGAAAAACTAGTTGTATGCTTTAATCTGTGCCATTCTTTTA
Unaligned ( gi|29 ): GAAAAGTTGTTTCTTTGTTCAAAGTTTTAGATAATCAAATGCCAAATTATCTAAAC
Unaligned ( gi|32 ): TAATCAAATGCCAAATTATCTAAACGTGTTATAATATGCAAGGGATGTCAAT
Unaligned ( gi|34 ): GTGCTTTATATGTATAAATGTATATTGGATGGACTGACAAAATATTTG
Unaligned ( gi|35 ): AAATTTTTAAATAATCAAATGTCAAATTATCTAAACGCGTTTCAATAT
Alignments
lowQualScore : 1111 11111 11 22 22222222222222222 1111 2222222 111 11111 1111 22222222 11111 111 111 1111 55555555555555555555555555 111111
lowQualScore : 99 6 0000 4 4 4 1 11111 00 5 00 2 0 55 1 99999999999999999 2 4 9999 77 5 2222 0000000 1 5 77 000 88 5 5 5 33333 4 88 7777 22222222 2 44444 000 000 8888 4 4 55 2 55 2 33 777777 2 2 2 2 44444444444444444444444444 33 444 1 33 6666 2 111111 2 2 2 2 2 2 77
lowQualScore : .. . .... . . . . ..... .. . .. . . .. . ................. . . .... .. . .... ....... . . .. ... .. . . . ..... . .. .... ........ . ..... ... ... .... . . .. . .. . .. ...... . . . . .......................... .. ... . .. .... . ...... . . . . . . ..
lowQualScore : 22 7 6666 4 4 4 1 11111 66 0 66 5 2 44 4 66666666666666666 2 4 4444 99 7 1111 3333333 9 7 99 000 22 7 0 7 33333 2 88 0000 55555555 5 33333 000 000 3333 0 0 22 9 11 9 44 222222 5 5 5 7 22222222222222222222222222 77 777 3 99 1111 9 333333 7 5 7 7 7 7 99
consensus : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
Reference ( family-1481 ) : ACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------TGAAAGTGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACATTGT-GTGT--GTGTTTATACAATGTAT----TACGGCTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-TAGATAC-CAATTTTAC-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATGGCTG--TATATATGTTTTA
gi|1 : ATCACAAAA--TG-TTAC----AAACT-CTGG-TTC-GGCTTGCA-----TTTTTAACGCCGTGTGTATATAA-TCCTGACT-ATTTTAGGTA-CT--------------CTT-AA-CA----CCATCCTGT-TTAGTT--TTAA-T----CAA------TGACAGTGTG-CCAA--TTA---AGATAG-TTATGATA-TGAGATTGT-GTGT-----TTT-TACA
gi|10 : ttttaataactcgaaatatcaggatctctggtaatttttttattttcttgtttgaactggatgtcagttaaggattattttatgtttagaaaagttgtctttttgttcaaagttttaaataatcaaatgccaaatatctaaacgtgtttcaatatatgcaaggggtgtcaattgtcgtcaaatcaggtcaaatgattatatgtcaaatttattgtatttaccatggactgaaactgaaaattacacacgatcatatagtttctcatccgcatttcTTT-----TCT---CTTA---TATATCATA----CATTTA-AAA-TATT-TAGATTC-CAATTGTAT-A-GCAAATTGTGTGTTTG------TCTTATG-CTAT-GCT-GCTT-TT------------C-------------A--TC---ATGAAG-AATAGCG----CTACGATAC------T-AT-CCTTAGATAGCT-AATT-T-TATGGTTGC-TGT-TATGTT
gi|13 : TTGTTTTT-----TCT---CTTA---TATATCATGATTGTATTTA-AAAATATT-TAAATAC-CAATTTTAC-T-GCGAATCGTGTG--TG------TCTTATG-TTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATAC------T-AA-TCTTAGA----T-AATT-T-TATGGCT---TATatgttgtatataggcagagacacaatgg
gi|15 : ATC-TTGATAC-CAATTTCAC-T-GCAAATTGTGTA--TG------TCTTATG-TTAT-GAT-GATT-TT------------T-------------A--TC---ATATAGTAATG--T----TTAC-ATAC------T-AA-AACTGGGT-ACT-AACT-T-TATTACTG--TATATATGTTTTA
gi|17 : ACT-CTGG-TTC-GGCTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGATT-TTTTTAGTGA-CT--------------CTTGAA-CA----ACATCCTTTCTTAGTT--TTAG-T----CAT------TGATAATGTA-CCAA--TTG---AGatgcaggaccacaa
gi|18 : CTGTCACGAAA--TA-TTCG----AAATT-CTGG-TTC-GGCTAGCA-----TTCTCAAACCT--GTGTATATGA-T--GCAAT-ATTTTAGTAA--------------------AAA-CA----
gi|19 : ttctcattaatcctatatattATAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATactctt
gi|2 : TATCACAAGAATTGATTAAGATTAAACTTCTGGATTC-AA---GCAGTCCCTTTTTAAAGCC--GTGTATATGA-TATGGAAT-ATTTTAGTGATCG--------------CTTTAA-CAGCCGCCATCCTTTCC-AGTTCTTTAG-TTTATCAA------TAAATGTATG-GCAA--TTA---AGATAGGTTGTGATAATGACATTGTTATGTTGGT-TTTATACCACGTGT----TTTGGCTTTTATTTTGTTTTT-----TTC---TTTA---TAT-TCATGC---CATTTGTAGA-TATT-TAGATACGCAATTTTAT-TGGCAAATTGTGTG--TG------TCTTGTG-C-ATAACTAGTTT-TT------------C-------------A--TC---ATGTA
gi|20 : aaaattacaaacggtccaatagttactatttactcatccttctctcgcatcgctacttccgcatttctttggaaaaacaATAC-TAATTTTAC---GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TATt
gi|21 : aAC-TAATTTTAC-T-GCAAATTATGCG--TG------TTTTATA-CTAT-GCT-GTTT-TTATTTCGCCTTTAT-------------A--TC---ATGTAGTCATA--T----TTAC-ATAC------T-AA-TCTTAGAT-GCT-AATT-T-TAT
gi|22 : TTGTTTG--TG------T-TTGTG-GT-T-TTT-ATTTATT------------T-------------A--TC---ATGTAGTAATA--TATATTTAC-ATAC------T-AA-TCCTAGAT-GCC-AATT-T-TATGGTTG--AATATATGTTTTA
gi|23 : GTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------T-------------A--TC---ATGTAGTAATA--T----TTGC-ATAC------T-AA-TCTa
gi|24 : aataatgtcactttacaaaatatttac------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATACCGGTACT-AA-TCTTAGAG-ACT-AATT-T-TATGGCTG--TATATATGTTT
gi|25 : AG----AAACT-CTGG-TTC-GGCTGGCA-----TTTTTGAAGCC--GTGTATATGA-T--G---T--TTTT------CT--------------CTTATA-TA----TCAT
gi|26 : TCATA----TATTTA-GAA-TATT-AAGATGC-TAATTTTAC-T-GCAAAT--TATG--TG------TCTTATG-CTAT-GCT-GT
gi|27 : ATCATG----CATTTA-AAA-TATT----------------AT-T-GCAAATTGTGTG--TG------TCTTTTG-CTAT-TCT-GTTT-T
gi|28 : tgcA-TATTAAAT-GCC-AACT-C-TACAGCTG--TGTAGATGTTTTA
gi|3 : tcatACTATCACAAAA--CG-TTAG----AAACT-CTGG-TTC-GGGTGGCA-----TTTTTAAAGCC--GTGTATATGA-T--GGAAT-ATTTTAGTGA-CT--------------CTTAAA-CA----CCATCCTTTCCTAGTT--TTAG-T----CA-------TGAAAACATG-CCAA--TTA---AGATAT-TTGTGATT-TGACATTGT-GTGT--GTGTTTGTACAATGTAT----TACG-CTTTTA-TTTGTTTTT-----TCT---CTTA---TATATCATG----CATTTA-AAG-TATT-TAGATAC-CAATTTCAT-T-GCAAATTGTGTG--TG------TCTTATG-CTAT-GCT-GTTT-TT------------C-------------A--TC---ATGTAGTAATA--T----TGAC-ATAC------T-AA-TCTTAGAT-ACT-AATT-T-TATGGCTG--TATATATGTTTTAatgcaggaccacaat
gi|30 : AA-CA----CCATCCTTTCCTAGTT--TTAG-T----CAA------T-AAAATGTG-CCAA--TTA---AGATAG-TTGTG
gi|31 : AG----AAACT-CTGG-TTC-GGGTG--A-----TTTTTAAAACC--GTGT
gi|33 : TAC------T-AA-TCTTAGAT-ACT-CATT-T-TATGACTGTATATATATGTTTTAtgactactacgatgtaa
gi|4 : ACTGTCACAAAA--TG-TTCG----AAATT-C-GA-TTCGGGCTGACA-----TTTTTAAAGCCT-GTG-ATCTGATT--GTAATAATTTTAATCA-TTTAATAGAAGTAGGACTTAAA-CT----GCG--CTTTCCTG--T--TTAGAT----CAGGTGCATTGATAGTGTGCCCAACGTTATATGGACA--CTGTCATA-TG---TTGT-ATGatg
gi|5 : aaattataaacgttcatatagctactatctgtaatttctttataacaaGTGATA-TGACAT----GTGT--GTGTACATACACTATATAAAAAACAGGTT--------TTTTT-----TCTAAACTTAATCTATATAATGT---TATT----AA-TATT-AAGATAC-TAATTCTA--T-ACTTATTTGGTG--TGACGTATTCTTATG-CTAT--CT-CTTT-TT------------TTATTTTCCTTATAA--TCAGTATGTAGTCATA--T----TTAC-ATAC------T-AATTTTTAGAT-GCT-AATT-TATAT-GCTG--TA
gi|6 : aACTATCACAAAA--TG-TTAG----AAACT-CTGG-TTC-GGCTGGCA-----T----------------ATATGA-TATGGAAT-ATTTTAGTGA-CT--------------CTTAAAACA----CCATGCTTTCCTAGTT--TTAG-T----CTA------TGAAAATGTG-CCAA--TTA---AGATAG-TTGTGATA-TGACAT--T-GTGT--GTGTCTATAC-ATGTAT----T
gi|7 : aaattacaaacggtcatatagttactcatcttcatttctttggaacaaGTTTTTGTCCATCT---CTT----TGTATCATT----TATTCA-----TATT-TAGAAAC-TAATCATAT-T-ACTAATTATGTG--TG------TCTTATG-CTAT-TCC-TCCC-TT------------T-------------ATCTC---ATGTAGTCATA--T----TTAC-ATTC------T-AA-GTGTAG-----T-GATT-T-TATGATTG--TGTATACGTTTTA
gi|8 : gtttggtagataacgtgtgtgttgtaatatgaaactgcgcgagttac-AAA-TATTCTAGA-AC-CAACTTTAGGT-GCAA-TTGTGTG--TG------TTTTATGCCTAT-GCT-GTTT-TT------------C-------------A--TT---ACG-----AT--------------TGC------TAAA-TCTTAGAT-AAT-AATTAT-AATGACTG--TTTATATGTTTTAa
gi|9 : -TTGTGATA-TGACATTGT-GTGT--GT--TTGTACA-TGTAT----TACG----CTA-TTT---TTT-----TCT---CTTA---TATATCATG----CATTTA-AAA-TATT-CAGATAC-CAGTTTTAT-T-GCAAATTGTGTG--TG------TCTCATG-CTAT-GCT-G-TG-TT------------C-------------A--TC---ATGTAGTAATA--T----TTAC-ATATAA----T-AA-TCTTA-AT-ACTAAATT-T-TATAGCTG--TATGTATGTTTatgcaagaccacaatggaaactaatttttatgccaatacatgctatggttaatcctggataaaaaaaaagttattagttatta
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGGACCTCTACTAATTTTCTTATTTTCTTGTTTGAACTGGATGACAATGAAGGATTATTTTGTGTTTAGAAAAGATGTCTTTTTGTTCTAAGTTTTAAATAATCAAATGTCAAATTATCTAAACGTGTTTCAATATGCAAGTGATGTC
Unaligned ( gi|12 ): TTTAGAAAAGTTATCTTTTTGTTCAAAGTTTTAAAATAATCAAATGCCAAATTATCTAAACGTGTTTCAATATGCAAATAATATCAATTGTCGCCAAACCAGGTCTAATGATTATATGTCAAATTTATTGTATTTACCAAGGGCTA
Unaligned ( gi|14 ): AATAATCAAATGCCAAAATTTATCTTTAACGTGTTTCATTTAGTATGCAAGGGATGTTAATTGACGCCTCTAAAAAGACCAGGTCTAGCCACGATTTAATTATTTGTTCCAAATTATTAATTGTAATTTTTTACAGGGTTAC
Unaligned ( gi|16 ): CTGGTTTGTTTTCTTTTCTCTTCTACTTTATTTTATCATCTAATGTTCATATTTGTGTATGGCCACTATGAAAAACTAGTTGTATGCTTTAATCTGTGCCATTCTTTTA
Unaligned ( gi|29 ): GAAAAGTTGTTTCTTTGTTCAAAGTTTTAGATAATCAAATGCCAAATTATCTAAAC
Unaligned ( gi|32 ): TAATCAAATGCCAAATTATCTAAACGTGTTATAATATGCAAGGGATGTCAAT
Unaligned ( gi|34 ): GTGCTTTATATGTATAAATGTATATTGGATGGACTGACAAAATATTTG
Unaligned ( gi|35 ): AAATTTTTAAATAATCAAATGTCAAATTATCTAAACGCGTTTCAATAT