lowQualScore : 11111111111111111111 111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222
lowQualScore : 222 1 1 00000000000000000000 22 222 1 2 333333333333333333333333333333333333333333 11 55555555555555555 111 1 2222 55555555555 1 1 1 11 55555555 111 444444444 0000000000000000000000000000000000000000000000000000000 1 9999999 1 4444 8888 4 2 1 222
lowQualScore : 111 3 1 3 7 55555555555555555555 2 77 111 5 0 88 2 555555555555555555555555555555555555555555 11 5 0 44444444444444444 5 111 0 3333 33333333333 0 5 0 7 0 88 0 2 33333333 777 777777777 0 9999999999999999999999999999999999999999999999999999999 5 6 6666666 6 6 5 1111 5555 0 2 0 5 6 4 000
lowQualScore : ... . . . . .................... . .. ... . . .. . .......................................... .. . . ................. . ... . .... ........... . . . . . .. . . ........ ... ......... . ....................................................... . . ....... . . . .... .... . . . . . . ...
lowQualScore : 000 3 0 2 0 00000000000000000000 5 55 555 0 0 00 5 333333333333333333333333333333333333333333 22 0 8 00000000000000000 0 777 0 0000 22222222222 8 0 0 0 0 00 8 5 88888888 555 888888888 2 7777777777777777777777777777777777777777777777777777777 0 0 0000000 0 0 0 0000 0000 0 5 0 0 0 0 000
consensus : AAAAATTTCTTCCAATTG-CAGGTG-GCTCGGAGGTTGAATCTCGTGTAAATATACATGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTGTTACTTTTTTTTAGCAACATAAANCTCCATCAGAGGTCATNTCAGTAAATATTTCTCTTGTANNATGAANACCCATTATAATTGTGTGAATATATA-----TA-TGTACA----CACACAATAAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCA-AC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTNTAACACTCAT-A------TAT---AACATTN--------CACACTAAATATCATCGAATATCGAG------------GTNAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTNAGATATGAAAAAAGGGGAGGGGGTNAGCAAGGAGTGTT
Reference ( gi|2 ) : AAAAATTTCTTCCAATTGACAGGTG-GCTCAGAGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTAAAAGATA-TGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCA-AC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATTA------TAT---AACATTA--------CACACTAAATATCATCGAATATTGAG------------GTAA----AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATATAAAA-AAGGGGAGGGGATTAGCAATGCGTGTT
gi|6 : AAAAATTTCTTCCAATTG-CAGGTG-GCTCGGAGGTTGAATCTCATGTGAATATACATGTATA
gi|16 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagAAAAATTTCTTCCAATTGACAGGTG-GCTCGGAGGTTGAATCTCGTG-AAATATttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|11 : ggtgaacggcgcggatctgacatatgttttgtgaggtAAATATATCTTCCAAT-----GGTATATTGACAGATTGAATTTCGTGTAAATATACATG
gi|17 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatGAGGTTGAATCTCATATATATAT
gi|4 : gtggatccgagcagaagTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTG-------------------------------AATGAATTTAAAACAGCGGCTCG----TTA-AGAT--ATAAGCTATTTTGCT---ACCCCCA-AC--C------CTTAA------------------ACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCAT--------TAT---AACATTT--------CACACTAAATATCATCGAATtgcagattttcttgaatgttgtgttgaagtttcaataa
gi|3 : gcttgtatttattgtttactttgTTT-AGCAACATAAATC------AGAGGTTATGTCAGTAAAT---TCTCTT-TATTATAAATAC-----AT--TT-----AATATATA-----TACTATACA----CACACAAT------AAAACATAGACTCG----TTGGACAT----AAGCTATTTTTCTAACACCCCC
gi|1 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataAATATATAGAAGATA-TGAACATATGCACACAATAAATTTAAAACAGGGGTTCGTTGGT--------CATCAGCTATTTTGCT---AAGCTCA-CCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCAT--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTA----AA---AAAAT------------AG-TT-----ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAA-AA-GAAAGAAGGTAAGCAAGGAATGTTcccc
gi|18 : gaaatcatgtcagctttTATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---Actgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|8 : atgtatacTTTAAAACAGCGGCTCGATCGTTAGACATG----AGCTCTTTTGCT---ACCCCCA-AC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCATTACTCGTATAT---AACATTG--------CACACTAAATATCATCGAATATTGAG------------GTa
gi|7 : CC---ACCCACACAC--C-ATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCATAA------CATTGAAATATTT--------CACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGTAAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAA
gi|5 : cGAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTTgcgcttcaaaactaaata
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 666666 33 2 1 55555555555555555 1111 1111 111 11 33333333333 11 1 44444444 111 333333333 555555555555 2222 333333 111 1 4444 2222 2 1
lowQualScore : 0 0 3 0 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 7 00 7 111111 0 11 1 00 7 0 3 3 22 1 7 7 7 7 22 99999999999999999 99 1 7777 1 3 4444 2 000 0 11 0 1 55555555555 00 8 3 8 0 1 8 44444444 444 000000000 2 111111111111 1 0000 555555 7 000 5 3 2222 3 3 88 4 3333 0 1 0 2 7 1
lowQualScore : . . . . . ................................................................................................................................................... . . .. . ...... . .. . .. . . . . .. . . . . . .. ................. .. . .... . . .... . ... . .. . . ........... .. . . . . . . ........ ... ......... . ............ . .... ...... . ... . . .... . . .. . .... . . . . . .
lowQualScore : 0 0 2 2 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 00 3 000000 7 33 0 33 3 7 7 3 00 0 3 3 3 3 66 22222222222222222 22 0 3333 0 2 0000 5 000 6 00 8 0 88888888888 88 0 8 0 6 0 0 66666666 000 000000000 0 222222222222 0 3333 777777 3 333 5 0 5555 0 0 00 0 0000 0 0 7 0 3 0
consensus : AAAAATTTCTTCCAATTGACAGGT-GGCTCGGAGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATGTA-AAGATATGTACA----CACACAATAAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATTN--------CACACTAAATATCATCGAATATTGAG------------GTAAAAA-AAAACAAAACAAAAACACC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
Reference ( family-1437 ) : AAAAATTTCTTCCAATTG-CAGGT-GGCTCGGAGGTTGAATCTCGTGTAAATATACATGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTGTTACTTTTTTTTAGCAACATAAANCTCCATCAGAGGTCATNTCAGTAAATATTTCTCTTGTANNATGAANACCCATTATAATTGTGTGAATATATA-----TATGTACA----CACACAATAAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTNTAACACTCA-T-------ATAT---AACATTN--------CACACTAAATATCATCGAATATCGAG------------GTNAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTNAGATATGAAAAAAGGGGAGGGGGTNAGCAAGGAGTGTT
gi|1 : AATATATAGAAGATATGAACATATGCACACAATAAATTTAAAACAGGGGTTCG-T---TGGTCAT--C--AGCTATTTTGCT---AAGCTCACCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCA-T--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTAAAA-------------AAATA------GTT------ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAAAA--GAAAGAAGGTAAGCAAGGAATGTT
gi|11 : gaaatcatgtcagctttAAATATATCTTCCAATGG-TATATTGAC----AGATTGAATTTCGTGTAAATATACATGctgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|16 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatAAAAATTTCTTCCAATTGACAGGT-GGCTCGGAGGTTGAATCTCGTG-AAATAT
gi|18 : ggtgaacggcgcggatctgacatatgttttgtgaggtATGTA-----TAC-TATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---A
gi|2 : AAAAATTTCTTCCAATTGACAGGT-GGCTCAGAGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTAAAAGATATGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATT-------ATAT---AACATTA--------CACACTAAATATCATCGAATATTGAG------------GTAA----AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATAT-AAAAAAGGGGAGGGGATTAGCAATGCGTGTTa
gi|3 : TTTAGCAACATAAA------TCAGAGGTTATGTCAGTAAA---TTCTCTT-TATTATAAATA--CATT-TAAT-------ATATATA-----C-TATACA----CACACAA------TAAAACATAGAC----TCGTTGGAC----ATAAGCTATTTTTCTAACACCCCC
gi|4 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTGAATG------------------------------AATTTAAAACAGCGGCTCG-TTA----AGAT--ATAAGCTATTTTGCT---ACCCCCAAC--CC-----------------------TTAAA-CAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCA-T--------TAT---AACATTT--------CACACTAAATATCATCGAATcccc
gi|5 : gcttgtatttattgtttactttgAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|6 : gAAAAATTTCTTCCAATTG-CAGGT-GGCTCGGAGGTTGAATCTCATGTGAATATACATGTATActgcataccactcaagcctgtgatttaaaatttacgtacatgcatgatgtatgttttgcggtgatctgaaggaagttgtattcgtcttacatatgaaatagtaaagtatatgccaataggctgttaactgcaaggcataggtgcatccgattttggttaggattgcatggtacatacattaaactatgttggcacttaggcctattatttttattatcttaaatt
gi|7 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagCC---ACCCACACA--CCATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCA-TA------ACATTGAAATATTT--------CACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGTAAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAAttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|8 : cTTTAAAACAGCGGCTCGATCGTTAGACAT--G--AGCTCTTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCA-TTACTCGTATAT---AACATTG--------CACACTAAATATCATCGAATATTGAG------------GTgcgcttcaaaactaaata
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|17 ): GTGGATCCGAGCAGAAGGAGGTTGAATCTCATATATATATTGCAGATTTTCTTGAATGTTGTGTTGAAGTTTCAATAA
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 4444444 11 1 444444444444444444 1111 1111 111 11 33333333333 11 1 44444444 111 22222222 555555555555555 1 333333 111 1 2222 2222 1 1
lowQualScore : 3 9 0 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 7 88 7 5555555 88 7 1 3 6 7 7 7 3 4 888888888888888888 22 1 7777 1 3 4444 2 000 0 11 0 1 55555555555 00 8 3 8 0 8 44444444 444 99999999 1 222222222222222 3 7 222222 7 000 5 1 3333 2 1 22 1 3333 5 1 2 7
lowQualScore : . . . . ................................................................................................................................ . . .. . ....... .. . . . . . . . . . .................. .. . .... . . .... . ... . .. . . ........... .. . . . . . ........ ... ........ . ............... . . ...... . ... . . .... . . .. . .... . . . .
lowQualScore : 2 2 0 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 33 3 7777777 33 3 0 3 7 3 3 3 2 2 888888888888888888 66 0 3333 0 2 0000 5 000 6 00 8 0 88888888888 88 0 8 0 6 0 66666666 000 00000000 0 222222222222222 3 3 333333 3 000 5 0 5555 5 0 00 0 0000 0 0 0 3
consensus : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACAT--------TTCACACTAAATATCATCGAATATTGAG------------GT-AAAA-AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
Reference ( family-1437 ) : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATGTA-AA-GATATGTACA----CACACAATAAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACAT--------TNCACACTAAATATCATCGAATATTGAG------------GTAAAAA-AAAACAAAACAAAAACACC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|1 : AATATATAGAA-GATATGAACATATGCACACAATAAATTTAAAACAGGGGTTCG-T---TGGTCAT--C--AGCTATTTTGCT---AAGCTCACCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCA-T--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTAAAA-AAA---------------T---AGTT------ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAAAA--GAAAGAAGGTAAGCAAGGAATGTT
gi|11 : gaaatcatgtcagctttAAATATATCTTCCAAT-----GGTATATTGACAGATTGAATTTCGTGTAAATATACATGctgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|16 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatAAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTG-AAATAT
gi|18 : ggtgaacggcgcggatctgacatatgttttgtgaggtTATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---A
gi|2 : atgtatacAAAAATTTCTTCCAATTGACAGGTGGCTCAG-AGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTA-AAAGATATGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATT-------ATAT---AACAT--------TACACACTAAATATCATCGAATATTGAG------------GT---AA-AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATAT-AAAAAAGGGGAGGGGATTAGCAATGCGTGTTa
gi|3 : TTTAGCAACATAAA------TCAGAGGTTATGTCAGTAAA---TTCTCTT-TATTAT--AAATACATT-TAAT-------ATATATA-------CTATACA----CACACAA------TAAAACATAGAC----TCGTTGGAC----ATAAGCTATTTTTCTAACACCCCC
gi|4 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTGAA-------------------------------TGAATTTAAAACAGCGGCTCG-TTA----AGAT--ATAAGCTATTTTGCT---ACCCCCAAC--CC-----------------------TTAAA-CAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCA-T--------TAT---AACAT--------TTCACACTAAATATCATCGAATcccc
gi|5 : gcttgtatttattgtttactttgAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|6 : gAAAAATTTCTTCCAATTG-CAGGTGGCTCGG-AGGTTGAATCTCATGTGAATATACATGTATActgcataccactcaagcctgtgatttaaaatttacgtacatgcatgatgtatgttttgcggtgatctgaaggaagttgtattcgtcttacatatgaaatagtaaagtatatgccaataggctgttaactgcaaggcataggtgcatccgattttggttaggattgcatggtacatacattaaactatgttggcacttaggcctattatttttattatcttaaatt
gi|7 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagCC---ACCCACACA--CCATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCA-TA------ACATTGAAATAT--------TTCACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGTAAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAAttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|8 : cTTTAAAACAGCGGCTCGATCGTTAGACAT--G--AGCTCTTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCA-TTACTCGTATAT---AACAT--------TGCACACTAAATATCATCGAATATTGAG------------GTgcgcttcaaaactaaata
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|17 ): GTGGATCCGAGCAGAAGGAGGTTGAATCTCATATATATATTGCAGATTTTCTTGAATGTTGTGTTGAAGTTTCAATAA
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 4444444 11 1 444444444444444444 1111 1111 111 11 33333333333 11 1 44444444 111 22222222 555555555555555 11 333333 111 1 2222 2222 1 1
lowQualScore : 3 9 0 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 7 88 7 5555555 88 7 1 3 6 7 7 7 3 0 888888888888888888 77 1 7777 1 3 4444 2 000 0 11 0 1 55555555555 00 8 3 8 0 8 44444444 444 99999999 1 222222222222222 88 6 000000 7 000 5 1 3333 2 1 22 1 3333 5 1 2 7
lowQualScore : . . . . ................................................................................................................................ . . .. . ....... .. . . . . . . . . . .................. .. . .... . . .... . ... . .. . . ........... .. . . . . . ........ ... ........ . ............... .. . ...... . ... . . .... . . .. . .... . . . .
lowQualScore : 2 2 0 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 33 3 7777777 33 3 0 3 7 3 3 3 2 8 888888888888888888 00 0 3333 0 2 0000 5 000 6 00 8 0 88888888888 88 0 8 0 6 0 66666666 000 00000000 0 222222222222222 33 7 333333 3 000 5 0 5555 5 0 00 0 0000 0 0 0 3
consensus : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACAT--------TTCACACTAAATATCATCGAATATTGAG------------GT-AAA--AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
Reference ( family-1437 ) : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACAT--------TTCACACTAAATATCATCGAATATTGAG------------GTAAAA--AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|1 : AATATATAGAA-GATATGAACATATGCACACAATAAATTTAAAACAGGGGTTCG-T---TGGTCAT--C--AGCTATTTTGCT---AAGCTCACCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCA-T--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTAAA--AAAA--------------T---AGTT------ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAAAA--GAAAGAAGGTAAGCAAGGAATGTT
gi|11 : gaaatcatgtcagctttAAATATATCTTCCAAT-----GGTATATTGACAGATTGAATTTCGTGTAAATATACATGctgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|16 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatAAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTG-AAATAT
gi|18 : ggtgaacggcgcggatctgacatatgttttgtgaggtTATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---A
gi|2 : atgtatacAAAAATTTCTTCCAATTGACAGGTGGCTCAG-AGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTA-AAAGATATGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATT-------ATAT---AACAT--------TACACACTAAATATCATCGAATATTGAG------------GT--AA--AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATAT-AAAAAAGGGGAGGGGATTAGCAATGCGTGTTa
gi|3 : TTTAGCAACATAAA------TCAGAGGTTATGTCAGTAAA---TTCTCTT-TATTAT--AAATACATT-TAAT-------ATATATA-------CTATACA----CACACAA------TAAAACATAGAC----TCGTTGGAC----ATAAGCTATTTTTCTAACACCCCC
gi|4 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTGAAT-------------------------------GAATTTAAAACAGCGGCTCG-TTA----AGAT--ATAAGCTATTTTGCT---ACCCCCAAC--CC-----------------------TTAAA-CAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCA-T--------TAT---AACAT--------TTCACACTAAATATCATCGAATcccc
gi|5 : gcttgtatttattgtttactttgAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|6 : gAAAAATTTCTTCCAATTG-CAGGTGGCTCGG-AGGTTGAATCTCATGTGAATATACATGTATActgcataccactcaagcctgtgatttaaaatttacgtacatgcatgatgtatgttttgcggtgatctgaaggaagttgtattcgtcttacatatgaaatagtaaagtatatgccaataggctgttaactgcaaggcataggtgcatccgattttggttaggattgcatggtacatacattaaactatgttggcacttaggcctattatttttattatcttaaatt
gi|7 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagCC---ACCCACACA--CCATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCA-TA------ACATTGAAATAT--------TTCACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGTAAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAAttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|8 : cTTTAAAACAGCGGCTCGATCGTTAGACAT--G--AGCTCTTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCA-TTACTCGTATAT---AACAT--------TGCACACTAAATATCATCGAATATTGAG------------GTgcgcttcaaaactaaata
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|17 ): GTGGATCCGAGCAGAAGGAGGTTGAATCTCATATATATATTGCAGATTTTCTTGAATGTTGTGTTGAAGTTTCAATAA
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 4444444 11 1 444444444444444444 1111 1111 111 11 33333333333 11 1 44444444 111 333333333 555555555555555555555 333333 111 1 2222 2222 1 1
lowQualScore : 3 9 0 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 7 88 7 5555555 88 7 1 3 6 7 7 7 3 0 888888888888888888 77 1 7777 1 3 4444 2 000 0 11 0 1 55555555555 00 8 3 8 0 8 44444444 444 000000000 888888888888888888888 7 333333 7 000 5 1 3333 2 1 22 1 3333 5 1 2 7
lowQualScore : . . . . ................................................................................................................................ . . .. . ....... .. . . . . . . . . . .................. .. . .... . . .... . ... . .. . . ........... .. . . . . . ........ ... ......... ..................... . ...... . ... . . .... . . .. . .... . . . .
lowQualScore : 2 2 0 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 33 3 7777777 33 3 0 3 7 3 3 3 2 8 888888888888888888 00 0 3333 0 2 0000 5 000 6 00 8 0 88888888888 88 0 8 0 6 0 66666666 000 000000000 999999999999999999999 3 333333 3 000 5 0 5555 5 0 00 0 0000 0 0 0 3
consensus : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATT--------TCACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
Reference ( family-1437 ) : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATT--------TCACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|1 : AATATATAGAA-GATATGAACATATGCACACAATAAATTTAAAACAGGGGTTCG-T---TGGTCAT--C--AGCTATTTTGCT---AAGCTCACCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCA-T--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTAAA---AAAATA-----------------GTT------ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAAAA--GAAAGAAGGTAAGCAAGGAATGTT
gi|11 : gaaatcatgtcagctttAAATATATCTTCCAAT-----GGTATATTGACAGATTGAATTTCGTGTAAATATACATGctgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|16 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatAAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTG-AAATAT
gi|18 : ggtgaacggcgcggatctgacatatgttttgtgaggtTATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---A
gi|2 : atgtatacAAAAATTTCTTCCAATTGACAGGTGGCTCAG-AGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTA-AAAGATATGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATT-------ATAT---AACATT--------ACACACTAAATATCATCGAATATTGAG------------GT--AA---AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATAT-AAAAAAGGGGAGGGGATTAGCAATGCGTGTTa
gi|3 : TTTAGCAACATAAA------TCAGAGGTTATGTCAGTAAA---TTCTCTT-TATTAT--AAATACATT-TAAT-------ATATATA-------CTATACA----CACACAA------TAAAACATAGAC----TCGTTGGAC----ATAAGCTATTTTTCTAACACCCCC
gi|4 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTGAAT-------------------------------GAATTTAAAACAGCGGCTCG-TTA----AGAT--ATAAGCTATTTTGCT---ACCCCCAAC--CC-----------------------TTAAA-CAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCA-T--------TAT---AACATT--------TCACACTAAATATCATCGAATcccc
gi|5 : gcttgtatttattgtttactttgAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|6 : gAAAAATTTCTTCCAATTG-CAGGTGGCTCGG-AGGTTGAATCTCATGTGAATATACATGTATActgcataccactcaagcctgtgatttaaaatttacgtacatgcatgatgtatgttttgcggtgatctgaaggaagttgtattcgtcttacatatgaaatagtaaagtatatgccaataggctgttaactgcaaggcataggtgcatccgattttggttaggattgcatggtacatacattaaactatgttggcacttaggcctattatttttattatcttaaatt
gi|7 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagCC---ACCCACACA--CCATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCA-TA------ACATTGAAATATT--------TCACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGT-AAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAAttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|8 : cTTTAAAACAGCGGCTCGATCGTTAGACAT--G--AGCTCTTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCA-TTACTCGTATAT---AACATT--------GCACACTAAATATCATCGAATATTGAG------------GT-gcgcttcaaaactaaata
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|17 ): GTGGATCCGAGCAGAAGGAGGTTGAATCTCATATATATATTGCAGATTTTCTTGAATGTTGTGTTGAAGTTTCAATAA
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 4444444 11 1 444444444444444444 1111 1111 111 11 33333333333 11 1 44444444 111 333333333 555555555555555555555 333333 111 1 2222 2222 1 1
lowQualScore : 3 9 0 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 7 88 7 5555555 88 7 1 3 6 7 7 7 3 0 888888888888888888 77 1 7777 1 3 4444 2 000 0 11 0 1 55555555555 00 8 3 8 0 8 44444444 444 000000000 888888888888888888888 7 333333 7 000 5 1 3333 2 1 22 1 3333 5 1 2 7
lowQualScore : . . . . ................................................................................................................................ . . .. . ....... .. . . . . . . . . . .................. .. . .... . . .... . ... . .. . . ........... .. . . . . . ........ ... ......... ..................... . ...... . ... . . .... . . .. . .... . . . .
lowQualScore : 2 2 0 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 33 3 7777777 33 3 0 3 7 3 3 3 2 8 888888888888888888 00 0 3333 0 2 0000 5 000 6 00 8 0 88888888888 88 0 8 0 6 0 66666666 000 000000000 999999999999999999999 3 333333 3 000 5 0 5555 5 0 00 0 0000 0 0 0 3
consensus : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATT--------TCACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
Reference ( family-1437 ) : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATT--------TCACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|1 : AATATATAGAA-GATATGAACATATGCACACAATAAATTTAAAACAGGGGTTCG-T---TGGTCAT--C--AGCTATTTTGCT---AAGCTCACCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCA-T--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTAAA---AAAATA-----------------GTT------ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAAAA--GAAAGAAGGTAAGCAAGGAATGTT
gi|11 : gaaatcatgtcagctttAAATATATCTTCCAAT-----GGTATATTGACAGATTGAATTTCGTGTAAATATACATGctgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|16 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatAAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTG-AAATAT
gi|18 : ggtgaacggcgcggatctgacatatgttttgtgaggtTATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---A
gi|2 : atgtatacAAAAATTTCTTCCAATTGACAGGTGGCTCAG-AGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTA-AAAGATATGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATT-------ATAT---AACATT--------ACACACTAAATATCATCGAATATTGAG------------GT--AA---AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATAT-AAAAAAGGGGAGGGGATTAGCAATGCGTGTTa
gi|3 : TTTAGCAACATAAA------TCAGAGGTTATGTCAGTAAA---TTCTCTT-TATTAT--AAATACATT-TAAT-------ATATATA-------CTATACA----CACACAA------TAAAACATAGAC----TCGTTGGAC----ATAAGCTATTTTTCTAACACCCCC
gi|4 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTGAAT-------------------------------GAATTTAAAACAGCGGCTCG-TTA----AGAT--ATAAGCTATTTTGCT---ACCCCCAAC--CC-----------------------TTAAA-CAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCA-T--------TAT---AACATT--------TCACACTAAATATCATCGAATcccc
gi|5 : gcttgtatttattgtttactttgAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|6 : gAAAAATTTCTTCCAATTG-CAGGTGGCTCGG-AGGTTGAATCTCATGTGAATATACATGTATActgcataccactcaagcctgtgatttaaaatttacgtacatgcatgatgtatgttttgcggtgatctgaaggaagttgtattcgtcttacatatgaaatagtaaagtatatgccaataggctgttaactgcaaggcataggtgcatccgattttggttaggattgcatggtacatacattaaactatgttggcacttaggcctattatttttattatcttaaatt
gi|7 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagCC---ACCCACACA--CCATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCA-TA------ACATTGAAATATT--------TCACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGT-AAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAAttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|8 : cTTTAAAACAGCGGCTCGATCGTTAGACAT--G--AGCTCTTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCA-TTACTCGTATAT---AACATT--------GCACACTAAATATCATCGAATATTGAG------------GT-gcgcttcaaaactaaata
blockSeqs : T A . T T T GC A GCTCCAT AG T C G G A A T A AAAGATATGTACA TA A TCGA C T GCAT G AAC . T TT AC A A A A T TACTCGTA TGA A ATATTTACAAAAGTAAAAAC A CCTTG T TTC . G AGTC C C TT T . C G A A
blockSeqs : T A . T T . . T . . T . . . A . A CTATACA TG C TCGA C T AT T . . T T AC . A . A . AA . T GTAA A ACC . TTT . A
blockSeqs : T . . . . . G A TCG C T AT G . . T T C . A . . . A . T
blockSeqs : . C . T T AT G . . . . A . . . . . . . G
blockSeqs : C . C . G . .
blockSeqs : .
blockSeqCons : TCG* AT** ** T********** A******* N********
originalCons : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATT--------TCACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
finalCons : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACATAT--AAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAAT----------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-TA-------TAT---AACATTN--------CACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|17 ): GTGGATCCGAGCAGAAGGAGGTTGAATCTCATATATATATTGCAGATTTTCTTGAATGTTGTGTTGAAGTTTCAATAA
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 4444444 11 1 444444444444444444 1111 1111 111 11 33333333333 11 1 44444444 111 333333333 555555555555555555555 333333 111 1 2222 2222 1 1
lowQualScore : 3 9 0 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 7 88 7 5555555 88 7 1 3 6 7 7 7 3 0 888888888888888888 77 1 7777 1 3 4444 2 000 0 11 0 1 55555555555 00 8 3 8 0 8 44444444 444 000000000 888888888888888888888 7 333333 7 000 5 1 3333 2 1 22 1 3333 5 1 2 7
lowQualScore : . . . . ................................................................................................................................ . . .. . ....... .. . . . . . . . . . .................. .. . .... . . .... . ... . .. . . ........... .. . . . . . ........ ... ......... ..................... . ...... . ... . . .... . . .. . .... . . . .
lowQualScore : 2 2 0 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 33 3 7777777 33 3 0 3 7 3 3 3 2 8 888888888888888888 00 0 3333 0 2 0000 5 000 6 00 8 0 88888888888 88 0 8 0 6 0 66666666 000 000000000 999999999999999999999 3 333333 3 000 5 0 5555 5 0 00 0 0000 0 0 0 3
consensus : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATTN--------CACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
Reference ( family-1437 ) : AAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCNTTGTTACTTTTTTTTA--AACATAAA------TCAAAAATCATCTC--TAAATATTTTTNTT-TAAAATGAAGATCCATTATAATTGTGTGAATATATA-AA-GATATGTACA----CACACAATGAATTTAAAACAGNGGCTCG-TCGTTGGACAT--ATAAGCTATTTTGCT---ACCCCCAAC--CCATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCA-T-------ATAT---AACATTN--------CACACTAAATATCATCGAATATTGAG------------GT-AAA---AAAACAAAACAAAAAC-CC---AGTTTTCAAAATATAGTTGTGATGANGAGTCTTAAAAGTCCCGGCGTTTCAAAATTGAATAAAANTGNNGNTTAACCCGGCAATAAAAAGTTCATTTCGAACCCATTNAAATATGAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|1 : AATATATAGAA-GATATGAACATATGCACACAATAAATTTAAAACAGGGGTTCG-T---TGGTCAT--C--AGCTATTTTGCT---AAGCTCACCTCCCATCCCCACAA-TCCGCCGAGTTATTAAAA-AC-GAAATCTGACTGTTGGGTAAATTGCATTTTGTTTTTGATTT-TAAGATCCTTGCAACACTCA-T--------TAT---AACATTGAAATAGTTCACATCAAATATCATCAAATATCGAG------------ATTAAA---AAAATA-----------------GTT------ATATAGTTGTGATGATGAATCTTAAA----CAAGCGTTTCAAAATTGAATAAAAATGAAGATTAACCCGGCAATAAAAAGTTCATTTCGAA-CCATTTAGATATGAAAAA--GAAAGAAGGTAAGCAAGGAATGTT
gi|11 : gaaatcatgtcagctttAAATATATCTTCCAAT-----GGTATATTGACAGATTGAATTTCGTGTAAATATACATGctgcataccactctaacttgtgatttaaaatatgtgtaaagatctatatgtttgcggtgatctgaaggaacttgtattcgtcttacatataaaatagtaaagtacatgccaataggtttgcttttctaacgataagaccttttctgttagtacatggtaggtacatcgttttactggtacacacatccgattttggctaggatttcatcgtactaacatcaaactatgccggtacctacatcatcttcatttttaaaatatcatatatagtgttattttacgttcttttattaatttctgtcgcagcgagcattaagatatacattatcttaaagttgaaag
gi|16 : tctttgtgccagatgtataatgttacacagtatatatgctcgcgcggcgcagatctgacagtatgtttagagaaatAAAAATTTCTTCCAATTGACAGGTGGCTCGG-AGGTTGAATCTCGTG-AAATAT
gi|18 : ggtgaacggcgcggatctgacatatgttttgtgaggtTATA----CACACAATAGATTTAATACATAGGC----TCGTTGGACAT--ATAAGCTATTTT-CT---A
gi|2 : atgtatacAAAAATTTCTTCCAATTGACAGGTGGCTCAG-AGGTTGAATCTCATGTAAATATACATGTATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTTGCATGTAAATTTCATTGTTACTTTTTTT-A--AACATGAA--------AAAAATCATCTC--TAAATATTTTTGTT-TAAAATGAAGATCCATTAT--TTGTGTGAATATGTA-AAAGATATGTACA----CACACAATGAATTTAAAACAGCGGCTCGATCGTTAGACATGCATAAGCTATTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CAAGATCTTTGTAACACTCATT-------ATAT---AACATTA--------CACACTAAATATCATCGAATATTGAG------------GT--AA---AAAACAAAACAAAAAC-CCTTGAG-TTTCAAAAT-TAGTTGTGATGAGGAGTCTTAAAAGTCCCGGTGTTTCAAAATTAAATAAAACTGTTGTTTAACCC----ATAAAAAGTTCATTTCGAACCCATTGAAATAT-AAAAAAGGGGAGGGGATTAGCAATGCGTGTTa
gi|3 : TTTAGCAACATAAA------TCAGAGGTTATGTCAGTAAA---TTCTCTT-TATTAT--AAATACATT-TAAT-------ATATATA-------CTATACA----CACACAA------TAAAACATAGAC----TCGTTGGAC----ATAAGCTATTTTTCTAACACCCCC
gi|4 : tcttgtctctcgatcacgataatatttttcataagttattaaaaagcgtaatttattttcaatggtgttatagaactgcatttagtgccttatgctatgatgtatttcctatttcagggtcttatctcaatagaatttaaaatatacgatcagtctcaccagctgaatcataaaataattcgtccatcaatatctaacgagccaatattaattccaatgcgaaagcctactttttcatttgtagtgtatgcctgtcctttctgcatgcacctatattatgtaaataTTCTTTGTTACTTTTTTTTA--AAC-TAAAGCTCCATCAAAAATCATCTC--TAAATATTTTTTTTGTAAAATGAAGATCCATTATAATTGTGTGAAT-------------------------------GAATTTAAAACAGCGGCTCG-TTA----AGAT--ATAAGCTATTTTGCT---ACCCCCAAC--CC-----------------------TTAAA-CAA-GTAATCTGACTGTTGGGCGAACTGCATTTTGTTTTTAATTT-CA--ATCTTTTTAAGACTCA-T--------TAT---AACATTT--------CACACTAAATATCATCGAATcccc
gi|5 : gcttgtatttattgtttactttgAAATATAAAAAAAGGGGAGGGGGTTAGCAAGGAGTGTT
gi|6 : gAAAAATTTCTTCCAATTG-CAGGTGGCTCGG-AGGTTGAATCTCATGTGAATATACATGTATActgcataccactcaagcctgtgatttaaaatttacgtacatgcatgatgtatgttttgcggtgatctgaaggaagttgtattcgtcttacatatgaaatagtaaagtatatgccaataggctgttaactgcaaggcataggtgcatccgattttggttaggattgcatggtacatacattaaactatgttggcacttaggcctattatttttattatcttaaatt
gi|7 : tttttttcgtgtcagatacgtcataccgtatacgttcgctataatagctgaacggcgcggatctgacatattatattaattatatgttttgtgagCC---ACCCACACA--CCATCCCCTCAATT---------TATCAAAA-AA-ATAATCTGACTGGTGGGCGAACTGCATTTTGTTTTTAATTT-TAAGATCTTCCTAACACTCA-TA------ACATTGAAATATTT--------CACAGTAAATGTCATCGAATATTGAGATATTTACAAAAGT-AAAAACAAAACAAAACAAAAACACC---AGTTTTTAAAAttttgcagattttcttgaatgttatttaagtttcaatactgtcttaaaaaattaattctttatacacagagcgaaactttaaatggatgtatacatgtt
gi|8 : cTTTAAAACAGCGGCTCGATCGTTAGACAT--G--AGCTCTTTTGCT---ACCCCCAAC--CTATCCCCTCAA-T---------TATTAAAACAAAGTAATCTGACTGTTTGGCGAACTGCATTTTGTTTTT--TGTACA-------TGTAACACTCA-TTACTCGTATAT---AACATTG--------CACACTAAATATCATCGAATATTGAG------------GT-gcgcttcaaaactaaata
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTTTTCCCTTCGTTTCAGAAACGTCCTACTGCATCTGCTTGCTATAGGTAAACGGCGCGGATCTAACATTTATGTTTGCAATTGATTGGTGGTTCCAAGCAGATGGAGATTGATTTTTGCAGATTGTCTTGTGTGATATGTTGAAGTTTCAATCACTGTTGTAAGAGATAACTT
Unaligned ( gi|10 ): GGTACCTACATCATCTTCATTTTTATTAGCCTATATCGAATATAGTATTTATTTTACGTTCTTTTATTAATTTCTGTCGAAGCGAGCATTAAGACATACATTATCTGCAAGTTGAAAGAAAAACTGAAACATTAA
Unaligned ( gi|12 ): CTGTCCTTTCTGCACCTTTAATATAGCAACGTAACTTCAGAGGCAATGTCAGAGAATTTTTTAGTATAAATACAGGTATATTAAATATATATTTACATATTGCAAACATAGAATAAATATAAA
Unaligned ( gi|13 ): AAAAATGATATAAGCAAGGTGTTTTCTACGACTCGATCCTGTGATTTACAAAATGTGTATATATGTTTTGGGGTGATTTTGCATTTGTCTTACATATAAAATA
Unaligned ( gi|14 ): GCAGCGAGCATTAAGACATACATTGTCTAAAAGTTGAAAGAAAAATGACACATTTTAAAAGCACCTCTTTGACTAAACGGATGTAAACACTCGAACCGC
Unaligned ( gi|15 ): CCAATGCGGAAAGCTAACCCTTTTTCTTGTTTCGACTGTCCTTTCTACACCTTTAAGATAGCAACACAACTTCAGAGGCAATGTCAAGGAATTCT
Unaligned ( gi|17 ): GTGGATCCGAGCAGAAGGAGGTTGAATCTCATATATATATTGCAGATTTTCTTGAATGTTGTGTTGAAGTTTCAATAA
Unaligned ( gi|19 ): ACGTCATACCGTATACGTTCGCTATATAGGTGAA