lowQualScore : 11111111 33333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 33 33333 2 22 33 1111 111 333333 222 2222 111 4444444 555555555555 1111 44444 11 333 1 1 22 00000000 333333 3333333333333 33333333 2 11 555 66666666666666 33333 1 22 1111 1 111 111 4444444 11 333333333 44444444 4 1 3 11 4444444444444 22 333 999999999999999999999999999999 1 1 77777 111 1 44444 1 1 2222 222222222 44444444 1 555555555555555555555 111 111 1 1 6666 1 1 4444444 4 88888888888888888888888 1 1 1 55555555555555555555555555555555555555555555 55 777 444444 1 22 22 333333333333333333333333333333333333333333333333333333333333333333333333333333333 1
lowQualScore : 6666 11 1 5 5 44444 5 4 4 2 66 1 66 66 2222 000 8888 333333 999 0 6 3333 8 555 44 8888888 4 555555555555 4444 6 88888 33 000 3 3 00 55555555 6 222222 9999999999999 33333333 3 88 111 66666666666666 88888 0 8 999 6 55 6 0000 5 555 111 9999999 22 333333333 55555555 3 0 0 0 6 99 8888888888888 3 7 00 333 6 8 6 8 333333333333333333333333333333 7 2 3 00000 777 3 33333 3 3 3 6 3333 999999999 11111111 3 7 888888888888888888888 777 111 6 5 7777 5 5 9999999 0 33333333333333333333333 5 5 6 7 66666666666666666666666666666666666666666666 55 000 333333 7 66 6 77 555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 6 5
lowQualScore : .... .. . . . ..... . . . . .. . .. .. .... ... .... ...... ... . . .... . ... .. ....... . ............ .... . ..... .. ... . . .. ........ . ...... ............. ........ . .. ... .............. ..... . . ... . .. . .... . ... ... ....... .. ......... ........ . . . . . .. ............. . . .. ... . . . . .............................. . . . ..... ... . ..... . . . . .... ......... ........ . . ..................... ... ... . . .... . . ....... . ....................... . . . . ............................................ .. ... ...... . .. . .. ................................................................................. . . .
lowQualScore : 2222 22 7 7 7 77777 0 4 4 0 99 2 11 44 1111 000 6666 777777 444 8 8 4444 6 444 88 8888888 0 222222222222 8888 0 77777 33 000 3 3 00 33333333 7 777777 0000000000000 33333333 7 33 000 00000000000000 88888 5 0 666 0 88 7 0000 5 888 555 0000000 55 555555555 00000000 2 0 0 0 0 66 7777777777777 7 3 77 555 0 0 0 0 999999999999999999999999999999 3 3 3 00000 777 3 33333 7 3 3 0 7777 777777777 77777777 3 7 777777777777777777777 555 000 0 5 0000 0 0 0000000 0 00000000000000000000000 0 0 0 0 00000000000000000000000000000000000000000000 00 000 000000 0 00 0 55 555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0
consensus : GTTGCACATCT-C-TAGTTTA-CATAAGTACAGC-T-CAGTA-GGTTGA-TCCACGGA-TCAC-GTAAGCCG--GG-TTTAAAT-GCCGGGT-GAGT----CGGA---GTTAC--CTGAGTAGTA--AA-TTCCGTTGCA-CGCTTCGAAA-CTAAAACCAAAGCTTACCTGATCC------AAACTNTTGAG-C-GTNAA--A-ATAG-A--AGGGATGTCGAAAAAT---ATGCACGTCATTTTCATTGG-AATT-AATTGATT-TTGGG-GAAGGAG--TA----TAAGGATGGT---TTGC-A-GCCT----C-AAAA---G-CT-AAAATG-AACTTAAGGATAT--CATTGAGAAT-AAACAAAA------C---A---GCAAAATAATTT-T---AAAAA-TCAGAA-TATGAGACAATTACGTTT-GAATTAAATGTCATCCTTTTAA--G-GAACTTCTTAATGATTCTTG-AAACAAT-GCATATN-----GTGTACCCAAA------A--CAATT-ATC-CATTTACTGAT-AAC-AATTTTCGAGTGAAATATAATAGC--AAAGTT-ANTAGAAATCA-AATTAGTAAGCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAGACTGGCA-TTACG-CATGGCG--TTTAGTTATATTAA----TATAT-A---ATACAAGGAGTTT-GCGGT---TTAAT-T-AATT-TGCAA-C-ATTGAATCNTCC-AA-ACGA-AC-CACAA-TC-A-AT-ATCTA-G------AT-AAAAANAA-C-ACAATCTTTGTAA--GTAGGA---ATTT-A-TTAATAAAAT-TATGTATCATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATTT-TTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTGAAAA--AATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTGGTGTCTTTACAAATTTCTTTGATTTTCTTAATCAATTCTCTTAACAATCTCAAACAGATCCACTGCCATNC--AAATAAGACT---CCNATCATTCCTCCATGAGAACGTGAA
Reference ( gi|1 ) : GTTGCATATC--C-TAGTTTATCATAAGTACAGC-T-CAGTAGGGTTGA-TCCACGGA-TCAC-GCAAGCCG--GGGTTTAAATTGCCGGG--GAGT----CGGA---GTTAC--CTGAGTAGTA--AA-TTCCGTTGAATCGCTTCAAAATCTAAAACCAAAGCTTACCTGATCC------TAACTTTTGAG-T-GTTAATTG-ATAG-A--AGGGATGTTGAAAAATTGCATGCACGTCGTTTTCATT-G-AATT-AATTGATT-TTGGG-GAAGGAGTCTACTCTTAAGGATGGT---TTGC-A-GCCC----C-AAAA---G-CTCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAAAA------C---A---GCAAAATAATTT-T---AAATA-TCAGAA-TATGAGACAATTACGTTTGGAATTAAATGTCATCCTTTTAA--G-GAACTTCTTAATGATTCTTG-AAACAGT-GCATA-A-----GTGTGCCCAAA------A--CAATTAATC-C-TTTACTGATGAAC-AA-TTTCGGGTGAATTATAATATCTAAAAGTT-ACTAGAAATCA-AATTAGTAAGTAAGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATAT-A---ATACAAGAAGTTT-GCG-----TTAAT-T-AATT-TGCAA-CTACTGAATCCTCC-AA-ACAA-AT-CACAA-TC-A-AT-ATCTA-G------AT-AAAAATAA-TTACAATC-CTGTTA--TTCGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAA--ATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGTG---TATTTAAACAAAAGGTTCATAAAT--TC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT-ATGTTTTTACAA--TTC---G---TTCTT---------TCT--ACAATCTCAAAC-CATCCACTG-CATCCCAAAATAA-ACGCAACCAATCATT-C-CCATAAAAACGTGAAT
gi|4 : GTTGCACATCT-C-TAATTTA-CACAAGTACAGC-T-CAGT--GGTTGA-TCCACGGA-TCAC-GTAAGCTG--GG-TTTAAAT-GCCGGGT-GAGT----CGGA---GTTAC--CTGAGTAGTA--A--TTCCGTTGCA-CGCTTCAAAA-CTAAA-CCAA-GCTTACCTGATCC------AAACTTTTGAG-C-GTGAA--A-ATAG-A--AGGGGTGTCGAAAAATTGTA----CGTCATTTTCATT-GGAATT-AATTGATT-TTGGG--AAGGAGTCTA-----AAGGATG-T---TTGC-AAGCCT----C-AAAA---AACTGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAA------C---AACAGCAAAATAATTT-TTTAAAAAA-TCAGA--TATGGGACAATTACGTTTG-AATTAAATGTCATCCTTTTAA--G-AAACTTCTTAATGATTCTTGAAAACA-T-GCATA-T-----GTGTATCCAAA------A--CAATT-ATC-CATTTACTGAT-AAC-AATTTTCGAGTGAAATATAATAGCTAAAAGTT-AATAGAAATCA-A
gi|2 : atggccgGTTGCACATCTTC-TAGTTTA-CATAAGTACAGCCT-CAGT--GGTTGA-TCCACGAAATCAC-GTACGCCGTGGGGTTTAAA-TGCCAGGT-GAGT----CGGA---GTTAC--C-GAGTAGT----A-TTCCGTTGCA-CGCTTC-AAACCT-AAACC-AAGCT--CCTGATCC------AAACTTTTGAG-CGGTTAA--A-ATAG-A--AGGGATGTCAAAAAAT----TGCACGTCA---TAATTGG-AATTAAATTGATT-TTGGG-GAAGGAG-ATA----TAAGGAT-GT---TTGCAA-GCCT----TAAAAA---G-CTTAAAATG-AACTTAAGGATAT--CAATGAGAT--AAACAAAA------CAATA---ACAAAATAAATT-TAA-AAAAA-TCAG-A-T-TGAGACAATTACGTTT-GAATAAAATGTCATCCTTTTAAAGG-AAACTTTTAAATGA-TCTTG-AAACTGTGGCATA-T-----GTGTA-CCAAA------A--CAATT-ATCACATTTACTGAT-AAC-AATTTTCGAGTGAAATATAA-----------T-ACTAG---TC--AATTAGT-AGTAAGAta
gi|10 : atggcgGTTGCATATCT-C-TAGTTCACGA-AAATACAAC-T-TAGC--GGTTGA-TCCATGGA-TCAC-GCAGACC---GGGTTTGAA-CGCCGGGT-GAGT----CGGA---AGTAC--CTGAGTAGT---AA-TCCTGTTGaagtaaaattgttttattatagtgacatgtggtccatgatttacaattacaacataataatatattgataataggcctttaaacacccagccatcggactataatgtccacttttaacatgataacaatgataataaaaaatagactgcattacgcatgacgtttagttatattaaaattaacaaggagttttgcggtttatttaatttgcaacattgaatcttccaaacgaacgcacaatccaatatctagataaaaaagatttaaaatctttgtaagtaggaatttatttaataatttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|14 : actgGCGTATC--TGTAGTTCA-CGTAAGTACAGC-T-CAGAA--CTTAA-TCCTCGAA-TCAC-GTAAGTCG--AGTTT
gi|3 : ggctggaaCACATCT-C-TATGTTA-CATAAGAACAGC-C-----AGG--TGA-TCCACGGA--CAC-GCAAGCCG--GG-TTTAAAT-GCCGGGTGGAGT----CGG----GTTAC--CTGAGTAGT---AA-TTCCGTTGCAC--CTTCAAAA-CT-AAACCAAAGCTCTTCTGATCC-------AATTATTGAG-C-GTGAA--A-ATAGAA--AGGGATGTCGAAAAAT---ATGCACGTCATTTTCATTGG-AATT-AATTGATTCTTGGGAGAACAAA---A----TAA-AATGGCCTGTTGC-A-AACCACATC-AAAAACGG-CT-AAAATG-AACTTAAGGATACGGCATTGAGAAT-AAACAAAACAACTCC---A---GCAAAATATTTA-A---AAAAA-TCAGAATTTTGAATTAAGTACGTTTTGA--TAAAT-TCAT-CTTTTAT--G-GAACTTCCTAATGA-TCT---AAGCAAT-GCATATA-----GTGTACCCAAATCTTTTAACCAATT-ATC-C-ATTACTG-T-AACAAA-TTTCGAGTAA--TATAATAGC--AAAGTGAATTAGAAATCATTATTAGTA--CAAGA
gi|8 : cgtgaAGCTTAC--TAAATACAAC-TTCAGCAGT-TTGAATCCGGTGA-TCACTATATTCTG--GTTTTTAAAT-GCCGTTT-GAGT----CGGAGTTGTTAC----GA-TAATATCAATTTCTATTGCA-CGCCTCGAAAACT-AAGCCTAGGCTTACTTattgttaattatattagatcgacattgttcatatttacattacaacaataatgatattataacaaagccttaaacaccccagctcacggaatcaaaagtttaaaatagactggcattacgcatgggtttagtaatatatatatatccatacaagaggtttgcggttttttaatatgttgtgcaacattgaatcctccaaaacgaaccacaattcaaaatctagataaaaaagaaacaatctttgtaagtaggaatttattattaaaattttgttcatttattagtgatgtcgatacagggggccatattccggaatat
gi|20 : GTACAGC-T-CAGT--GGTTGA-TCCACGGA-TCAC-Gtcagttgtacaaagagaggatattcgaaaaaagtgc
gi|16 : tGGTTGA-TCCACGGA-TCTC-GTAAGCCG--GG-TTTAAAT-GCCGGGT-GAAT----CGGA---GTTAC--CCGAGTAGT
gi|4 : tGGA-TCAG-GTAAGCTT--GG-TTTAGTTT--TGAA--GCGTGCAACGGA---ATTACTACTCAG--GTA--A--CTCCG---ACTCACC-CGGCATTTAAACCCA--GCTTACGTGATCCGTGGATCAACCACTGAGCT-G-TACTTGTGTAA-ATTAGAGATGT
gi|15 : atggccggttgcAAAATAATATAT---ATATAATCAGAA-TATGAGACAATTACGTTT-GAATCAAAT---AACCCTTTAA--C-GAAaaacttttgagcgtgaaaatagaaggggtgtcgaaaaattgtacgtcattttcattggaattaattgattttgggaaggagtctaaaggatgtttgcaagcctcaaaaaactgaaaatgaaacttaagaatatcattgagaataaacaaaacaacagcaaaataattttttaaaaaatcagatatgggacaattacgtttgaattaaatgtcatccttttaagaaacttcttaatgattcttgaaaacatgcatatgtgtatccaaaacaattatccatttactgataacaattttcgagtgaaatataatagctaaaagttaatagaaatcaata
gi|19 : gaA-TCAGAA-TATGAGACAATTGCGTTTG-AATTAAATGTCATCCTTTTAA--G-GAA
gi|9 : ACAATTACGTTT-GAATTAAATGTCATCCTTCTAA--GAAAATTTCTTAATGATTCTTT-AAACAAT-GCATATACATGTATGTACCCAAA------A--CAAT---TC-CATTTACTGAT-AAC-AATTTTCGAGTGAA
gi|2 : AAAATAGACTG-CA-TTACG-CATGACGTTT--AGTTATATTAAAA----T-T-A---A--CAAGGAGTTTTGCGGT---TTATT-T-AATT-TGCAA-C-ATTGAATCTTCC-AA-ACGA-ACGCACAA-TCCA-AT-ATCTA-G------AT-AAAAAAGATTTAAAATCTTTGTAA--GTAGGA---ATTT-ATTTAATAA
gi|3 : atggcggttgcacatcttctagtttacataagtacagcctcagtggttgatccacgaaatcacgtacgccgtggggtttaaatgccaggtgagtcggagttaccgagtagtattccgttgcacgcttcaaacctaaaccaagctcctgatccaaacttttgagcggttaaaatagaagggatgtcaaaaaattgcacgtcataattggaattaaattgattttggggaaggagatataaggatgtttgcaagccttaaaaagcttaaaatgaacttaaggatatcaatgagataaacaaaacaataacaaaataaatttaaaaaaatcagattgagacaattacgtttgaataaaatgtcatccttttaaaggaaacttttaaatgatcttgaaactgtggcatatgtgtaccaaaacaattatcacatttactgataacaattttcgagtgaaatataatactagtcaattagtagtaagaaagtaaaattgttttattatagtgacatgtggtccatgatttacaattacaacataataatatattgataataggcctttaaacacccagccatcggactataatgtccacttttaacatgataacaatgataataaAAAATAGACTGGCA-TTACG-CATGG-G--TTTAGTAATAT------ATATAT-ATCCATACAAGAGGTTT-GCGGTTTTTTAATAT-GTTG-TGCAA-C-ATTGAATCCTCCAAA-ACGA-AC-CACAATTC-A-AA-ATCTA-G------ATAAAAAAGAA---ACAATCTTTGTAA--GTAGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTAtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|17 : cgtgacacatctctatgttacataagaacagccaggtgatccacggacacgcaagccgggtttaaatgccgggtggagtcgggttacctgagtagtaattccgttgcaccttcaaaactaaaccaaagctcttctgatccaattattgagcgtgaaaatagaaagggatgtcgaaaaatatgcacgtcattttcattggaattaattgattcttgggagaacaaaataaaatggcctgttgcaaaccacatcaaaaacggctaaaatgaacttaaggatacggcattgagaataaacaaaacaactccagcaaaatatttaaaaaaatcagaattttgaattaagtacgttttgataaattcatcttttatggaacttcctaatgatctaagcaatgcatatagtgtacccaaatcttttaaccaattatccattactgtaacaaatttcgagtaatataatagcaaagtgaattagaaatcattattagtacaagaattgttaattatattagatcgacattgttcatatttacattacaacaataatgatattataacaaagccttaaacaccccagctcacggaatcaaaagtttAAAATAGACTGGCA-TTACG-CATGACG--TCTAGT-ATAATAAttagtgatgtcgatacagggggccatattccggaatat
gi|18 : tttacatgctattgacaattaaataAAAATAGAATGGCA-TTACG-CATGGCG--TTTAGTTATA-TAA
gi|5 : taacaatgaagtaTGGCACTTACGTCATGGCG--TTTAGT------------TATATAA---ATACAAG-AGTTT-GCGGT---TTAAT-TAAATTGTGCAATCT--TGGATCATCC-AACACGACAC-CATAA-AC-ATGTCATCTATGGAGGATAT-AAAAGTAA-C--CAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAATTTAT
gi|12 : tacatttatcataaacccaattattccatcttaactcgattaccaattttgggtggtaatgctatcaatactctagttaatgagacacaccaattcaacattagtagtaattaagagtaaatttgtttattatatgacattgtaccatattaatcacgaagtgtagacgaacgagaatagataatagtaagtaatagtttaagaccttaatgaacccagataaatgtacatcagccccatcggacctataattgtcctttaacgggtagaacagatgaagtaataaaatcacgataGA---ATTT-A-TTAATAACGTATATGTATCATTTAaaagatg
gi|6 : gtaagtttACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATTT-TTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTGAAAA--AATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTGGTGTCTTTACAAATTTC---GATTTTCTT---------TTTTAATAATTTT---C-GATCC-CTGCCATCT--AAATAAGACT---CCA--TATT-CTCCATGAGAAC-TGAAttagttgatgccgatgacaggggaccatattccggatat
gi|7 : aataaagcttgaaaagGT-GTGTCTTTACAA--TTCTTTA---TTCTTAATCAATTCTCT--ACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCC-CCATGAGAACGTGActt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AAGAAGGTAATTGATAAGTAATTGTATTATTATAGTGACATGTGTCATATGTCATAATTAAACATAAGTATCATAATAGCCTAACATCCCGG
Unaligned ( gi|13 ): ATAGCAAGTAAGCAAATCTTTTATCATAGTGACATGTGCGTTTAAGTGGAACATAATAATATATGGCATATGATAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 11 111 222222 11 1 1 11 2222 1 1 333333333 11 111 222 111 1 333333333 2 11 1 44444444444444 22222 1 3333333 222222222 22 1 11 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 333333333333333333 1 1 333333 1 111 1 1 2 1111 1 222222 3333 111 2 33333333333333333333333333333333333 11 1 1 2 22 11 222 11 6666666666666666666 2 11 22 333 1 22 1111111111111111111111111111111 22 2 11 4444444 1 222
lowQualScore : 6 5 2 5 5 99 4 4 4 5 888 5 66 5 5 000 3 555555 8 00 8 0 3 6 3 44 0 66 1 8 1 11 8 0 8 7777 3 2 0 0 6 999999999 22 55 777 111 777 0 222222222 0 33 3 0 44444444444444 99999 8 6 3 5 5 4 77 5 0 0 1 8 7777777 3 555555555 88 8 11 0 8 6 3 2 77 0 1 3 33 44 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 6 99 555555555555555555 2 0 2 9 0 222222 0 1 111 0 0 0 2222 0 888888 1 1111 3 8 99 444 8 8 0 7 55555555555555555555555555555555555 88 2 2 5 5 0 44 4 2 88 000 3 3 88 4 4444444444444444444 4 0 2 88 77 555 5 66 4 00 1111111111111111111111111111111 7 77 7 3 1 88 3333333 4 6 888 6
lowQualScore : . . . . . .. . . . . ... . .. . . ... . ...... . .. . . . . . .. . .. . . . .. . . . .... . . . . . ......... .. .. ... ... ... . ......... . .. . . .............. ..... . . . . . . .. . . . . . ....... . ......... .. . .. . . . . . .. . . . .. .. . ......................................................................................................................................... . . .. .................. . . . . . ...... . . ... . . . .... . ...... . .... . . .. ... . . . . ................................... .. . . . . . .. . . .. ... . . .. . ................... . . . .. .. ... . .. . .. ............................... . .. . . . .. ....... . . ... .
lowQualScore : 7 7 3 0 0 44 4 4 4 0 888 0 99 7 7 000 6 555555 0 88 0 6 6 0 8 88 8 88 0 0 0 00 0 8 0 6666 2 5 0 0 5 555555555 55 00 555 000 555 0 555555555 0 88 2 0 88888888888888 22222 0 7 5 7 7 3 99 7 6 8 0 0 4444444 2 000000000 88 0 66 8 0 0 2 5 55 0 0 2 22 77 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 22 999999999999999999 5 0 5 8 0 222222 0 0 000 0 0 0 2222 0 888888 0 2222 2 0 00 000 0 0 0 3 00000000000000000000000000000000000 55 5 5 0 5 0 00 0 5 00 555 0 0 00 0 5555555555555555555 0 0 5 00 55 000 0 55 0 00 3333333333333333333333333333333 3 33 3 3 0 33 0000000 0 7 777 7
consensus : GTTGCACATCT-CTAGTTTA-CGTAAGTACAG-CT-CAGTAGG-TTGA-TCCACG-GATCACGTA-AGCC---GGG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTCA-AAA-CTAAAACCAAAGCTTACCTGATCCAAACTTTTGAGC-GTNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATT-AATTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAA-GCC---TC-AAAA---G-C-T-AAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------C---A---GCAAAATAATTT-T---AAA-AATCAGAA-TATGAGACAATTACG-TTTG-AATTAAATGTCATCCTTTTAA--G-GAACTTCTTAATGATTCTTGAAACAAT-GCATAT-----AGTGTACCCAAA------A--CAATT-ATC-CATTTACTGAT-AACAATTTTCGAGTGAAATATAATAGCTAAAAGTT-ACTAGAAATCA-AATTAGTAAGTAAGANCGCNAAATTGTTTTATTATAGTGACATGTGGTCCATGATTTACAATTACAACATAATAATATATTGATAATAGGCCTTTAAACACCCAGCCATCGGACTATAATGTCCACTTTTAACATGATAACAATGATAATAAAAAATAGACTGGCA-TTACG-CATGGCG--TTTAGTTATATTA----ATATATA---ATACAAGGAG-TTTGCGGTTTAATT-AAT----TGTGCAAC-ATTGAATCCTCCAA-A-CGA-AC-CACAATCCA-AT-ATCTA-G------ATAAAAANGAT-TACAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTACAA--TTCTTCG---TTCTT------TTCTCT--ACAATCTCAAAC-GATCCACTG-CATCC--AAATAA-AC----CC-ATCATTCC-CCATGAGAACGTGAA
Reference ( family-139 ) : GTTGCACATCT-CTAGTTTA-CATAAGTACAG-CT-CAGTAGG-TTGA-TCCACG-GATCACGTA-AGCC---GGG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTCG-AAA-CTAAAACCAAAGCTTACCTGATCCAAACTNTTGAGC-GTNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATT-AATTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGC-A-GCC---TC-AAAA---G-C-T-AAAATGAA-CTTAAGGATAT--CATTGAGAAT-AAACAAAA------C---A---GCAAAATAATTT-T---AAA-AATCAGAA-TATGAGACAATTACG-TTTG-AATTAAATGTCATCCTTTTAA--G-GAACTTCTTAATGATTCTTGAAACAAT-GCATAT-----NGTGTACCCAAA------A--CAATT-ATC-CATTTACTGAT-AACAATTTTCGAGTGAAATATAATAGC--AAAGTT-ANTAGAAATCA-AATTAGTAAGCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAGACTGGCA-TTACG-CATGGCG--TTTAGTTATATTA----ATATATA---ATACAAGGAG-TTTGCGGTTTAATT-AAT----T-TGCAAC-ATTGAATCNTCCAA-A-CGA-AC-CACAAT-CA-AT-ATCTA-G------ATAAAAANAA--CACAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAAT-TATGTATCATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAATTTCTTTGATTTTCTTAATCAATTCTCTTAACAATCTCAAACAGATCCACTGCCATNC--AAATAAGACT---CCNATCATTCCTCCATGAGAACGTGAA
gi|1 : GTTGCATATC--CTAGTTTATCATAAGTACAG-CT-CAGTAGGGTTGA-TCCACG-GATCACGCA-AGCC---GGGGTTT--AAATTGCCGGG-G-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGAATCGCTTCA-AAATCTAAAACCAAAGCTTACCTGATCCTAACTTTTGAGT-GTTAATTGATAG-AAGGGATG-TTGAAAAATTGCATGCACGTCGTTTTCATTG-AATT-AATTGATT-TTGGGGAAGGAG-TCTACTCTTAA-GGATGGT---TTGC-A-GCC---CC-AAAA---G-C-TCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAAAA------C---A---GCAAAATAATTT-T---AAA-TATCAGAA-TATGAGACAATTACG-TTTGGAATTAAATGTCATCCTTTTAA--G-GAACTTCTTAATGATTCTTGAAACAGT-GCATA------AGTGTGCCCAAA------A--CAATTAATC-C-TTTACTGATGAACAA-TTTCGGGTGAATTATAATATCTAAAAGTT-ACTAGAAATCA-AATTAGTAAGTAAGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATATA---ATACAAGAAG-TTTGCG--TTAATT-AAT----T-TGCAACTACTGAATCCTCCAA-A-CAA-AT-CACAAT-CA-AT-ATCTA-G------ATAAAAATAAT-TACAATC-CTG-TTATT-CGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAA--AATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGT---GTATTTAAACAAAAGGTT--CATAAATTC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT--ATGTTTTTACAA-----TTCG---TTCT-------TTCT----ACAATCTCAAAC-CATCCACTG-CATCCCAAAATAA-ACGCAACCAATCATTC--CCATAAAAACGTGAA
gi|10 : GTTGCATATCT-CTAGTTCA-CGAAAATACAA-CT-TAGC-GG-TTGA-TCCATG-GATCACGCA-GACC---GGG-TTT--GAAC-GCCGGGTG-AGTCGGA---AGTACCTGAGTAGT---AA-TCCTGTTGt
gi|12 : actgG-TAAGT-TTGA---ATTT-A-TTAATAACGTATATGTATCATTTA
gi|14 : GCGTATCT-GTAGTTCA-CGTAAGTACAG-CT-CAG-AAC-TTAA-TCCTCG-AATCACGTA-AGTC---GAG-TTT--ttagttgatgccgatgacaggggaccatattccggatat
gi|15 : ggctggaaAAAATAATATAT---ATATAATCAGAA-TATGAGACAATTACG-TTTG-AATCAAAT---AACCCTTTAA--C-GAA
gi|16 : gaGG-TTGA-TCCACG-GATCTCGTA-AGCC---GGG-TTT--AAAT-GCCGGGTG-AATCGGA---GTTACCCGAGTAGT
gi|17 : tAAAATAGACTGGCA-TTACG-CATGACG--TCTAG-TATAATA----A
gi|18 : tttacatgctattgacaattaaataAAAATAGAATGGCA-TTACG-CATGGCG--TTTAGTTATAT
gi|19 : taacaatgaagtaATCAGAA-TATGAGACAATTGCG-TTTG-AATTAAATGTCATCCTTTTAA--G-GAAaa
gi|2 : GTTGCACATCTTCTAGTTTA-CATAAGTACAGCCT-CAGT-GG-TTGA-TCCACGAAATCACGTA-CGCCGTGGGG-TTT--AAAT-GCCAGGTG-AGTCGGA---GTTACC-GAGTAGT----A-TTCCGTTGCA-CGCTTCA-AAC-CT-AAACC-AAGCT--CCTGATCCAAACTTTTGAGCGGTTAA--AATAG-AAGGGATG-TCAAAAAAT----TGCACGTCA---TAATTGGAATTAAATTGATT-TTGGGGAAGGAGAT--A----TAA-GGAT-GT---TTGCAA-GCC---TTAAAAA---G-CTT-AAAATGAA-CTTAAGGATAT--CAATGAG-AT-AAACAAAA------CAATA---ACAAAATAAATT-TAA-AAA-AATCAG-A-T-TGAGACAATTACG-TTTG-AATAAAATGTCATCCTTTTAAAGG-AAACTTTTAAATGA-TCTTGAAACTGTGGCATAT------GTGTA-CCAAA------A--CAATT-ATCACATTTACTGAT-AACAATTTTCGAGTGAAATATAA-----------T-ACTAG---TC--AATTAGT-AGTAAGAAAGTAAAATTGTTTTATTATAGTGACATGTGGTCCATGATTTACAATTACAACATAATAATATATTGATAATAGGCCTTTAAACACCCAGCCATCGGACTATAATGTCCACTTTTAACATGATAACAATGATAATAAAAAATAGACT-GCA-TTACG-CATGACG--TTTAGTTATATTA----AAAT-TA-----ACAAGGAGTTTTGCGGTTTATTT-AAT----T-TGCAAC-ATTGAATCTTCCAA-A-CGA-ACGCACAATCCA-AT-ATCTA-G------ATAAAAAAGATTTAAAATCTTTG-TAAGT-AGGA---ATTT-ATTTAATAA
gi|20 : atggcgGTACAG-CT-CAGT-GG-TTGA-TCCACG-GATCACGtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|3 : tCACATCT-CTATGTTA-CATAAGAACAG-CC-----AGG-T-GA-TCCACG-GA-CACGCA-AGCC---GGG-TTT--AAAT-GCCGGGTGGAGTCGG----GTTACCTGAGTAGTA--A--TTCCGTTGCA-C-CTTCA-AAA-CTAAA-CCAAAGCTCTTCTGATCC-AATTATTGAGC-GTGAA--AATAGAAAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATT-AATTGATTCTTGGGAGAACAA-A--A----TAA--AATGGCCTGTTGCAA-ACCACATC-AAAAACGG-C-T-AAAATGAA-CTTAAGGATACGGCATTGAGAAT-AAACAAAACAACTCC---A---GCAAAATATTTA-A---AAA-AATCAGAATTTTGAATTAAGTACGTTTTG-A--TAAAT-TCAT-CTTTTAT--G-GAACTTCCTAATGA-TCT--AAGCAAT-GCATAT-----AGTGTACCCAAATCTTTTAACCAATT-ATC-CA-TTACTG-T-AACAAATTTCGAGT--AATATAATAGC--AAAGTGAATTAGAAATCATTATTAGTA--CAAGA
gi|3 : cgtgaAAAATAGACTGGCA-TTACG-CATGG-G--TTTAGTAATAT------ATATATATCCATACAAGAGG-TTTGCGGTTTT-TT-AATATGTTGTGCAAC-ATTGAATCCTCCAA-AACGA-AC-CACAATTCA-AA-ATCTA-G------ATAAAAAAGA--AACAATCTTTG-TAAGT-AGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTAattgttaattatattagatcgacattgttcatatttacattacaacaataatgatattataacaaagccttaaacaccccagctcacggaatcaaaagtttaaaatagactggcattacgcatgggtttagtaatatatatatatccatacaagaggtttgcggttttttaatatgttgtgcaacattgaatcctccaaaacgaaccacaattcaaaatctagataaaaaagaaacaatctttgtaagtaggaatttattattaaaattttgttcatttattagtgatgtcgatacagggggccatattccggaatat
gi|4 : cgtgacacatctctatgttacataagaacagccaggtgatccacggacacgcaagccgggtttaaatgccgggtggagtcgggttacctgagtagtaattccgttgcaccttcaaaactaaaccaaagctcttctgatccaattattgagcgtgaaaatagaaagggatgtcgaaaaatatgcacgtcattttcattggaattaattgattcttgggagaacaaaataaaatggcctgttgcaaaccacatcaaaaacggctaaaatgaacttaaggatacggcattgagaataaacaaaacaactccagcaaaatatttaaaaaaatcagaattttgaattaagtacgttttgataaattcatcttttatggaacttcctaatgatctaagcaatgcatatagtgtacccaaatcttttaaccaattatccattactgtaacaaatttcgagtaatataatagcaaagtgaattagaaatcattattagtacaagaattgttaattatattagatcgacattgttcatatttacattacaacaataatgatattataacaaagccttaaacaccccagctcacggaatcaaaagtttGTTGCACATCT-CTAATTTA-CACAAGTACAG-CT-CAGT-GG-TTGA-TCCACG-GATCACGTA-AGCT---GGG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--A--TTCCGTTGCA-CGCTTCA-AAA-CTAAA-CCAA-GCTTACCTGATCCAAACTTTTGAGC-GTGAA--AATAG-AAGGGGTG-TCGAAAAAT----TGTACGTCATTTTCATTGGAATT-AATTGATT-TTGGG-AAGGAG-T--C----TAAAGGATG-T---TTGC-AAGCC---TC-AAAA---AAC-TGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAA------C---AACAGCAAAATAATTT-TTTAAAA-AATCAGA--TATGGGACAATTACG-TTTG-AATTAAATGTCATCCTTTTAA--G-AAACTTCTTAATGATTCTTGAAAACAT-GCATAT------GTGTATCCAAA------A--CAATT-ATC-CATTTACTGAT-AACAATTTTCGAGTGAAATATAATAGCTAAAAGTT-AATAGAAATCA-Attagtgatgtcgatacagggggccatattccggaatat
gi|5 : atggccgTGGCACTTACGTCATGGCG--TTTAGTTATA-TA----------A---ATACAA-GAG-TTTGCGGTTTAATTAAAT----TGTGCAAT-CTTGGATCATCCAACA-CGACAC-CATAAA-CATGTCATCTATGGAGGATATAAAAGTAA--C-CAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAAT-Tta
gi|6 : tacatttatcataaacccaattattccatcttaactcgattaccaattttgggtggtaatgctatcaatactctagttaatgagacacaccaattcaacattagtagtaattaagagtaaatttgtttattatatgacattgtaccatattaatcacgaagtgtagacgaacgagaatagataatagtaagtaatagtttaagaccttaatgaacccagataaatgtacatcagccccatcggacctataattgtcctttaacgggtagaacagatgaagtaataaaatcacgataACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAATTTC---GATTTTCTT---------TTTTAATAATTTT---C-GATCC-CTGCCATCT--AAATAAGACT---CC-AT-ATT-CTCCATGAGAAC-TGAAtataaagatg
gi|7 : aataaagcttgaaaagGGTGTGTGTCTTTACAA--TTCTTTA---TTCTTAATCAATTCTCT--ACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCC-CCATGAGAACGTGActt
gi|8 : ctaacgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattattgcttttAGCTTA-C-TAAATACAA-CTTCAGCAGT-TTGAATCCGGT-GATCAC-TATATTC---TGG-TTTTTAAAT-GCCGTTTG-AGTCGGAGTTGTTAC--GA-TAATATCAATTTCTATTGCA-CGCCTCGAAAA-CT-AAGCCTAGGCTTACT---TTCA----GTT-----GTACA--AAGAG-A--GGATATTCGAAAAAA---GTGC
gi|9 : ACAATTACG-TTTG-AATTAAATGTCATCCTTCTAA--GAAAATTTCTTAATGATTCTTTAAACAAT-GCATATACATGTATGTACCCAAA------A--CAAT---TC-CATTTACTGAT-AACAATTTTCGAGTGAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAGAAGGTAATTGATAAGTAATTGTATTATTATAGTGACATGTGTCATATGTCATAATTAAACATAAGTATCATAATAGCCTAACATCCCGG
Unaligned ( gi|13 ): ATAGCAAGTAAGCAAATCTTTTATCATAGTGACATGTGCGTTTAAGTGGAACATAATAATATATGGCATATGATAA
Alignments
lowQualScore : 11 111 22222 2 1 11 2222 1 1 333333333 11 22222 111 44444444 11 111 333333333333333 11111 11 3333333 222222222 1 333333333333333 2222222 1111 2222 3333333 44444444444444444444444444444444444444444444444 22222222 111 111 4444444444444444 1111 1 33333333333333333333333333333333333 222222 333333333333333333 1 1 2222 1 1 1 1 1 1 111 22222 2222222 111 11 1 1 1 11 11 222 11 6666666666666666666 1 11 11 222 1 22 333 222 444444444 1 1 11 1 4444444
lowQualScore : 6 5 6 5 5 99 4 4 4 5 888 5 66 5 5 000 3 66666 8 8 8 0 3 3 44 1 5 8 8 8 1 11 8 0 8 7777 3 2 0 0 6 999999999 22 77777 3 777 22222222 3 3 33 000 888888888888888 88888 8 99 44 3 5 5 4 8888 11 0 1 8 1111111 333333333 6 6 6 99 6 3 3 1 222222222222222 88 3 8 3333333 8 5555 4444 6666666 0 8 4 99999999999999999999999999999999999999999999999 0 6 0 55555555 444 5 333 0 5555555555555555 6666 5 0 44444444444444444444444444444444444 0 333333 6 6 99 555555555555555555 2 0 2 77 0 1111 5 0 0 0 0 0 0 99 777 55555 1 4444444 3 8 99 444 8 8 9 7 88 1 1 5 5 5 66 1 1 88 000 1 1 88 1 4444444444444444444 1 5 1 88 88 111 5 22 1 00 000 333 888888888 7 7 3 3 7 3 88 3 8888888 6 6 6
lowQualScore : . . . . . .. . . . . ... . .. . . ... . ..... . . . . . . .. . . . . . . .. . . . .... . . . . . ......... .. ..... . ... ........ . . .. ... ............... ..... . .. .. . . . . .... .. . . . ....... ......... . . . .. . . . . ............... .. . . ....... . .... .... ....... . . . ............................................... . . . ........ ... . ... . ................ .... . . ................................... . ...... . . .. .................. . . . .. . .... . . . . . . . .. ... ..... . ....... . . .. ... . . . . .. . . . . . .. . . .. ... . . .. . ................... . . . .. .. ... . .. . .. ... ... ......... . . . . . . .. . ....... . . .
lowQualScore : 7 7 3 0 0 44 4 4 4 0 888 0 99 7 7 000 6 33333 0 0 0 8 4 6 88 0 6 0 0 0 0 00 0 8 0 6666 2 5 0 0 5 555555555 55 22222 2 555 55555555 2 2 88 222 888888888888888 22222 0 22 00 5 7 7 3 1111 66 8 0 0 4444444 222222222 7 7 7 22 7 3 5 0 666666666666666 66 2 0 8888888 0 4444 6666 4444444 8 5 3 88888888888888888888888888888888888888888888888 8 7 8 55555555 000 4 888 8 4444444444444444 5555 8 0 55555555555555555555555555555555555 8 000000 7 7 22 999999999999999999 5 0 5 22 0 2222 0 0 2 0 0 0 0 00 555 00000 0 8888888 2 0 00 000 0 0 8 3 55 0 0 0 5 0 55 0 0 00 555 0 0 00 0 5555555555555555555 0 5 0 00 55 555 0 00 0 00 000 333 333333333 3 3 7 3 3 3 33 3 3333333 7 7 7
consensus : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--G-CTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAG-AN-GTCAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACGTG-ATA---ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCG--TTTAGTTATATTA----ATATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTACAA-T-TTCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
Reference ( family-139 ) : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAAACCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAA---G-CT-AAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ACT-AGA------AAT-CA-A-ATTAGTA---AGTAAG-ANCGCNAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACATG-ATA---ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCG--TTTAGTTATATTA----ATATATA---ATACAAGGAG-TTTGCGGTTTAATT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAANGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTACAATTCTTCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
gi|1 : GTTGCATATC--CTAGTTTATCATAAGTACAGC-T-CAGTAGGGTTGA-TCCACGGA-TCACGCA-AGCCG---GGGTTT--AAATTGCCGGG-G-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGAATCGCTTC-AAAATCTAAAACCAAAGCTTACCTGATCCTAACTT-TTGAG-TG-TTAATTGATAG-AAGGGATG-TTGAAAAATTGCATGCACGTCGTTTTCATTG-AATTAA-TTGATT-TTGGGGAAGGAG-TCTACTCTTAA-GGATGGT---TTGCA-GCC---CCAAAA---G-CTCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAAAA------CA---G---CAAAATAATTT-T---AAA-TA--TCAGAA-TATGAGACAATTACG-TTTGGAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAGTG-CATA-A-----GTGTGCCCAAA------A--CAATTAAT-C-C-TTT--ACT-GATGAACAA-TTTCGGGTGAATTATAATATCTA--AA------AGTT-ACT-AGA------AAT-CA-A-ATTAGTA---AGTAAG-ACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN------------NNN--------NNNNNNNN-NNNN------NNNNNNN---NNNNNNN--NNNNN------------N-N-NNNNN-N--NNNNNNN-NNNNNN-NNNNNNNNNNNNNNNN-NNN---NNN-NNNN--NNNNNNAA----AACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATATA---ATACAAGAAG-TTTGCG--TTAATT-AA----TT-TGCAACTACTGAATCCTCC-AA-ACAA-AT-CACAAT-CAAT---ATCTA-----GATAAAAATAA-TTA--CAATC-CTG-TTATT-CGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAA--AATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGT---GTATTTAAACAAAAGGTT--CATAAATTC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT--ATGTTTTTACAA---TTCG---TTCTT---------TCTACAATCTCAAACCA-TCCACTG-CATCCCAAAATAA-ACGCAACCAATCATT-CCCATAAAAACGTGAA
gi|10 : GTTGCATATCT-CTAGTTCA-CGAAAATACAAC-T-TAGC-GG-TTGA-TCCATGGA-TCACGCA-GACCG---GG-TTT--GAAC-GCCGGGTG-AGTCGGA---AGTACCTGAGTAGT---AA-TCCTGTTGt
gi|11 : actgAATTGTATTATTATAGTGACATGT-GTCATATG--TCATAATTA-------------AAC--------ATAA-----GTAT------C-ATAAT---A-GCCT-----AAC------------A-T-CC
gi|12 : aagaaggtaattgataagtG-TAAGT-TTGA---ATTT-A-TTAATAACGTATATGTATCATTTAcgg
gi|13 : TAGCA---AGTAAG------CAAATC-TTTTATCATAGTGACATGTG------CG-TTTA--AGTGG------------AAC--------ATAATAAT-ATATGGCATATGATAAttagttgatgccgatgacaggggaccatattccggatat
gi|14 : aGCGTATCT-GTAGTTCA-CGTAAGTACAGC-T-CAG-AAC-TTAA-TCCTCGAA-TCACGTA-AGTCG---AG-TTT--
gi|15 : ggctggaaAAAATAATATAT---ATATAA--TCAGAA-TATGAGACAATTACG-TTT-GAATCAAAT---AACCCTTTAAC-G--AA
gi|16 : gaGG-TTGA-TCCACGGA-TCTCGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AATCGGA---GTTACCCGAGTAGT
gi|17 : tTTTA-CATG-CTATTGACA-ATTA---AATAAAA-----ATAGACTGGCA-TTACG-CATGACG--TCTAG-TATAATA----A
gi|18 : TA---ACA-ATGA---AGTAAAA----A-TAGAATGGCA-TTACG-CATGGCG--TTTAGTTATAT
gi|19 : A--TCAGAA-TATGAGACAATTGCG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AAaa
gi|2 : GTTGCACATCTTCTAGTTTA-CATAAGTACAGCCT-CAGT-GG-TTGA-TCCACGAAATCACGTA-CGCCGTGGGG-TTT--AAAT-GCCAGGTG-AGTCGGA---GTTACC-GAGTAGTA-----TTCCGTTGCA-CGCTTC-AAAC-CTAAA-CCAA-GCT--CCTGATCCAAACTT-TTGAG-CGGTTAA--AATAG-AAGGGATG-TCAAAAAAT----TGCACGTCAT---AATTGGAATTAAATTGATT-TTGGGGAAGGAGAT--A----TAA-GGATG-T---TTGCAAGCC---TTAAAAA--G-CTTAAAATGAA-CTTAAGGATAT--CAATGAGA-T-AAACAAAA------CA---ATAACAAAATAAATT-T---AAA-AAAATCAGA--T-TGAGACAATTACG-TTT-GAATAAAATGTCATCCTTTTAAA-GGAAACTTTTAAATGAT-CTTGAAACTGTGGCATAT------GTGTACC-AAA------A--CAATT-AT-CACATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATA--------------------CT-AG---------T-CA-A--TTAGTA----GTAAG-AAAGTAAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACATG-ATA---ACA-ATGA--TAATAAAA----AATAGACT-GCA-TTACG-CATGACG--TTTAGTTATATTA----AAAT-TA-----ACAAGGAGTTTTGCGGTTTATTT-AA----TT-TGCAAC-ATTGAATCTTCC-AA-ACGA-ACGCACAATCCAAT---ATCTA-----GATAAAAAAGATTTA--AAATCTTTG-TAAGT-AGGA---ATTT-ATTTAATAA
gi|20 : atggcgGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|3 : tCACATCT-CTATGTTA-CATAAGAACAGC-C-----AGG-T-GA-TCCACGGA--CACGCA-AGCCG---GG-TTT--AAAT-GCCGGGTGGAGTCGG----GTTACCTGAGTAGTA--A--TTCCGTTGCA-C-CTTC-AAAA-CTAAA-CCAAAGCTCTTCTGATCCAA--TTATTGAG-CG-TGAA--AATAGAAAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATTCTTGGGAGAACAA-A--A----TAA--AATGGCCTGTTGCAAACCACATCAAAAACGG-CT-AAAATG-AACTTAAGGATACGGCATTGAGAAT-AAACAAAACAACTCCA---G---CAAAATATTTA-A---AAA-AA--TCAGAATTTTGAATTAAGTACGTTTT-GA--TAAAT-TCAT-CTTTTATG-G--AACTTCCTAATGA-TCT--AAGCAATG-CATATA-----GTGTACCCAAATCTTTTAACCAATT-AT-C-CA-TT--ACT-G-T-AACAAATTTCGAGT--AATATAATAGC----AA------AGTGAATT-AGA------AAT-CATT-ATTAGTA-----CAAGAATTGTTAA----TTATATTAGATCGACAT-T-GTT-CAT-ATTTAC-ATTAC------------AAC----------AATAATGATAT------T-ATAAC---AAAGCCT--TAAAC------------ACC-CCAGCTC--A-CGGAA-TCAAAA-G------TTTAA----------------------AATA-----------GACTGGCA-TTACG-CATGG-G--TTTAGTAATAT------ATATATATCCATACAAGAGG-TTTGCGGTTT-TTT-AATATGTTGTGCAAC-ATTGAATCCTCCAAA-ACGA-AC-CACAATTCAAA---ATCTA-----GATAAAAAAGA--AA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTA
gi|4 : cgtgaGTTGCACATCT-CTAATTTA-CACAAGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGTA-AGCTG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--A--TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAA-GCTTACCTGATCCAAACTT-TTGAG-CG-TGAA--AATAG-AAGGGGTG-TCGAAAAAT----TGTACGTCATTTTCATTGGAATTAA-TTGATT-TTGGG-AAGGAG-T--C----TAAAGGATG-T---TTGCAAGCC---TCAAAA---AACTGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAA------CAACAG---CAAAATAATTT-TTTAAAA-AA--TCAGA--TATGGGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-A--AACTTCTTAATGATTCTTGAAAACATG-CATAT------GTGTATCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-AAT-AGA------AAT-CA-A-ttagtgatgtcgatacagggggccatattccggaatat
gi|5 : atggccg--CAATT-ATTC-CATCTTAACTCGATTACCAATTTT-GGGTGG----TAAT-GCTATCAATACTCTAGTT-AATGAGACACACCAATTCA-ACATTAGTAGTAATTAAG-AG---TAAATTTGTTTATTATA-TGACAT-TGTAC-CAT-ATT---AATCACGAAGTGTAGACGAACGAGAATAGATAATAGT-A-AG------TAATAGTTTAAGACCTTAATGAACCCAGATAAATGTA-CATCAGC-CCCATCGGACCTATAATTGTCC---TTTAACGGGTAGA---ACAGATGAAGTAATAAAATCACGATA---TGGCACTTACGTCATGGCG--TTTAGTTATA-TA----------A---ATACAA-GAG-TTTGCGGTTTAATTAAA----TTGTGCAAT-CTTGGATCATCC-AACACGACAC-CATAAAC--ATGTCATCTATGGAGGATATAAAAG---TAACCAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAATTTATta
gi|6 : tacatttatcataaaccACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAAT-TTCGATTTTCTT------TTTTA-ATAATTTT---CGA-TCC-CTGCCATCT--AAATAAGACT---CC-AT-ATTCTCCATGAGAAC-TGAAaaagatg
gi|7 : aataaagcttgaaaagGGTGTGTGTCTTTACAATTCTTTA---TTCTTAATCAATTCTCTACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCCCCATGAGAACGTGActt
gi|8 : ctaacgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattattgcttttAGCTTA-C-TAAATACAAC-TTCAGCAGT-TTGAATCCGGTGA-TCAC-TATATTCT---GG-TTTTTAAAT-GCCGTTTG-AGTCGGAGTTGTTAC--GA-TAATATCAATTTCTATTGCA-CGCCTCGAAAA-CT-AAGCCTAGGCTTAC------------T-TTCAGTTG-TACA--AAGAG-A--GGATATTCGAAAAAA---GTGC
gi|9 : ACAATTACG-TTT-GAATTAAATGTCATCCTTCTAAGAA--AATTTCTTAATGATTCTTTAAACAATG-CATATACATGTATGTACCCAAA------A--CAAT---T-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAA
Alignments
lowQualScore : 11 111 22222 1 11 2222 1 1 333333333 11 22222 111 111 1 11 111 333333333333333 11111 11 3333333 222222222 1 333333333333333 2222222 1111 22222 3333333 1 55555555555555555555555555555555555555555555555 33333333 111 111 5555555555555555 2222 1 33333333 3333333333333333333 222222 333333333333333333 1 1 2222 1 1 1 1 1 1 1111111 22222 2222222 111 11 1 1 1 11 11 222 11 6666666666666666666 1 11 11 222 1 22 1 11 222 444444444 1 1 11 1 4444444
lowQualScore : 6 5 6 5 5 99 4 4 4 5 888 5 66 5 5 000 3 66666 8 8 8 8 3 44 1 5 8 8 8 1 11 8 0 8 7777 3 2 0 0 6 999999999 22 77777 3 777 777 0 3 3 33 000 888888888888888 88888 8 99 44 3 5 5 4 8888 11 0 1 8 1111111 333333333 6 6 6 99 6 3 3 1 222222222222222 88 1 8 3333333 8 5555 11111 7777777 0 0 5 44444444444444444444444444444444444444444444444 0 8 0 00000000 777 6 777 0 6666666666666666 1111 7 3 66666666 5555555555555555555 0 333333 6 6 99 555555555555555555 2 0 2 44 0 1111 5 0 0 0 0 0 0 8888888 55555 4444444 3 8 99 444 8 8 9 7 88 1 1 5 5 5 66 1 1 88 000 1 1 88 1 4444444444444444444 1 5 1 88 88 111 5 22 1 00 3 7 88 333 888888888 7 7 3 3 7 3 88 3 8888888 6 6 6
lowQualScore : . . . . . .. . . . . ... . .. . . ... . ..... . . . . . .. . . . . . . .. . . . .... . . . . . ......... .. ..... . ... ... . . . .. ... ............... ..... . .. .. . . . . .... .. . . . ....... ......... . . . .. . . . . ............... .. . . ....... . .... ..... ....... . . . ............................................... . . . ........ ... . ... . ................ .... . . ........ ................... . ...... . . .. .................. . . . .. . .... . . . . . . . ....... ..... ....... . . .. ... . . . . .. . . . . . .. . . .. ... . . .. . ................... . . . .. .. ... . .. . .. . . .. ... ......... . . . . . . .. . ....... . . .
lowQualScore : 7 7 3 0 0 44 4 4 4 0 888 0 99 7 7 000 6 33333 0 0 0 0 6 88 0 6 0 0 0 0 00 0 8 0 6666 2 5 0 0 5 555555555 55 22222 2 555 000 8 2 2 88 222 888888888888888 22222 0 22 00 5 7 7 3 1111 66 8 0 0 4444444 222222222 7 7 7 22 7 3 5 0 666666666666666 66 0 0 8888888 0 4444 55555 8888888 8 0 0 66666666666666666666666666666666666666666666666 8 0 8 22222222 555 5 000 8 2222222222222222 7777 3 3 33333333 8888888888888888888 8 000000 7 7 22 999999999999999999 5 0 5 22 0 2222 0 0 2 0 0 0 0 0000000 00000 8888888 2 0 00 000 0 0 8 3 55 0 0 0 5 0 55 0 0 00 555 0 0 00 0 5555555555555555555 0 5 0 00 55 555 0 00 0 00 3 3 33 333 333333333 3 3 7 3 3 3 33 3 3333333 7 7 7
consensus : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGA--A-GT-AAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-G-ATAACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
Reference ( family-139 ) : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGA--N-GTCAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACGTG-ATAACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
gi|1 : GTTGCATATC--CTAGTTTATCATAAGTACAGC-T-CAGTAGGGTTGA-TCCACGGA-TCACGCA-AGCCG---GGGTTT--AAATTGCCGGG-G-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGAATCGCTTC-AAAATCTAAAACCAAAGCTTACCTGATCCTAACTT-TTGAG-TG-TTAATTGATAG-AAGGGATG-TTGAAAAATTGCATGCACGTCGTTTTCATTG-AATTAA-TTGATT-TTGGGGAAGGAG-TCTACTCTTAA-GGATGGT---TTGCA-GCC---CCAAAA---GCTCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAAAA------CA---G---CAAAATAATTT-T---AAA-TA--TCAGAA-TATGAGACAATTACG-TTTGGAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAGTG-CATA-A-----GTGTGCCCAAA------A--CAATTAAT-C-C-TTT--ACT-GATGAACAA-TTTCGGGTGAATTATAATATCTA--AA------AGTT-ACT-AGA------AAT-CA-A-ATTAGTA---AGTAAGA--
gi|1 : AA----AACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATATA---ATACAAGAAG-TTTGCG--TTAATT-AA----TT-TGCAACTACTGAATCCTCC-AA-ACAA-AT-CACAATC-AAT---ATCTA-----GATAAAAATAA-TTA--CAATCCT-G-TTATT-CGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAA--AATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGT---GTATTTAAACAAAAGGTT--CATAAATTC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT--ATGTTTTTAC-AA-T--TCG---TTCTT---------TCTACAATCTCAAACCA-TCCACTG-CATCCCAAAATAA-ACGCAACCAATCATT-CCCATAAAAACGTGAAccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacagactggcattgcgcatggcgtttttagtaatactaaaagatatataatacaagaagtttgcgttaattaatttgcaactactgaatcctccaaacaaatcacaatcaatatctagataaaaataattacaatcctgttattcggaatttattaataaaatatatgtatcatttaccaatatatagcaccttaaataaatcagaaaccttacaaaatattaaacagaataaactaagaatgggtaaaacgcatattaatttgataaaactggtgtatttaaacaaaaggttcataaattcgatttacaaattatatcagttgaaaaaaaatctatagtcataattatcatattgtgtaaggataaggtatgtttttacaattcgttctttctacaatctcaaaccatccactgcatcccaaaataaacgcaaccaatcattcccataaaaacgtgaat
gi|10 : gttgcatatcctagtttatcataagtacagctcagtagggttgatccacggatcacgcaagccggggtttaaattgccggggagtcggagttacctgagtagtaaattccgttgaatcgcttcaaaatctaaaaccaaagcttacctgatcctaacttttgagtgttaattgatagaagggatgttgaaaaattgcatgcacgtcgttttcattgaattaattgattttggggaaggagtctactcttaaggatggtttgcagccccaaaagctcaaaatgaaacttaaggatatcattgagactgaaacaaaacagcaaaataattttaaatatcagaatatgagacaattacgtttggaattaaatgtcatccttttaaggaacttcttaatgattcttgaaacagtgcataagtgtgcccaaaacaattaatcctttactgatgaacaatttcgggtgaattataatatctaaaagttactagaaatcaaattagtaagtaagaccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGCATATCT-CTAGTTCA-CGAAAATACAAC-T-TAGC-GG-TTGA-TCCATGGA-TCACGCA-GACCG---GG-TTT--GAAC-GCCGGGTG-AGTCGGA---AGTACCTGAGTAGT---AA-TCCTGTTGt
gi|11 : actgGTA---ATTGATA--A-GT--AATTGTATTATTATAGTGACATGT-GTCATATG--TCATAATTA-------------AAC--------ATAA-----GTAT------C-ATAAT---A-GCCT-----AAC------------A-T-CC
gi|12 : aagaagG-TAAGT-TTGA---ATTT-A-TTAATAACGTATATGTATCATTTAcgg
gi|13 : TAGCA---AGTAAG-------CAAATC-TTTTATCATAGTGACATGTG------CG-TTTA--AGTGG------------AAC--------ATAATAAT-ATATGGCATATGATAAttagttgatgccgatgacaggggaccatattccggatat
gi|14 : aGCGTATCT-GTAGTTCA-CGTAAGTACAGC-T-CAG-AAC-TTAA-TCCTCGAA-TCACGTA-AGTCG---AG-TTT--
gi|15 : ggctggaaAAAATAATATAT---ATATAA--TCAGAA-TATGAGACAATTACG-TTT-GAATCAAAT---AACCCTTTAAC-G--AA
gi|16 : gaGG-TTGA-TCCACGGA-TCTCGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AATCGGA---GTTACCCGAGTAGT
gi|17 : tTGACA-ATTA---AATAAAA-----ATAGACTGGCA-TTACG-CATGACGTCT--AG-TATAATAA----
gi|18 : tttacatgctatTAACA-ATGA---AGTAAAA----A-TAGAATGGCA-TTACG-CATGGCGTTT--AGTTATAT
gi|19 : A--TCAGAA-TATGAGACAATTGCG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AAaa
gi|2 : GTTGCACATCTTCTAGTTTA-CATAAGTACAGCCT-CAGT-GG-TTGA-TCCACGAAATCACGTA-CGCCGTGGGG-TTT--AAAT-GCCAGGTG-AGTCGGA---GTTACC-GAGTAGTA-----TTCCGTTGCA-CGCTTC-AAAC-CTAAA-CCAA-GCT--CCTGATCCAAACTT-TTGAG-CGGTTAA--AATAG-AAGGGATG-TCAAAAAAT----TGCACGTCAT---AATTGGAATTAAATTGATT-TTGGGGAAGGAGAT--A----TAA-GGATG-T---TTGCAAGCC---TTAAAAA--GCTTAAAATGAA-CTTAAGGATAT--CAATGAGA-T-AAACAAAA------CA---ATAACAAAATAAATT-T---AAA-AAAATCAGA--T-TGAGACAATTACG-TTT-GAATAAAATGTCATCCTTTTAAA-GGAAACTTTTAAATGAT-CTTGAAACTGTGGCATAT------GTGTACC-AAA------A--CAATT-AT-CACATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATA--------------------CT-AG---------T-CA-A--TTAGTA----GTAAGA--AAGTAAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACATG-ATAACA-ATGA--TAATAAAA----AATAGACT-GCA-TTACG-CATGACGTTT--AGTTATATTAA----AAT-TA-----ACAAGGAGTTTTGCGGTTTATTT-AA----TT-TGCAAC-ATTGAATCTTCC-AA-ACGA-ACGCACAATCCAAT---ATCTA-----GATAAAAAAGATTTA--AAATCTTTG-TAAGT-AGGA---ATTT-ATTTAATAA
gi|20 : atggcgGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|3 : tCACATCT-CTATGTTA-CATAAGAACAGC-C-----AGG-T-GA-TCCACGGA--CACGCA-AGCCG---GG-TTT--AAAT-GCCGGGTGGAGTCGG----GTTACCTGAGTAGTA--A--TTCCGTTGCA-C-CTTC-AAAA-CTAAA-CCAAAGCTCTTCTGATCCAA--TTATTGAG-CG-TGAA--AATAGAAAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATTCTTGGGAGAACAA-A--A----TAA--AATGGCCTGTTGCAAACCACATCAAAAACGGCT-AAAATG-AACTTAAGGATACGGCATTGAGAAT-AAACAAAACAACTCCA---G---CAAAATATTTA-A---AAA-AA--TCAGAATTTTGAATTAAGTACGTTTT-GA--TAAAT-TCAT-CTTTTATG-G--AACTTCCTAATGA-TCT--AAGCAATG-CATATA-----GTGTACCCAAATCTTTTAACCAATT-AT-C-CA-TT--ACT-G-T-AACAAATTTCGAGT--AATATAATAGC----AA------AGTGAATT-AGA------AAT-CATT-ATTAGTA-----CAAGAATT-GTTAA----TTATATTAGATCGACAT-T-GTT-CAT-ATTTAC-ATTAC------------AAC----------AATAATGATAT------T-ATAAC---AAAGCCT--TAAAC------------ACC-CCAGCTC--A-CGGAA-TCAAAA-G------TTTAA-------------------AATA-----------GACTGGCA-TTACG-CATGG-GTTT--AGTAATAT--A----TATATATCCATACAAGAGG-TTTGCGGTTT-TTT-AATATGTTGTGCAAC-ATTGAATCCTCCAAA-ACGA-AC-CACAATTCAAA---ATCTA-----GATAAAAAAGA--AA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTA
gi|4 : cgtgaGTTGCACATCT-CTAATTTA-CACAAGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGTA-AGCTG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--A--TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAA-GCTTACCTGATCCAAACTT-TTGAG-CG-TGAA--AATAG-AAGGGGTG-TCGAAAAAT----TGTACGTCATTTTCATTGGAATTAA-TTGATT-TTGGG-AAGGAG-T--C----TAAAGGATG-T---TTGCAAGCC---TCAAAAA--ACTGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAA------CAACAG---CAAAATAATTT-TTTAAAA-AA--TCAGA--TATGGGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-A--AACTTCTTAATGATTCTTGAAAACATG-CATAT------GTGTATCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-AAT-AGA------AAT-CA-A-ttagtgatgtcgatacagggggccatattccggaatat
gi|5 : atggccg--CAATT-ATTC-CATCTTAACTCGATTACCAATTTT-GGGTGG----TAAT-GCTATCAATACTCTAGTT-AATGAGACACACCAATTCA-ACATTAGTAGTAATTAAGA----GT-AAATTTGTTTATTATA-TGACAT-TGTAC-CAT-ATT---AATCACGAAGTGTAGACGAACGAGAATAGATAATAGT-A-AG------TAATAGTTTAAGACCTTAATGAACCCAGATAAATGTA-CATCAGC-CCCATCGGACCTATAATTGTCC---TTTAACGGGTAGAACAGATGAAGTAATAAAATCACGATA---TGGCACTTACGTCATGGCGTTT--AGTTATA-TA----------A---ATACAA-GAG-TTTGCGGTTTAATTAAA----TTGTGCAAT-CTTGGATCATCC-AACACGACAC-CATAAAC--ATGTCATCTATGGAGGATATAAAAG---TAACCAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAATTTATta
gi|6 : tacatttatcataaaccACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAATT--TCGATTTTCTT------TTTTA-ATAATTTT---CGA-TCC-CTGCCATCT--AAATAAGACT---CC-AT-ATTCTCCATGAGAAC-TGAAaaagatg
gi|7 : aataaagcttgaaaagGGTGTGTGTCTTTAC-AATTCTTTA---TTCTTAATCAATTCTCTACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCCCCATGAGAACGTGActt
gi|8 : ctaacgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattattgcttttAGCTTA-C-TAAATACAAC-TTCAGCAGT-TTGAATCCGGTGA-TCAC-TATATTCT---GG-TTTTTAAAT-GCCGTTTG-AGTCGGAGTTGTTAC--GA-TAATATCAATTTCTATTGCA-CGCCTCGAAAA-CTAAG-CCTAGGCTTAC------------T-TTCAGTTG-TACA--AAGAG-A--GGATATTCGAAAAAA---GTGC
gi|9 : ACAATTACG-TTT-GAATTAAATGTCATCCTTCTAAGAA--AATTTCTTAATGATTCTTTAAACAATG-CATATACATGTATGTACCCAAA------A--CAAT---T-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAA
Alignments
lowQualScore : 11 111 22222 1 11 2222 1 1 333333333 11 22222 111 111 1 11 111 333333333333333 11111 11 3333333 222222222 1 333333333333333 2222222 1111 22222 222 111 55555555555555555555555555555555555555555555555 33333333 111 111 5555555555555555 2222 1 33333333 44444444444444444444 11111 333333333333333333 1 1 2222 1 1 1 1 1 1 1111111 22222 2222222 111 11 1 1 1 11 11 222 11 6666666666666666666 1 11 11 222 1 22 1 11 222 444444444 1 1 11 1 4444444
lowQualScore : 6 5 6 5 5 99 4 4 4 5 888 5 66 5 5 000 3 66666 8 8 8 8 3 44 1 5 8 8 8 1 11 8 0 8 7777 3 2 0 0 6 999999999 22 77777 3 777 777 0 3 3 33 000 888888888888888 88888 8 99 44 3 5 5 4 8888 11 0 1 8 1111111 333333333 6 6 6 99 6 3 3 1 222222222222222 88 1 8 3333333 8 5555 11111 444 88 444 5 44444444444444444444444444444444444444444444444 0 8 0 00000000 777 6 777 0 6666666666666666 1111 7 3 00000000 00000000000000000000 55555 6 6 99 555555555555555555 2 0 2 44 0 1111 5 0 0 0 0 0 0 8888888 55555 4444444 3 8 99 444 8 8 9 7 88 1 1 5 5 5 66 1 1 88 000 1 1 88 1 4444444444444444444 1 5 1 88 88 111 5 22 1 00 3 7 88 333 888888888 7 7 3 3 7 3 88 3 8888888 6 6 6
lowQualScore : . . . . . .. . . . . ... . .. . . ... . ..... . . . . . .. . . . . . . .. . . . .... . . . . . ......... .. ..... . ... ... . . . .. ... ............... ..... . .. .. . . . . .... .. . . . ....... ......... . . . .. . . . . ............... .. . . ....... . .... ..... ... .. ... . ............................................... . . . ........ ... . ... . ................ .... . . ........ .................... ..... . . .. .................. . . . .. . .... . . . . . . . ....... ..... ....... . . .. ... . . . . .. . . . . . .. . . .. ... . . .. . ................... . . . .. .. ... . .. . .. . . .. ... ......... . . . . . . .. . ....... . . .
lowQualScore : 7 7 3 0 0 44 4 4 4 0 888 0 99 7 7 000 6 33333 0 0 0 0 6 88 0 6 0 0 0 0 00 0 8 0 6666 2 5 0 0 5 555555555 55 22222 2 555 000 8 2 2 88 222 888888888888888 22222 0 22 00 5 7 7 3 1111 66 8 0 0 4444444 222222222 7 7 7 22 7 3 5 0 666666666666666 66 0 0 8888888 0 4444 55555 666 88 888 0 66666666666666666666666666666666666666666666666 8 0 8 22222222 555 5 000 8 2222222222222222 7777 3 3 77777777 00000000000000000000 88888 7 7 22 999999999999999999 5 0 5 22 0 2222 0 0 2 0 0 0 0 0000000 00000 8888888 2 0 00 000 0 0 8 3 55 0 0 0 5 0 55 0 0 00 555 0 0 00 0 5555555555555555555 0 5 0 00 55 555 0 00 0 00 3 3 33 333 333333333 3 3 7 3 3 3 33 3 3333333 7 7 7
consensus : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
Reference ( family-139 ) : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GATA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
gi|1 : GTTGCATATC--CTAGTTTATCATAAGTACAGC-T-CAGTAGGGTTGA-TCCACGGA-TCACGCA-AGCCG---GGGTTT--AAATTGCCGGG-G-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGAATCGCTTC-AAAATCTAAAACCAAAGCTTACCTGATCCTAACTT-TTGAG-TG-TTAATTGATAG-AAGGGATG-TTGAAAAATTGCATGCACGTCGTTTTCATTG-AATTAA-TTGATT-TTGGGGAAGGAG-TCTACTCTTAA-GGATGGT---TTGCA-GCC---CCAAAA---GCTCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAAAA------CA---G---CAAAATAATTT-T---AAA-TA--TCAGAA-TATGAGACAATTACG-TTTGGAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAGTG-CATA-A-----GTGTGCCCAAA------A--CAATTAAT-C-C-TTT--ACT-GATGAACAA-TTTCGGGTGAATTATAATATCTA--AA------AGTT-ACT-AGA------AAT-CA-A-ATTAGTA---AGTAAGA
gi|1 : AA----AACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATATA---ATACAAGAAG-TTTGCG--TTAATT-AA----TT-TGCAACTACTGAATCCTCC-AA-ACAA-AT-CACAATC-AAT---ATCTA-----GATAAAAATAA-TTA--CAATCCT-G-TTATT-CGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAA--AATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGT---GTATTTAAACAAAAGGTT--CATAAATTC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT--ATGTTTTTAC-AA-T--TCG---TTCTT---------TCTACAATCTCAAACCA-TCCACTG-CATCCCAAAATAA-ACGCAACCAATCATT-CCCATAAAAACGTGAAccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacagactggcattgcgcatggcgtttttagtaatactaaaagatatataatacaagaagtttgcgttaattaatttgcaactactgaatcctccaaacaaatcacaatcaatatctagataaaaataattacaatcctgttattcggaatttattaataaaatatatgtatcatttaccaatatatagcaccttaaataaatcagaaaccttacaaaatattaaacagaataaactaagaatgggtaaaacgcatattaatttgataaaactggtgtatttaaacaaaaggttcataaattcgatttacaaattatatcagttgaaaaaaaatctatagtcataattatcatattgtgtaaggataaggtatgtttttacaattcgttctttctacaatctcaaaccatccactgcatcccaaaataaacgcaaccaatcattcccataaaaacgtgaat
gi|10 : gttgcatatcctagtttatcataagtacagctcagtagggttgatccacggatcacgcaagccggggtttaaattgccggggagtcggagttacctgagtagtaaattccgttgaatcgcttcaaaatctaaaaccaaagcttacctgatcctaacttttgagtgttaattgatagaagggatgttgaaaaattgcatgcacgtcgttttcattgaattaattgattttggggaaggagtctactcttaaggatggtttgcagccccaaaagctcaaaatgaaacttaaggatatcattgagactgaaacaaaacagcaaaataattttaaatatcagaatatgagacaattacgtttggaattaaatgtcatccttttaaggaacttcttaatgattcttgaaacagtgcataagtgtgcccaaaacaattaatcctttactgatgaacaatttcgggtgaattataatatctaaaagttactagaaatcaaattagtaagtaagaccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGCATATCT-CTAGTTCA-CGAAAATACAAC-T-TAGC-GG-TTGA-TCCATGGA-TCACGCA-GACCG---GG-TTT--GAAC-GCCGGGTG-AGTCGGA---AGTACCTGAGTAGT---AA-TCCTGTTGt
gi|11 : actgGTA---ATTGATAA--GTAA--TTGTATTATTATAGTGACATGT-GTCATATG--TCATAATTA-------------AAC--------ATAA-----GTAT------C-ATAAT---A-GCCT-----AAC------------A-T-CC
gi|12 : aagaagG-TAAGT-TTGA---ATTT-A-TTAATAACGTATATGTATCATTTAcgg
gi|13 : TAGCA---AGTAAG-----CAAA-TC-TTTTATCATAGTGACATGTG------CG-TTTA--AGTGG------------AAC--------ATAATAAT-ATATGGCATATGATAAttagttgatgccgatgacaggggaccatattccggatat
gi|14 : aGCGTATCT-GTAGTTCA-CGTAAGTACAGC-T-CAG-AAC-TTAA-TCCTCGAA-TCACGTA-AGTCG---AG-TTT--
gi|15 : ggctggaaAAAATAATATAT---ATATAA--TCAGAA-TATGAGACAATTACG-TTT-GAATCAAAT---AACCCTTTAAC-G--AA
gi|16 : gaGG-TTGA-TCCACGGA-TCTCGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AATCGGA---GTTACCCGAGTAGT
gi|17 : tTG--ACA-ATTA---AATAAAA-----ATAGACTGGCA-TTACG-CATGACGTCT--AG-TATAATAA----
gi|18 : tttacatgctatTA--ACA-ATGA---AGTAAAA----A-TAGAATGGCA-TTACG-CATGGCGTTT--AGTTATAT
gi|19 : A--TCAGAA-TATGAGACAATTGCG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AAaa
gi|2 : GTTGCACATCTTCTAGTTTA-CATAAGTACAGCCT-CAGT-GG-TTGA-TCCACGAAATCACGTA-CGCCGTGGGG-TTT--AAAT-GCCAGGTG-AGTCGGA---GTTACC-GAGTAGTA-----TTCCGTTGCA-CGCTTC-AAAC-CTAAA-CCAA-GCT--CCTGATCCAAACTT-TTGAG-CGGTTAA--AATAG-AAGGGATG-TCAAAAAAT----TGCACGTCAT---AATTGGAATTAAATTGATT-TTGGGGAAGGAGAT--A----TAA-GGATG-T---TTGCAAGCC---TTAAAAA--GCTTAAAATGAA-CTTAAGGATAT--CAATGAGA-T-AAACAAAA------CA---ATAACAAAATAAATT-T---AAA-AAAATCAGA--T-TGAGACAATTACG-TTT-GAATAAAATGTCATCCTTTTAAA-GGAAACTTTTAAATGAT-CTTGAAACTGTGGCATAT------GTGTACC-AAA------A--CAATT-AT-CACATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATA--------------------CT-AG---------T-CA-A--TTAGTA----GTAAGAAA-GTAAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACATGATA--ACA-ATGA--TAATAAAA----AATAGACT-GCA-TTACG-CATGACGTTT--AGTTATATTAA----AAT-TA-----ACAAGGAGTTTTGCGGTTTATTT-AA----TT-TGCAAC-ATTGAATCTTCC-AA-ACGA-ACGCACAATCCAAT---ATCTA-----GATAAAAAAGATTTA--AAATCTTTG-TAAGT-AGGA---ATTT-ATTTAATAA
gi|20 : atggcgGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|3 : tCACATCT-CTATGTTA-CATAAGAACAGC-C-----AGG-T-GA-TCCACGGA--CACGCA-AGCCG---GG-TTT--AAAT-GCCGGGTGGAGTCGG----GTTACCTGAGTAGTA--A--TTCCGTTGCA-C-CTTC-AAAA-CTAAA-CCAAAGCTCTTCTGATCCAA--TTATTGAG-CG-TGAA--AATAGAAAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATTCTTGGGAGAACAA-A--A----TAA--AATGGCCTGTTGCAAACCACATCAAAAACGGCT-AAAATG-AACTTAAGGATACGGCATTGAGAAT-AAACAAAACAACTCCA---G---CAAAATATTTA-A---AAA-AA--TCAGAATTTTGAATTAAGTACGTTTT-GA--TAAAT-TCAT-CTTTTATG-G--AACTTCCTAATGA-TCT--AAGCAATG-CATATA-----GTGTACCCAAATCTTTTAACCAATT-AT-C-CA-TT--ACT-G-T-AACAAATTTCGAGT--AATATAATAGC----AA------AGTGAATT-AGA------AAT-CATT-ATTAGTA-----CAAGAATTGTTAA-TTA---TATTAGATCGACAT-T-GTT-CAT-ATTTAC-ATTAC------------AAC----------AATAATGATAT------T-ATAAC---AAAGCCT--TAAAC------------ACC-CCAGCTC--A-CGGAA-TCAAAA-G------TTTAA-------------------------------AATAGACTGGCA-TTACG-CATGG-GTTT--AGTAATAT--A----TATATATCCATACAAGAGG-TTTGCGGTTT-TTT-AATATGTTGTGCAAC-ATTGAATCCTCCAAA-ACGA-AC-CACAATTCAAA---ATCTA-----GATAAAAAAGA--AA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTA
gi|4 : cgtgaGTTGCACATCT-CTAATTTA-CACAAGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGTA-AGCTG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--A--TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAA-GCTTACCTGATCCAAACTT-TTGAG-CG-TGAA--AATAG-AAGGGGTG-TCGAAAAAT----TGTACGTCATTTTCATTGGAATTAA-TTGATT-TTGGG-AAGGAG-T--C----TAAAGGATG-T---TTGCAAGCC---TCAAAAA--ACTGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAA------CAACAG---CAAAATAATTT-TTTAAAA-AA--TCAGA--TATGGGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-A--AACTTCTTAATGATTCTTGAAAACATG-CATAT------GTGTATCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-AAT-AGA------AAT-CA-A-ttagtgatgtcgatacagggggccatattccggaatat
gi|5 : atggccg--CAATT-ATTC-CATCTTAACTCGATTACCAATTTT-GGGTGG----TAAT-GCTATCAATACTCTAGTT-AATGAGACACACCAATTCA-ACATTAGTAGTAATTAAGA---GTAAA-TTTGTTTATTATA-TGACAT-TGTAC-CAT-ATT---AATCACGAAGTGTAGACGAACGAGAATAGATAATAGT-A-AG------TAATAGTTTAAGACCTTAATGAACCCAGATAAATGTA-CATCAGC-CCCATCGGACCTATAATTGTCC---TTTAACG-GGTAGAACAGATGAAGTAATAAAATCACGATA---TGGCACTTACGTCATGGCGTTT--AGTTATA-TA----------A---ATACAA-GAG-TTTGCGGTTTAATTAAA----TTGTGCAAT-CTTGGATCATCC-AACACGACAC-CATAAAC--ATGTCATCTATGGAGGATATAAAAG---TAACCAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAATTTATta
gi|6 : tacatttatcataaaccACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAATT--TCGATTTTCTT------TTTTA-ATAATTTT---CGA-TCC-CTGCCATCT--AAATAAGACT---CC-AT-ATTCTCCATGAGAAC-TGAAaaagatg
gi|7 : aataaagcttgaaaagGGTGTGTGTCTTTAC-AATTCTTTA---TTCTTAATCAATTCTCTACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCCCCATGAGAACGTGActt
gi|8 : ctaacgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattattgcttttAGCTTA-C-TAAATACAAC-TTCAGCAGT-TTGAATCCGGTGA-TCAC-TATATTCT---GG-TTTTTAAAT-GCCGTTTG-AGTCGGAGTTGTTAC--GA-TAATATCAATTTCTATTGCA-CGCCTCGAAAA-CTAAG-CCTAGGCTTAC------------T-TTCAGTTG-TACA--AAGAG-A--GGATATTCGAAAAAA---GTGC
gi|9 : ACAATTACG-TTT-GAATTAAATGTCATCCTTCTAAGAA--AATTTCTTAATGATTCTTTAAACAATG-CATATACATGTATGTACCCAAA------A--CAAT---T-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAA
Alignments
lowQualScore : 11 111 22222 1 11 2222 1 1 333333333 11 22222 111 111 1 11 111 333333333333333 11111 11 3333333 222222222 1 333333333333333 2222222 1111 22222 222 111 55555555555555555555555555555555555555555555555 33333333 111 111 5555555555555555 2222 1 33333333 33333333333333333333 11111 333333333333333333 1 1 2222 1 1 1 1 1 1 1111111 22222 2222222 111 11 1 1 1 11 11 222 11 6666666666666666666 1 11 11 222 1 22 1 11 222 444444444 1 1 11 1 4444444
lowQualScore : 6 5 6 5 5 99 4 4 4 5 888 5 66 5 5 000 3 66666 8 8 8 8 3 44 1 5 8 8 8 1 11 8 0 8 7777 3 2 0 0 6 999999999 22 77777 3 777 777 0 3 3 33 000 888888888888888 88888 8 99 44 3 5 5 4 8888 11 0 1 8 1111111 333333333 6 6 6 99 6 3 3 1 222222222222222 88 1 8 3333333 8 5555 11111 444 88 444 5 44444444444444444444444444444444444444444444444 0 8 0 00000000 777 6 777 0 6666666666666666 1111 7 3 00000000 99999999999999999999 55555 6 6 99 555555555555555555 2 0 2 44 0 1111 5 0 0 0 0 0 0 8888888 55555 4444444 3 8 99 444 8 8 9 7 88 1 1 5 5 5 66 1 1 88 000 1 1 88 1 4444444444444444444 1 5 1 88 88 111 5 22 1 00 3 7 88 333 888888888 7 7 3 3 7 3 88 3 8888888 6 6 6
lowQualScore : . . . . . .. . . . . ... . .. . . ... . ..... . . . . . .. . . . . . . .. . . . .... . . . . . ......... .. ..... . ... ... . . . .. ... ............... ..... . .. .. . . . . .... .. . . . ....... ......... . . . .. . . . . ............... .. . . ....... . .... ..... ... .. ... . ............................................... . . . ........ ... . ... . ................ .... . . ........ .................... ..... . . .. .................. . . . .. . .... . . . . . . . ....... ..... ....... . . .. ... . . . . .. . . . . . .. . . .. ... . . .. . ................... . . . .. .. ... . .. . .. . . .. ... ......... . . . . . . .. . ....... . . .
lowQualScore : 7 7 3 0 0 44 4 4 4 0 888 0 99 7 7 000 6 33333 0 0 0 0 6 88 0 6 0 0 0 0 00 0 8 0 6666 2 5 0 0 5 555555555 55 22222 2 555 000 8 2 2 88 222 888888888888888 22222 0 22 00 5 7 7 3 1111 66 8 0 0 4444444 222222222 7 7 7 22 7 3 5 0 666666666666666 66 0 0 8888888 0 4444 55555 666 88 888 0 66666666666666666666666666666666666666666666666 8 0 8 22222222 555 5 000 8 2222222222222222 7777 3 3 77777777 77777777777777777777 88888 7 7 22 999999999999999999 5 0 5 22 0 2222 0 0 2 0 0 0 0 0000000 00000 8888888 2 0 00 000 0 0 8 3 55 0 0 0 5 0 55 0 0 00 555 0 0 00 0 5555555555555555555 0 5 0 00 55 555 0 00 0 00 3 3 33 333 333333333 3 3 7 3 3 3 33 3 3333333 7 7 7
consensus : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
Reference ( family-139 ) : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
gi|1 : GTTGCATATC--CTAGTTTATCATAAGTACAGC-T-CAGTAGGGTTGA-TCCACGGA-TCACGCA-AGCCG---GGGTTT--AAATTGCCGGG-G-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGAATCGCTTC-AAAATCTAAAACCAAAGCTTACCTGATCCTAACTT-TTGAG-TG-TTAATTGATAG-AAGGGATG-TTGAAAAATTGCATGCACGTCGTTTTCATTG-AATTAA-TTGATT-TTGGGGAAGGAG-TCTACTCTTAA-GGATGGT---TTGCA-GCC---CCAAAA---GCTCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAAAA------CA---G---CAAAATAATTT-T---AAA-TA--TCAGAA-TATGAGACAATTACG-TTTGGAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAGTG-CATA-A-----GTGTGCCCAAA------A--CAATTAAT-C-C-TTT--ACT-GATGAACAA-TTTCGGGTGAATTATAATATCTA--AA------AGTT-ACT-AGA------AAT-CA-A-ATTAGTA---AGTAAGA
gi|1 : AA----AACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATATA---ATACAAGAAG-TTTGCG--TTAATT-AA----TT-TGCAACTACTGAATCCTCC-AA-ACAA-AT-CACAATC-AAT---ATCTA-----GATAAAAATAA-TTA--CAATCCT-G-TTATT-CGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAA--AATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGT---GTATTTAAACAAAAGGTT--CATAAATTC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT--ATGTTTTTAC-AA-T--TCG---TTCTT---------TCTACAATCTCAAACCA-TCCACTG-CATCCCAAAATAA-ACGCAACCAATCATT-CCCATAAAAACGTGAAccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacagactggcattgcgcatggcgtttttagtaatactaaaagatatataatacaagaagtttgcgttaattaatttgcaactactgaatcctccaaacaaatcacaatcaatatctagataaaaataattacaatcctgttattcggaatttattaataaaatatatgtatcatttaccaatatatagcaccttaaataaatcagaaaccttacaaaatattaaacagaataaactaagaatgggtaaaacgcatattaatttgataaaactggtgtatttaaacaaaaggttcataaattcgatttacaaattatatcagttgaaaaaaaatctatagtcataattatcatattgtgtaaggataaggtatgtttttacaattcgttctttctacaatctcaaaccatccactgcatcccaaaataaacgcaaccaatcattcccataaaaacgtgaat
gi|10 : gttgcatatcctagtttatcataagtacagctcagtagggttgatccacggatcacgcaagccggggtttaaattgccggggagtcggagttacctgagtagtaaattccgttgaatcgcttcaaaatctaaaaccaaagcttacctgatcctaacttttgagtgttaattgatagaagggatgttgaaaaattgcatgcacgtcgttttcattgaattaattgattttggggaaggagtctactcttaaggatggtttgcagccccaaaagctcaaaatgaaacttaaggatatcattgagactgaaacaaaacagcaaaataattttaaatatcagaatatgagacaattacgtttggaattaaatgtcatccttttaaggaacttcttaatgattcttgaaacagtgcataagtgtgcccaaaacaattaatcctttactgatgaacaatttcgggtgaattataatatctaaaagttactagaaatcaaattagtaagtaagaccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGCATATCT-CTAGTTCA-CGAAAATACAAC-T-TAGC-GG-TTGA-TCCATGGA-TCACGCA-GACCG---GG-TTT--GAAC-GCCGGGTG-AGTCGGA---AGTACCTGAGTAGT---AA-TCCTGTTGt
gi|11 : actgGTA---ATTGATAA--GTAA--TTGTATTATTATAGTGACATGT-GTCATATG--TCATAATTA-------------AAC--------ATAA-----GTAT------C-ATAAT---A-GCCT-----AAC------------A-T-CC
gi|12 : aagaagG-TAAGT-TTGA---ATTT-A-TTAATAACGTATATGTATCATTTAcgg
gi|13 : TAGCA---AGTAAG-----CAAA-TC-TTTTATCATAGTGACATGTG------CG-TTTA--AGTGG------------AAC--------ATAATAAT-ATATGGCATATGATAAttagttgatgccgatgacaggggaccatattccggatat
gi|14 : aGCGTATCT-GTAGTTCA-CGTAAGTACAGC-T-CAG-AAC-TTAA-TCCTCGAA-TCACGTA-AGTCG---AG-TTT--
gi|15 : ggctggaaAAAATAATATAT---ATATAA--TCAGAA-TATGAGACAATTACG-TTT-GAATCAAAT---AACCCTTTAAC-G--AA
gi|16 : gaGG-TTGA-TCCACGGA-TCTCGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AATCGGA---GTTACCCGAGTAGT
gi|17 : tTG--ACA-ATTA---AATAAAA-----ATAGACTGGCA-TTACG-CATGACGTCT--AG-TATAATAA----
gi|18 : tttacatgctatTA--ACA-ATGA---AGTAAAA----A-TAGAATGGCA-TTACG-CATGGCGTTT--AGTTATAT
gi|19 : A--TCAGAA-TATGAGACAATTGCG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AAaa
gi|2 : GTTGCACATCTTCTAGTTTA-CATAAGTACAGCCT-CAGT-GG-TTGA-TCCACGAAATCACGTA-CGCCGTGGGG-TTT--AAAT-GCCAGGTG-AGTCGGA---GTTACC-GAGTAGTA-----TTCCGTTGCA-CGCTTC-AAAC-CTAAA-CCAA-GCT--CCTGATCCAAACTT-TTGAG-CGGTTAA--AATAG-AAGGGATG-TCAAAAAAT----TGCACGTCAT---AATTGGAATTAAATTGATT-TTGGGGAAGGAGAT--A----TAA-GGATG-T---TTGCAAGCC---TTAAAAA--GCTTAAAATGAA-CTTAAGGATAT--CAATGAGA-T-AAACAAAA------CA---ATAACAAAATAAATT-T---AAA-AAAATCAGA--T-TGAGACAATTACG-TTT-GAATAAAATGTCATCCTTTTAAA-GGAAACTTTTAAATGAT-CTTGAAACTGTGGCATAT------GTGTACC-AAA------A--CAATT-AT-CACATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATA--------------------CT-AG---------T-CA-A--TTAGTA----GTAAGAAA-GTAAAATTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACATGATA--ACA-ATGA--TAATAAAA----AATAGACT-GCA-TTACG-CATGACGTTT--AGTTATATTAA----AAT-TA-----ACAAGGAGTTTTGCGGTTTATTT-AA----TT-TGCAAC-ATTGAATCTTCC-AA-ACGA-ACGCACAATCCAAT---ATCTA-----GATAAAAAAGATTTA--AAATCTTTG-TAAGT-AGGA---ATTT-ATTTAATAA
gi|20 : atggcgGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|3 : tCACATCT-CTATGTTA-CATAAGAACAGC-C-----AGG-T-GA-TCCACGGA--CACGCA-AGCCG---GG-TTT--AAAT-GCCGGGTGGAGTCGG----GTTACCTGAGTAGTA--A--TTCCGTTGCA-C-CTTC-AAAA-CTAAA-CCAAAGCTCTTCTGATCCAA--TTATTGAG-CG-TGAA--AATAGAAAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATTCTTGGGAGAACAA-A--A----TAA--AATGGCCTGTTGCAAACCACATCAAAAACGGCT-AAAATG-AACTTAAGGATACGGCATTGAGAAT-AAACAAAACAACTCCA---G---CAAAATATTTA-A---AAA-AA--TCAGAATTTTGAATTAAGTACGTTTT-GA--TAAAT-TCAT-CTTTTATG-G--AACTTCCTAATGA-TCT--AAGCAATG-CATATA-----GTGTACCCAAATCTTTTAACCAATT-AT-C-CA-TT--ACT-G-T-AACAAATTTCGAGT--AATATAATAGC----AA------AGTGAATT-AGA------AAT-CATT-ATTAGTA-----CAAGAATTGTTAA-TTA---TATTAGATCGACAT-T-GTT-CAT-ATTTAC-ATTAC------------AAC----------AATAATGATAT------T-ATAAC---AAAGCCT--TAAAC------------ACC-CCAGCTC--A-CGGAA-TCAAAA-G------TTTAA-------------------------------AATAGACTGGCA-TTACG-CATGG-GTTT--AGTAATAT--A----TATATATCCATACAAGAGG-TTTGCGGTTT-TTT-AATATGTTGTGCAAC-ATTGAATCCTCCAAA-ACGA-AC-CACAATTCAAA---ATCTA-----GATAAAAAAGA--AA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTA
gi|4 : cgtgaGTTGCACATCT-CTAATTTA-CACAAGTACAGC-T-CAGT-GG-TTGA-TCCACGGA-TCACGTA-AGCTG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--A--TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAA-GCTTACCTGATCCAAACTT-TTGAG-CG-TGAA--AATAG-AAGGGGTG-TCGAAAAAT----TGTACGTCATTTTCATTGGAATTAA-TTGATT-TTGGG-AAGGAG-T--C----TAAAGGATG-T---TTGCAAGCC---TCAAAAA--ACTGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAA------CAACAG---CAAAATAATTT-TTTAAAA-AA--TCAGA--TATGGGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-A--AACTTCTTAATGATTCTTGAAAACATG-CATAT------GTGTATCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-AAT-AGA------AAT-CA-A-ttagtgatgtcgatacagggggccatattccggaatat
gi|5 : atggccg--CAATT-ATTC-CATCTTAACTCGATTACCAATTTT-GGGTGG----TAAT-GCTATCAATACTCTAGTT-AATGAGACACACCAATTCA-ACATTAGTAGTAATTAAGA---GTAAA-TTTGTTTATTATA-TGACAT-TGTAC-CAT-ATT---AATCACGAAGTGTAGACGAACGAGAATAGATAATAGT-A-AG------TAATAGTTTAAGACCTTAATGAACCCAGATAAATGTA-CATCAGC-CCCATCGGACCTATAATTGTCC---TTTAACG-GGTAGAACAGATGAAGTAATAAAATCACGATA---TGGCACTTACGTCATGGCGTTT--AGTTATA-TA----------A---ATACAA-GAG-TTTGCGGTTTAATTAAA----TTGTGCAAT-CTTGGATCATCC-AACACGACAC-CATAAAC--ATGTCATCTATGGAGGATATAAAAG---TAACCAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAATTTATta
gi|6 : tacatttatcataaaccACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAATT--TCGATTTTCTT------TTTTA-ATAATTTT---CGA-TCC-CTGCCATCT--AAATAAGACT---CC-AT-ATTCTCCATGAGAAC-TGAAaaagatg
gi|7 : aataaagcttgaaaagGGTGTGTGTCTTTAC-AATTCTTTA---TTCTTAATCAATTCTCTACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCCCCATGAGAACGTGActt
gi|8 : ctaacgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattattgcttttAGCTTA-C-TAAATACAAC-TTCAGCAGT-TTGAATCCGGTGA-TCAC-TATATTCT---GG-TTTTTAAAT-GCCGTTTG-AGTCGGAGTTGTTAC--GA-TAATATCAATTTCTATTGCA-CGCCTCGAAAA-CTAAG-CCTAGGCTTAC------------T-TTCAGTTG-TACA--AAGAG-A--GGATATTCGAAAAAA---GTGC
gi|9 : ACAATTACG-TTT-GAATTAAATGTCATCCTTCTAAGAA--AATTTCTTAATGATTCTTTAAACAATG-CATATACATGTATGTACCCAAA------A--CAAT---T-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAA
blockSeqs : T . G C T CA . A A T TGG . TT . G GTT T TCAAT . G . . A CT A A A T G T . A T A T G A C G ATA AG GCCTG A ACA ACG T A A GG AT CAACTCCAG TTTA T AA AT A T . G GGA TT T G TACATGT TCTTTTAAC . T A TA C T T A GCTATCAATACTCT GA C G ACACACC T TTA GTAAT ATT AA GTT G TGTACCATATTAATCACGAAGTGTAGACGAACGAGAATAGA G GGCATATG TTA G TAA CCAGATAAATGTACA CCC T C TGTCC CGGGTAGAACAGATGAAGT TCACG C T . TATATATATCCA G T G AT A TATG G . A C C G ATGTC TGGAG ATTTA T T AA AAT G T A A AT C G C A . T T C GT GGA A T CA T AGTGAGAGGCACACTAGGA T . G GT . . C GT A GT A T CT ATT AATCAATTC T A G A A C . G TCC C C G
blockSeqs : . . G . . C . . . . . . . . . . C AA . . . . G TA A A . . . G . . . G T G . . A AA G T A . A G A A . AT CAATAA AT . . A A . . G AA TT A . TA A . . . . . . A A AGCTAAA T T . A . ACA AT AA A TGT G GTGGTCCATGATTTACAATTACAACA . TG . A T ACC TC . . G . A . . . TTAAAATTA G . G AA . . G . . . . . CAAT . TAAC T . T . . . T . G . T . . TTT . . A . . . . . CCC . C .
blockSeqs : . . A . . A . . . . . . . . . . T A . . . . . TA A . . . . G . . . . . G . . . TC . T A . A . . . . T CAACAG T . . A T . . G G T C . T A . . . . . . T A AGCAA T A . A . A AG . A TT T TGTTCATATTTACATTACAAC . TA . G T AC A . . . TAAA . . G T . . . . . . . . CAAA . AAA T . A . . . .
blockSeqs : . . A . . T . . . . . . . . . . T A . . . . . . . . . . . A . . . . A . . . A . . G G T A . T A . . . . . . T . A . A . . . G . A A . GTGCGTTTAAGTGGAACA . T A . . . . A . . .
blockSeqs : . . A . . T . . . . . . . . . . . . . . . . . . G . . . . . . T . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . A
blockSeqs : . . T . . . . . . .
blockSeqs : . . .
blockSeqCons : N* A**** ** G*** A* A** A* TGCCGTATTTAAATTACAACA************************** TG****** **
originalCons : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGTAGG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTA--AA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATGTGGTC-CATGATTTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
finalCons : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGN-GG-TTGA-TCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTAA----TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAATG---TGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----TAA-GGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAAAA------CA---G---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATTGCCGTATTTAAATTACAACA--------------------------TAATAAT-ATATTG------ATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
Alignments
lowQualScore : 111 1 11 3333 1 1 44444444444 111 111 111 1 11 111 111 222222 111 11111 3333333 222222222 1 333333333333333 2222222 1111 22222 222 111 66666666666666666666666666666666666666666666666 33333333 111 111 5555555555555555 2222 1 33333333 33333333333333333333 11111 333333333333333333 1 1 2222 1 1 1 1 1 1 1111111 22222 2222222 111 11 1 1 1 11 11 222 11 6666666666666666666 1 11 11 222 1 22 1 11 222 444444444 1 1 11 1 4444444
lowQualScore : 6 5 6 777 777 66 4 5 888 5 66 5 5 000 3 3 8 8 8 8 6 3 44 1 5 8 8 8 1 11 8 0 8 0000 3 2 0 0 2 00000000000 2 55 777 3 777 777 0 3 3 33 000 777 888888 777 88888 8 99 6 3 5 5 4 8888 11 0 1 8 1111111 333333333 6 6 6 99 6 3 3 1 222222222222222 88 1 8 3333333 8 5555 11111 444 88 444 5 99999999999999999999999999999999999999999999999 0 8 0 00000000 777 6 777 0 6666666666666666 1111 7 3 00000000 99999999999999999999 55555 6 6 99 555555555555555555 2 0 2 44 0 1111 5 0 0 0 0 0 0 8888888 55555 4444444 3 8 99 444 8 8 9 7 88 1 1 5 5 5 66 1 1 88 000 1 1 88 1 4444444444444444444 1 5 1 88 88 111 5 22 1 00 3 7 88 333 888888888 7 7 3 3 7 3 88 3 8888888 6 6 6
lowQualScore : . . . ... ... .. . . ... . .. . . ... . . . . . . . . .. . . . . . . .. . . . .... . . . . . ........... . .. ... . ... ... . . . .. ... ... ...... ... ..... . .. . . . . . .... .. . . . ....... ......... . . . .. . . . . ............... .. . . ....... . .... ..... ... .. ... . ............................................... . . . ........ ... . ... . ................ .... . . ........ .................... ..... . . .. .................. . . . .. . .... . . . . . . . ....... ..... ....... . . .. ... . . . . .. . . . . . .. . . .. ... . . .. . ................... . . . .. .. ... . .. . .. . . .. ... ......... . . . . . . .. . ....... . . .
lowQualScore : 7 7 3 111 111 11 4 0 888 0 99 7 7 000 9 3 0 0 0 0 0 8 88 0 6 0 0 0 0 00 0 8 0 4444 2 5 0 0 5 55555555555 5 00 555 2 555 000 8 2 2 88 222 555 888888 555 22222 0 22 7 5 7 7 3 1111 66 8 0 0 4444444 222222222 7 7 7 22 7 3 5 0 666666666666666 66 0 0 8888888 0 4444 55555 666 88 888 0 00000000000000000000000000000000000000000000000 8 0 8 22222222 555 5 000 8 2222222222222222 7777 3 3 77777777 77777777777777777777 88888 7 7 22 999999999999999999 5 0 5 22 0 2222 0 0 2 0 0 0 0 0000000 00000 8888888 2 0 00 000 0 0 8 3 55 0 0 0 5 0 55 0 0 00 555 0 0 00 0 5555555555555555555 0 5 0 00 55 555 0 00 0 00 3 3 33 333 333333333 3 3 7 3 3 3 33 3 3333333 7 7 7
consensus : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGC--GGTT--GATCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTAA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----T-AAGGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAA---AA------CAG---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACATGTGT-CCAT-AT-TTA-AATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
Reference ( family-139 ) : GTTGCACATCT-CTAGTTTA-CGTAAGTACAGC-T-CAGN--GGTT--GATCCACGGA-TCACGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTAA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CCAAAGCTTACCTGATCCAAACTT-TTGAG-CG-TNAA--AATAG-AAGGGATG-TCGAAAAAT---GTGCACGTCATTTTCATTGGAATTAA-TTGATT-TTGGGGAAGGAG-T--A----T-AAGGATGGT---TTGCAAGCC---TCAAAAA--GCTNAAAATGAAACTTAAGGATAT--CATTGAGAAT-AAACAA---AA------CAG---CAAAATAATTT-T---AAA-AA--TCAGAA-TATGAGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAATG-CATATA-----GTGTACCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-ANT-AGA------AAT-CA-A-ATTAGTA---AGTAAGAA--GTAAA-TTGTTTTATTATAGTGACAT-TG--CCGT-AT-TTA-AATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCC---TTTAACG-GGTA--ACA-ATGA--TAATAAAA----AATAGACTGGCA-TTACG-CATGGCGTTT--AGTTATATTAA----TATATA---ATACAAGGAG-TTTGCGGTTTANTT-AA----TTGTGCAAC-ATTGAATCCTCC-AA-ACGA-AC-CACAATCCAAT---ATCTA-----GATAAAAAAGA-TTA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAAATAGCATTAANCAGAANAAACTAAGCAATGAGGTAAAACGCATATTANTTTGNTANAAGTCTGGTGGAGTATTTAAANAAAANGTTCACATANACTCAGTGAGAGGCACACTAGGAGGTTTACAANTTATANCAGGTTTGAAAAAAAATCTATAGTCATAATTATCATATTCGTGNNAGGANAAGGTG-GTGTCTTTAC-AATT--TCG---TTCTT------TTCTCTACAATCTCAAACGA-TCCACTG-CATCC--AAATAA-AC----CC-ATCATTCCCCATGAGAACGTGAA
gi|1 : GTTGCATATC--CTAGTTTATCATAAGTACAGC-T-CAGTAGGGTT--GATCCACGGA-TCACGCA-AGCCG---GGGTTT--AAATTGCCGGG-G-AGTCGGA---GTTACCTGAGTAGTAAATTCCGTTGAATCGCTTC-AAAATCTAAAACCAAAGCTTACCTGATCCTAACTT-TTGAG-TG-TTAATTGATAG-AAGGGATG-TTGAAAAATTGCATGCACGTCGTTTTCATTG-AATTAA-TTGATT-TTGGGGAAGGAG-TCTACTCTT-AAGGATGGT---TTGCA-GCC---CCAAAA---GCTCAAAATGAAACTTAAGGATAT--CATTGAGACTGAAACAA---AA------CAG---CAAAATAATTT-T---AAA-TA--TCAGAA-TATGAGACAATTACG-TTTGGAATTAAATGTCATCCTTTTAAG-G--AACTTCTTAATGATTCTTGAAACAGTG-CATA-A-----GTGTGCCCAAA------A--CAATTAAT-C-C-TTT--ACT-GATGAACAA-TTTCGGGTGAATTATAATATCTA--AA------AGTT-ACT-AGA------AAT-CA-A-ATTAGTA---AGTAAGA
gi|1 : AA----AACAGACTGGCA-TTGCG-CATGGCGTTTTTAGTAATACTAAAAGATATATA---ATACAAGAAG-TTTGCG--TTAATT-AA----TT-TGCAACTACTGAATCCTCC-AA-ACAA-AT-CACAATC-AAT---ATCTA-----GATAAAAATAA-TTA--CAATCCT-G-TTATT-CGGA---ATTT-A-TTAATAAAATATATGTATCATTTACCAATATATAGCACCTTAAATAAATCAGAAACCTTACAA--AATATTAAACAGAATAAACTAAG-AATG-GGTAAAACGCATATTAATTTGATAAAA--CTGGT---GTATTTAAACAAAAGGTT--CATAAATTC-------------------GATTTACAAATTATATCAG--TTGAAAAAAAATCTATAGTCATAATTATCATATT-GTGTAAGGATAAGGT--ATGTTTTTAC-AA-T--TCG---TTCTT---------TCTACAATCTCAAACCA-TCCACTG-CATCCCAAAATAA-ACGCAACCAATCATT-CCCATAAAAACGTGAAccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacagactggcattgcgcatggcgtttttagtaatactaaaagatatataatacaagaagtttgcgttaattaatttgcaactactgaatcctccaaacaaatcacaatcaatatctagataaaaataattacaatcctgttattcggaatttattaataaaatatatgtatcatttaccaatatatagcaccttaaataaatcagaaaccttacaaaatattaaacagaataaactaagaatgggtaaaacgcatattaatttgataaaactggtgtatttaaacaaaaggttcataaattcgatttacaaattatatcagttgaaaaaaaatctatagtcataattatcatattgtgtaaggataaggtatgtttttacaattcgttctttctacaatctcaaaccatccactgcatcccaaaataaacgcaaccaatcattcccataaaaacgtgaat
gi|10 : gttgcatatcctagtttatcataagtacagctcagtagggttgatccacggatcacgcaagccggggtttaaattgccggggagtcggagttacctgagtagtaaattccgttgaatcgcttcaaaatctaaaaccaaagcttacctgatcctaacttttgagtgttaattgatagaagggatgttgaaaaattgcatgcacgtcgttttcattgaattaattgattttggggaaggagtctactcttaaggatggtttgcagccccaaaagctcaaaatgaaacttaaggatatcattgagactgaaacaaaacagcaaaataattttaaatatcagaatatgagacaattacgtttggaattaaatgtcatccttttaaggaacttcttaatgattcttgaaacagtgcataagtgtgcccaaaacaattaatcctttactgatgaacaatttcgggtgaattataatatctaaaagttactagaaatcaaattagtaagtaagaccaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGCATATCT-CTAGTTCA-CGAAAATACAAC-T-TAGC--GGTT--GATCCATGGA-TCACGCA-GACCG---GG-TTT--GAAC-GCCGGGTG-AGTCGGA---AGTACCTGAGTAGTAA-TCCTGTTGt
gi|11 : actgGTA---ATTGATAA--GTAA--TTGTATTATTATAGTGACATGTG--TCAT-ATGTCATAATTA-------------AAC--------ATAA-----GTAT------C-ATAAT---A-GCCT-----AAC------------A-T-CC
gi|12 : aagaagG-TAAGT-TTGA---ATTT-A-TTAATAACGTATATGTATCATTTAcgg
gi|13 : TAGCA---AGTAAG-----CAAA-TC-TTTTATCATAGTGACATGTG--C----GT-TTA-AG-TGG------------AAC--------ATAATAAT-ATATGGCATATGATAAttagttgatgccgatgacaggggaccatattccggatat
gi|14 : aGCGTATCT-GTAGTTCA-CGTAAGTACAGC-T-CAGA--ACTT--AATCCTCGAA-TCACGTA-AGTCG---AG-TTT--
gi|15 : ggctggaaAAAATAATATAT---ATATAA--TCAGAA-TATGAGACAATTACG-TTT-GAATCAAAT---AACCCTTTAAC-G--AA
gi|16 : ga--GGTT--GATCCACGGA-TCTCGTA-AGCCG---GG-TTT--AAAT-GCCGGGTG-AATCGGA---GTTACCCGAGTAGT
gi|17 : tTG--ACA-ATTA---AATAAAA-----ATAGACTGGCA-TTACG-CATGACGTCT--AG-TATAATAA----
gi|18 : tttacatgctatTA--ACA-ATGA---AGTAAAA----A-TAGAATGGCA-TTACG-CATGGCGTTT--AGTTATAT
gi|19 : A--TCAGAA-TATGAGACAATTGCG-TTT-GAATTAAATGTCATCCTTTTAAG-G--AAaa
gi|2 : GTTGCACATCTTCTAGTTTA-CATAAGTACAGCCT-CAGT--GGTT--GATCCACGAAATCACGTA-CGCCGTGGGG-TTT--AAAT-GCCAGGTG-AGTCGGA---GTTACC-GAGTAGTA--TTCCGTTGCA-CGCTTC-AAAC-CTAAA-CCAA-GCT--CCTGATCCAAACTT-TTGAG-CGGTTAA--AATAG-AAGGGATG-TCAAAAAAT----TGCACGTCAT---AATTGGAATTAAATTGATT-TTGGGGAAGGAGAT--A----T-AAGGATG-T---TTGCAAGCC---TTAAAAA--GCTTAAAATGAA-CTTAAGGATAT--CAATGAGA-T-AAACAA---AA------CAATAACAAAATAAATT-T---AAA-AAAATCAGA--T-TGAGACAATTACG-TTT-GAATAAAATGTCATCCTTTTAAA-GGAAACTTTTAAATGAT-CTTGAAACTGTGGCATAT------GTGTACC-AAA------A--CAATT-AT-CACATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATA--------------------CT-AG---------T-CA-A--TTAGTA----GTAAGAAA-GTAAAATTGTTTTATTATAGTGACATGTGGTCCATGAT-TTACAATTAC------------AAC--------ATAATAAT-ATAT------TGATAAT---AGGCCTT--TAAAC------------A-C-CCAGC-C--ATCGGAC-TATAAT-GTCCACTTTTAACATGATA--ACA-ATGA--TAATAAAA----AATAGACT-GCA-TTACG-CATGACGTTT--AGTTATATTAA----AAT-TA-----ACAAGGAGTTTTGCGGTTTATTT-AA----TT-TGCAAC-ATTGAATCTTCC-AA-ACGA-ACGCACAATCCAAT---ATCTA-----GATAAAAAAGATTTA--AAATCTTTG-TAAGT-AGGA---ATTT-ATTTAATAA
gi|20 : atggcgGTACAGC-T-CAGT--GGTT--GATCCACGGA-TCACGtttattaattgatgtcgatgtcaggggaccatattcccggatat
gi|3 : tCACATCT-CTATGTTA-CATAAGAACAGC---CAGG-----T--GATCCACGGA--CACGCA-AGCCG---GG-TTT--AAAT-GCCGGGTGGAGTCGG----GTTACCTGAGTAGTAA-TTCCGTTGCA-C-CTTC-AAAA-CTAAA-CCAAAGCTCTTCTGATCCAA--TTATTGAG-CG-TGAA--AATAGAAAGGGATG-TCGAAAAAT---ATGCACGTCATTTTCATTGGAATTAA-TTGATTCTTGGGAGAACAA-A--A----T-AA-AATGGCCTGTTGCAAACCACATCAAAAACGGCT-AAAATG-AACTTAAGGATACGGCATTGAGAAT-AAACAA---AACAACTCCAG---CAAAATATTTA-A---AAA-AA--TCAGAATTTTGAATTAAGTACGTTTT-GA--TAAAT-TCAT-CTTTTATG-G--AACTTCCTAATGA-TCT--AAGCAATG-CATATA-----GTGTACCCAAATCTTTTAACCAATT-AT-C-CA-TT--ACT-G-T-AACAAATTTCGAGT--AATATAATAGC----AA------AGTGAATT-AGA------AAT-CATT-ATTAGTA-----CAAGAATTGTTAA-TTA---TATTAGATCGACAT-TGT-TCAT-AT-TTA-CATTAC------------AAC----------AATAATGATAT------T-ATAAC---AAAGCCT--TAAAC------------ACC-CCAGCTC--A-CGGAA-TCAAAA-G------TTTAA-------------------------------AATAGACTGGCA-TTACG-CATGG-GTTT--AGTAATAT--A----TATATATCCATACAAGAGG-TTTGCGGTTT-TTT-AATATGTTGTGCAAC-ATTGAATCCTCCAAA-ACGA-AC-CACAATTCAAA---ATCTA-----GATAAAAAAGA--AA--CAATCTTTG-TAAGT-AGGA---ATTT-A-TTATTAAAAT-TTTGT-TCATTTA
gi|4 : cgtgaGTTGCACATCT-CTAATTTA-CACAAGTACAGC-T-CAGT--GGTT--GATCCACGGA-TCACGTA-AGCTG---GG-TTT--AAAT-GCCGGGTG-AGTCGGA---GTTACCTGAGTAGTAA-TTCCGTTGCA-CGCTTC-AAAA-CTAAA-CC-AAGCTTACCTGATCCAAACTT-TTGAG-CG-TGAA--AATAG-AAGGGGTG-TCGAAAAAT----TGTACGTCATTTTCATTGGAATTAA-TTGATT-TT-GGGAAGGAG-T--C----TAAAGGAT-GT---TTGCAAGCC---TCAAAAA--ACTGAAAATGAAACTTAAGAATAT--CATTGAGAAT-AAACAAAACAA------CAG---CAAAATAATTT-TTTAAAA-AA--TCAG-A-TATGGGACAATTACG-TTT-GAATTAAATGTCATCCTTTTAAG-A--AACTTCTTAATGATTCTTGAAAACATG-CATAT------GTGTATCCAAA------A--CAATT-AT-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAAATATAATAGCTA--AA------AGTT-AAT-AGA------AAT-CA-A-ttagtgatgtcgatacagggggccatattccggaatat
gi|5 : atggccg--CAATT-ATTC-CATCTTAACTCGATTACCAATTTT-GGGTGG----TAAT-GCTATCAATACTCTAGTT-AATGAGACACACCAATTCA-ACATTAGTAGTAATTAAGA---GTAAA-TTTGTTTATTATA-TGACAT-TGTACCAT-AT-T---AATCACGAAGTGTAGACGAACGAGAATAGATAATAGT-A-AG------TAATAGTTTAAGACCTTAATGAACCCAGATAAATGTA-CATCAGC-CCCATCGGACCTATAATTGTCC---TTTAACG-GGTAGAACAGATGAAGTAATAAAATCACGATA---TGGCACTTACGTCATGGCGTTT--AGTTATA-TA----------A---ATACAA-GAG-TTTGCGGTTTAATTAAA----TTGTGCAAT-CTTGGATCATCC-AACACGACAC-CATAAAC--ATGTCATCTATGGAGGATATAAAAG---TAACCAATCTTTGTTAAGTAAGGAAATATTTGA-TTAATATAATTTATta
gi|6 : tacatttatcataaaccACAAATAGCATTAACCAGAAGAAACTAAACAATGAGGTAAAACG-ATATT-TTTTGTTACAAGTCTGGTGGAGTATTTAAAAAAAATGTTCACATATACTCAGTGAGAGGCACACTAGGAGGTTTACAATTTA-AGCAAGTTTG--AAAAAATCTATAGTCATA---ATCATATTCGTGGTAGGAAAAGGTG-GTGTCTTTACAAATT--TCGATTTTCTT------TTTTA-ATAATTTT---CGA-TCC-CTGCCATCT--AAATAAGACT---CC-AT-ATTCTCCATGAGAAC-TGAAaaagatg
gi|7 : aataaagcttgaaaagGGTGTGTGTCTTTAC-AATTCTTTA---TTCTTAATCAATTCTCTACAATCTCAAACAAATCCACTG-CATAC--AAATAA-AC----CCCATCATTCCCCATGAGAACGTGActt
gi|8 : ctaacgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattattgcttttAGCTTA-C-TAAATACAAC-TTCAGC--AGTTTGAATCCGGTGA-TCAC-TATATTCT---GG-TTTTTAAAT-GCCGTTTG-AGTCGGAGTTGTTACGATAATATCAATTTCTATTGCA-CGCCTCGAAAA-CTAAG-CCTAGGCTTAC------------T-TTCAGTTG-TACA--AAGAG-A--GGATATTCGAAAAAA---GTGC
gi|9 : ACAATTACG-TTT-GAATTAAATGTCATCCTTCTAAGAA--AATTTCTTAATGATTCTTTAAACAATG-CATATACATGTATGTACCCAAA------A--CAAT---T-C-CATTT--ACT-GAT-AACAATTTTCGAGTGAA