lowQualScore : 1 444444444 2 11 333333333 22222222 3333333333333 2222 111 55555555555 1 2222 8888888888888888888888888888888888888888888888888888 1 111
lowQualScore : 3 777777777 3 0 8 3 3 11 444444444 5 4 22222222 3 44 0 6 4 3 88 5555555555555 2222 666 11111111111 4 44 2 3 99999 6 5 1 9999 55 5555555555555555555555555555555555555555555555555555 5 888 9 1 2 888 0 0 4
lowQualScore : . ......... . . . . . .. ......... . . ........ . .. . . . . .. ............. .... ... ........... . .. . . ..... . . . .... .. .................................................... . ... . . . ... . . .
lowQualScore : 3 333333333 2 4 0 2 2 00 222222222 0 8 44444444 6 22 5 5 9 6 11 6666666666666 3333 555 99999999999 8 55 5 1 99999 9 3 1 0000 55 4444444444444444444444444444444444444444444444444444 0 333 6 1 4 999 4 2 0
consensus : GAGTAAA-CC---TTGA--AAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCNTT--GCGCAG--TC-NTGGCAAGNTTCCGGCAACTCCTGCATC-CGGAT--T-C-GTCTCCAGCCGTCTCGACTCTGTCCTGCC-ACT-GGACCAA---G-ACGAATTTCAG---GAC-GAGAGAGTGAGGTTGA-N--TN----TGCGCAANTCTTCCT-CACT-T-T-AATCNAAGTCATC--GCGCAAGTCA--TGATT-TCATCAC-CATT--CA--A-TCA------C----TACC------A--AAGCCCTGT--GGCGACGGGCGAGCGACG-AAAGCGGCAGGTGCGGATA
Reference ( gi|3 ) : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCCTT--GTGCAG--TT-ATGCCAGGGTTCCGGCAACTTCTGCATC-TGAAC--T-C-ATCTCTAGCCGTCTCGACTATGTCCTGCC-ACT-AGATCAA---G-ATGAATTTCA----GAC-AAGAGAGTGAGGTTGG-GA-GG----TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA--T-ATT-TCATCACATATT--CA--A-CCA------C----TATC------A--AAGTCCTGC--GGCGATTGGCAATCGACG-AAAACAGCAGGTGCGGATA
gi|2 : GAGTAAAACC---TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGGTTCCTT--GTGCAG--TTTATGCCAGGGTTCCGGCAACTTCTGCATC-TGAAC--T-C-ATCTCTAGCCGTCTCGACTATGTCCTGCC-ACT-AGATCAA---G-ATGAATTTCA----GACAAAGAGAGTGAGGTTGG-GA-GG----TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA--T-ATT-TCATCACATATT--CA--A-CCA------C----TATC------A--AA-TCCTGC--GGCGATTGGCAATCGACG-AAAACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC---CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGATTGATT--TAGCAAACTC-A---CAACCTTCCGGAAACTCCTGCATC-CTGCT--T-C-GTCTCCATCCGTCTTGATTCTGTCTTGTC-ATT-GGACCCA---G--CGA--TTCAG---GAC-GATAGAGTGAGGCTGA-T--TC----TGAGCAAGTCTCCCT-CACT-----------AT-------GAGCAAGTCA--TGA----CATCAC-CATC--CA--G-TCATT----C----CACC---------AAGCCCTGT--GGCGATCGGGAAGCGGCG--AAGCAGAAGGTGAGGATA
gi|6 : AGTAAA-CCCTTTT----AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGGTTGATTTAGCACAC--TT-G---CAAACATCAGACAGCTCCCGCATC-CTGGT--T-T-GTCTTCAGCCGTCTC-----------GCC-ACT-GGACC-C---G-GTGAA--TCAG---GAT-GGGAGTGCGAGCCTGA-T--TT----TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-CA--CGCAAGTCA--TGA----CATCAC-CATT--CA--ATTCAGTAATCT----TATC---------AAGCCCTGT--GGCGATGAGGAAGCGAC
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGGCTCTTT--GTGCAG--TC-CTGGTAAGGTTCCAGCAACATCTGCATC-TGGAT--T-C-ATCTCTAGCTGTCTCGACTATGTCCTGCC-ACT-AGATCAG---A-ATGAATTTCA----GAC---GAGAGTTAGGTTGG-T--GG----TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA--T-ATT-TCATCACGCACT---------CA------C----TATC------ATCAAGTCCTGC--GGCGACTGGCAATCGACG-AAAACAGCAGATGCGGATA
gi|10 : aCGGAGT-GAAA-TCCTGTAGGCGGCTCCTT--GTGCAG--TC-CTGGCAGGTTTCCGGCAACTTCTGCATC-TGGAC--T-C-ATCTCTGTCCGTCTCGACTATGTCCTACC-ACT-AGATCAA---G-ATGAATTTCA----GAT-GAGAGAGTGAGGTTGG-T--GG----CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCA
gi|9 : TTCCGACAGCCCCTGCATC-CTGAT--T-C-GTCTCCAGCCGTCTTGACTCTGTCTTGCC-AC-----TCAACCCG-GCGA--TTCAG---GAC-GAGAAAGTGAGGCTGA-T--TC----TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA--TGA----CGTCAC-CATT--CA--G-TCATC----C----TACC---------AATCCCTGT--GGCGATAGAGAAGCGGC--AAAGTAGTAGGCGAGGATA
gi|8 : cggttgaacacttgcaaccTTCCGGCAACTCCTGCATC-CTGGT--T-C-GTCGCCAGCCGTCTTGACTCTGTCTTGCCAACT-GGACC-C---G-GCGA--TTCA----GG--AGAAGAGTG----TGG-GC-TGATTCTGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCAC---GCGCAAGTCA--T-G----AATCCC--ATT--CA--G-TCATC----C----TACC------A--AA-CCCTGT--GGCGATGGGGAA--GGCGCGAAGCA-TAGGTG
gi|11 : cggttcatttagcacactcgcaaccTTCCGGCAACTCCTGCATC-CTGGT--T-C-GTCGCCAGCCGTCTTGACTCTGTCTTGCC-ACT-GGACC-C---G-GCGA--TTCAG---GAC-GAGAGAGTGAGGCTGA-T--TC----TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCAagat
gi|7 : cggttcatttagcacactcgcaaccTTCCGACAGCC-CTGCATCCTGA----T-T-GTCTCCAGCCGTCTTGACTCTTT--TG-C-ACTCACACCCG---GCA-----TTCAGGGGGAC---GAGAATGAGCT----GATTC----TGCGC-AGTCTCCCT-CACT-T-A-ATTCAAG-TCAT---GCGCAA-TCA--CGACG-TC--CAC-CATT--CGTCA-TC-------C----TACC------A--AGTCCCTGTTAGGCGATc
gi|1 : taggcggcttgattagagcacactcagaccCTGCACC---AAC--TTC-GTTTCCAGCCGTATCGACCAAGTC-TGCT-GCT--GAGCA----G-ATG--TTTTG----GGC-GAGAGAGTGAGATCGACGA-GA----TGTGCAACTCTTCCT-CACT-T-TAAATCAAGTTT-----GCGTCAGTCA--T-CTT---ATC-C-TTTTAACA--A-TCC------CTTCTTCCC------A--AAGTCCTGT--GGCGTCAGGCGAGCGAT--AAAATTGCAGGTGTGGAagagagcggccagagtagtagcgagga
gi|12 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCTGCATC-TGTCCCAT-CGATCTCTAGTCGTCTCGACTTAGTCCTACT-ATT-GGGTACA---G-AT-AGCCTCG----GAC---GAGAGTGAGGTC-A-AC-GC----TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTCA--T-CTTATCATC-C---TT--CA--A---A------C----CATCCCCCCAA--AAGCCCTGT--GGCGACAGGCGAGCGAC--AAAGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : CTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTT-A-T-TCATC-C---TT--CA--A---A------C----CATCCCCCCAA--AAGTACTGT---GCGACAGGCGAGCGACG--AAGCGACA-GTGTGGg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAAATCAGAAGTGGAACCCTTTAGGCAGTTGGTTTAGCTTTGGGAAACCTACTGGCAACTCCTGCAGC
Unaligned ( gi|16 ): CGGTTGATTTAGCACACTCGCAACCTTCCGGCAACTCCTGCACCCT
Alignments
lowQualScore : 1 1 22 1 222 22222 222222222 1111 2222222 111111 333333 11
lowQualScore : 0 0 77 6 9 5 22 3 22 666 0 5 00000 66 3 3 0 7777 3 3 3 555 3 44 000000000 6 55 3 6 99999 1 2 3 3 3 0 2 7777 3333333 7 55 777777 000000 7777 999 3 55 666 8 55 33 7 2
lowQualScore : . . .. . . . .. . .. ... . . ..... .. . . . .... . . . ... . .. ......... . .. . . ..... . . . . . . . .... ....... . .. ...... ...... .... ... . .. ... . .. .. . .
lowQualScore : 0 0 55 0 0 7 44 6 44 444 4 1 99999 22 3 8 8 1111 3 8 7 888 3 66 000000000 7 77 3 7 66666 0 9 1 1 1 8 1 2222 0000000 3 00 777777 555555 7777 444 6 00 555 2 00 22 1 2
consensus : GAGTAAA-CC-TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGG-TTCATT-A-GCGCAGTC--TGGCAANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGG--ACC-AGACGAATTTCAGGAC-GA-GAGAGTGAGGCT-GATNC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGAT-TCATCAC-CATT--CA----A-TCA------C----TACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
Reference ( family-13648 ) : GAGTAAA-CC-TTGA--AAAAATATCCGGAGTTGGAG-TCCCGTAGGCGG-TTCNTT---GCGCAGTCN-TGGCAAGNTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTCTGTCCTGC---C-ACTGG--ACCAAGACGAATTTCAGGAC-GA-GAGAGTGAGGTT-GANTN--TGCGCAANTCTTCCT-CACT-T-T-AATCNAAGTCATC--GCGCAAGTCA-TGATTTCATCAC-CATT--CA----A-TCA------C----TACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCGGCAGGTGCGGATA
gi|1 : CTGCA-CCAACT----TCG-TTTCCAGCCGTATCGACCAAGTC-TGC---T-GCTGA--GC--AGATG--TTTTGGG-C-GA-GAGAGTGAGATC-GACGAGATGTGCAACTCTTCCT-CACT-T-T-AAATCAAGT--TT--GCGTCAGTC----ATCTTATC-C-TTTTAACA----A-TCC------CTTCTTCCCA--AAGTCCTGT--GGCGT-CAGGCGA--GCGAT-AAAATTGCAGGTGTGGA
gi|10 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCGGAGT-GAAA-TCCTGTAGGCGG-CTCCTT---GTGCAGTCC-TGGCAGGTTT-CCGGCAACTTCTGCATCTGGAC----TCA-TCTCTGTCCGTCTCGACTATGTCCTAC---C-ACTAG--ATCAAGATGAATTTCA-GAT-GA-GAGAGTGAGGTT-GGTGG--CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCAc
gi|11 : CGG-TTCATTTA-GCACACTC----GCAACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---C-ACTGG--ACC-CGGCGA--TTCAGGAC-GA-GAGAGTGAGGCT-GATTC--TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCA
gi|12 : CTGCATCTG--TCCCATCGATCTCTAGTCGTCTCGACTTAGTCCTAC---T-ATTGGGTAC--AGAT-AGCCTC-GGAC----GAGAGTGAGGTC-AACGC--TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTC----ATCTTATCAT-CCTT--CAAACCA-TCC------C----CCCAA--AAGCCCTGT--GGCGA-CAGGCGA--GCGAC-AAAGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : TCTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTTAT----TCAT-CCTT--CAAACCA-TCC------C----CCCAA--AAGTACTGT---GCGA-CAGGCGA--GCGACG-AAGCGACA-GTGTGGg
gi|15 : AAA-ATCAGAAGT-GGAA-CCCTTTAGGCAG-TTGGTT------TAGCTT-TGGGAAACCTACTGGCAACTCCTGCAg
gi|16 : CGG-TTGATTTA-GCACACTC----GCAACCTT-CCGGCAACTCCTGCACCCgc
gi|2 : GAGTAAAACC-TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGG-TTCCTT---GTGCAGTTTATGCCAGGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAG--ATCAAGATGAATTTCA-GACAAA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA-T-ATTTCATCACATATT--CA----A-CCA------C----TATCA--AA-TCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATAt
gi|3 : GAGTAAA-CC-TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGG-TTCCTT---GTGCAGTTA-TGCCAGGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAG--ATCAAGATGAATTTCA-GAC-AA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA-T-ATTTCATCACATATT--CA----A-CCA------C----TATCA--AAGTCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC-CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGA-TTGATT---TAGCAAAC--TCACAACCTT-CCGGAAACTCCTGCATCCTGCT----TCG-TCTCCATCCGTCTTGATTCTGTCTTGT---C-ATTGG--ACCCAG-CGA--TTCAGGAC-GA-TAGAGTGAGGCT-GATTC--TGAGCAAGTCTCCCT-CACT-A-T-GA---------------GCAAGTCA-TGA---CATCAC-CATC--CA----G-TCATT----C----CACC---AAGCCCTGT--GGCGATCGGG-AA--GCGGCG-AAGCAGAAGGTGAGGATA
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGG-CTCTTT---GTGCAGTCC-TGGTAAGGTT-CCAGCAACATCTGCATCTGGAT----TCA-TCTCTAGCTGTCTCGACTATGTCCTGC---C-ACTAG--ATCAGAATGAATTTCA-GAC----GAGAGTTAGGTT-GGTGG--TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA-T-ATTTCATCAC----G--CA----C-TCA------C----TATCATCAAGTCCTGC--GGCGA-CTGGCAA--TCGACGAAAACAGCAGATGCGGATA
gi|6 : aAGTAAA-CCCTTTT--AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGG-TTGATTTA-GCACA--CT-TG-CAAACAT-CAGACAGCTCCCGCATCCTGGT----TTG-TCTTCAGCCGTCTCG-----------C---C-ACTGG--ACCCGG-TGAAT--CAGGAT-GG-GAGTGCGAGCCT-GATTT--TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-C--ACGCAAGTCA-TGA---CATCAC-CATT--CA----ATTCAGTAATCT----TATC---AAGCCCTGT--GGCGA-TGAGGAA--GCGAC
gi|7 : TAGGCGGCTTGATTAGAGCACACTCA--GAC---CTT-CCGACAGC-CCTGCATCCTGAT----T-G-TCTCCAGCCGTCTTGACTCTTT--TGCACTC-AC-----ACC----CGGCATTCAGGGG-GACGAGAATGA-GCT-GATTC--TGCGC-AGTCTCCCT-CAC--T-T-AATTCAAGTCAT---GCGCAA-TCA-CGACGTC--CAC-CATT--C-----G-TCATC----C----TACCA--AGTCCCTGTTAGGCGA-TAGA-GA--GCGGCCAGAGTAGTAG
gi|8 : CGG-TTCATTTA-GCACACTC----GCAACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---CAACTGG--ACC-CGGCGA--TTCAGGAG-AA-GAGTGTG-GGCT-GATTC--TGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCA-C--GCGCAAGTCA-TGA----ATC-C-CATT--CA----G-TCATC----C----TACCA--AA-CCCTGT--GGCGA-TGGG-GAAGGCG-CG-AAGC-ATAGGTGcgagga
gi|9 : GCAACCTT-CCGACAGCCCCTGCATCCTGAT----TCG-TCTCCAGCCGTCTTGACTCTGTCTTGC---C-ACTCA--ACC-CGGCGA--TTCAGGAC-GA-GAAAGTGAGGCT-GATTC--TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA-TGA---CGTCAC-CATT--CA----G-TCATC----C----TACC---AATCCCTGT--GGCGA-TAGAGAA--GCGGC-AAAGTAGTAGGCGAGGATAagat
Alignments
lowQualScore : 1 222222222 1 3333333333333333 11111111111 11111 1111 2222 11 111111 333333
lowQualScore : 0 111111111 6 9 5 22 3 44 2222222222222222 3 1 3 3 0 7777 3 2 3 555 3 3 99999999999 2 55 3 44444 3 1 2 3 3 3 0 2 7777 3 6666 3 4 00 55 777777 000000 7777 999 3 55 666 8 55 99 2
lowQualScore : . ......... . . . .. . .. ................ . . . . . .... . . . ... . . ........... . .. . ..... . . . . . . . . .... . .... . . .. .. ...... ...... .... ... . .. ... . .. .. .
lowQualScore : 0 000000000 0 0 7 44 6 77 5555555555555555 3 0 3 8 8 1111 3 2 7 888 3 3 11111111111 5 77 3 00000 7 5 9 1 1 1 8 1 2222 6 1111 6 4 77 00 777777 555555 7777 444 6 00 555 2 00 88 2
consensus : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGG-TTCATTTAGCGCACT-C-T--GGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGAC-C-N-G-GCGAATTTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
Reference ( family-13648 ) : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGG-TTCATT-AGCGCAGT-C-T--GGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGAC-C-A-G-ACGAATTTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
gi|1 : CTGCA-CCAACT----TCG-TTTCCAGCCGTATCGACCAAGTC-TGC---T-GCTG-AG-C-A-G-ATG--TTTTGGG-C-GA-GAGAGTGAGATCGAC-GAGATGTGCAACTCTTCCT-CACT-T-T-AAATCAAGT--TT--GCGTCAGTCA-T--CTTAT-C-C-TTTTAACA----A-TCC------CTTCTTCCCA--AAGTCCTGT--GGCGT-CAGGCGA--GCGATAAAATT-GCAGGTGTGGA
gi|10 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCGGAGT-GAAA-TCCTGTAGGCGG-CTCCTT--GTGCAGT-CCT--GGCA-GGTTT-CCGGCAACTTCTGCATCTGGAC----TCA-TCTCTGTCCGTCTCGACTATGTCCTAC---C-ACTAGAT-C-AAG-ATGAATTTCAG-AT-GA-GAGAGTGAGGTTGGT-GG--CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCAc
gi|11 : CGG-TTCATTTAGCACACT-C-----GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---C-ACTGGAC-C-C-G-GCGA--TTCAGGAC-GA-GAGAGTGAGGCTGAT-TC--TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCA
gi|12 : CTGCATCTG--TCCCATCGATCTCTAGTCGTCTCGACTTAGTCCTAC---T-ATTGGGTAC-A-G-AT-AGCCTC-GGAC----GAGAGTGAGGTCAAC-GC--TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTCA-T--CTTAT-CAT-CCTT--CAAACCA-TCC------CC----CCAA--AAGCCCTGT--GGCGA-CAGGCGA--GCGAC-AAAGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : TCTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTTATTCAT-C-C---TT--CAAACCA-TCC------CC----CCAA--AAGTACTGT---GCGA-CAGGCGA--GCGACG-AAGCGACA-GTGTGGg
gi|15 : AAA-ATCAGAAGT-GGAA-CCCTTTAGGCAG-TTGGTTTAGC----T-T-T--GGGA-AACCTACTGGCAACTCCTGCAg
gi|16 : CGG-TTGATTTAGCACACT-C-----GCA-ACCTT-CCGGCAACTCCTGCACCCgc
gi|2 : GAGTAAAACC---TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGG-TTCCTT--GTGCAGT-T-TATGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGAT-CAA-G-ATGAATTTCA-GACAAA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA-TATTTCAT-CACATATT--CA----A-CCA------CT----ATCA--AA-TCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATAt
gi|3 : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGG-TTCCTT--GTGCAGT-TAT--GCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGAT-CAA-G-ATGAATTTCA-GAC-AA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA-TATTTCAT-CACATATT--CA----A-CCA------CT----ATCA--AAGTCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC---CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGA-TTGATTTAGCAAACT-C-----ACA-ACCTT-CCGGAAACTCCTGCATCCTGCT----TCG-TCTCCATCCGTCTTGATTCTGTCTTGT---C-ATTGGAC-C-C-A-GCGA--TTCAGGAC-GA-TAGAGTGAGGCTGAT-TC--TGAGCAAGTCTCCCT-CACT-A-T-GA---------------GCAAGTCA-TGA--CAT-CAC-CATC--CA----G-TCATT----CC----ACC---AAGCCCTGT--GGCGATCGGG-AA--GCGGCG-AAGCAGAAGGTGAGGATA
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGG-CTC-TT-TGTGCAGTCC-T--GGTA-AGGTT-CCAGCAACATCTGCATCTGGAT----TCA-TCTCTAGCTGTCTCGACTATGTCCTGC---C-ACTAGAT-C-A-GAATGAATTTCA-GAC----GAGAGTTAGGTTGGT-GG--TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA-TATTTCAT-CAC----G--CA----C-TCA------CT----ATCATCAAGTCCTGC--GGCGA-CTGGCAA--TCGACGAAAACAGCAGATGCGGATA
gi|6 : aAGTAAA-CCCTTTT----AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGG-TTGATTTAGCACA---C-T--TGCA-AACAT-CAGACAGCTCCCGCATCCTGGT----TTG-TCTTCAGCCGTCTC-----------GC---C-ACTGGAC-C-C-G-GTGAA--TCAGGAT-GG-GAGTGCGAGCCTGAT-TT--TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-C--ACGCAAGTCA-TGA--CAT-CAC-CATT--CA----ATTCAGTAATCTT----ATC---AAGCCCTGT--GGCGA-TGAGGAA--GCGAC
gi|7 : TAGGCGGCTTGATT-AGAGCACA-C-T----CAGACCTT-CCGACAGC-CCTGCATCCTGAT----T-G-TCTCCAGCCGTCTTGACTCTTT--TGCACTC-AC---AC-C-C-G-GCA---TTCAGGGG-GACGAGAATGA-GCTGAT-TC--TGCGC-AGTCTCCCT-CAC--T-T-AATTCAAGTCAT---GCGCAA-TCA-CGA--CGTCCAC-CATT--C-----G-TCATC----CT----ACCA--AGTCCCTGTTAGGCGA-TAGA-GA--GCGGCCAGAGTAGTAG
gi|8 : CGG-TTCATTTAGCACACT-C-----GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---CAACTGGAC-C-C-G-GCGA--TTCAGGAG-AA-GAGTGTG-GGCTGAT-TC--TGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCA-C--GCGCAAGTCA-TGA---AT-C-C-CATT--CA----G-TCATC----CT----ACCA--AA-CCCTGT--GGCGA-TGGG-GAAGGCG-CG-AAGCA-TAGGTGcgagga
gi|9 : -C-T--TGCA-ACCTT-CCGACAGCCCCTGCATCCTGAT----TCG-TCTCCAGCCGTCTTGACTCTGTCTTGC---C-ACTCAAC-C-C-G-GCGA--TTCAGGAC-GA-GAAAGTGAGGCTGAT-TC--TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA-TGA--CGT-CAC-CATT--CA----G-TCATC----CT----ACC---AATCCCTGT--GGCGA-TAGAGAA--GCGGC-AAAGTAGTAGGCGAGGATAagat
Alignments
lowQualScore : 1 222222222 1 222 11 11 11111 1111 2222 11 1111 333333
lowQualScore : 0 111111111 6 9 5 22 55 66 1 44 888 3 1 3 3 0 7777 3 2 3 555 3 11 3 0 44 6 3 3 44444 3 1 2 3 3 3 0 2 7777 3 6666 3 4 00 55 5555 3 000000 7777 55 3 55 666 8 55 99 2
lowQualScore : . ......... . . . .. .. .. . .. ... . . . . . .... . . . ... . .. . . .. . . . ..... . . . . . . . . .... . .... . . .. .. .... . ...... .... .. . .. ... . .. .. .
lowQualScore : 0 000000000 0 0 7 44 33 44 8 66 111 3 0 3 8 8 1111 3 2 7 888 3 00 3 1 88 7 3 3 00000 7 5 9 1 1 1 8 1 2222 6 1111 6 4 77 00 5555 6 555555 7777 00 6 00 555 2 00 88 2
consensus : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAATTTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----AT-CA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
Reference ( family-13648 ) : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCATTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-NG-GCGAATTTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----AT-CA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
gi|1 : CTGCA-CCAACT----TCG-TTTCCAGCCGTATCGACCAAGTC-TGC---T-GCTG-AGC-AG-ATG--TTTTGGG-C-GA-GAGAGTGAGATCGAC-GAGATGTGCAACTCTTCCT-CACT-T-T-AAATCAAGT--TT--GCGTCAGTCA-T--CTTAT-C-C-TTTTAACA----AT-CC------CTTCTTCCCA--AAGTCCTGT--GGCGT-CAGGCGA--GCGATAAAATT-GCAGGTGTGGA
gi|10 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCGGAGT-GAAA-TCCTGTAGGCGGCTCCTT--GTGCA--GTCCTGGCA-GGTTT-CCGGCAACTTCTGCATCTGGAC----TCA-TCTCTGTCCGTCTCGACTATGTCCTAC---C-ACTAGATCAAG-ATGAATTTCA-GAT-GA-GAGAGTGAGGTTGGT-GG--CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCAc
gi|11 : CGGTTCATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---C-ACTGGACC-CG-GCGA--TTCAGGAC-GA-GAGAGTGAGGCTGAT-TC--TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCA
gi|12 : CTGCATCTG--TCCCATCGATCTCTAGTCGTCTCGACTTAGTCCTAC---T-ATTGGGTA-CA-GATAGCCTC-GGAC-GA-GAG--TGAGGTCAAC-GC--TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTCA-T--CTTAT-CAT-CCTT--CAAACCAT-CC------CC----CCAA--AAGCCCTGT--GGCGA-CAGGCGA--GCGAC-AAAGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : TCTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTTATTCAT-C-C---TT--CAAACCAT-CC------CC----CCAA--AAGTACTGT---GCGA-CAGGCGA--GCGACG-AAGCGACA-GTGTGGg
gi|15 : AAA-ATCAGAAGT-GGAA-CCCTTTAGGCAGTTGGTTTAGC------TT-TGGGA-AACCTACTGGCAACTCCTGCAg
gi|16 : CGGTTGATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCACCCgc
gi|2 : GAGTAAAACC---TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGGTTCCTT--GTGCAGTTTA-TGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAATTTCA-GACAAA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA-TATTTCAT-CACATATT--CA----AC-CA------CT----ATCA--AA-TCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATAt
gi|3 : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCCTT--GTGCA--GTTATGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAATTTCA-GAC-AA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA-TATTTCAT-CACATATT--CA----AC-CA------CT----ATCA--AAGTCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC---CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGATTGATTTAGCAAA--CTC---ACA-ACCTT-CCGGAAACTCCTGCATCCTGCT----TCG-TCTCCATCCGTCTTGATTCTGTCTTGT---C-ATTGGACC-CA-GCGA--TTCAGGAC-GA-TAGAGTGAGGCTGAT-TC--TGAGCAAGTCTCCCT-CACT-A-T-GA---------------GCAAGTCA-TGA--CAT-CAC-CATC--CA----GT-CATT----CC----ACC---AAGCCCTGT--GGCGATCGGG-AA--GCGGCG-AAGCAGAAGGTGAGGATA
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGGCTC-TTT-GTGCA--GTCCTGGTA-AGGTT-CCAGCAACATCTGCATCTGGAT----TCA-TCTCTAGCTGTCTCGACTATGTCCTGC---C-ACTAGATC-AGAATGAATTTCA-GAC----GAGAGTTAGGTTGGT-GG--TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA-TATTTCAT-CAC----G--CA----CT-CA------CT----ATCATCAAGTCCTGC--GGCGA-CTGGCAA--TCGACGAAAACAGCAGATGCGGATA
gi|6 : aAGTAAA-CCCTTTT----AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGGTTGATTTAGCACA--CTT---GCA-AACAT-CAGACAGCTCCCGCATCCTGGT----TTG-TCTTCAGCCGTCTCG-----------C---C-ACTGGACC-CG-GTGAAT--CAGGAT-GG-GAGTGCGAGCCTGAT-TT--TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-C--ACGCAAGTCA-TGA--CAT-CAC-CATT--CA----ATTCAGTAATCTT----ATCA--A-GCCCTGT--GGCGA-TGAGGAA--GCGAC
gi|7 : TAGGCGGCTTGATTAGAGCA--CAC-T--CAGACCTT-CCGACAGC-CCTGCATCCTGAT----T-G-TCTCCAGCCGTCTTGACTCTTT--TGCACTC-AC---ACC-CG-GCA---TTCAGGGG-GACGAGAATGA-GCTGAT-TC--TGCGC-AGTCTCCCT-CAC--T-T-AATTCAAGTCAT---GCGCAA-TCA-CGA--CGTCCAC-CATT--C-----GT-CATC----CT----ACCA--AGTCCCTGTTAGGCGA-TAGA-GA--GCGGCCAGAGTAGTAG
gi|8 : CGGTTCATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---CAACTGGACC-CG-GCGA--TTCAGGAG-AA-GAGTGTG-GGCTGAT-TC--TGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCA-C--GCGCAAGTCA-TGA---AT-C-C-CATT--CA----GT-CATC----CT----ACCA--AA-CCCTGT--GGCGA-TGGG-GAAGGCG-CG-AAGCA-TAGGTGcgagga
gi|9 : A--CAC-TTGCA-ACCTT-CCGACAGCCCCTGCATCCTGAT----TCG-TCTCCAGCCGTCTTGACTCTGTCTTGC---C-ACTCAACC-CG-GCGA--TTCAGGAC-GA-GAAAGTGAGGCTGAT-TC--TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA-TGA--CGT-CAC-CATT--CA----GT-CATC----CT----ACC---AATCCCTGT--GGCGA-TAGAGAA--GCGGC-AAAGTAGTAGGCGAGGATAagat
Alignments
lowQualScore : 1 222222222 1 222 11 222 11111 1111 2222 11 111111 333333
lowQualScore : 0 111111111 6 9 5 22 99 66 2 44 888 3 1 3 3 0 7777 3 2 3 555 3 00 3 000 6 55 3 44444 3 1 2 3 3 3 0 2 7777 3 6666 3 4 00 55 777777 000000 7777 999 3 55 666 8 55 99 2
lowQualScore : . ......... . . . .. .. .. . .. ... . . . . . .... . . . ... . .. . ... . .. . ..... . . . . . . . . .... . .... . . .. .. ...... ...... .... ... . .. ... . .. .. .
lowQualScore : 0 000000000 0 0 7 44 22 44 6 66 111 3 0 3 8 8 1111 3 2 7 888 3 44 3 333 7 77 3 00000 7 5 9 1 1 1 8 1 2222 6 1111 6 4 77 00 777777 555555 7777 444 6 00 555 2 00 88 2
consensus : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAAT-TTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
Reference ( family-13648 ) : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAAT-TTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
gi|1 : CTGCA-CCAACT----TCG-TTTCCAGCCGTATCGACCAAGTC-TGC---T-GCTGA-------GCAGATGTTTTGGGC-GA-GAGAGTGAGATCGAC-GAGATGTGCAACTCTTCCT-CACT-T-T-AAATCAAGT--TT--GCGTCAGTCA-T--CTTAT-C-C-TTTTAACA----A-TCC------CTTCTTCCCA--AAGTCCTGT--GGCGT-CAGGCGA--GCGATAAAATT-GCAGGTGTGGA
gi|10 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCGGAGT-GAAA-TCCTGTAGGCGGCTCCTT--GTGCA--GTCCTGGCA-GGTTT-CCGGCAACTTCTGCATCTGGAC----TCA-TCTCTGTCCGTCTCGACTATGTCCTAC---C-ACTAGATCAAG-ATGAAT-TTCA-GAT-GA-GAGAGTGAGGTTGGT-GG--CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCAc
gi|11 : CGGTTCATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---C-ACTGGACC-CG-GCGA---TTCAGGAC-GA-GAGAGTGAGGCTGAT-TC--TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCA
gi|12 : CTGCATCTG--TCCCATCGATCTCTAGTCGTCTCGACTTAGTCCTAC---T-ATTGGGTA-CA-GATAGC-CTC-GGAC----GAGAGTGAGGTCAAC-GC--TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTCA-T--CTTAT-CAT-CCTT--CAAACCA-TCC------CC----CCAA--AAGCCCTGT--GGCGA-CAGGCGA--GCGAC-AAAGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : TCTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTTATTCAT-C-C---TT--CAAACCA-TCC------CC----CCAA--AAGTACTGT---GCGA-CAGGCGA--GCGACG-AAGCGACA-GTGTGGg
gi|15 : AAA-ATCAGAAGT-GGAA-CCCTTTAGGCAGTTGGTTTAG------CTT-TGGGA-AACCTACTGGCAACTCCTGCAg
gi|16 : CGGTTGATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCACCCgc
gi|2 : GAGTAAAACC---TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGGTTCCTT--GTGCAGTTTA-TGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAAT-TTCA-GACAAA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA-TATTTCAT-CACATATT--CA----A-CCA------CT----ATCA--AA-TCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATAt
gi|3 : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCCTT--GTGCA--GTTATGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAAT-TTCA-GAC-AA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA-TATTTCAT-CACATATT--CA----A-CCA------CT----ATCA--AAGTCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC---CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGATTGATTTAGCAAA--CTC---ACA-ACCTT-CCGGAAACTCCTGCATCCTGCT----TCG-TCTCCATCCGTCTTGATTCTGTCTTGT---C-ATTGGACC-CA-GCGA---TTCAGGAC-GA-TAGAGTGAGGCTGAT-TC--TGAGCAAGTCTCCCT-CACT-A-T-GA---------------GCAAGTCA-TGA--CAT-CAC-CATC--CA----G-TCATT----CC----ACC---AAGCCCTGT--GGCGATCGGG-AA--GCGGCG-AAGCAGAAGGTGAGGATA
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGGCTC-TTT-GTGCA--GTCCTGGTA-AGGTT-CCAGCAACATCTGCATCTGGAT----TCA-TCTCTAGCTGTCTCGACTATGTCCTGC---C-ACTAGATC-AGAATGAAT-TTCA-GAC----GAGAGTTAGGTTGGT-GG--TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA-TATTTCAT-CAC----G--CA----C-TCA------CT----ATCATCAAGTCCTGC--GGCGA-CTGGCAA--TCGACGAAAACAGCAGATGCGGATA
gi|6 : aAGTAAA-CCCTTTT----AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGGTTGATTTAGCACA--CTT---GCA-AACAT-CAGACAGCTCCCGCATCCTGGT----TTG-TCTTCAGCCGTCTCG-----------C---C-ACTGGACC-CG-GTGAA---TCAGGAT-GG-GAGTGCGAGCCTGAT-TT--TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-C--ACGCAAGTCA-TGA--CAT-CAC-CATT--CA----ATTCAGTAATCTT----ATC---AAGCCCTGT--GGCGA-TGAGGAA--GCGAC
gi|7 : TAGGCGGCTTGATTAGAGCA--CAC-T--CAGACCTT-CCGACAGC-CCTGCATCCTGAT----T-G-TCTCCAGCCGTCTTGACTCTTT--TGCACTC-AC---ACC-CG-GCA----TTCAGGGG-GACGAGAATGA-GCTGAT-TC--TGCGC-AGTCTCCCT-CAC--T-T-AATTCAAGTCAT---GCGCAA-TCA-CGA--CGTCCAC-CATT--C-----G-TCATC----CT----ACCA--AGTCCCTGTTAGGCGA-TAGA-GA--GCGGCCAGAGTAGTAG
gi|8 : CGGTTCATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---CAACTGGACC-CG-GCGA---TTCAGGAG-AA-GAGTGTG-GGCTGAT-TC--TGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCA-C--GCGCAAGTCA-TGA---AT-C-C-CATT--CA----G-TCATC----CT----ACCA--AA-CCCTGT--GGCGA-TGGG-GAAGGCG-CG-AAGCA-TAGGTGcgagga
gi|9 : A--CAC-TTGCA-ACCTT-CCGACAGCCCCTGCATCCTGAT----TCG-TCTCCAGCCGTCTTGACTCTGTCTTGC---C-ACTCAACC-CG-GCGA---TTCAGGAC-GA-GAAAGTGAGGCTGAT-TC--TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA-TGA--CGT-CAC-CATT--CA----G-TCATC----CT----ACC---AATCCCTGT--GGCGA-TAGAGAA--GCGGC-AAAGTAGTAGGCGAGGATAagat
Alignments
lowQualScore : 1 222222222 1 222 11 222 11111 1111 2222 11 111111 333333
lowQualScore : 0 111111111 6 9 5 22 99 66 2 44 888 3 1 3 3 0 7777 3 2 3 555 3 00 3 000 6 55 3 44444 3 1 2 3 3 3 0 2 7777 3 6666 3 4 00 55 777777 000000 7777 999 3 55 666 8 55 99 2
lowQualScore : . ......... . . . .. .. .. . .. ... . . . . . .... . . . ... . .. . ... . .. . ..... . . . . . . . . .... . .... . . .. .. ...... ...... .... ... . .. ... . .. .. .
lowQualScore : 0 000000000 0 0 7 44 22 44 6 66 111 3 0 3 8 8 1111 3 2 7 888 3 44 3 333 7 77 3 00000 7 5 9 1 1 1 8 1 2222 6 1111 6 4 77 00 777777 555555 7777 444 6 00 555 2 00 88 2
consensus : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAAT-TTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
Reference ( family-13648 ) : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAAT-TTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
gi|1 : CTGCA-CCAACT----TCG-TTTCCAGCCGTATCGACCAAGTC-TGC---T-GCTGA-------GCAGATGTTTTGGGC-GA-GAGAGTGAGATCGAC-GAGATGTGCAACTCTTCCT-CACT-T-T-AAATCAAGT--TT--GCGTCAGTCA-T--CTTAT-C-C-TTTTAACA----A-TCC------CTTCTTCCCA--AAGTCCTGT--GGCGT-CAGGCGA--GCGATAAAATT-GCAGGTGTGGA
gi|10 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCGGAGT-GAAA-TCCTGTAGGCGGCTCCTT--GTGCA--GTCCTGGCA-GGTTT-CCGGCAACTTCTGCATCTGGAC----TCA-TCTCTGTCCGTCTCGACTATGTCCTAC---C-ACTAGATCAAG-ATGAAT-TTCA-GAT-GA-GAGAGTGAGGTTGGT-GG--CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCAc
gi|11 : CGGTTCATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---C-ACTGGACC-CG-GCGA---TTCAGGAC-GA-GAGAGTGAGGCTGAT-TC--TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCA
gi|12 : CTGCATCTG--TCCCATCGATCTCTAGTCGTCTCGACTTAGTCCTAC---T-ATTGGGTA-CA-GATAGC-CTC-GGAC----GAGAGTGAGGTCAAC-GC--TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTCA-T--CTTAT-CAT-CCTT--CAAACCA-TCC------CC----CCAA--AAGCCCTGT--GGCGA-CAGGCGA--GCGAC-AAAGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : TCTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTTATTCAT-C-C---TT--CAAACCA-TCC------CC----CCAA--AAGTACTGT---GCGA-CAGGCGA--GCGACG-AAGCGACA-GTGTGGg
gi|15 : AAA-ATCAGAAGT-GGAA-CCCTTTAGGCAGTTGGTTTAG------CTT-TGGGA-AACCTACTGGCAACTCCTGCAg
gi|16 : CGGTTGATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCACCCgc
gi|2 : GAGTAAAACC---TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGGTTCCTT--GTGCAGTTTA-TGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAAT-TTCA-GACAAA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA-TATTTCAT-CACATATT--CA----A-CCA------CT----ATCA--AA-TCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATAt
gi|3 : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCCTT--GTGCA--GTTATGCCA-GGGTT-CCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAAT-TTCA-GAC-AA-GAGAGTGAGGTTGGGAGG--TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA-TATTTCAT-CACATATT--CA----A-CCA------CT----ATCA--AAGTCCTGC--GGCGA-TTGGCAA--TCGACGAAAACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC---CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGATTGATTTAGCAAA--CTC---ACA-ACCTT-CCGGAAACTCCTGCATCCTGCT----TCG-TCTCCATCCGTCTTGATTCTGTCTTGT---C-ATTGGACC-CA-GCGA---TTCAGGAC-GA-TAGAGTGAGGCTGAT-TC--TGAGCAAGTCTCCCT-CACT-A-T-GA---------------GCAAGTCA-TGA--CAT-CAC-CATC--CA----G-TCATT----CC----ACC---AAGCCCTGT--GGCGATCGGG-AA--GCGGCG-AAGCAGAAGGTGAGGATA
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGGCTC-TTT-GTGCA--GTCCTGGTA-AGGTT-CCAGCAACATCTGCATCTGGAT----TCA-TCTCTAGCTGTCTCGACTATGTCCTGC---C-ACTAGATC-AGAATGAAT-TTCA-GAC----GAGAGTTAGGTTGGT-GG--TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA-TATTTCAT-CAC----G--CA----C-TCA------CT----ATCATCAAGTCCTGC--GGCGA-CTGGCAA--TCGACGAAAACAGCAGATGCGGATA
gi|6 : aAGTAAA-CCCTTTT----AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGGTTGATTTAGCACA--CTT---GCA-AACAT-CAGACAGCTCCCGCATCCTGGT----TTG-TCTTCAGCCGTCTCG-----------C---C-ACTGGACC-CG-GTGAA---TCAGGAT-GG-GAGTGCGAGCCTGAT-TT--TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-C--ACGCAAGTCA-TGA--CAT-CAC-CATT--CA----ATTCAGTAATCTT----ATC---AAGCCCTGT--GGCGA-TGAGGAA--GCGAC
gi|7 : TAGGCGGCTTGATTAGAGCA--CAC-T--CAGACCTT-CCGACAGC-CCTGCATCCTGAT----T-G-TCTCCAGCCGTCTTGACTCTTT--TGCACTC-AC---ACC-CG-GCA----TTCAGGGG-GACGAGAATGA-GCTGAT-TC--TGCGC-AGTCTCCCT-CAC--T-T-AATTCAAGTCAT---GCGCAA-TCA-CGA--CGTCCAC-CATT--C-----G-TCATC----CT----ACCA--AGTCCCTGTTAGGCGA-TAGA-GA--GCGGCCAGAGTAGTAG
gi|8 : CGGTTCATTTAGCACA--CTC---GCA-ACCTT-CCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---CAACTGGACC-CG-GCGA---TTCAGGAG-AA-GAGTGTG-GGCTGAT-TC--TGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCA-C--GCGCAAGTCA-TGA---AT-C-C-CATT--CA----G-TCATC----CT----ACCA--AA-CCCTGT--GGCGA-TGGG-GAAGGCG-CG-AAGCA-TAGGTGcgagga
gi|9 : A--CAC-TTGCA-ACCTT-CCGACAGCCCCTGCATCCTGAT----TCG-TCTCCAGCCGTCTTGACTCTGTCTTGC---C-ACTCAACC-CG-GCGA---TTCAGGAC-GA-GAAAGTGAGGCTGAT-TC--TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA-TGA--CGT-CAC-CATT--CA----G-TCATC----CT----ACC---AATCCCTGT--GGCGA-TAGAGAA--GCGGC-AAAGTAGTAGGCGAGGATAagat
blockSeqs : . TCGAGG T T G TT CA TA C GT ATG G C A G CCCA A A C ACT A AA A AT G AA C AGG G C A A A T A TCAG C TATT C A AT . AACCA GTAATC . ATC G TA TCG C AG GA T
blockSeqs : . CTTTT T T . CG GG TA C . CTG . A . T . . C T . . AA . GC G G . AGG A G . . . . C TCA . ATTT . A AT . AACCA TT . A G . CA C . GA T
blockSeqs : . CTGA A T . CG GA TA T . TG . C . G . . T C . . AA . AT G G . GG A C . . . . T TCA . ATTT . A C . AT TC . A G . CA C . GA C
blockSeqs : T . . AT CC TA T . TG . G . G . . A C . . C . AT G A . TC A C . . . . T TC . ATTT . A C . A TC . A G . TT C . CA C
blockSeqs : . . CG CC TA C . TT . G . G . . A C . . C . AT G G . GC G C . . . . A TC . CT . A C . A TC . A G . TT C . A A
blockSeqs : . . GT GA TA T . T . C . T . . C T . . C . A G G . TC G C . . . . A C . GA . A C . G . . A G . CT G . G C
blockSeqs : GA TA C . . . G . G . . A C . . A . . G G . GG A G . . . . A T . GA . A C . C . . A T . TG G . G A
blockSeqs : TG T A . . . A . T . . C T . . C . . . A . TT G C . . . . C C . GA . A C . G . . . T . TA . . G
blockSeqs : CA . C . . . C . T . . C T . . C . . . G . TC A G . . . . C T . GA . . . . G . . . . . TG . . A
blockSeqs : C . . . . . C . T . . C . . . C . . . . . TC A G . . . . C . . GA . . . . G . . . . . TA . .
blockSeqs : . . . C . T . . . . . . C . . . . . TC A G . . . . C
blockSeqs : . G . . . . .
blockSeqs : .
blockSeqCons : TA T** C* A** TC*** TC** ** **** G*
originalCons : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTC-TGGCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAAT-TTCAGGAC-GA-GAGAGTGAGGCTGAT-NC--TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACGAAAGCAGCAGGTGCGGATA
finalCons : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA--CTCT--GCA-ANCTT-CCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACCC-G-GCGAA--TTCAGGAC-GA-GAGAGTGAGGCTGATTC---TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CA----A-TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACG-AAGCAGCAGGTGCGGATA
Alignments
lowQualScore : 1 222222222 1 22222222 11 1 11111111 1111 2222 3333333333333 1
lowQualScore : 0 111111111 6 9 5 22 99 66 1 3 88888888 44 3 1 3 0 7777 3 2 3 555 3 00 3 0 3 3 55 3 66666666 3 1 2 3 3 3 0 2 7777 3 6666 3 4 888 55 0000000000000 7777 999 3 55 666 8 55 2 4 2
lowQualScore : . ......... . . . .. .. .. . . ........ .. . . . . .... . . . ... . .. . . . . .. . ........ . . . . . . . . .... . .... . . ... .. ............. .... ... . .. ... . .. . . .
lowQualScore : 0 000000000 0 0 7 44 22 44 8 3 11111111 66 3 0 8 8 1111 3 2 7 888 3 44 3 1 4 2 77 3 88888888 7 5 9 1 1 1 8 1 2222 6 1111 6 4 444 00 8888888888888 7777 444 6 00 555 2 00 0 0 2
consensus : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA-CTCT--G---C--A-ACCTTCCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAATTCCGGAC-GA-GAGAGTGAGGCTGAT-TC----TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CAA----TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACG-A-AGCAGCAGGTGCGGATA
Reference ( family-13648 ) : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCGTTTAGCGCA-CTCT--G---C--A-ANCTTCCGGCAACTCCTGCATCCGGAT----TCG-TCTCCAGCCGTCTCGACTNTGTCCTGC---C-ACTGGACC-CG-GCGAATTCAGGAC-GA-GAGAGTGAGGCTGAT-TC----TGCGCGACTCTTCCT-CACT-T-T-AATCCAAGTCATC--GCGCAAGTCA-TGATTCAT-CAC-CATT--CAA----TCA------CT----ACCA--AAGCCCTGT--GGCGA-CGGGCGA--GCGACG-A-AGCAGCAGGTGCGGATA
gi|1 : CTGCA-CCAACT----TCG-TTTCCAGCCGTATCGACCAAGTC-TGC---T-GCTG-AGC-AG-ATG--TTTTGGGC-GA-GAGAGTGAGATCGA---CGAGATGTGCAACTCTTCCT-CACT-T-T-AAATCAAGT--TT--GCGTCAGTCA-T--CTTAT-C-C-TTTTAACAA----TCC------CTTCTTCCCA--AAGTCCTGT--GGCGT-CAGGCGA--GCGATA-A-AATTGCAGGTGTGGA
gi|10 : gactgcagagacaacactggttcagcgggcagaacaggcgattcccagcaacgcgtcgtggagcgcagagagcgtgttgagactagtatgaagccacgtcatccaCGGAGT-GAAA-TCCTGTAGGCGGCTCCTT--GTGCA-GTCCTGG---C--A-GGTTTCCGGCAACTTCTGCATCTGGAC----TCA-TCTCTGTCCGTCTCGACTATGTCCTAC---C-ACTAGATCAAG-ATGAATTTCAGAT-GA-GAGAGTGAGGTTGGT-GG----CGCACGACCCTTCTT-CACT-T-A-AATCAAAGTCAc
gi|11 : CGGTTCATTTAGCACA-CTC---G---C--A-ACCTTCCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---C-ACTGGACC-CG-GCG-ATTCAGGAC-GA-GAGAGTGAGGCTGAT-TC----TGCTCAAGTCTCCCT-CACT-A-T-AATCCAAGTCA
gi|12 : CTGCATCTG--TCCCATCGATCTCTAGTCGTCTCGACTTAGTCCTAC---T-ATTGGGTA-CA-GATAGCCTCGGAC----GAGAGTGAGGTCAAC-GC----TTCGCAACTCTTCCT-TAc
gi|13 : taCGCAACTCTTCCT-TACT-T-T-AAACTAAGTCATC--GCGCAAGTCA-T--CTTAT-CAT-CCTT--CAAACCATCC------CC----CCAA--AAGCCCTGT--GGCGA-CAGGCGA--GCGACA-A-AGCGACAGGTGTGGgcgcatttcttcacttattcatc
gi|14 : TCTTCCT-CACT-T-TTAAACTAAGTCATC--GCGCAAGTCACTTATTCAT-C---C-TT--CAAACCATCC------CC----CCAA--AAGTACTGT--G-CGA-CAGGCGA--GCGACG-A-AGCGACA-GTGTGGg
gi|15 : AAA-ATCAGAAGT-GGAA-CCCTTTAGGCAGTTGGTTTAGC-----TTT--G---GGAA-ACCTACTGGCAACTCCTGCAg
gi|16 : CGGTTGATTTAGCACA-CTC---G---C--A-ACCTTCCGGCAACTCCTGCACCCgc
gi|2 : GAGTAAAACC---TCGAGGAAAAATATCCGGAGTTGGAGGTCCCGTAGGCGGTTCCTT--GTGCA-GTTT--ATGCC--A-GGGTTCCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAATTTCAGACAAA-GAGAGTGAGGTTGGGAGG----TGCGCGACCCTTCTTACACT-T-T-AGTCAAATTCATCAGGCGCAAGTCA-TATTTCAT-CACATATT--CAA----CCA------CT----ATCA--AA-TCCTGC--GGCGA-TTGGCAA--TCGACGAA-AACAGCAGGTGCGGATAt
gi|3 : GAGTAAA-CC---TCGAGGAAAAATATCCGGAGTTGGAG-TCCCGTAGGCGGTTCCTT--GTGCAGTTAT--GC--C--A-GGGTTCCGGCAACTTCTGCATCTGAAC----TCA-TCTCTAGCCGTCTCGACTATGTCCTGC---C-ACTAGATCAAG-ATGAATTTCAGAC-AA-GAGAGTGAGGTTGGGAGG----TGCGCGACCCTTCTT-CACT-T-T-AGTCAAATTCATCA-GCGCAAGTCA-TATTTCAT-CACATATT--CAA----CCA------CT----ATCA--AAGTCCTGC--GGCGA-TTGGCAA--TCGACGAA-AACAGCAGGTGCGGATA
gi|4 : GAGTAAA-CC---CTGA--AAGAAAATCCGAAGT-GGGG-TCCATTAGGCGATTGATTTAGCAAA-CTC---A---C--A-ACCTTCCGGAAACTCCTGCATCCTGCT----TCG-TCTCCATCCGTCTTGATTCTGTCTTGT---C-ATTGGACC-CA-GCG-ATTCAGGAC-GA-TAGAGTGAGGCTGAT-TC----TGAGCAAGTCTCCCT-CACT-A-T-GA---------------GCAAGTCA-TGA--CAT-CAC-CATC--CAG----TCATT----CC----ACC---AAGCCCTGT--GGCGATCGGG-AA--GCGGCG-A-AGCAGAAGGTGAGGATA
gi|5 : ACCCGGAGT-GAAG-TCCCGTAGGCGGCTC-TTT-GTGCA-GTCCTGG---T--A-AGGTTCCAGCAACATCTGCATCTGGAT----TCA-TCTCTAGCTGTCTCGACTATGTCCTGC---C-ACTAGATC-AGAATGAATTTCAGAC----GAGAGTTAGGTTGGT-GG----TGCGCGACCTTTCTT-CACT-T-T-AATCAAAGTTATCA-GCGCAAGCTA-TATTTCAT-CAC----G--CAC----TCA------CT----ATCATCAAGTCCTGC--GGCGA-CTGGCAA--TCGACGAA-AACAGCAGATGCGGATA
gi|6 : aAGTAAA-CCCTTTT----AAAAAT-TCCGGA-TTGGGG-TCTGTTAGGCGGTTGATTTAGCACA-CT-T--G---C--A-AACATCAGACAGCTCCCGCATCCTGGT----TTG-TCTTCAGCCGTCTCG-----------C---C-ACTGGACC-CG-GTGAA-TCAGGAT-GG-GAGTGCGAGCCTGAT-TT----TGCGCAAGTCTCCCT-TA-----T-AATCCAAGTTA-C--ACGCAAGTCA-TGA--CAT-CAC-CATT--CAAT---TCAGTAATCTT----ATC---AAGCCCTGT--GGCGA-TGAGGAA--GCGAC
gi|7 : TAGGCGGCTTGATTAGAGCA-CACT------C--AGACCTTCCGACAGC-CCTGCATCCTGAT----T-G-TCTCCAGCCGTCTTGACTCTTT--TGCACTC-AC---ACC-CG-GC--ATTCAGGGG-GACGAGAATGA-GCTGAT-TC----TGCGC-AGTCTCCCT-CAC--T-T-AATTCAAGTCAT---GCGCAA-TCA-CGA--CGTCCAC-CATT--C-G----TCATC----CT----ACCA--AGTCCCTGTTAGGCGA-TAGA-GA--GCGGCC-AGAGTAGTAG
gi|8 : CGGTTCATTTAGCACA-CTC---G---C--A-ACCTTCCGGCAACTCCTGCATCCTGGT----TCG-TCGCCAGCCGTCTTGACTCTGTCTTGC---CAACTGGACC-CG-GCG-ATTCAGGAG-AA-GAGTGTG-GGCTGAT-TC----TGCTCAAGTC-TCCT-CACTATAT-ACTCCAAGTCA-C--GCGCAAGTCA-TGA---AT-C-C-CATT--CAG----TCATC----CT----ACCA--AA-CCCTGT--GGCGA-TGGG-GAAGGCG-CG-A-AGCA-TAGGTGcgagga
gi|9 : CA-CT-T--G---C--A-ACCTTCCGACAGCCCCTGCATCCTGAT----TCG-TCTCCAGCCGTCTTGACTCTGTCTTGC---C-ACTCAACC-CG-GCG-ATTCAGGAC-GA-GAAAGTGAGGCTGAT-TC----TGCGCAAGTCTCCCT-CACT-T-T-AATTCAAGTCAT---GCGCAAGTCA-TGA--CGT-CAC-CATT--CAG----TCATC----CT----ACC---AATCCCTGT--GGCGA-TAGAGAA--GCGGCA-A-AGTAGTAGGCGAGGATAagat