lowQualScore : 111 3333333333 11111 1
lowQualScore : 1 111 99 6 0000000000 6 77777 8 8 0 4 3 99999 0
lowQualScore : . ... .. . .......... . ..... . . . . . ..... .
lowQualScore : 7 777 22 7 0000000000 7 55555 0 0 6 1 6 11111 7
consensus : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATGTTTGTCGGTGACT-TATGGCACG-----CGTCTGTATAT
Reference ( gi|3 ) : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCACG-----TGTATGTATAT
gi|4 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA----------TT-TTACC-----ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCACG-----TGT-TGTATAT
gi|1 : CGACAAGCTAAAAATAAAACAAGGATCATCGAAGT---TTATTTA--TATAACCC-TTAA-TAAGGTTGTTTATTACC-A---GTATTAATTTTTATTC-GC-CGCCATTTTGGATTTTTGCCGGTGACT-TATGGCACG-----TGTCTGTATc
gi|6 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCACG-----TGTATGTATAT
gi|5 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCACG-----TGTATGTATAT
gi|2 : GACAAGCTAAAAATAAAACAAGCATCATC-GAGT---TTATTTA--TATAACCC-TTGT-T--------TA-TTACCAA---ATCTTTATTTTTATTCGGCGCGCCATTTTGGATTTTTACCGGTGACTATATGGCACGGCATCTGTATATATA
gi|8 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGTATGTGATTTGATAATAACTCGTTGACT--------TT-TTATC-AAATATATTTA-CTTTATT
gi|7 : ATGTTTGCCGGTGACT-TATGGCACA-----CGTCTGTATATataattcag
gi|16 : cATGTTTGTTGGTGACT-TATGGCACA-----CGTCTGTAacagtactggtatatatatattgaaattgagtaaaagtccatggtataggtaatcgtagagaaaaa
gi|15 : cATGTTTGTTGGTGACT-TATGGCACA-----CGTCTGTAcgccagtagtacatgta
gi|14 : ccATGTTTGTTGGTGACT-TATGGCACA-----CGTCTGTAcgccagtagtacatgt
gi|12 : cATGTTTGTTGGTGACT-TATGGCACA-----CGTCTGTAcgccagtagtacatgta
gi|10 : ccATGTTTGTTGGTGACT-TATGGCACA-----CGTCTGTAcgccagtagtacatgtaagtaaaag
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GCATGCATGCATATATATAGATTGGTTGGAATAGCATGCATATATAGTAAAAGTCCATGGTATAGGTAATGCGTGGAGAAAAA
Unaligned ( gi|11 ): TATATATATATATATATTGAAATTGTAGTAAAAGTCCATGGTATAAGTAATACGTAGAGAAAAA
Unaligned ( gi|13 ): TATGCATGTATTATGAAATTGTAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|17 ): TAAAAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|18 ): TCCATGGTATAGGTAATACGTAGAGAAAAA
Alignments
lowQualScore : 111 2222222222 11111
lowQualScore : 0 000 77 5 4444444444 5 33333 6 6 2 3 3 0
lowQualScore : . ... .. . .......... . ..... . . . . . .
lowQualScore : 1 000 99 7 4444444444 7 77777 7 7 5 3 3 4
consensus : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
Reference ( family-13306 ) : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATGTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
gi|1 : CGACAAGCTAAAAATAAAACAAGGATCATCGAAGT---TTATTTA--TATAACCC-TTAA-TAAGGTTGTTTATTACC-A---GTATTAATTTTTATTC-GC-CGCCATTTTGGATTTTTGCCGGTGACT-TATGGCAC-GTGTCTGTAT
gi|10 : ATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTA
gi|12 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgcatagtacatgtaggtaaagagtaaagggtc
gi|14 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgtaagtaaaag
gi|15 : cATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgta
gi|16 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgt
gi|2 : cGACAAGCTAAAAATAAAACAAGCATCATC-GAGT---TTATTTA--TATAACCC-TTGT-T--------TA-TTACCAA---ATCTTTATTTTTATTCGGCGCGCCATTTTGGATTTTTACCGGTGACTATATGGCACGGCATCTGTATATcgccagtagtacatgta
gi|3 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCAC-GTGTATGTATATata
gi|4 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA----------TT-TTACC-----ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCAC-GTGT-TGTATAT
gi|5 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCAC-GTGTATGTATATc
gi|6 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCAC-GTGTATGTATAT
gi|7 : ATGTTTGCCGGTGACT-TATGGCAC-ACGTCTGTATAT
gi|8 : cGACAAGCTAAAAATAGAACAAGCATCATCAAAGTATGTGATTTGATAATAACTCGTTGACT--------TT-TTATC-AAATATATTTA-CTTTATTacagtactggtatatatatattgaaattgagtaaaagtccatggtataggtaatcgtagagaaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCATGCATGCATATATATAGATTGGTTGGAATAGCATGCATATATAGTAAAAGTCCATGGTATAGGTAATGCGTGGAGAAAAA
Unaligned ( gi|11 ): TATATATATATATATATTGAAATTGTAGTAAAAGTCCATGGTATAAGTAATACGTAGAGAAAAA
Unaligned ( gi|13 ): TATGCATGTATTATGAAATTGTAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|17 ): TAAAAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|18 ): TCCATGGTATAGGTAATACGTAGAGAAAAA
Alignments
lowQualScore : 111 2222222222 11111
lowQualScore : 0 000 77 5 4444444444 5 33333 6 6 1 3 3 0
lowQualScore : . ... .. . .......... . ..... . . . . . .
lowQualScore : 1 000 99 7 4444444444 7 77777 7 7 0 3 3 4
consensus : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
Reference ( family-13306 ) : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
gi|1 : CGACAAGCTAAAAATAAAACAAGGATCATCGAAGT---TTATTTA--TATAACCC-TTAA-TAAGGTTGTTTATTACC-A---GTATTAATTTTTATTC-GC-CGCCATTTTGGATTTTTGCCGGTGACT-TATGGCAC-GTGTCTGTAT
gi|10 : ATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTA
gi|12 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgcatagtacatgtaggtaaagagtaaagggtc
gi|14 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgtaagtaaaag
gi|15 : cATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgta
gi|16 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgt
gi|2 : cGACAAGCTAAAAATAAAACAAGCATCATC-GAGT---TTATTTA--TATAACCC-TTGT-T--------TA-TTACCAA---ATCTTTATTTTTATTCGGCGCGCCATTTTGGATTTTTACCGGTGACTATATGGCACGGCATCTGTATATcgccagtagtacatgta
gi|3 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCAC-GTGTATGTATATata
gi|4 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA----------TT-TTACC-----ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCAC-GTGT-TGTATAT
gi|5 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCAC-GTGTATGTATATc
gi|6 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCAC-GTGTATGTATAT
gi|7 : ATGTTTGCCGGTGACT-TATGGCAC-ACGTCTGTATAT
gi|8 : cGACAAGCTAAAAATAGAACAAGCATCATCAAAGTATGTGATTTGATAATAACTCGTTGACT--------TT-TTATC-AAATATATTTA-CTTTATTacagtactggtatatatatattgaaattgagtaaaagtccatggtataggtaatcgtagagaaaaa
blockSeqs : ATG AT G CT . AAAT G G G A G
blockSeqs : . . . T . AA . . G . .
blockSeqs : . . . T . A . . G . .
blockSeqs : . . . T . A . . G . .
blockSeqs : . . . T . A . . G . .
blockSeqs : . . . . . . T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : G . .
blockSeqCons : T*********
originalCons : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
finalCons : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGAT---------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCATGCATGCATATATATAGATTGGTTGGAATAGCATGCATATATAGTAAAAGTCCATGGTATAGGTAATGCGTGGAGAAAAA
Unaligned ( gi|11 ): TATATATATATATATATTGAAATTGTAGTAAAAGTCCATGGTATAAGTAATACGTAGAGAAAAA
Unaligned ( gi|13 ): TATGCATGTATTATGAAATTGTAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|17 ): TAAAAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|18 ): TCCATGGTATAGGTAATACGTAGAGAAAAA
Alignments
lowQualScore : 111 2222222222 11111
lowQualScore : 0 000 77 5 4444444444 5 33333 6 6 1 3 3 0
lowQualScore : . ... .. . .......... . ..... . . . . . .
lowQualScore : 1 000 99 7 4444444444 7 77777 7 7 0 3 3 4
consensus : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
Reference ( family-13306 ) : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATNTTTGTCGGTGACT-TATGGCAC-GCGTCTGTATAT
gi|1 : CGACAAGCTAAAAATAAAACAAGGATCATCGAAGT---TTATTTA--TATAACCC-TTAA-TAAGGTTGTTTATTACC-A---GTATTAATTTTTATTC-GC-CGCCATTTTGGATTTTTGCCGGTGACT-TATGGCAC-GTGTCTGTAT
gi|10 : ATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTA
gi|12 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgcatagtacatgtaggtaaagagtaaagggtc
gi|14 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgtaagtaaaag
gi|15 : cATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgta
gi|16 : ccATGTTTGTTGGTGACT-TATGGCAC-ACGTCTGTAcgccagtagtacatgt
gi|2 : cGACAAGCTAAAAATAAAACAAGCATCATC-GAGT---TTATTTA--TATAACCC-TTGT-T--------TA-TTACCAA---ATCTTTATTTTTATTCGGCGCGCCATTTTGGATTTTTACCGGTGACTATATGGCACGGCATCTGTATATcgccagtagtacatgta
gi|3 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCAC-GTGTATGTATATata
gi|4 : CGACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA----------TT-TTACC-----ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCGGTGACT-TATGGCAC-GTGT-TGTATAT
gi|5 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCAC-GTGTATGTATATc
gi|6 : GACAAGCTAAAAATAGAACAAGCATCATCAAAGT---TTATTTA--AATAACTC-TTGA-T--------TT-TTACC-A---ATATTTATTTTTATTC-GC-CTCCATTTTGGATTTTTGTCG--GACT-TATGGCAC-GTGTATGTATAT
gi|7 : ATGTTTGCCGGTGACT-TATGGCAC-ACGTCTGTATAT
gi|8 : cGACAAGCTAAAAATAGAACAAGCATCATCAAAGTATGTGATTTGATAATAACTCGTTGACT--------TT-TTATC-AAATATATTTA-CTTTATTacagtactggtatatatatattgaaattgagtaaaagtccatggtataggtaatcgtagagaaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCATGCATGCATATATATAGATTGGTTGGAATAGCATGCATATATAGTAAAAGTCCATGGTATAGGTAATGCGTGGAGAAAAA
Unaligned ( gi|11 ): TATATATATATATATATTGAAATTGTAGTAAAAGTCCATGGTATAAGTAATACGTAGAGAAAAA
Unaligned ( gi|13 ): TATGCATGTATTATGAAATTGTAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|17 ): TAAAAGTCCATGGTATAGGTAATACGTAGAGAAAAA
Unaligned ( gi|18 ): TCCATGGTATAGGTAATACGTAGAGAAAAA