lowQualScore : 111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 8888 22 1 2222 11 999999999999 444444444444444444444 222 666666666666666666666666 11111 11111 7777777777777777777777 111 1111 11 11 1 222222222222 999999999999999999999999999999999999999999999999999999999 1 111111 4444444444 111111 1 1 444444444444444444444444444444 11111 222 1 22222 3333333333 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 7 7 5555 22 3 1111 2 3 22 3 3 3 666666666666 666666666666666666666 333 2 3 8 4 6 000000000000000000000000 4 0 22222 22222 6666666666666666666666 4 000 4444 33 11 0 7777 7 4 333333333333 888888888888888888888888888888888888888888888888888888888 0 6 0 333333 8 4 2222222222 2 7 55 111111 6 4 0 5 5 77 5 7 5 666666666666666666666666666666 4 6 4 77 7777 44444 3 333 5 1 22222 1 1111111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8 2
lowQualScore : . . .... .. . .... . . .. . . . ............ ..................... ... . . . . . ........................ . . ..... ..... ...................... . ... .... .. .. . .... . . ............ ......................................................... . . . ...... . . .......... . . .. ...... . . . . . .. . . . .............................. . . . .. .... ..... . ... . . ..... . .......... .............................................................................................................................................. . .
lowQualScore : 0 0 0000 55 3 7777 5 2 22 2 2 7 000000000000 555555555555555555555 222 9 7 9 4 0 666666666666666666666666 4 2 55555 55555 6666666666666666666666 9 000 8888 88 00 1 1111 0 6 777777777777 777777777777777777777777777777777777777777777777777777777 4 5 9 666666 9 4 5555555555 5 8 44 555555 0 0 7 0 0 66 0 4 5 999999999999999999999999999999 4 0 4 88 1111 66666 3 333 7 5 44444 5 1111111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 2
consensus : AATTTTATTACAA----ATTTCTT-ATCTT-AAGA-C--AGATCTTAGT-CGTAAGATAGTTTTGTGAA-----------ATTTGTCAT--G-AA--TTATT-CGT---AGCCGTTTCACAAAAC--TNTCA-TATCT-TATGATAATCTTAAGAT---------N---------G-TCTGAAATCTT-ACGACATC-----CA-----GA--C--------AN---------CTAAA---CTTA---ACAT-NGCGGC--GGCAT----ATATTTTGGTAAGAAATGGNCA--G--C------TCATCCGGA-G-----G-----AA---C--GT-----ATNT--T-------------C--AGGGACAGAAACAATCCATTAGACTATATGGA---GGAT-A-TGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTC-AATATTTCTTTAGAGCACCCCA-CAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA--TGC-TTTGTTCTCCATTACGCAATGCTAGC----TTCT----T-TTTTGCTC---TCACTGGACAAACACN----TCCA---CG-----TTTT-------AA-------------TATTTCCTCGCCTGAGCGCAA---AT--GG-T----------------TT-GAC-----TT-A-----T----C-------------TGCN-------------ATCT-CC-C-------C-CAGGCCTCTTTTTCAT
Reference ( gi|1 ) : AATTTTTTTTCAATGATATTTTTTTATCTT-AAGA-C--AGATCTTAGT-TGTAAGATAGTTTTGTGAATCTGGCCCCTGGTTTGTCAT--G-AA--TCATT-CAC---AGCTGTTTCACAAAAG--TGTTA-TATCT-TATGACAATCTTAAGAT---------T---------G-TCCGAAATCTT-ACGACATC-----CA-----GA-----------AA---------CTAAA---CTTA---ACAT-TGCGGC--GGCAT----ATATTTTGGTAAGTAATGGACA--T--C------TCATCCGGA-G-----G-----AA---T--AT-----ATAT--T-------------C--AGGGACAGAAACAATCCATAAGACTATATGGA---GGAT-A-TGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTC-AATATTCCTTTAGAGCACACCA-CAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC--TGC-TTTGTTCTTTATCATTCAATGCTAGC----TTCC----T-TTTTGCTC---TCACTGAACATACACA----TTCA---CG-----TTTT-----AAAAAACG---------CAATTCCTTGTCAGAGCACAA---AC--GACT----------------TT-GAC-----TT-A-----T----C-------------TGCA-------------ATCT-CC-A-------C-CAGACCTCTTTTTCAT
gi|15 : AATTTTATTACAA----ATTTCT--ATCTT-CAGA-C--AGATCTTAGT-CGTAAGATAGTTTT
gi|9 : tgtgtagactctgatgtcgtaagatttcaaactatcttaagattatcatatgataggaaagtttttgtgaaacggctatggcgTTTTGATCTTTAAGAAC--A-ATCTTAGT-CGTAAGGTAGTTTTGTAAAa
gi|15 : TATCTT-ACGA-CTAAGATCT--GTCTG-AAGATAG-------AA-----------ATTTGTAAT--A-AA----ATT-CGCCATAGCCGTTTCACAAAAA--CTTTCCTATCA-TATGATAATCTTAAGAT---------A---------G-TTTGAAATCTT-ACGACAT------CA-----GA-----------GT---------CTACA---Cttgcataagattacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
gi|13 : tGATCTTAGT-CGTAAGATAATTTTGTGAAgtttta
gi|2 : gtTTTGTAAT--A-AA----ATT-CGCCATAGCCGTTTCACAAAAA--CTTTCCTATCA-TATGATAATCTTAAGAT---------A---------G-TTTGAAATCTT-ACGACATC------A-----GA-----------GT---------CTA-----C------ACAT-GGCAGC--GGCATGCAAATATTTTGGTAAGAAATAGACA--A--C------TCATCCGAA-G--------------------------------------------------------GAA-----CCGT--GCCTACA-GGACACAGAT-AATGGACA-CATTT--------CTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCC-AATATATCTTTAGAGCATCCCAACAAAAG-ATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCG-TTTTA--TGC-TTTGTTCTCTTTTATTCGATGCTAGC----TTC--------TCTGCTC---TCATTGGACATACACG----TCCA---C--------TT-----AAAA-------------TAA-TCCTTTTCAGAGCGTAATTGATTAGACTCA--------------TT-AACAGCAATT-ACTTTTT----C-------------TGAT-------------ATCT-TC-T-------CTCAGACCTCTTTTTCATagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|3 : tggcannnngatctgtctgaagatagaaaTTTGTCAT--CCAA--TTGAT-CAT---GATTGTT-CACAAAAC--TGTCA-TATCT-TATGATAAGCTT------------------------------AAATATT-ACGA---------CA-----GT-----------A-----------TAAA---CTTA---TCAT-GGCGAC--GGTAA----ATATTTTCGAGAGAAATGGACA--T--T------TCATCGGGAGG-----G-----AA---T--AT-----ATCT--T-------------T----GGA-----------CATTAGACCATATGGA---GAAG-A-TGGACATTATGGACAGGTGTCGTCTTC-------TGTAATCGTTTA------ATTTTCGACGACCTT-AGTATTCCTTGAAAATACCCTA-CAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CCTTTTCAC--TGC-GGTGTTCTCTATTAGTCAATGCTAGA----TTAT----T-TTTTGCTC---TCATAGTAAATACACT----TTCA---CG-----TTTTTTTTC-----------------CATTTCCTCCACAGAGCAAAA---AT--GATTACACATTTAAACAGCATT-GAA-----TTCA-----T----C-------------TGCC-------------ATCC-CC-C-------C-TATATCTTTTTg
gi|13 : gataaatagacatgtctcaaaaccaaaTTTATCATATG-AT--TTAT--CAT---AGTTGTTTCACAAAAAAATGTCA-TATCT-TATGATAATCTTAAGATGGTTTAAGAT---------GGTTTGAAATCTT-AAGACATC-----CA-----GATACATGTCTTAAAT--------CTAAA---CTTA---ACAT-AGCGGC--GGGAT----ATATTTTGGTAAGAAATGGat
gi|20 : gtttcacaaaattatcttacgactaagatcagaaTGTCA---G-AAGATCTAT-CAT---AGCTGTTTTACAAAGC--TGTCA-TATTT-TATGATAATCTTAAGAT---------G---------G-TTTGAAATCTT-cc
gi|9 : taaaaatcaggggccaaaaaaATTACAT---AGCTGTTTCACAAAAC--TGTGA-TATCTGTATGATAATCTTAAGATACA------TGTAACATTAG-TCTGAAATCTTAACGACATC-----CA-----GATCC--------AG---------ATACATGTCTT----ACATGTACGTCTAAGC------ATATTTTGGTAAGAAATTGATAGGT--CAGCCCGTCAGCCGGAGG-----G-----AA---C--GT-----AT-C--T-------------C--AGGGACAAAAGT--TCTCT--GACTGTATGGA---GGAT-A--AGACATTATGGACAAGCTTCGTCTTCCACG
gi|5 : tttacaaaactaccttacgactaagattgttcttaaagatcaaaattgcataagT-CGT---AACTGTTTTACAAAAC--TTTCA-TATCG-TATGATAATCTCA---T---------T---------A-TCTGAA-TTTT-ACGACATCAGATACATATCTGA-----------AGT--------CTAAA---CTTAGATAGAT-TGCtgtattttctat
gi|18 : gattcgGTTTCACAAAAAGCTTTCA-TATCT-TATGATAATCTTAAttatccgaaaggactcaaacaactcattagaaaatatgataaatacggacattatggatactttttgtcttccacggcatatggtctcataatatctgacgaactttaatttcattaagagaaccccatcaaaagagctcacgctctaccaatttcactacaagtgattactgctctccttgtcatgctttgttttctatcattcaaagttagctttgtttctgttttgctctcactgaacgcacaccataacgcgtccacttttttttgtaaattttcctatccagagcgcaac
gi|12 : agtttcacaaaactaccttacgcttgataaaatttgtcctttagaagaTTTCACAAAAC--TATCA-TAATT-TATGATAATCTTTAGATAA-------T---------G-T--GAAATTTT-AAGATGTC-----CA-----GACAC--------AAGTCATAAGTCTAAA---CTTA---GCagggtctatg
gi|27 : aaatatctcatgactattaaagatatgtcttaagatcaaaatttgccatacctttAATCTTAAGAT---------A---------G-TCTGAAATCTT-AAGATATC-----CA-----GA-----------TA---------Cctggtgagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|26 : GCGGC--GGCGT----ATATGTTGGTAAGAAATAGGCatgtcttaag
gi|7 : ccagatgcaggtcttaagtctcagAT----ATATTTTGGTAAGAAATGGCCA--G--C------TCATCCGGA-G-----GG----AA---C--GC-----ATCC--T-------------C--AGG-ACAGAAACAATCCATTCGACTATATGGA---G-AT-A-TGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTC-AGTAT-CCTTTAGAGCAACCCA-CAAAAG-ATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA--TTC-TTTGTTCTCTATTATTTAATGCTAGC----TTCT----T-TTTTGCTC---TCACTGGACATACA
gi|16 : AT----ATATTTTGGTGAGAAGTAGATA--TAGC------TCATCTGG----------------------------------------------------AGGGACAGACACAATTCTTTAGACTATAAAGA---GGAT-A-TGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTC-AACATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|4 : aT----ATATTTTGGTAAGAAATGGCCA--G--C------TCATCCGGA-G-----G-----GAACGT--AC-----ATGT--TTCTTGAATATCGTC--AGGGTCAGAAACAATACATTAGACTA-----------A--A-TGGACATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTC-AATATTTCTTTCGAACACCCCA-CAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA--TGC-TTTGTTCTCCATTACGCAATGCTAGC----TTCT----T-TTTTGCTCTCATCACTAGACAAACACC----TCCAGTTTGGTTTTTTTT----------------------TATTTCCTCGCCTGAGTGCAA---AT--GG-T----------------TA-GAC-----AT-A-----C----CGGTATAAACGGCATGTACTTT---------ATCTGCC-ATCTCCTCC-CAGGCCTCTTTTTCAT
gi|6 : atcaaattttgagtagT----ATATTTTGATAAGAAATGGCCG--G--C------TCATCCAGA-G-----GGAACGAA---T--ATCTTGAATATCTT-------------C--AGGTTCAGAAGCAATCCATAAGACTATATGG----GCATGA-TGGG----------AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTC-AATATTTCTTTCGAGCACCCCA-CAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAAG------------------------TTTCAATGC-TTTGTTCTCCATTACGCAATGCTTGC----TTCT----T-TTTTGATC---TCGCTGGACAAACACT----TCCA---GG-----TTTa
gi|8 : atcaaattttgagtagT----ATATTTTGAATAGAAATGGCCA--G--T------TCATCCTTA-GTGACCG-----AA---T--ATCTTGAATATCTT-------------C--AGGGTCAGAAACAACCCATTAGACTATATG-A---GCATTA-TGG---------------GTCGTCTTCCACGCCACGTGATCT-ATA------ATCTCTGACGAGCTC-AATATTTCTTTCGAGCACCCCA-CAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-------GGC-----TCTCCCGTTTTAA--TGCTTTTGTTCTCCATTACGCAATGCTAGC----TTCT----T-TTTTGATC---TCACTGGACA-AAAC-----TTCA---GG-----TTTT-----gtttttttttttttatttcctcgcctgagcgcatatggttagacatacatgtatttacggcatgtactttatctgctatctcctcccagtcctctttttcat
gi|21 : caaattttgagtagT----ATATTTTGGTAAGAAATGGCCA--G--C------TCATCCGGA-G-----AT----AA---CGAAT-----ATCT--T-------------------GA-AGAAACAATCCATAAGACTATATGGtttcctcgcctgacagcgcaaat
gi|23 : atcaaattttgagtagT----ATATTTTGGTAAGAATTGGGCA--G--C------TCATACGGAGG-----G-----AA---C--GT-----ATCT--T-------------------GA-AGAAACAATCCTTTAGACTgc
gi|5 : ttgagtagTAT--C-------------CGAAAGGACTCAAACAACTCATTAGAAAATATGAT---AAAT-A-CGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTAAT-TTCATTAAGAGAACCCCA-TCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC--TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTC----TGTTTTGCTC---TCACTGAACGCACAC
gi|10 : gattcgtcgtaactgttttacaaaactttcatatcgtatgataatctcattatctgaattttacgacatcagatacatatctgaagtctaaacttagatagattgctAGTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTC-AATATTTCTTTACAGCACCCCA--AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTATTAA-----T-----GTTTCC-----------TTCTCCATTACGCAATGCTAGC----TTGT----T-TTTTGCTC---TCACTGGACAAACACG----TCCT---CT-----TTTT-----TCAAAAT-------------TTCCTCGCCTGAGAGCAA---AT--G--T----------------TTAGACGACT-TT-A-----T----C-------------TGCT-------------ATCT-TC-cataacgcgtccacttttttttgtaaattttcctatccagagcgcaac
gi|31 : atggacA------ATCTCTGACGAGCTC-AATATTTCTTTtctat
gi|19 : -TTTGTTCTCCATTACGCATTGCTAGA----TTCT----T-CTTTGCTCTTATCACTGGACAAACACC----TCCA----G-----TTTT-----cg
gi|17 : TGTTCTCCATTACGCAATGCTACC----TTATATTAT-TTTTGCTC---TCAATGGACAAACACAACACTTCA---AC-----TTTT-----Attgggtttttttaaaaatattttttatt
gi|22 : CAATGCTAGC----TTCT----T-TTTTGCTCTCATCATTAGACAAACACC----TCCA----G-----TTTT-----tttttttccctcaccttagagcaaat
gi|14 : AGC----TTCT----T-TTTTGCTCTCATCACTGGACAACCACT----TCCA----G-----TTTT------------GTTTTTTTTTTATTTCCCCGCCTGAGCGCAA---AT--GG-T----------------TA-GAC-----AT-A-----TTAAAC-------------GGCATTATTAATACTCTATCC-CT-C-------C-CAGGCCTCTTTTTCATtttgttttttttatttcctcgcctgagcgca
gi|6 : -----TT-A-----T----C-------------TGCT-------------ATCT-CCTC-------C-CAGTCCTCTTTTTCATaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CCCAATTAAAAAGATCCAGCTTCTAGGCCACTTCAGCTGCAGATGCTTTCCCATTTATGAGTCTCACATCTACTCATTTTAGAGATCCATCTACATCTTGACAACCTTAGAATCTACTTTATTTATTTTTCACTCGCCTGAGCGCAAAATGGTTAGACATAATATAACGGCATTACCCTTTTAATATCTAGTCTATCATCCTCCCAGGTTTCACTCTTTTTTACATA
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 666666 1 222222 222222 33333333333333333333333333 44444444444444444444 11111 1111111111 2222222222222 77777777777777777777777777777777777 1 66666666666666666666666666666666666666666 111111 222222222222222 111 11111111 666666666666666666666666666666666666666666666666 77777777777777777777777777777777777777777777777777777777777777777777777777 1
lowQualScore : 4 77 111111 6 0 8 6 6 888888 000000 0 66 4 55555555555555555555555555 77777777777777777777 7 44444 1 4 5555555555 1 0000000000000 0 4 3 22222222222222222222222222222222222 1 7 66 77 6666 77777 1 44 555 0 3 11111111111111111111111111111111111111111 4 2 7777 3 1 0 9 3 3 000000 4 11 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 999999999999999999999999999999999999999999999999 3 44 3 44 3 5 00000000000000000000000000000000000000000000000000000000000000000000000000 1 5 1 2
lowQualScore : . .. ...... . . . . . ...... ...... . .. . .......................... .................... . ..... . . .......... . ............. . . . ................................... . . .. .. .... ..... . .. ... . . ......................................... . . .... . . . . . . ...... . .. . ............... .... . . . . ..... .... ... ... ........ . ................................................ . .. . .. . . .......................................................................... . . . .
lowQualScore : 0 00 000000 0 0 0 7 7 333333 000000 1 11 4 99999999999999999999999999 77777777777777777777 1 00000 0 0 9999999999 4 9999999999999 4 4 9 22222222222222222222222222222222222 4 3 00 99 1111 11111 0 66 888 0 3 33333333333333333333333333333333333333333 6 5 7777 7 1 9 2 2 3 555555 0 99 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 333333333333333333333333333333333333333333333333 3 66 3 66 3 0 33333333333333333333333333333333333333333333333333333333333333333333333333 0 7 4 2
consensus : AATCTTNTTNCAATGATATTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATC----------TTAAGATA------------GTCTGAAATCTTA-CGACATCCAGA--T-----------AN-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGA-G-G-AA-CG-----------TATCT---------------TCAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TT-TT------NN------T--------AT-TT--C-CTCGCCTG--AGCGC-AAATGG-T-----------------TAGACA-AC--------A-----------TT-A------------------T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
Reference ( family-1312 ) : AATTTTATTACAA----ATTTCTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCCGTTTCACAAAA--C--TNTCATATCT-TATGATAATC----------TTAAGATN------------GTCTGAAATCTTA-CGACATCCAGA--C-----------AN-----------CTAAA---CTTAACATN-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGA-G-G-AA-CG-----------TATNT---------------TCAGGGACAGAAACAATCCATTAGACTATATGGAGGATATGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TT-TT------AA------T--------AT-TT--C-CTCGCCTG--AGCGC-AAATGG-T-----------------TTGAC------------------------TT-A------------------T-----CTGCNATC-TCC-CCCAGGCCTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C------AGATCTTA----GTTG--TAAGAT-AGTTTT-----G-TGAATCTGGCCCCTGGTTTGTCAT--G-A-A---TCATTCA---CAGCTGTTTCACAAAA--G--TGTTATATCT-TATGACAATC----------TTAAGATT------------GTCCGAAATCTTA-CGACATCCAGA--------------AA-----------CTAAA---CTTAACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGA-G-G-AA-TA-----------TATAT---------------TCAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TT-TT------AAAAAACGC--------AA-TT--C-CTTGTCAG--AGCAC-AAACGACT-----------------TTGAC------------------------TT-A------------------T-----CTGCAATC-TCC-ACCAGACCTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------CT----------TT-TTTC----AA------A--------AT-TT--C-CTCGCCTG--AGAGC-AAATGT-T-----------------TAGACGACT--------------------TT-A------------------T-----CTGCTATC-TTC-TCTA
gi|11 : TCTA-------CT----------TTATT------TA------T--------TT-TT--CACTCGCCTG--AGCGCAAAATGG-T-----------------TAGAC------------------------AT-A------------------t
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaT-ATCTC-ATG-A-CTATTAAAGATAT------GTCT--TAAGAT--------------CAAA-----------ATTTGCCAT------A---CCTTT-----------TTTCACAAAA--C--TATCATAATT-TATGATAATC----------TTTAGATA------------ATGTGAAATTTTA-AGATGTCCAGA--C-----------ACAAGTCATAAGTCTAAA---CTTAGCCTG-GTGatataacggcattacccttttaatatctagtctatcatcctcccaggtttcactcttttttacata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-AATTTT-----G-TGAA-----------Aagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gATCTTA------CGACTAAGATCAG--------------A-----------ATTTATCATATG-A-T---TTAT-CA---TAGTTGTTTCACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATGGTTTAAGATG------------GTTTGAAATCTTA-AGACATCCAGA--TACATGTCTTAAAT-----------CTAAA---CTTAACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCA--------G----------TT-TT------GT------TTTTTTTTTAT-TT--C-CCCGCCTG--AGCGC-AAATGG-T-----------------TAGACATATTAAACGGCA-----------TT-A------------------TTAATACT-CTATC-CCT-CCCAGGCCTCTTTTTCAT
gi|15 : T-ATCTT-ACG-A-CTA----AGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATC----------TTAAGATA------------GTTTGAAATCTTA-CGACAT-CAGA--aa
gi|16 : tgtgtagacAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGA-G-G------------------------------------------GACAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------C-----------TT-TT------AT------T--------TT-TTTCC-CTCACCTT--AGAGC-AAAT
gi|18 : TCTA-AAGGA-C------AAATTTTATCAAG-CG--TAAGGT-AGTTTT-----G-TGAA-----------ACT
gi|18 : TT-----GATAAA-----------ATTTGTCCT----------TTA---G---AAGA-GTTTCACAAAAAGC--TTTCATATCT-TATGATAATC----------TTAA-AGG------------GTCTagagtttcacaaaaagctttcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgc-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TT-TT------atg
gi|2 : AN-N-N------NGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATC----------TTAAGATA------------GTTTGAAATCTTA-CGACAT-CAGA--------------GT-----------CT--A---C---ACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAA-G-G-AACCG-----------TGCCT---------------ACA-GGACACAGATAATttgggtttttttaaaaatattttttatt
gi|2 : tggcAGGACACAGATA--ATGGACACATTTCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C--------------TT------AA------A--------ATAAT--C-CTTTTCAG--AGCGT-AATTGA-T-----------------TAGAC------------------------TC-ATTAACAGCAATTACTTTTT-----CTGATATCTTCT-CTCAGACCTCTTTTTCATggacacatttcttcttccacagcacgtggtctttaatctcggacgaacccaatatatctttagagcatcccaacaaaagatcccattttgtaccaacttcactgcaagtgattgttgctctcttctccgttttatgctttgttctcttttattcgatgctagcttctctgctctcattggacatacacgtccacttaaaataatccttttcagagcgtaattgattagactcattaacagcaattactttttctgatatcttctctcagacctctttttcatg
gi|20 : tggcannnngatctgtctgaagatagaaatttgtaataaaattcgccatagccgtttcacaaaaactttcctatcatatgataatcttaagatagtttgaaatcttacgacatcagagtctacacatggcagcggcatgcaaatattttggtaagaaatagacaactcatccgaaggaaccgtgcctacTGTCA---G-A-AGATCTAT-CA---TAGCTGTTTTACAAAG--C--TGTCATATTT-TATGATAATC----------TTAAGATG------------GTTTGAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGA-G-ATAA-CGAA---------TATCT---------------T----GA-AGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TT-TT------TT------T--------AT-TT--C-CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGG-G-AA-CG-----------TATCT---------------T----GA-AGAAACAATCCTTTAGACT
gi|26 : ttgagtag-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : ccagatgcaggtcttaagtctcagAATC----------TTAAGATA------------GTCTGAAATCTTA-AGATATCCAGA--T-----------A
gi|3 : AA-----------ATTTGTCAT--CCA-A---TTGATCA---TGATTGTT-CACAAAA--C--TGTCATATCT-TATGATAAGC----------TTAA-----------------------ATATTA-CGACA--------------------GT-----------ATAAA---CTTATCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGAGG-G-AA-TA-----------TATCT---------------TT--GGA-----------CATTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTC-------TGTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TT-TT------TT------TTCC-----AT-TT--C-CTCCACAG--AGCAA-AAATGA-TTACACATTTAAACAGCATTGAA------------------------TTCA------------------T-----CTGCCATC-CCC-CCTATATCTTTTTcatgtcttaag
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGA-G-GGAA-CG-----------TACATGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTA--------A-ATGGACATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TT-TT------TT------T--------AT-TT--C-CTCGCCTG--AGTGC-AAATGG-T-----------------TAGACATACCGGTATAAACGGCATGTACTTT-A------------------T-----CTGCCATC-TCCTCCCAGGCCTCTTTTTCATcg
gi|5 : atcaaattttgagtagTCG---TAACTGTTTTACAAAA--C--TTTCATATCG-TATGATAATC----------TCA---TT------------ATCTGAA-TTTTA-CGACATC-AGA--T-----------A-------------------------CATA-TCTGA--AGTCT----AAACTT-------AGAT-----AGATT--GC---TTATCCGAA-A-G-GA-C--------------------------------TCA--------AACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TT-TTTTTGTAAA------T---------T-TT--C-CTATCCAG--AGCGC-AAa
gi|6 : gattcgT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGA-G-GGAA-CGAATATCTTGAATATCT---------------TCAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTT-TT------TT------T--------AT-TT--C-CTCGCCTG--AGCGC-ATATGG-T-----------------TAGACATACATGTATTTACGGCATGTACTTT-A------------------T-----CTGCTATC-TCCTCCCAGTCCTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGG-G-AA-CG-----------CATCC---------------TCA-GGACAGAAACAATCCATTCGACTATATGGA-GATATGTACATTATGGGCAAGTGTCGTCTT------CACGTCATCTTCTA------ATCTCTGACGAGCTCAGTA-TCC-TTTAGAGCAACCCAC-AAAAGATCTCA-TGCCCTACCAACTTCACTGC-AGTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTA-GTG-AC-CGAATATCTTGAATATCT---------------TCAGGGTCAGAAACAACCCATTAGACTATAT-GAG--------CATTATGG------GTCGTCTTCCACGCCACGTGATC-TATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TT-TT------------------------T-TT--C-CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GCAA------TTTTG-ATCTTTAAG-AAC------A-ATCTTA----GTCG--TAAGGT-AGTTTT-----G-TAAA-----------
gi|9 : --TAAGAT-TGTTCTTAAAGA-TCAA-----------AATTG-CAT--A-AGA---TTA--CA---TAGCTGTTTCACAAAA--C--TGTGATATCTGTATGATAATC----------TTAAGATACATGTAACATTAGTCTGAAATCTTAACGACATCCAGATCC-----------AG-----------ATACATGTCTTA-CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGA-G-GGAA-CG-----------TATCT----------------CAGGGACAAAAGT--TCTCT--GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 11 222222 222222 33333333333333333333333333 44444444444444444444 11111 22222222222222222222222222 77777777777777777777777777777777777 55555555555555555555555555555555555555555 1111111 111111 222222222222222 111 11111111 5555555555555555555555555555555555555555555 11111111 333333333333333333333333333333333333333333333333333333333333333333333333 1
lowQualScore : 1 00000000000 33 8 6 6 888888 000000 0 66 4 55555555555555555555555555 77777777777777777777 1 44444 1 4 1 00000000000000000000000000 4 3 00000000000000000000000000000000000 1 7 5 77 6666 77777 1 44 555 3 3 77777777777777777777777777777777777777777 0 0 2 7777777 1 0 9 3 3 000000 4 0 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 7777777777777777777777777777777777777777777 3 3 44 3 5 88888888 666666666666666666666666666666666666666666666666666666666666666666666666 5 1 0
lowQualScore : . ........... .. . . . ...... ...... . .. . .......................... .................... . ..... . . . .......................... . . ................................... . . . .. .... ..... . .. ... . . ......................................... . . . ....... . . . . . ...... . . . ............... .... . . . . ..... .... ... ... ........ . ........................................... . . .. . . ........ ........................................................................ . . .
lowQualScore : 0 33333333333 66 0 7 7 333333 000000 1 11 4 99999999999999999999999999 77777777777777777777 3 00000 6 0 4 11111111111111111111111111 4 9 22222222222222222222222222222222222 4 3 0 99 1111 11111 0 66 888 3 3 55555555555555555555555555555555555555555 4 1 5 9999999 1 9 2 2 3 555555 0 1 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 3333333333333333333333333333333333333333333 3 3 66 3 0 11111111 777777777777777777777777777777777777777777777777777777777777777777777777 7 4 3
consensus : AATCTTTTTGCAATGA-ACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGA-G-GGAA-CG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TT-T-T------TTT---A-----T-TTC-CTCGCCTG--AGCGC-AAATGG-TTA--------GAC-----AT-------------------AC----A-------------------TT------A-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
Reference ( family-1312 ) : AATCTTNTTNCAATGATATTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGA-G-G-AA-CG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TT-T-T------NNT---A-----T-TTC-CTCGCCTG--AGCGC-AAATGG-TTA--------GAC-----A--------------------AC----A-------------------TT------A-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C------AGATCTTA----GTTG--TAAGAT-AGTTTT-----G-TGAATCTGGCCCCTGGTTTGTCAT--G-A-A---TCATTCA---CAGCTGTTTCACAAAA--G--TGTTATATCT-TATGACAATCTTAAGATT------------GTCC----------GAAATCTTA-CGACATCCAGA---A-----------A-----------CTAAA---CTTAACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGA-G-G-AA-TA-----------TA------TATT---------CAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TT-T-TAAAAAACGC---A-----A-TTC-CTTGTCAG--AGCAC-AAACGACTTT--------GAC----------------------------------------------------TT------A-----T-----CTGCAATC-TCC-ACCAGACCTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------CT----------TT-T-TTC----AAA---A-----T-TTC-CTCGCCTG--AGAGC-AAATGT-TTA--------GAC-----G--------------------AC----T-------------------TT------A-----T-----CTGCTATC-TTC-TCTA
gi|11 : TCTA-------CT----------TTAT-T------TAT---T-----T-TTCACTCGCCTG--AGCGCAAAATGG-TTA--------GAC-----A--------------------t
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaT-ATCTC-ATG-A-CTATTAAAGATAT------GTCT--TAAGAT--------------CAAA-----------ATTTGCCAT------A---CCTTT-----------TTTCACAAAA--C--TATCATAATT-TATGATAATCTTTAGATA------------ATGT----------GAAATTTTA-AGATGTCCAGAC--ACAAGTCATAAGT-----------CTAAA---CTTAGCCTG-GTGtaatataacggcattacccttttaatatctagtctatcatcctcccaggtttcactcttttttacata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-AATTTT-----G-TGAA-----------Aagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gATCTTA------CGACTAAGATCAG--------------A-----------ATTTATCATATG-A-T---TTAT-CA---TAGTTGTTTCACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATG------------GTTTAAGATGGTTTGAAATCTTA-AGACATCCAGAT--A-----------CATGTCTTAAATCTAAA---CTTAACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCAGTTT---TG----------TT-T-T------TTTTTTA-----T-TTC-CCCGCCTG--AGCGC-AAATGG-TTA--------GAC-----ATATTAAACG-----------GC----A-------------------TT------A-----TTAATACT-CTATC-CCT-CCCAGGCCTCTTTTTCAT
gi|15 : T-ATCTT-ACG-A-CTA----AGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGAaa
gi|16 : tgtgtagacAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGA-G-G------------------------------------------GACAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------CT----------TT-TAT------TTT---T-----T-TCC-CTCACCTT--AGAGC-AAAT
gi|18 : AAGCTTTTTG---TGAAACTCTT----CTA-AAGGA-C------AAATTTTATCAAG-CG--TAAGGT-AGTTTT-----G-TGAA-----------ACT
gi|18 : TT-----GATAAA-----------ATTTGTCCT----------TTA---G---AAGA-GTTTCACAAAAAGC--TTTCATATCT-TATGATAATCTTAA-AGG------------GTCT----------tcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgc-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TT-T-T------atg
gi|2 : AN-N-N------NGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGA---G-----------T-----------CT--A---C---ACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAA-G-G-AACCG-----------TG------CCTA---------CA-GGACACAGATAATttgggtttttttaaaaatattttttatt
gi|2 : tggcAGGACACAGATA--ATGGACACATTTCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C--------------T-T------AAA---A-----TAATC-CTTTTCAG--AGCGT-AATTGA-TTA--------GACTCATTA--------------------ACAGCAA-------------------TT------ACTTTTT-----CTGATATCTTCT-CTCAGACCTCTTTTTCATggacacatttcttcttccacagcacgtggtctttaatctcggacgaacccaatatatctttagagcatcccaacaaaagatcccattttgtaccaacttcactgcaagtgattgttgctctcttctccgttttatgctttgttctcttttattcgatgctagcttctctgctctcattggacatacacgtccacttaaaataatccttttcagagcgtaattgattagactcattaacagcaattactttttctgatatcttctctcagacctctttttcatg
gi|20 : tggcannnngatctgtctgaagatagaaatttgtaataaaattcgccatagccgtttcacaaaaactttcctatcatatgataatcttaagatagtttgaaatcttacgacatcagagtctacacatggcagcggcatgcaaatattttggtaagaaatagacaactcatccgaaggaaccgtgcctacTGTCA---G-A-AGATCTAT-CA---TAGCTGTTTTACAAAG--C--TGTCATATTT-TATGATAATCTTAAGATG------------GTTT----------GAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGA-G-ATAA-CGAA---------TA------TCTT-------------GA-AGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TT-T-T------TTT---A-----T-TTC-CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGG-G-AA-CG-----------TA------TCTT-------------GA-AGAAACAATCCTTTAGACT
gi|26 : ttgagtagG-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : ccagatgcaggtcttaagtctcaAATCTTAAGATA------------GTCT----------GAAATCTTA-AGATATCCAGAT--A-----------
gi|3 : AA-----------ATTTGTCAT--CCA-A---TTGATCA---TGATTGTT-CACAAAA--C--TGTCATATCT-TATGATAAGCTTAA-ATA--------------------------------TTA-CGACA-----GT--A------------------------TAAA---CTTATCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGA-G-GGAA-TA-----------TA------TCTT---------T--GGACA-----------TTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTCT-------GTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TT-T-T------TTTTCCA-----T-TTC-CTCCACAG--AGCAA-AAATGA-TTACACATTTAAAC-----A--------------------GC----A-------------------TTGAATTCA-----T-----CTGCCATC-CCC-CCTATA--TCTTTTTcatgtcttaag
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGA-G-GGAA-CG-----------TACATGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTAAATGGA---------CATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TT-T-T------TTT---A-----T-TTC-CTCGCCTG--AGTGC-AAATGG-TTA--------GAC-----ATACCGGTATAAACGGCATGTAC----T-------------------TT------A-----T-----CTGCCATC-TCCTCCCAGGCCTCTTTTTCATcg
gi|5 : atcaaattttgagtagTCG---TAACTGTTTTACAAAA--C--TTTCATATCG-TATGATAATCTCA---TT------------ATCT----------GAA-TTTTA-CGACATC-AGAT--A------------------------------------CATA-TCTGA--AGTCT----AAACTT-------AGAT-----AGATT--GC---TTATCCGAA-A-G-GA-C-----------------------T---------CA--------AACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TT-T-T------TTT---GTAAATT-TTC-CTATCCAG--AGCGC-AAa
gi|6 : gattcgT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGA-G-GGAA-CGAATATCTTGAATA------TCTT---------CAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTT-T-T------TTT---A-----T-TTC-CTCGCCTG--AGCGC-ATATGG-TTA--------GAC-----AT-------------------AC----ATGTATTTACGGCATGTACTTT------A-----T-----CTGCTATC-TCCTCCCAGTCCTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGA-G-GGAA-CG-----------CA------TCCT---------CAGG-ACAGAAACAATCCATTCGACTATATGGAG-ATATGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTCAGTATC-C-TTTAGAGCAACCCACAAAA-GATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTA-GTG-AC-CGAATATCTTGAATA------TCTT---------CAGGGTCAGAAACAACCCATTAGACTATAT-GAG--------CATTATGG------GTCGTCTTCCACGCCACGTGATC-TATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TT-T-T------------------T-TTC-CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GCAAT------TTTG-ATCTTTAAG-AAC------A-ATCTTA----GTCG--TAAGGT-AGTTTT-----G-TAAA-----------
gi|9 : --TAAGAT-TGTTCTTAAAGA-TCAA-----------AATTG-CAT--A-AGA---TTA--CA---TAGCTGTTTCACAAAA--C--TGTGATATCTGTATGATAATCTTAAGATACATGTAACATTAGTCT----------GAAATCTTAACGACATCCAGATCCA-----------G-----------ATACATGTCTTA-CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGA-G-GGAA-CG-----------TA------TCT----------CAGGGACAAAAGT--TCTCT--GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 333333 11 222222 222222 33333333333333333333333333 44444444444444444444 11111 22222222222222222222222222 77777777777777777777777777777777777 555555555555555555555555555555555555555 1111111 111111 222222222222222 111 11111111 5555555555555555555 222222222222222222 444444444444444444444444444444444444444 11111111111 1
lowQualScore : 7 777777 33 8 6 6 888888 000000 0 66 4 55555555555555555555555555 77777777777777777777 1 44444 1 4 1 00000000000000000000000000 4 3 00000000000000000000000000000000000 1 7 5 77 6666 77777 1 44 555 3 333333333333333333333333333333333333333 2 7777777 1 0 9 1 3 3 000000 4 0 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 0000000000000000000 3 000000000000000000 44 555 44 3 5 66 888888888888888888888888888888888888888 99999999999 5 1 0
lowQualScore : . ...... .. . . . ...... ...... . .. . .......................... .................... . ..... . . . .......................... . . ................................... . . . .. .... ..... . .. ... . ....................................... . ....... . . . . . . ...... . . . ............... .... . . . . ..... .... ... ... ........ . ................... . .................. .. ... .. . . .. ....................................... ........... . . .
lowQualScore : 3 333333 66 0 7 7 333333 000000 1 11 4 99999999999999999999999999 77777777777777777777 3 00000 6 0 4 11111111111111111111111111 4 9 22222222222222222222222222222222222 4 3 0 99 1111 11111 0 66 888 2 333333333333333333333333333333333333333 5 9999999 1 9 2 4 2 3 555555 0 1 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 6666666666666666666 1 999999999999999999 66 888 66 3 0 99 666666666666666666666666666666666666666 66666666666 7 4 3
consensus : AATCTTTTTGCGAT-A-ACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
Reference ( family-1312 ) : AATCTTTTTGCAATGA-ACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C------AGATCTTA----GTTG--TAAGAT-AGTTTT-----G-TGAATCTGGCCCCTGGTTTGTCAT--G-A-A---TCATTCA---CAGCTGTTTCACAAAA--G--TGTTATATCT-TATGACAATCTTAAGATT------------GTCC----------GAAATCTTA-CGACATCCAGA---A-----------A-----------CTAAA---CTTAACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGA-GGAATA-----------TA------TATT---------CAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TTT-TAAAAAACGC---A-----AT--TC---CTTGTCAG--AGCAC-AAACGACTTTGA--C----------------------------------------TTA-----T-----CTGCAATC-TCC-ACCAGACCTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------C-----------TTT-T------TTCAAAA-----TT--TC---CTCGCCTG--AGAGC-AAATGT-TTAGA--CG-----A--------C----T-------------------TTA-----T-----CTGCTATC-TTC-TCTA
gi|11 : TCTA-------C-----------TTT-A------TTT---A-----TT--TTTCACTCGCCTG--AGCGCAAAATGG-TTAGA--CAT----A--------t
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaT-ATCTC-ATG-A-CTATTAAAGATAT------GTCT--TAAGAT--------------CAAA-----------ATTTGCCAT------A---CCTTT-----------TTTCACAAAA--C--TATCATAATT-TATGATAATCTTTAGATA------------ATGT----------GAAATTTTA-AGATGTCCAGAC--ACAAGTCATAAGT-----------CTAAA---CTTAGCCTG-GTGatataacggcattacccttttaatatctagtctatcatcctcccaggtttcactcttttttacata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-AATTTT-----G-TGAA-----------Aagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gATCTTA------CGACTAAGATCAG--------------A-----------ATTTATCATATG-A-T---TTAT-CA---TAGTTGTTTCACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATG------------GTTTAAGATGGTTTGAAATCTTA-AGACATCCAGAT--A-----------CATGTCTTAAATCTAAA---CTTAACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCAGTTT---TG----------TTT-TTTT---TTT---A-----TT--TC---CCCGCCTG--AGCGC-AAATGG-TTAGA--CAT----ATTAAACGGC----A-------------------TTA-----TTAATACT-CTATC-CCT-CCCAGGCCTCTTTTTCAT
gi|15 : T-ATCTT-ACG-A-CTA----AGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGAaa
gi|16 : tgtgtagacAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGAGGGA-----------------------------------------CAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------CT----------TTTAT------TTT---T-----TT--CC---CTCACCTT--AGAGC-AAAT
gi|18 : AAGCTTTTTGTGA--A-ACTCTT----CTA-AAGGA-C------AAATTTTATCAAG-CG--TAAGGT-AGTTTT-----G-TGAA-----------ACT
gi|18 : TT-----GATAAA-----------ATTTGTCCT----------TTA---G---AAGA-GTTTCACAAAAAGC--TTTCATATCT-TATGATAATCTTAA-AGG------------GTCT----------tcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgc-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TTT-T------TTatg
gi|2 : AN-N-N------NGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGA---G-----------T-----------CT--A---C---ACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAAGGAACCG-----------TG------CCTA---------CA-GGACACAGATAATgggtttttttaaaaatattttttatt
gi|2 : tggcAGGACACAGATA--ATGGACACATTTCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C---------------T------TAA---A-----ATAATC---CTTTTCAG--AGCGT-AATTGA-TTAGACTCATTA--A--------CAGCAA-------------------TTACTTTTT-----CTGATATCTTCT-CTCAGACCTCTTTTTCATggacacatttcttcttccacagcacgtggtctttaatctcggacgaacccaatatatctttagagcatcccaacaaaagatcccattttgtaccaacttcactgcaagtgattgttgctctcttctccgttttatgctttgttctcttttattcgatgctagcttctctgctctcattggacatacacgtccacttaaaataatccttttcagagcgtaattgattagactcattaacagcaattactttttctgatatcttctctcagacctctttttcatg
gi|20 : tggcannnngatctgtctgaagatagaaatttgtaataaaattcgccatagccgtttcacaaaaactttcctatcatatgataatcttaagatagtttgaaatcttacgacatcagagtctacacatggcagcggcatgcaaatattttggtaagaaatagacaactcatccgaaggaaccgtgcctacTGTCA---G-A-AGATCTAT-CA---TAGCTGTTTTACAAAG--C--TGTCATATTT-TATGATAATCTTAAGATG------------GTTT----------GAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGATAACGAA---------TA------TCTT-------------GA-AGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGGGAACG-----------TA------TCTT-------------GA-AGAAACAATCCTTTAGACT
gi|26 : ttgagtagG-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : ccagatgcaggtcttaagtctcaAATCTTAAGATA------------GTCT----------GAAATCTTA-AGATATCCAGAT--A-----------
gi|3 : AA-----------ATTTGTCAT--CCA-A---TTGATCA---TGATTGTT-CACAAAA--C--TGTCATATCT-TATGATAAGCTTAA-ATA--------------------------------TTA-CGACA-----GT--A------------------------TAAA---CTTATCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGAGGGAATA-----------TA------TCTT---------T--GGA-----------CATTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTC-------TGTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TTT-T------TTTTCCA-----TT--TC---CTCCACAG--AGCAA-AAATGA-TTACA--CATTTAAA--------C----AGCATTGAAT----------TCA-----T-----CTGCCATC-CCC-CCTATATCTTTTTcatgtcttaag
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------TACATGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTAAATGGA---------CATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGTGC-AAATGG-TTAGA--CAT----A--------CCGGTATAAACGGCATGTACT----TTA-----T-----CTGCCATC-TCCTCCCAGGCCTCTTTTTCATcg
gi|5 : atcaaattttgagtagTCG---TAACTGTTTTACAAAA--C--TTTCATATCG-TATGATAATCTCA---TT------------ATCT----------GAA-TTTTA-CGACATC-AGAT--A------------------------------------CATA-TCTGA--AGTCT----AAACTT-------AGAT-----AGATT--GC---TTATCCGAAAGGA------------------------CT---------CA--------AACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TTT-T------TTT---GTAAATTT--TC---CTATCCAG--AGCGC-AAa
gi|6 : gattcgT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGAGGGAACGAATATCTTGAATA------TCTT---------CAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-ATATGG-TTAGA--CAT----A--------C----ATGTATTTACGGCATGTACTTTA-----T-----CTGCTATC-TCCTCCCAGTCCTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------CA------TCCT---------CAGG-ACAGAAACAATCCATTCGACTATATGGAG-ATATGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTCAGTATC-C-TTTAGAGCAACCCACAAAA-GATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTAGTGACCGAATATCTTGAATA------TCTT---------CAGGGTCAGAAACAACCCATTAGACTATAT-GAG--------CATTATGG------GTCGTCTTCCACGCCACGTGATC-TATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TTT-T------------------TT--TC---CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GCAAT------TTTG-ATCTTTAAG-AAC------A-ATCTTA----GTCG--TAAGGT-AGTTTT-----G-TAAA-----------
gi|9 : --TAAGAT-TGTTCTTAAAGA-TCAA-----------AATTG-CAT--A-AGA---TTA--CA---TAGCTGTTTCACAAAA--C--TGTGATATCTGTATGATAATCTTAAGATACATGTAACATTAGTCT----------GAAATCTTAACGACATCCAGATCCA-----------G-----------ATACATGTCTTA-CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGAGGGAACG-----------TA------TCT----------CAGGGACAAAAGT--TCTCT--GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 333333333333 222222 222222 33333333333333333333333333 44444444444444444444 11111 22222222222222222222222222 77777777777777777777777777777777777 555555555555555555555555555555555555555 1111111 111111 222222222222222 111 11111111 5555555555555555555 222222222222222222 444444444444444444444444444444444444444 11111111111 1
lowQualScore : 666666666666 5 8 6 6 888888 000000 0 66 4 55555555555555555555555555 77777777777777777777 1 44444 1 4 1 00000000000000000000000000 4 3 00000000000000000000000000000000000 1 7 5 77 6666 77777 1 44 555 3 333333333333333333333333333333333333333 2 7777777 1 0 9 1 3 3 000000 4 0 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 0000000000000000000 3 000000000000000000 44 555 44 3 5 66 888888888888888888888888888888888888888 99999999999 5 1 0
lowQualScore : ............ . . . . ...... ...... . .. . .......................... .................... . ..... . . . .......................... . . ................................... . . . .. .... ..... . .. ... . ....................................... . ....... . . . . . . ...... . . . ............... .... . . . . ..... .... ... ... ........ . ................... . .................. .. ... .. . . .. ....................................... ........... . . .
lowQualScore : 777777777777 6 0 7 7 333333 000000 1 11 4 99999999999999999999999999 77777777777777777777 3 00000 6 0 4 11111111111111111111111111 4 9 22222222222222222222222222222222222 4 3 0 99 1111 11111 0 66 888 2 333333333333333333333333333333333333333 5 9999999 1 9 2 4 2 3 555555 0 1 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 6666666666666666666 1 999999999999999999 66 888 66 3 0 99 666666666666666666666666666666666666666 66666666666 7 4 3
consensus : AATCTTTTTGC---GATA-CTTTTTATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
Reference ( family-1312 ) : AATCTTTTTGC---GATAACTTTTTATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C------AGATCTTA----GTTG--TAAGAT-AGTTTT-----G-TGAATCTGGCCCCTGGTTTGTCAT--G-A-A---TCATTCA---CAGCTGTTTCACAAAA--G--TGTTATATCT-TATGACAATCTTAAGATT------------GTCC----------GAAATCTTA-CGACATCCAGA---A-----------A-----------CTAAA---CTTAACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGA-GGAATA-----------TA------TATT---------CAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TTT-TAAAAAACGC---A-----AT--TC---CTTGTCAG--AGCAC-AAACGACTTTGA--C----------------------------------------TTA-----T-----CTGCAATC-TCC-ACCAGACCTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------C-----------TTT-T------TTCAAAA-----TT--TC---CTCGCCTG--AGAGC-AAATGT-TTAGA--CG-----A--------C----T-------------------TTA-----T-----CTGCTATC-TTC-TCTA
gi|11 : TCTA-------C-----------TTT-A------TTT---A-----TT--TTTCACTCGCCTG--AGCGCAAAATGG-TTAGA--CAT----A--------t
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaTATCTC-ATG-A-CTATTAAAGATAT------GTCT--TAAGAT--------------CAAA-----------ATTTGCCAT------A---CCTTT-----------TTTCACAAAA--C--TATCATAATT-TATGATAATCTTTAGATA------------ATGT----------GAAATTTTA-AGATGTCCAGAC--ACAAGTCATAAGT-----------CTAAA---CTTAGCCTG-GTGatataacggcattacccttttaatatctagtctatcatcctcccaggtttcactcttttttacata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-AATTTT-----G-TGAA-----------Aagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gATCTTA------CGACTAAGATCAG--------------A-----------ATTTATCATATG-A-T---TTAT-CA---TAGTTGTTTCACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATG------------GTTTAAGATGGTTTGAAATCTTA-AGACATCCAGAT--A-----------CATGTCTTAAATCTAAA---CTTAACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCAGTTT---TG----------TTT-TTTT---TTT---A-----TT--TC---CCCGCCTG--AGCGC-AAATGG-TTAGA--CAT----ATTAAACGGC----A-------------------TTA-----TTAATACT-CTATC-CCT-CCCAGGCCTCTTTTTCAT
gi|15 : TATCTT-ACG-A-CTA----AGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGAaa
gi|16 : tgtgtagacAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGAGGGA-----------------------------------------CAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------CT----------TTTAT------TTT---T-----TT--CC---CTCACCTT--AGAGC-AAAT
gi|18 : AAGCTTTTTGT---GA-AACTCTT---CTA-AAGGA-C------AAATTTTATCAAG-CG--TAAGGT-AGTTTT-----G-TGAA-----------ACT
gi|18 : TT-----GATAAA-----------ATTTGTCCT----------TTA---G---AAGA-GTTTCACAAAAAGC--TTTCATATCT-TATGATAATCTTAA-AGG------------GTCT----------tcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgc-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TTT-T------TTatg
gi|2 : AN-N-N------NGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGA---G-----------T-----------CT--A---C---ACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAAGGAACCG-----------TG------CCTA---------CA-GGACACAGATAATgggtttttttaaaaatattttttatt
gi|2 : tggcAGGACACAGATA--ATGGACACATTTCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C---------------T------TAA---A-----ATAATC---CTTTTCAG--AGCGT-AATTGA-TTAGACTCATTA--A--------CAGCAA-------------------TTACTTTTT-----CTGATATCTTCT-CTCAGACCTCTTTTTCATggacacatttcttcttccacagcacgtggtctttaatctcggacgaacccaatatatctttagagcatcccaacaaaagatcccattttgtaccaacttcactgcaagtgattgttgctctcttctccgttttatgctttgttctcttttattcgatgctagcttctctgctctcattggacatacacgtccacttaaaataatccttttcagagcgtaattgattagactcattaacagcaattactttttctgatatcttctctcagacctctttttcatg
gi|20 : tggcannnngatctgtctgaagatagaaatttgtaataaaattcgccatagccgtttcacaaaaactttcctatcatatgataatcttaagatagtttgaaatcttacgacatcagagtctacacatggcagcggcatgcaaatattttggtaagaaatagacaactcatccgaaggaaccgtgcctacTGTCA---G-A-AGATCTAT-CA---TAGCTGTTTTACAAAG--C--TGTCATATTT-TATGATAATCTTAAGATG------------GTTT----------GAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGATAACGAA---------TA------TCTT-------------GA-AGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGGGAACG-----------TA------TCTT-------------GA-AGAAACAATCCTTTAGACT
gi|26 : ttgagtagG-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : ccagatgcaggtcttaagtctcaAATCTTAAGATA------------GTCT----------GAAATCTTA-AGATATCCAGAT--A-----------
gi|3 : AA-----------ATTTGTCAT--CCA-A---TTGATCA---TGATTGTT-CACAAAA--C--TGTCATATCT-TATGATAAGCTTAA-ATA--------------------------------TTA-CGACA-----GT--A------------------------TAAA---CTTATCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGAGGGAATA-----------TA------TCTT---------T--GGA-----------CATTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTC-------TGTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TTT-T------TTTTCCA-----TT--TC---CTCCACAG--AGCAA-AAATGA-TTACA--CATTTAAA--------C----AGCATTGAAT----------TCA-----T-----CTGCCATC-CCC-CCTATATCTTTTTcatgtcttaag
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------TACATGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTAAATGGA---------CATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGTGC-AAATGG-TTAGA--CAT----A--------CCGGTATAAACGGCATGTACT----TTA-----T-----CTGCCATC-TCCTCCCAGGCCTCTTTTTCATcg
gi|5 : atcaaattttgagtagTCG---TAACTGTTTTACAAAA--C--TTTCATATCG-TATGATAATCTCA---TT------------ATCT----------GAA-TTTTA-CGACATC-AGAT--A------------------------------------CATA-TCTGA--AGTCT----AAACTT-------AGAT-----AGATT--GC---TTATCCGAAAGGA------------------------CT---------CA--------AACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TTT-T------TTT---GTAAATTT--TC---CTATCCAG--AGCGC-AAa
gi|6 : gattcgT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGAGGGAACGAATATCTTGAATA------TCTT---------CAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-ATATGG-TTAGA--CAT----A--------C----ATGTATTTACGGCATGTACTTTA-----T-----CTGCTATC-TCCTCCCAGTCCTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------CA------TCCT---------CAGG-ACAGAAACAATCCATTCGACTATATGGAG-ATATGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTCAGTATC-C-TTTAGAGCAACCCACAAAA-GATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTAGTGACCGAATATCTTGAATA------TCTT---------CAGGGTCAGAAACAACCCATTAGACTATAT-GAG--------CATTATGG------GTCGTCTTCCACGCCACGTGATC-TATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TTT-T------------------TT--TC---CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GC---AAT----TTTGATCTTTAAG-AAC------A-ATCTTA----GTCG--TAAGGT-AGTTTT-----G-TAAA-----------
gi|9 : --TAAGAT-TGTTCTTAAAGA-TCAA-----------AATTG-CAT--A-AGA---TTA--CA---TAGCTGTTTCACAAAA--C--TGTGATATCTGTATGATAATCTTAAGATACATGTAACATTAGTCT----------GAAATCTTAACGACATCCAGATCCA-----------G-----------ATACATGTCTTA-CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGAGGGAACG-----------TA------TCT----------CAGGGACAAAAGT--TCTCT--GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 222222 11 11 222222 222222 33333333333333333333333333 44444444444444444444 11111 22222222222222222222222222 77777777777777777777777777777777777 555555555555555555555555555555555555555 1111111 111111 222222222222222 111 11111111 5555555555555555555 222222222222222222 444444444444444444444444444444444444444 11111111111 1
lowQualScore : 444444 11 33 8 6 6 888888 000000 0 66 4 55555555555555555555555555 77777777777777777777 1 44444 1 4 1 00000000000000000000000000 4 3 00000000000000000000000000000000000 1 7 5 77 6666 77777 1 44 555 3 333333333333333333333333333333333333333 2 7777777 1 0 9 1 3 3 000000 4 0 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 0000000000000000000 3 000000000000000000 44 555 44 3 5 66 888888888888888888888888888888888888888 99999999999 5 1 0
lowQualScore : ...... .. .. . . . ...... ...... . .. . .......................... .................... . ..... . . . .......................... . . ................................... . . . .. .... ..... . .. ... . ....................................... . ....... . . . . . . ...... . . . ............... .... . . . . ..... .... ... ... ........ . ................... . .................. .. ... .. . . .. ....................................... ........... . . .
lowQualScore : 333333 00 66 0 7 7 333333 000000 1 11 4 99999999999999999999999999 77777777777777777777 3 00000 6 0 4 11111111111111111111111111 4 9 22222222222222222222222222222222222 4 3 0 99 1111 11111 0 66 888 2 333333333333333333333333333333333333333 5 9999999 1 9 2 4 2 3 555555 0 1 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 6666666666666666666 1 999999999999999999 66 888 66 3 0 99 666666666666666666666666666666666666666 66666666666 7 4 3
consensus : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
Reference ( family-1312 ) : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C------AGATCTTA----GTTG--TAAGAT-AGTTTT-----G-TGAATCTGGCCCCTGGTTTGTCAT--G-A-A---TCATTCA---CAGCTGTTTCACAAAA--G--TGTTATATCT-TATGACAATCTTAAGATT------------GTCC----------GAAATCTTA-CGACATCCAGA---A-----------A-----------CTAAA---CTTAACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGA-GGAATA-----------TA------TATT---------CAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TTT-TAAAAAACGC---A-----AT--TC---CTTGTCAG--AGCAC-AAACGACTTTGA--C----------------------------------------TTA-----T-----CTGCAATC-TCC-ACCAGACCTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------C-----------TTT-T------TTCAAAA-----TT--TC---CTCGCCTG--AGAGC-AAATGT-TTAGA--CG-----A--------C----T-------------------TTA-----T-----CTGCTATC-TTC-TCTA
gi|11 : TCTA-------C-----------TTT-A------TTT---A-----TT--TTTCACTCGCCTG--AGCGCAAAATGG-TTAGA--CAT----A--------t
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaT-ATCTC-ATG-A-CTATTAAAGATAT------GTCT--TAAGAT--------------CAAA-----------ATTTGCCAT------A---CCTTT-----------TTTCACAAAA--C--TATCATAATT-TATGATAATCTTTAGATA------------ATGT----------GAAATTTTA-AGATGTCCAGAC--ACAAGTCATAAGT-----------CTAAA---CTTAGCCTG-GTGatataacggcattacccttttaatatctagtctatcatcctcccaggtttcactcttttttacata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-AATTTT-----G-TGAA-----------Aagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gATCTTA------CGACTAAGATCAG--------------A-----------ATTTATCATATG-A-T---TTAT-CA---TAGTTGTTTCACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATG------------GTTTAAGATGGTTTGAAATCTTA-AGACATCCAGAT--A-----------CATGTCTTAAATCTAAA---CTTAACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCAGTTT---TG----------TTT-TTTT---TTT---A-----TT--TC---CCCGCCTG--AGCGC-AAATGG-TTAGA--CAT----ATTAAACGGC----A-------------------TTA-----TTAATACT-CTATC-CCT-CCCAGGCCTCTTTTTCAT
gi|15 : T-ATCTT-ACG-A-CTA----AGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGAaa
gi|16 : tgtgtagacAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGAGGGA-----------------------------------------CAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------CT----------TTTAT------TTT---T-----TT--CC---CTCACCTT--AGAGC-AAAT
gi|18 : AAGCTTTTTGT---GAAACTCTT----CTA-AAGGA-C------AAATTTTATCAAG-CG--TAAGGT-AGTTTT-----G-TGAA-----------ACT
gi|18 : TT-----GATAAA-----------ATTTGTCCT----------TTA---G---AAGA-GTTTCACAAAAAGC--TTTCATATCT-TATGATAATCTTAA-AGG------------GTCT----------tcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgc-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TTT-T------TTatg
gi|2 : AN-N-N------NGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGA---G-----------T-----------CT--A---C---ACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAAGGAACCG-----------TG------CCTA---------CA-GGACACAGATAATgggtttttttaaaaatattttttatt
gi|2 : tggcAGGACACAGATA--ATGGACACATTTCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C---------------T------TAA---A-----ATAATC---CTTTTCAG--AGCGT-AATTGA-TTAGACTCATTA--A--------CAGCAA-------------------TTACTTTTT-----CTGATATCTTCT-CTCAGACCTCTTTTTCATggacacatttcttcttccacagcacgtggtctttaatctcggacgaacccaatatatctttagagcatcccaacaaaagatcccattttgtaccaacttcactgcaagtgattgttgctctcttctccgttttatgctttgttctcttttattcgatgctagcttctctgctctcattggacatacacgtccacttaaaataatccttttcagagcgtaattgattagactcattaacagcaattactttttctgatatcttctctcagacctctttttcatg
gi|20 : tggcannnngatctgtctgaagatagaaatttgtaataaaattcgccatagccgtttcacaaaaactttcctatcatatgataatcttaagatagtttgaaatcttacgacatcagagtctacacatggcagcggcatgcaaatattttggtaagaaatagacaactcatccgaaggaaccgtgcctacTGTCA---G-A-AGATCTAT-CA---TAGCTGTTTTACAAAG--C--TGTCATATTT-TATGATAATCTTAAGATG------------GTTT----------GAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGATAACGAA---------TA------TCTT-------------GA-AGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGGGAACG-----------TA------TCTT-------------GA-AGAAACAATCCTTTAGACT
gi|26 : ttgagtagG-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : ccagatgcaggtcttaagtctcaAATCTTAAGATA------------GTCT----------GAAATCTTA-AGATATCCAGAT--A-----------
gi|3 : AA-----------ATTTGTCAT--CCA-A---TTGATCA---TGATTGTT-CACAAAA--C--TGTCATATCT-TATGATAAGCTTAA-ATA--------------------------------TTA-CGACA-----GT--A------------------------TAAA---CTTATCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGAGGGAATA-----------TA------TCTT---------T--GGA-----------CATTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTC-------TGTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TTT-T------TTTTCCA-----TT--TC---CTCCACAG--AGCAA-AAATGA-TTACA--CATTTAAA--------C----AGCATTGAAT----------TCA-----T-----CTGCCATC-CCC-CCTATATCTTTTTcatgtcttaag
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------TACATGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTAAATGGA---------CATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGTGC-AAATGG-TTAGA--CAT----A--------CCGGTATAAACGGCATGTACT----TTA-----T-----CTGCCATC-TCCTCCCAGGCCTCTTTTTCATcg
gi|5 : atcaaattttgagtagTCG---TAACTGTTTTACAAAA--C--TTTCATATCG-TATGATAATCTCA---TT------------ATCT----------GAA-TTTTA-CGACATC-AGAT--A------------------------------------CATA-TCTGA--AGTCT----AAACTT-------AGAT-----AGATT--GC---TTATCCGAAAGGA------------------------CT---------CA--------AACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TTT-T------TTT---GTAAATTT--TC---CTATCCAG--AGCGC-AAa
gi|6 : gattcgT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGAGGGAACGAATATCTTGAATA------TCTT---------CAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-ATATGG-TTAGA--CAT----A--------C----ATGTATTTACGGCATGTACTTTA-----T-----CTGCTATC-TCCTCCCAGTCCTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------CA------TCCT---------CAGG-ACAGAAACAATCCATTCGACTATATGGAG-ATATGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTCAGTATC-C-TTTAGAGCAACCCACAAAA-GATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTAGTGACCGAATATCTTGAATA------TCTT---------CAGGGTCAGAAACAACCCATTAGACTATAT-GAG--------CATTATGG------GTCGTCTTCCACGCCACGTGATC-TATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TTT-T------------------TT--TC---CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GC---AAT---TTTG-ATCTTTAAG-AAC------A-ATCTTA----GTCG--TAAGGT-AGTTTT-----G-TAAA-----------
gi|9 : --TAAGAT-TGTTCTTAAAGA-TCAA-----------AATTG-CAT--A-AGA---TTA--CA---TAGCTGTTTCACAAAA--C--TGTGATATCTGTATGATAATCTTAAGATACATGTAACATTAGTCT----------GAAATCTTAACGACATCCAGATCCA-----------G-----------ATACATGTCTTA-CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGAGGGAACG-----------TA------TCT----------CAGGGACAAAAGT--TCTCT--GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 222222 11 11 222222 222222 33333333333333333333333333 44444444444444444444 11111 22222222222222222222222222 77777777777777777777777777777777777 555555555555555555555555555555555555555 1111111 111111 222222222222222 111 11111111 5555555555555555555 222222222222222222 444444444444444444444444444444444444444 11111111111 1
lowQualScore : 444444 11 33 8 6 6 888888 000000 0 66 4 55555555555555555555555555 77777777777777777777 1 44444 1 4 1 00000000000000000000000000 4 3 00000000000000000000000000000000000 1 7 5 77 6666 77777 1 44 555 3 333333333333333333333333333333333333333 2 7777777 1 0 9 1 3 3 000000 4 0 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 0000000000000000000 3 000000000000000000 44 555 44 3 5 66 888888888888888888888888888888888888888 99999999999 5 1 0
lowQualScore : ...... .. .. . . . ...... ...... . .. . .......................... .................... . ..... . . . .......................... . . ................................... . . . .. .... ..... . .. ... . ....................................... . ....... . . . . . . ...... . . . ............... .... . . . . ..... .... ... ... ........ . ................... . .................. .. ... .. . . .. ....................................... ........... . . .
lowQualScore : 333333 00 66 0 7 7 333333 000000 1 11 4 99999999999999999999999999 77777777777777777777 3 00000 6 0 4 11111111111111111111111111 4 9 22222222222222222222222222222222222 4 3 0 99 1111 11111 0 66 888 2 333333333333333333333333333333333333333 5 9999999 1 9 2 4 2 3 555555 0 1 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 6666666666666666666 1 999999999999999999 66 888 66 3 0 99 666666666666666666666666666666666666666 66666666666 7 4 3
consensus : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
Reference ( family-1312 ) : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C------AGATCTTA----GTTG--TAAGAT-AGTTTT-----G-TGAATCTGGCCCCTGGTTTGTCAT--G-A-A---TCATTCA---CAGCTGTTTCACAAAA--G--TGTTATATCT-TATGACAATCTTAAGATT------------GTCC----------GAAATCTTA-CGACATCCAGA---A-----------A-----------CTAAA---CTTAACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGA-GGAATA-----------TA------TATT---------CAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TTT-TAAAAAACGC---A-----AT--TC---CTTGTCAG--AGCAC-AAACGACTTTGA--C----------------------------------------TTA-----T-----CTGCAATC-TCC-ACCAGACCTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------C-----------TTT-T------TTCAAAA-----TT--TC---CTCGCCTG--AGAGC-AAATGT-TTAGA--CG-----A--------C----T-------------------TTA-----T-----CTGCTATC-TTC-TCTA
gi|11 : TCTA-------C-----------TTT-A------TTT---A-----TT--TTTCACTCGCCTG--AGCGCAAAATGG-TTAGA--CAT----A--------t
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaT-ATCTC-ATG-A-CTATTAAAGATAT------GTCT--TAAGAT--------------CAAA-----------ATTTGCCAT------A---CCTTT-----------TTTCACAAAA--C--TATCATAATT-TATGATAATCTTTAGATA------------ATGT----------GAAATTTTA-AGATGTCCAGAC--ACAAGTCATAAGT-----------CTAAA---CTTAGCCTG-GTGatataacggcattacccttttaatatctagtctatcatcctcccaggtttcactcttttttacata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-AATTTT-----G-TGAA-----------Aagtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gATCTTA------CGACTAAGATCAG--------------A-----------ATTTATCATATG-A-T---TTAT-CA---TAGTTGTTTCACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATG------------GTTTAAGATGGTTTGAAATCTTA-AGACATCCAGAT--A-----------CATGTCTTAAATCTAAA---CTTAACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCAGTTT---TG----------TTT-TTTT---TTT---A-----TT--TC---CCCGCCTG--AGCGC-AAATGG-TTAGA--CAT----ATTAAACGGC----A-------------------TTA-----TTAATACT-CTATC-CCT-CCCAGGCCTCTTTTTCAT
gi|15 : T-ATCTT-ACG-A-CTA----AGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGAaa
gi|16 : tgtgtagacAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGAGGGA-----------------------------------------CAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------CT----------TTTAT------TTT---T-----TT--CC---CTCACCTT--AGAGC-AAAT
gi|18 : AAGCTTTTTGT---GAAACTCTT----CTA-AAGGA-C------AAATTTTATCAAG-CG--TAAGGT-AGTTTT-----G-TGAA-----------ACT
gi|18 : TT-----GATAAA-----------ATTTGTCCT----------TTA---G---AAGA-GTTTCACAAAAAGC--TTTCATATCT-TATGATAATCTTAA-AGG------------GTCT----------tcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgc-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TTT-T------TTatg
gi|2 : AN-N-N------NGATCT------GTCT--GAAGAT-AG-------------AA-----------ATTTGTAAT--A-A-A-----ATTCGCCATAGCCGTTTCACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGA---G-----------T-----------CT--A---C---ACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAAGGAACCG-----------TG------CCTA---------CA-GGACACAGATAATgggtttttttaaaaatattttttatt
gi|2 : tggcAGGACACAGATA--ATGGACACATTTCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C---------------T------TAA---A-----ATAATC---CTTTTCAG--AGCGT-AATTGA-TTAGACTCATTA--A--------CAGCAA-------------------TTACTTTTT-----CTGATATCTTCT-CTCAGACCTCTTTTTCATggacacatttcttcttccacagcacgtggtctttaatctcggacgaacccaatatatctttagagcatcccaacaaaagatcccattttgtaccaacttcactgcaagtgattgttgctctcttctccgttttatgctttgttctcttttattcgatgctagcttctctgctctcattggacatacacgtccacttaaaataatccttttcagagcgtaattgattagactcattaacagcaattactttttctgatatcttctctcagacctctttttcatg
gi|20 : tggcannnngatctgtctgaagatagaaatttgtaataaaattcgccatagccgtttcacaaaaactttcctatcatatgataatcttaagatagtttgaaatcttacgacatcagagtctacacatggcagcggcatgcaaatattttggtaagaaatagacaactcatccgaaggaaccgtgcctacTGTCA---G-A-AGATCTAT-CA---TAGCTGTTTTACAAAG--C--TGTCATATTT-TATGATAATCTTAAGATG------------GTTT----------GAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGATAACGAA---------TA------TCTT-------------GA-AGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGGGAACG-----------TA------TCTT-------------GA-AGAAACAATCCTTTAGACT
gi|26 : ttgagtagG-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : ccagatgcaggtcttaagtctcaAATCTTAAGATA------------GTCT----------GAAATCTTA-AGATATCCAGAT--A-----------
gi|3 : AA-----------ATTTGTCAT--CCA-A---TTGATCA---TGATTGTT-CACAAAA--C--TGTCATATCT-TATGATAAGCTTAA-ATA--------------------------------TTA-CGACA-----GT--A------------------------TAAA---CTTATCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGAGGGAATA-----------TA------TCTT---------T--GGA-----------CATTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTC-------TGTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TTT-T------TTTTCCA-----TT--TC---CTCCACAG--AGCAA-AAATGA-TTACA--CATTTAAA--------C----AGCATTGAAT----------TCA-----T-----CTGCCATC-CCC-CCTATATCTTTTTcatgtcttaag
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------TACATGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTAAATGGA---------CATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGTGC-AAATGG-TTAGA--CAT----A--------CCGGTATAAACGGCATGTACT----TTA-----T-----CTGCCATC-TCCTCCCAGGCCTCTTTTTCATcg
gi|5 : atcaaattttgagtagTCG---TAACTGTTTTACAAAA--C--TTTCATATCG-TATGATAATCTCA---TT------------ATCT----------GAA-TTTTA-CGACATC-AGAT--A------------------------------------CATA-TCTGA--AGTCT----AAACTT-------AGAT-----AGATT--GC---TTATCCGAAAGGA------------------------CT---------CA--------AACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TTT-T------TTT---GTAAATTT--TC---CTATCCAG--AGCGC-AAa
gi|6 : gattcgT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGAGGGAACGAATATCTTGAATA------TCTT---------CAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-ATATGG-TTAGA--CAT----A--------C----ATGTATTTACGGCATGTACTTTA-----T-----CTGCTATC-TCCTCCCAGTCCTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG-----------CA------TCCT---------CAGG-ACAGAAACAATCCATTCGACTATATGGAG-ATATGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTCAGTATC-C-TTTAGAGCAACCCACAAAA-GATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTAGTGACCGAATATCTTGAATA------TCTT---------CAGGGTCAGAAACAACCCATTAGACTATAT-GAG--------CATTATGG------GTCGTCTTCCACGCCACGTGATC-TATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TTT-T------------------TT--TC---CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GC---AAT---TTTG-ATCTTTAAG-AAC------A-ATCTTA----GTCG--TAAGGT-AGTTTT-----G-TAAA-----------
gi|9 : --TAAGAT-TGTTCTTAAAGA-TCAA-----------AATTG-CAT--A-AGA---TTA--CA---TAGCTGTTTCACAAAA--C--TGTGATATCTGTATGATAATCTTAAGATACATGTAACATTAGTCT----------GAAATCTTAACGACATCCAGATCCA-----------G-----------ATACATGTCTTA-CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGAGGGAACG-----------TA------TCT----------CAGGGACAAAAGT--TCTCT--GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
blockSeqs : TGT AC T T G A TATTAA TATCAA AC C TTCTTAAAGATCAA GAAGATCTATCA T AAA A G G CATGTAACATTAGTCT A C CACAAGTCATAAGTCTAAA T G T TA GCAA TGATA C TA CCG C TACATGTTTCTTGAATATCGTCAGGGTC T GGATATG A A A T A CATTTA A T TGATTGTTGCTCTCT CCCG A C T G TTTGT ATTA TTA TCA CACACCAT G GGTTTGTTTTTT A TTTGTAAAT AA TCA AC A . CT TACCGGTATAAACGGCATGTACT TTAATA T T
blockSeqs : GC . T . . . TA TA . . TTTTGTGAA ATGATTTATCA C AGC G . G GTTTAAGATGGTTT . C TACATGTCTTAAATCTAAA T A . . . . A . . A AATATCTTGAATATCTTCAGGTTC A GGACACA T C C T T . . . TGAACATTTT CCG C . . G . . TCA . AACAC T GTTTTTTTGT . TTCAAAA . . . . . . TACATGTATTTACGGCATGTACT CTTTTT . T
blockSeqs : G . . . . TA . . TTTTGTGAA AAAATTCGCCA C AC T . G ATGT . C TCCAGATACATGT T A . . . . A . . A AATATCTTGAATATCTTCAGGGTC T GAAGATG T G C G A . . . TGATTACTGC CCG A . . G . . TCA . . T GTTTGGTT . TTTTTTA . . . . . . TTTAAACAGCATTGAAT T . .
blockSeqs : . . . . . TA . . TTTTGTAAA AAAATTCGCCA T AC T . G GTTT . C TATAAA T T . . . . C . . A TGCCTACAGGAC T AAATACG T C C T A . . . TAATTATAGC TGA C . . T . . . . . C GTTTTG . TTTTCCA . . . . . . TATTAAACGGCA T . .
blockSeqs : . . . . . . CAAA CCAATTGATCA T C T . G GTCT . C GTCTA . . . . . . G . . A CATCCTCAGGAC T GATATG T G C T A . . . TGATTA CC A . . T . . . . . G CT . TTTA . . . . . . TTAACAGCAA T . .
blockSeqs : . . . AA AAGATTACA T C G . G GTTT . . TA . . . . . . G . . A TATCTCAGGGAC T GGATAA T A C T C . . . TGC CC T . . G . . . . . C CG . TTTT . . . . . . ACT T . .
blockSeqs : . . . AA ACCTTT T C G . G GTTT . . . . . A . . A AATATCTTGA A G T A C T A . . . GGC G A . . T . . . . . T CT . TAAA . . . . . .
blockSeqs : . . A TTAG . C T . . GTCT . . . . C . . C TATCTTTGGA T . T . C . . . . . . . . . . G . . . . . C GG . TTTA . . . .
blockSeqs : . C G . . ATCT . . A . . A TATCTTGA T . . . . . . . . . T . . . . . G C . TTTA . . . .
blockSeqs : . . . . C . . . CTCA . . . . G . . . . . T C . TTTA . . . .
blockSeqs : . . C . . . C . . . . . T G . . . . . .
blockSeqs : . . C . . . . . C .
blockSeqs : . . T
blockSeqCons : T* TA**** TTTTGAA******************* AAAATTTACCA********* TACAGTCATTAAA********************** ATCTTGATATCTTCAGGC********************* TTTA************** TATTAAACGGCATACT***********************
originalCons : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTT-----G-TGAA-----------ATTTGTCAT--G-A-A---TTATTCG---TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGAT--A-----------N-----------CTAAA---CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG-----------TA------TCTT---------CAGGGACAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CAT----A--------C----A-------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
finalCons : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C------AGATCTTA----GTCG--TAAGAT-AGTTTTGAA-------------------ATTTGTCATAAAATTTACCA---------TAGCTGTTTCACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGATACAGTCATTAAA----------------------CTTAACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACGATCTTGATATCTTCAGGC---------------------AGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-TTTTA--------------TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGA--CATATTAAACGGCATACT-----------------------TTA-----T-----CTGCTATC-TCC-CCCAGACCTCTTTTTCAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA
Alignments
lowQualScore : 222222 11 11 1111 111111111111 333333333333333333333 11111 11111 11111 22222222222222222222222222 77777777777777777777777777 11 9999999999999999999999999999999 33333333 111111 222222222222222 111 11111111 5555555555555555555 222222222222222222 6666666666666666666666666666666666 1111 1 1 111111
lowQualScore : 444444 11 33 8 6 6 3333 777777777777 4 4 777777777777777777777 44444 0 55 4 00000 4 44444 1 4 1 00000000000000000000000000 4 7 777 44444444444444444444444444 22 5 99 6666 77777 1 55 666 4 2222222222222222222222222222222 0 1 22222222 33 9 3 000000 4 0 4 333333333333333 5555 5 4 4 1 77777 6666 666 555 88888888 1 0000000000000000000 3 000000000000000000 44 555 44 3 5 6666666666666666666666666666666666 0000 5 66 0 5 222222
lowQualScore : ...... .. .. . . . .... ............ . . ..................... ..... . .. . ..... . ..... . . . .......................... . . ... .......................... .. . .. .... ..... . .. ... . ............................... . . ........ .. . . ...... . . . ............... .... . . . . ..... .... ... ... ........ . ................... . .................. .. ... .. . . .................................. .... . .. . . ......
lowQualScore : 333333 00 66 0 7 7 0000 111111111111 4 4 555555555555555555555 33333 1 55 3 00000 0 00000 6 0 4 11111111111111111111111111 4 5 000 88888888888888888888888888 33 7 22 5555 77777 0 00 444 3 6666666666666666666666666666666 2 5 11111111 66 2 3 555555 0 1 4 444444444444444 8888 3 4 0 4 77777 5555 222 444 88888888 0 6666666666666666666 1 999999999999999999 66 888 66 3 0 1111111111111111111111111111111111 6666 0 99 0 0 777777
consensus : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C--AGATCTTA----GTCG--TAAGAT-A-GTT-TTG--AA-----------AT-----TTGTCATAAA--ATTCGCCAT-----AGCTGTTT-CACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGA---TAC--------A-G-T-C-----T-----TAAACTTA-ACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG---A--------C-TGA-TATCTTCAGG--CAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGGCAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGACATA-------T-----TA-AACGGCA--T--A--CTT----TAT-CTG--CTATC-TCCTCCCAGGC----CTCTTTTTCAT
Reference ( family-1312 ) : AATCTTTTTGC---GATACTTTTT-ATCTT-AAG-A-C--AGATCTTA----GTCG--TAAGAT-A-GTT-TTG--AA-----------AT-----TTGTCATAAA--ATTTACCAT-----AGCTGTTT-CACAAAA--C--TGTCATATCT-TATGATAATCTTAAGATA------------GTCT----------GAAATCTTA-CGACATCCAGA---TAC--------A-G-T-C----AT-----TAAACTTA-ACATG-GCGGC--GGCAT----ATATTTTGGTAAGAAAT-----GGNCA--GC---TCATCCGGAGGGAACG---A---T----CTTGA-TATCTTCAGG--CAGAAACAATCCATTAGACTATATGGAGGATACGGACATTATGGACAAGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTAGAGCACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAGTGATTATTGC-----TCT-CCGTTTTNA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------AACACNTCCA-------CG----------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-AAATGG-TTAGACATA-------T-----TA-AACGGCA--T--A--CTT----TAT-CTG--CTATC-TCC-CCCAGAC----CTCTTTTTCAT
gi|1 : AATTTTTTTTCAATGATATTTTTTTATCTT-AAG-A-C--AGATCTTA----GTTG--TAAGAT-A-GTT-TTGTGAATCTGGCCCCTGGT-----TTGTCATGAATCATTCAC--------AGCTGTTT-CACAAAA--G--TGTTATATCT-TATGACAATCTTAAGATT------------GTCC----------GAAATCTTA-CGACATCCAGA---AAC--------------------------TAAACTTA-ACATT-GCGGC--GGCAT----ATATTTTGGTAAGTAAT-----GGACA--TC---TCATCCGGAGGAA-----------------T-A-TATATTCAGGGACAGAAACAATCCATAAGACTATATGGAGGATATGGACAATATTTGCAAGTGTCGTCTTCCATGGCACGTGATCTTATA------ATCTCTGGCGAGCTCAATATTCC-TTTAGAGCACACCACAAAAGGATCTCA-TACTCTACCAAATTCACTGCAAGTAATTATTGC-----TCT-CCGTTTTTC-TGC-TTTGTTCTTTATCATTCAATGCTAGC-----TTCC----TTTTTGCTC---TCA---CTGAACA--------TACACATTCA-------CG----------TTT-TAAAAAACGC---A-----AT--TC---CTTGTCAG--AGCAC-AAACGACTTTGAC------------------------------------T----TAT-CTG--CAATC-TCC-ACCAGAC----CTCTTTTTCAT
gi|10 : ATGGACA-GTGTCGTTTTCAACGGCACGTGATCTTAAA------ATCTCTGACGAACTCAATATTTC-TTTACAGCACCCCA-AAAAAGATCTCG-TGCTCTACCAATTTCACTGCAAGTGATTA------------------TTAA-TGT-TTCCTTCTCCATTACGCAATGCTAGC-----TTGT----TTTTTGCTC---TCA---CTGGACA--------AACACGTCCT-------C-----------TTT-T------TTCAAAA-----TT--TC---CTCGCCTG--AGAGC-AAATGT-TTAGACG------------------------------A--CTT----TAT-CTG--CTATC-TTC-TCTA
gi|11 : TCTA-------C-----------TTT-A------TTT---A-----TT--TTTCACTCGCCTG--AGCGCAAAATGG-TTAGACATA-------A-----TATAACGGCAT-T--ACCCTTTTAATAT-CTAGTCTATCATCCTCCCAGGTTTCACTCTTTTTTAt
gi|12 : cccaattaaaaagatccagcttctaggccacttcagctgcagatgctttcccatttatgagtctcacatctactcattttagagatccatctacatcttgacaaccttagaaT-ATCTC-ATG-A-C-----TATTA-----------AAGAT-ATGTC-TTA--AG-----------AT-----C------AAA--ATTTGCCAT-----ACCTTTTTTCACAAAA--C--TATCATAATT-TATGATAATCTTTAGATA------------ATGT----------GAAATTTTA-AGATGTCCAGA---CACA-------A-G-T-C----ATAAGTCTAAACTTA-GCCTG-GTGcata
gi|13 : aaaGATCTTA----GTCG--TAAGAT-A-ATT-TTG--agtggtcccctggctgacacggagcatatagcatggggcagggaaccagtctagt
gi|13 : gtttcaATCTTA------CGACTAAGATCA-G---------A-----------AT-----TTATCATATG--ATTTATCAT-----AGTTGTTT-CACAAAA--AAATGTCATATCT-TATGATAATCTTAAGATG------------GTTTAAGATGGTTTGAAATCTTA-AGACATCCAGA---TAC--------ATG-T-CTTAAATC----TAAACTTA-ACATA-GCGGC--GGGAT----ATATTTTGGTAAGAAAT-----GGCCagaatttatcatatgatttatcatagttgtttcacaaaaaaatgtcatatcttatgataatcttaagatggtttaagatggtttgaaatcttaagacatccagatacatgtcttaaatctaaacttaacatagcggcgggatatattttggtaagaaatggcc
gi|14 : gtttcacaaaattAGC-----TTCT----TTTTTGCTC---TCATCACTGGACA--------ACCACTTCCAGTTT---TG----------TTT-TTTT---TTT---A-----TT--TC---CCCGCCTG--AGCGC-AAATGG-TTAGACATA-------T-----TA-AACGGCA--T--T--ATT----AATACT---CTATC-CCT-CCCAGGC----CTCTTTTTCAT
gi|15 : T-ATCTT-ACG-A-CTAAGATCT------GTCT--GAAGAT-A-G--------AA-----------AT-----TTGTAATAAA--ATTCGCCAT-----AGCCGTTT-CACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAGAGTCTAC--------A-aa
gi|16 : tgAT----ATATTTTGGTGAGAAGT-----AGATATAGC---TCATCTGGAGGGA---------------------------------CAGACACAATTCTTTAGACTATAAAGAGGATATGGACAATATGGACAAGTTACGTCTTTCACAGTACGTAGTC------------TCTGTGACGAGCTCAACATgtttta
gi|17 : aTGTTCTCCATTACGCAATGCTACC-----TTATATTATTTTTGCTC---TCA---ATGGACAAACAC---AACACTTCAA-------CT----------TTTAT------TTT---T-----TT--CC---CTCACCTT--AGAGC-AAAT
gi|18 : AAGCTTTTTGT---GAAACTCTT----CTA-AAGGA-C--AAATTTTATCAAG-CG--TAAGGT-A-GTT-TTG--
gi|18 : agtttcaATAAA--ATTTGTCCTTTAGAAGA-GTTT-CACAAAAAGC--TTTCATATCT-TATGATAATCTTAA-AGG------------GTCT----------tcatatcttatgataatcttaaagggtctatg
gi|19 : agtttcacaaaactaccttacgcttg-TTTGTTCTCCATTACGCATTGCTAGA-----TTCT----TCTTTGCTCTTATCA---CTGGACA--------AACACCTCCA--------G----------TTT-T------TTatg
gi|2 : AN-N-N--NGATCT------GTCT--GAAGAT-A-G--------AA-----------AT-----TTGTAATAAA--ATTCGCCAT-----AGCCGTTT-CACAAAAA-C--TTTCCTATCA-TATGATAATCTTAAGATA------------GTTT----------GAAATCTTA-CGACAT-CAG---------------A-G-T-C-----------------TACACATG-GCAGC--GGCATGCAAATATTTTGGTAAGAAAT-----AGACA--AC---TCATCCGAAGGAACCG------------------TGCCTACAGG-------ACA------CAGA-TA-ATGG-----AC--ACATT-----------TCTTCTTCCACAGCACGTGGTCTT-TA------ATCTCGGACGAACCCAATATATC-TTTAGAGCATCCCAACAAAAGATCCCA-TTTTGTACCAACTTCACTGCAAGTGATTGTTGCTCTCTTCT-CCGTTTT-A-TGC-TTTGTTCTCTTTTATTCGATGCTAGC-----TTC-------TCTGCTC---TCA---TTGGACA--------TACACGTCCA-------C---------------T------TAA---A-----ATAATC---CTTTTCAG--AGCGT-AATTGA-TTAGACTCA-------T-----T--AACAGCAATT--A--CTT----TTT-CTG--ATATCTTCT-CTCAGAC----CTCTTTTTCATgggtttttttaaaaatattttttatt
gi|20 : tggcTGTCAGAAG--ATCTATCAT-----AGCTGTTT-TACAAAG--C--TGTCATATTT-TATGATAATCTTAAGATG------------GTTT----------GAAATCTTg
gi|21 : taaaaatcaggggccaaaaaaT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGATAACG---A------------A-TATCTT---G--AAGAAACAATCCATAAGACTATATGG
gi|22 : atcaaattttgagtagCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---TTAGACA--------AACACCTCCAGTTTTTTTGT---------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-Agc
gi|23 : T----ATATTTTGGTAAGAATT-----GGGCA--GC---TCATACGGAGGGAACGT--A---T----CTTGA--------------AGAAACAATCCTTTAGACT
gi|26 : ttgagtagCCAGA---TGC--------A-GGT-C-----T-----TAAGTCT---CA-G-GCGGC--GGCGT----ATATGTTGGTAAGAAAT-----AGGC
gi|27 : AATCTTAAGATA------------GTCT----------GAAATCTTA-AGATATCCAGA---TAC--------ATG-T-C-----T-----TAA
gi|3 : --AA-----------AT-----TTGTCATCCA--ATTGATCAT-----GATTGTT--CACAAAA--C--TGTCATATCT-TATGATAAGCTTAA-ATA--------------------------------TTA-CGACA-----G---TA---------------------------TAAACTTA-TCATG-GCGAC--GGTAA----ATATTTTCGAGAGAAAT-----GGACA--TT---TCATCGGGAGGGAAT-----------------A-TATCTTTGGA--CA-----------TTAGACCATATGGAGAAGATGGACATTATGGACAGGTGTCGTCTTCT-------GTAATCGTTTA------ATTTTCGACGACCTTAGTATTCC-TTGAAAATACCCTACAAAAAGATATCG-TGATCTACCAACGCCACTGCTATTGAACATTTT-----TCT-CC-TTTTCACTGC-GGTGTTCTCTATTAGTCAATGCTAGA-----TTAT----TTTTTGCTC---TCA---TAGTAAA--------TACACTTTCA-------CG----------TTT-T------TTTTCCA-----TT--TC---CTCCACAG--AGCAA-AAATGA-TTACACAT--------T-----TA-AACAGCA--TTGA--ATT----CAT-CTG--CCATC-CCC-CCTATA------TCTTTTTg
gi|31 : gataaatagacatgtctcaaaaccA------ATCTCTGACGAGCTCAATATTTC-TTTat
gi|4 : T----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACGTACA---TGTTTCTTGAATATCGTCAGGGTCAGAAACAATACATTAGACTAAATGGA---------CATTATGAGCA-GTGCCGTCTTCCACGGCACGTGATCTTATACATTTAATCTCTGACGAACTCAATATTTC-TTTCGAACACCCCACAAAAAGATCTCA-TGCTCTACCAACTTCACTGCAAG-------TGC-----TCT-CCGTTTTAA-TGC-TTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGCTCTCATCA---CTAGACA--------AACACCTCCAGTT----TGGTT-------TTT-T------TTT---A-----TT--TC---CTCGCCTG--AGTGC-AAATGG-TTAGACATA-------CCGGTATA-AACGGCATGT--A--CTT----TAT-CTG--CCATC-TCCTCCCAGGC----CTCTTTTTCATcg
gi|5 : atcaaattttgagtag--ATTCGTCGT-----AACTGTTT-TACAAAA--C--TTTCATATCG-TATGATAATCTC---ATT------------ATCT----------G-AATTTTA-CGACAT-CAGA---TACATATCTGAA-G-T-C-----------TAAACTTA-a
gi|5 : gAAACAACTCATTAGAAAATATGATAAATACGGACATTATGGATACTTTTTGTCTTCCACGGCATATGGTCTCATA------ATATCTGACGAACTTTA-ATTTCATTAAGAGAACCCCATCAAAAGAGCTCA-CGCTCTACCAATTTCACTACAAGTGATTACTGC-----TCT-CC-TTGTCA-TGC-TTTGTTTTCTATCATTCAAAGTTAGCTTTGTTTCT----GTTTTGCTC---TCA---CTGAACGCACACCATAACGCGTCCA-------CT----------TTT-T------TTT---GTAAATTT--TC---CTATCCAG--AGCGC-AAgatagattgcttatccgaaaggactcaaacaactcattagaaaatatgataaatacggacattatggatactttttgtcttccacggcatatggtctcataatatctgacgaactttaatttcattaagagaaccccatcaaaagagctcacgctctaccaatttcactacaagtgattactgctctccttgtcatgctttgttttctatcattcaaagttagctttgtttctgttttgctctcactgaacgcacaccataacgcgtccacttttttttgtaaattttcctatccagagcgcaac
gi|6 : gattcgtcgtaactgttttacaaaactttcatatcgtatgataatctcattatctgaattttacgacatcagatacatatctgaagtctaaacttagatagattgcttatccgaaaggactcT----ATATTTTGATAAGAAAT-----GGCCG--GC---TCATCCAGAGGGAACG---AATAT----CTTGAATATCTTCAGGTTCAGAAGCAATCCATAAGACTATATGGG---------CATGATGGG-AGGTGTCGTCTTCCACGGCACGTGATCTTATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAAGATCCCA-TGCTCTACCAACTTCACTGCAA----------------------GTTTCAA-TGC-TTTGTTCTCCATTACGCAATGCTTGC-----TTCT----TTTTTGATC---TCG---CTGGACA--------AACACTTCCA-------GGTTTGTTTTTTTTT-T------TTT---A-----TT--TC---CTCGCCTG--AGCGC-ATATGG-TTAGACATACATGTATT-----T---ACGGCATGT--A--CTT----TAT-CTG--CTATC-TCCTCCCAGTC----CTCTTTTTCATc
gi|7 : atcaaattttgagtagAT----ATATTTTGGTAAGAAAT-----GGCCA--GC---TCATCCGGAGGGAACG------------------CATCCTCAGGA-CAGAAACAATCCATTCGACTATATGGAG-ATATGTACATTATGGGCAAGTGTCGTCTTC------ACGTCATCTTCTA------ATCTCTGACGAGCTCAGTATC-C-TTTAGAGCAACCCACAAAA-GATCTCA-TGCCCTACCAACTTCACTGCA-GTAATTATAGC-----TTT-TGAATTTTA-TTC-TTTGTTCTCTATTATTTAATGCTAGC-----TTCT----TTTTTGCTC---TCA---CTGGACA--------TACA
gi|8 : T----ATATTTTGAATAGAAAT-----GGCCA--GT---TCATCCTTAGTGACCG---AATAT----CTTGAATATCTTCAGGGTCAGAAACAACCCATTAGACTATATG-AG--------CATTATGG------GTCGTCTTCCACGCCACGTGATCT-ATA------ATCTCTGACGAGCTCAATATTTC-TTTCGAGCACCCCACAAAAATATCTCATTGCTCTACCAACTTCACTGCAAG-G------GC-----TCTCCCGTTTTAA-TGCTTTTGTTCTCCATTACGCAATGCTAGC-----TTCT----TTTTTGATC---TCA---CTGGACA--------AA-ACTT-CA-------GG----------TTT-T------------------TT--TC---CTCGCCTGACAGCGC-AAATgtgcatgcgaaaatgatatgatatatttatgcatcgactgaatttatcctgctcttccagaactactagtattttact
gi|9 : caaattttgagtagAATCTTAT-GC---AAT---TTTG-ATCTTTAAG-AAC--A-ATCTTA----GTCG--TAAGGT-A-GTT-TTGT-AA-----------A
gi|9 : --TAAGAT-T-GTTCTTA--AAG----------ATCAAAATTG-CATAAG--ATT-AC-AT-----AGCTGTTT-CACAAAA--C--TGTGATATCTGTATGATAATCTTAAGATACATGTAACATTAGTCT----------GAAATCTTAACGACATCCAGA---TCC--------A-GATAC----ATG----T---CTTA--CATGTACGTCTAAGCAT----AT--TTTGGTAAGAAATTGATAGGTCA--GCCCGTCAGCCGGAGGGAACG------------------TATCT-CAGG--GACAAA-AGTTCTCT-GACTGTATGGAGGATA-AGACATTATGGACAAGCTTCGTCTTCCACGacatagctgtttcacaaaactgtgatatctgtatgataatcttaagatacatgtaacattagtctgaaatcttaacgacatccagatccagatacatgtcttacatgtacgtctaagcatattttggtaagaaattgataggtcagcccgtcagccggagggaacgtatctcagggacaaaagttctctgactgtatggaggataagacattatggacaagcttcgtcttccacgtgtattttctat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AACCTGGTCCCCTGAGTCCCTGACTTGCGACGCGGAGCACATAGCATGGGACAGGGAACCAGGCT
Unaligned ( gi|25 ): CTGGTTCCCTGGCTCCTTGAACGCGGAGCTCAGAGCATGGGACAGGGATCCAGGCTA
Unaligned ( gi|28 ): GGTCCCCTGAGCGGAGCATATATCATGGGACAGGGAACCAGGCTA
Unaligned ( gi|29 ): GCCTTGTGACGCGGAGCATAAACCATGGGCCAGGGAACCAG
Unaligned ( gi|30 ): TTGCGGCGCGGAGTTAGAGCATGGGACATGGAACCAGGCTA