lowQualScore : 1111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 1 7777777777777777777777777 4444444 4 1 555555 44 4 1 1 22 555555555555555 44 22 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222 111 1 6666666 1 2 22 2 66666666666666 1 1 444444 222 2 2 1 333 2 2 5555555555 1 33 2 22 11111 66666666666666666666666666 666666666666666666666666666 11 333333 222 666666666 3333 22222222 111 5555555555 111 444444444444444444444 1 22 1111 22 333 33333 1 22 11 555555 222222 3333333333 1111 1 1 9999999999999999999999999999999999999999999 11 1 4 22 11111 2 333 1 33333333333 111 22222 3333 22222 444444 2 5555 1 22 1 44444444 2 66666 4444 4 555555555555555 4 666666666 1 4 4 55 5555555 4 222 55555 1 1 4444 11 333333333 7777777777777777777777 3333 22 111 333333333 22222222 2222222 11111 333333333 111 6666666666666 111 5555555555555555555555 111 7777777777 2 22
lowQualScore : 77 5 2 8888888888888888888888888 3 0000000 6 0 3 000000 33 2 0 3 5 3 5 77 333333333333333 22 77 8 5555 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 88888888 222 5 1111111 4 5 0 55 0 44444444444444 5 5 333333 222 0 7 4 5 000 0 3 0 5555555555 3 00 8 1 6 99 6 5 5 11 11111 66666666666666666666666666 66 5 3 555555555555555555555555555 5 22 0 222222 5 222 2 77 3 77 333333333 0000 99 77777777 6 6 6 666 8 2222222222 111 888888888888888888888 0 99 0000 5 888 3 33 5 9 777 55555 99 5 0 00 99 0 5 888888 3 222222 6666666666 4444 0 0 9999999999999999999999999999999999999999999 88 3 0 00 66666 6 555 3 55555555555 2 666 6 99999 7777 55 3 77777 3 000000 4 4 0 0000 5 77 5 77777777 7 00000 5555 888 0 777777777777777 0 111111111 5 0 0 55 6666666 0 444 6 11111 3 1 0 1 3333 77 333333333 5 8 9999 8 8888888888888888888888 66 66 8 4 9999 5 888 88 66 000 77 333333333 77 00000000 6 3 4444444 1 66666 8 999999999 111 2222222222222 111 77 9 5 5 6666666666666666666666 5 5 5 444 8888 4444444444 8 8 11
lowQualScore : .. . . ......................... . ....... . . . ...... .. . . . . . . .. ............... .. .. . .... . ....................................................................................................................................................... ........ ... . ....... . . . .. . .............. . . ...... ... . . . . ... . . . .......... . .. . . . .. . . . .. ..... .......................... .. . . ........................... . .. . ...... . ... . .. . .. ......... .... .. ........ . . . ... . .......... ... ..................... . .. .... . ... . .. . . ... ..... .. . . .. .. . . ...... . ...... .......... .... . . ........................................... .. . . .. ..... . ... . ........... . ... . ..... .... .. . ..... . ...... . . . .... . .. . ........ . ..... .... ... . ............... . ......... . . . .. ....... . ... . ..... . . . . .... .. ......... . . .... . ...................... .. .. . . .... . ... .. .. ... .. ......... .. ........ . . ....... . ..... . ......... ... ............. ... .. . . . ...................... . . . ... .... .......... . . ..
lowQualScore : 55 0 5 5555555555555555555555555 0 0000000 7 0 3 777777 00 5 0 0 5 0 5 55 555555555555555 55 55 5 5555 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00000000 000 5 5555555 0 5 0 55 0 00000000000000 5 0 000000 000 0 5 0 0 000 0 0 0 5555555555 3 00 0 0 7 22 7 7 7 00 66666 88888888888888888888888888 99 0 2 444444444444444444444444444 0 66 1 555555 0 111 5 99 4 99 444444444 5555 22 00000000 7 7 7 444 0 2222222222 777 777777777777777777777 5 99 6666 0 888 4 22 0 4 000 44444 22 7 0 66 11 4 0 000000 8 222222 6666666666 8888 0 0 0000000000000000000000000000000000000000000 33 3 0 77 33333 7 000 3 55555555555 5 555 0 55555 5555 55 0 55555 0 000000 0 0 0 5555 0 55 0 00000000 5 00000 0000 000 0 000000000000000 0 000000000 0 0 0 00 0000000 0 000 0 00000 3 2 0 0 3333 11 777777777 0 9 4444 9 0000000000000000000000 11 11 9 4 2222 0 888 99 99 000 99 333333333 99 88888888 7 2 2222222 0 22222 0 888888888 777 3333333333333 777 99 6 7 7 7777777777777777777777 7 7 7 999 0000 6666666666 2 0 77
consensus : GAGATTTTACAGTGCCATTTNCATTTCTAGTTAATTTACTATTTGTTATTNGCTTTG-TAT--TGGTACCAGTTGTAC-CCGATTC---TTGCACCATTTGTT-GCTNTCAATATTTACATCGTGANTTTGACATGTTGNTTTCTTGGCAAATTTGTGAATTCCG-GGCACCGCNTTTGTGCCT-CCACTTTTGATTTAGTNNGNAANAAATCTGT-GAA--TTTGACCATGTTGCTTTCTNGGCATTTGTGAACTTGGGGCACCATTTTGTGCCTCTANTTGATTTANNNGAACAACATATGTNNNTCCGACATNTTGGTT-TNAGTTGGAAAAACGTTTNNGAATTTAGGGCACCATTTGTTGNNTCCACTTGGTNNNTTGTGANAAATTCTTNGGGGCACCATTTTGTGCCTGAGCCGCTTNGATTTGTTGGAANAATTTACTTGGCTGCAAAATTGCCGCCCCCATTTTGGAAAAATTTCACTGGGCTGGCAAAANTTGCCGCCCCATTCAATGTGTGGGCGGATGGGNCAATCGACGTTGTACTATTTGCCNCCATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAG--GGGG-CAC-TG-TTT-TTT--C--CAGGTCCCCT---GGG-CCAAGA-T-----G-TA-T--TTCTA-TGCTT----TA----ATA-TTCATA-------TGCTGCCA-ATTTTTGTTTCA--T--TCGGCG-CAT-ACACAAAA--ATTNATTTGTT--G--TA----ATATAT-T--AAA--TGGCCAT-GAACAAACACGC-CAAA-CA-TAATA-TGAC-TC-GT------TGTTTTT---CTTG--------CA---CAT-T---GGGCATATTTGATAACC--TAG----TA-G---CCAATA-GGT-GGTTTCTGTTTTTCTTT--NTCTGTCGTT--GTGG--AGGT-G-AAATTTTGCTCGCAA-AATAAT-AG--GGTTTATCCAC-TA--TGG-------AT-AAACCTGG-T--ATTTAGCG-CA-AATTAA---A--TT-----TATTT-ATA-GC-AA-AT--TA----GG-TTAGGAA--AATT-ACG-TCGGGT-TTCGGACNCTTCGCTGT-G-TTGCGCAT-CCGCGCTCATTGTTTACNAGATCAGTCGTCCCTTTTGCACCTTNTCCGNNANTTCGCAGGTGGNGCAGACGTTACAGNANTTTCGATACCACTCCCTCCCTCCCCTTTGCATTTAAGTTTGCTAGGCCTTGGTTGGCTTTGGGGCGCTTTTCGTTTTANCCTTTCAGCGT-CATGG-TCAT-TTGG-TGTGGTGGA-CATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TGTTTTTTC---C----AGGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT------AAT--TT-A-------TAT--GC--TGCC-A-ATTTT-TGTTTC-A---TCGGCG-CAT--ACAAAAATTCATT---TGTT--GA-----TATA--TAT-T--AA--ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTC-GT------TGTTTTT---CT-------TGC-ATAT---TGGGCATATTTG--ATAACC-T-AGTAGC---C-AAT------NGG-TG-G-TTTCTGTT-TTC-TTTGTT-T--GTCGTTGTG--GA--GGTGGAA-TTTGTC-GCCAAAATA
Reference ( gi|1 ) : GAGATTT--CAGTGCCATTTGCA---CT--------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA--G-ATT-GTGCCTTCCACTT--GATTTTATCGGGAAAA---TTGTTGAAATTTTGAC-ATGT-------TTG---TTT-----TTTGG-----CATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC-TG--GGTTATA--TTGGAAAA-CATTTTT-AATTT-GGACA-----TGTTGATTTT-CTTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTTGAATTTG-TGGA-CAAGTT-C---GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATTGCCGCCCCATTCAATGTGT-G-CGGAT-GGTCAATCGACATTGT-CTA-T-GCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAG--GGGG-CAC-TG-TTTCTTT--C--CAGGTCCCCTTGCGAG-CCAAGA-T-----G-T--T--TTCTA-TGCTT----TAA---ATA-TTCAT--------TGCTGCCA-ATTTTTGTTTCA--T--TCGGCG-CAT-ACACAAAA--ATTAATTTGTT--GAATA----ATATAT-T-CAAA--TGGCCAT-GGACAAACACGC-CAAA-CA-TAATG-TGAC-TC-AT------TGCTTTT---CTTG--------CA---CA--T---GGGCATATTTGATTACC-ATAG----TA-G---CCAATAGGGT-GGTTTCTGTTTTTCTTTAAATTTGTC-TT--GTGG--AGGT-G-AA--TTTGCTCGCAA-AATAAT-AGC-GGTTTATCCAC-TA--TGG-------ATAAAACCTGG-T--ATTTAGCG-CA-AATTAACCGA--TT-----TATTTAATAAGCTAAAAT--TA----GG-TTAGGAA--AATT-ACGTTCGGGT-TTCGAACCTTTCA-TGT-GTTTGTGCAT-TTGCG--CA-TGT---CCAGATCAGTTCTTCC-TT--CACTTTG---GCTAATTCA-AAG-AGAGCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA-G---TGGTTCGCTTT--TGCGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTC----AGGGGGCACTTGTTTTTT----C----AGGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--TA-AAATAATC-A-------TAT--GC--TGCC-A-ATTTTCTGTTTC-A---TCGGCGCCAT--ACAAAAATTCATT---TGTT--GA-----TA-A--TAT-T--AA--ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTC-AT------TGTTTTT---CTC------TGC-A-AT---TGGGCATATTTG--ATTACC-T-AGTAG----C-AAT------TAG-TGTG-TTTCTGTT-TTC-TTAATT-T--GTCGT------GG--GGTGAAACTTTGTT-GCCAAAATA
gi|3 : GAGATTTTACAGTGCCATTTCCA---CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTT
gi|2 : atttgtgct--CAGTGC-ATTTGCATTTCT--------------------TTGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATTT----TGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCA--GCATTTGTGCCT--CACTTTTGATTT-ATCTGGAAAAAATCTGT-GA---TTTGACCATGT-------TGA---TTT-----CTTGG-----CATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC-TT--GGTT-TAAGTTGGAAAAACATTTTG-AATT---GACA-----TGTTGAATTT-CTTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTGATTTG-TGGAACAA-TT-C---G-TGCAAA-TTGCTGCCCC-ATT--GGAAAAATT-CACTGGGCTGGCAAAATTTGCCGCCC-ATTCAATGTGT-GGCGGAT-GGGTAATCGACATTGTACTA-TTGCCGCCATTTGGCAATAATTTTG-CATTAGTTTGCTGTCTCCAG--GGGG-CAC-T--TCGTTTT--T--CAGGTCCCT----GAG-C-AAGA-TAG---G-TA-T--TTCTA-TGCTT----TAA---ATAATTCATA-------TGCTGCCA-ATTTTTGTTTCA-----TCGGCG-CAT---ACAAAA--ATTAATTTGTT--G--------ATATATAT-CAAA--TGGCCATCGCACAAACACGC-CATA-CA-TAATGTTGAC-TC-A-------TGCTTTT---CTTG--------CA---CATTT---GGGC-TATTTGATTACC--TAG----TA-G---CCCATA-GGT-GGTTTCTG-TTTTCTTTTAATTTGTCGTT--CTGG--AGGT-G-AAATTCTG-TCGCAA-AATAAT-AG--GTTTCATCCACTTA--TGG--------T-AAACCTGG-T--TTTAAGCG-CA-AATTAACCGAATTT-----TATTT-ATACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT-G-TTGTGCAT-CTGCG--CA-TGT---CCAGATCAG-TCTCCCTTT--CATCTTT---GCGAATTCA-AGA-GGCGCAGACG-TACAAAAATTT-AATACC----CCT-CCTCCCC--TGCATTTAAGTTTG-TAGG---TGGTT-GCTTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGG-TCAT-TTGG-TGTGGTGGA-CATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATGTTTTTTC---C----AGGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--TT-AAATAATT-A-------TAT--GC--TGCCTC-ATTT--TGTTTCTA---TCGGCG-CAT--AC--AAATTCATT---TGTT--GA-----TC-A--TATAT--TA--ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTC-A-------TGTTTTT---CT-------TGC-ACAT---TGGGCATATTTGACATTACC-T-AGTAGC---C-AAT------AGG-TG-G-TTTCTGTT-TTC-TTAATTGG--GTCGT------GGATGGTGGAAATTTGCT-ggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|3 : TTGGT-T--TAGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCACCA-TTT-GTGCCT-CTACTT--GATTTAGTGGATAACA---CTGT-GAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCATTTGT-GCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTTG-ATTTGTTGGA-AAATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATTGCCGCCCCATTCAATGTGTGG-CGGATGGGTCAATCGACGTTGT-CTATT-GCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAG--GGGG-CAC-TG-TTT-TTT--C--CAGGTCCCCT---GGG-CCAAGA-TG----G-TA-T--TTCTA-TGC-T----TA------A-TTCATA-------TGCTGCCA-A---TTGTTTCA-----TCGGCG-CAT---ACAAAA--ATTCATTTGTT--G-AT-----ATATAT-T--AAA--TGGCCAT-GA-----------CAAA-CA-TAA---TGAC-TC-G-------TGTTTTT---CTTG--------GA---TAT-T---GGGCATATTTGATAACCTATAGCTAATA-G---CCAATA-GAT-GGTTTCTG-TTTTCTTT--GTCTGTCGTT--GTGG--AGGT-GAAA--TTTG-TCGCAA-
gi|8 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgaTGGCA-TAACTTTG-CAT-AGTTTGCTCTC-TCCA--GGGG-CAC-TG-TT--TTT--C--CAGGTCCCC---CGGG-CCAAGATT-----G-CA-T--TTCTA-TGC-T----TA------A-TTGATA-------TGCTGCCA-A---TTGTTTGA-----TCAGTG-CAT---ACAGAA--ATTAATTTGCT--G--T-----ACATAT-T-
gi|5 : acAT-AGTTAGCTGTCTCCAGTGGAGGTCACGTG-TTTTTTT--GTGCAGGTCCCGCTG-GGT-CAAAGA-TCAGAGG-TACT--TGCAG-TGCTT-----AATTTATA-TTAGC--------TG-TGCCA-ATATT-GTTTCAGGT--TCGGCGGCAT-TGACAAAATCATTG-TCTGTCTAGAGTAGTTAATTTAT-G-TAAACATGGCCAT-GAGCACGCACGCACAAAGCAATGACA-TGGCCTCGATGTGCTATGCTTTTTGACTTG--------GAATTTA--T---GGGCATATTTTGTAACC-TCAG----TA-GGCATCAATA-GGT--GTTTCTGTTCTgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : catgcttatga-AGTTTGCTGTCTCCAG--GGGG-CAC-TG-TTT-TTT--C--CAGGTCCCCT---GGG-CCAAGA-T-----GGTA-T--TTCTA-TGCTT----------A-A-TTTATA-------TGCTGCCA-ATTTTTGTTTCA-----TCGGCG---T-ATACAAAA--ATTCATTTGTT--G-AT-----ATATAT-TAAAAA--TGGCAAT--GACAAACACGC-C----CA-TActattttgatctacgttgc
gi|13 : -CCAG--TGGG-TAC-TGGTTTCTTTTGC--AAGGTC---TT-CGGA-TCATGA-T-----G-G--TACTTATA-TGCTT----CA--------TTTATA-------TGCTGCCA-ATTTTTtagact
gi|11 : tctAC-TG-TTT--TT--C--CAGGTTTCCT---GAGATGAAGA-TA----G-TA-T--TTCTATTGCTTAATATAT---ATA-TTCATTTGTCTTATGCTGCCACA--------TCA--TCATCGGCA-CATAACACAAt
gi|6 : gctCCCCT---GGG-CCAAGA-T-----GGTA-T--TTCTA-TGCTT----GAA---ATAATTTATA-------TGCTGCCA-ATTTTTGTTTCA--T---CGGCG-CAT-ACA--AAA--ATTAATTTGTT--GA-TA-----TATAT-T--AAA--TGGCCAT-GG-CAAACACGC-CAAA-CA-TAATA-TGAC-TC-G-------TGTTTTT---CTTG--------CA---CAT-T---GGGCATATTTGATTACC--TAG----TA-G---CCAATA-GGT-GGTTTCTG-TTTTCTT--AATTTGTCGTT--GTGG--AGGT-GAAA--TTTG-TCGCAA-AATAActtt
gi|10 : TCA--T---CGGCG-CAT-ACA--AAA--ATTCATGTGTT--G--TA-----TATAT------A--TGGCCAT-GA-----------CAAA-CA-TAATA-TGAC-AC-GT-------GTTTTT---CTTGGATATTGCCA---TA--TT--GGGCATATTTGATAACC--TGG----TA-G---CCAAT-GGGC-GGTTTCTGTTTTCTTTT--GTCTGTC-
gi|8 : TTT---GCTG--------TA---CA--TATTGGGCATATTTGATAACC--TAG----TA-G---CCAATAGG-T-GGTTTCTGTTCTCTTTTG--TCTGTCGTC--GTGG--AGGTGG-AA--TTTG-TCGCAA-AATg
gi|4 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaATAGTTGATAACC--TA-----TACG---CCTATCCGGTAGGTATCAGTTT--CTTTTGTTCTGTC-GTCGGTGGGAAGGT-G-AAATTTTTTTCGCAATCATAATTAG--GATTTACGCAC--A--TGGGGTTCAAATTAAACGTGG-TTTATTTAGCG-CA-AGCTAA---A--TTATGTATATTTGTTAGGC-AACATAGTAAGGTGG-TAACGAAACAATT-ACG-CCGGGTCTTCGGACTCTTCGCTGTAGGTGGTGCATCTCGCGCTCATTGTTTACAAGATCAGTCGTCCC-TTTGCACTTTGTCCGATACTTCGCAAGTAGAGCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTA-GCCTTGGTTGGCTTT-----GCTTTTCG-TTTATC
gi|14 : atATAACC-ATAG----TA-G---CC-ATCAGGT-GAATTCTATTATTTTTTGTTTTAGTCGTTCAGTGG--GGGT-G-GAATTTTGTTCGC-A-AATAAatcgtcattcctcatgacttctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|2 : GGT-T-AA--TTTGCGCTTAA-AACCA------GGTTTA-CCA--TAAGTGG-------ATGAAACCTAT-T--ATTTTGCGACAGAATTcgt
gi|12 : cagtgcatttgcatttctttggctttgtatgggtacagttgtacgctgattttgcaccatttattgctctcaatatttacattgtgactttgcatgttgatttctggcaaatttgtgaatttcaggcagcatttgtgcctcacttttgatttatctggaaaaaatctgtgatttgaccatgttgatttcttggcattttgtgaatttaggcgcaacatatgttcctccacttggtttaagttggaaaaacattttgaattgacatgttgaatttcttggtaatttgtgatttagggacccattttatgcctgagccactttgatttgtggaacaattcgtgcaaattgctgccccattggaaaaattcactgggctggcaaaatttgccgcccattcaatgtgtggcggatgggtaatcgacattgtactattgccgccatttggcaataattttgcattagtttgctgtctccagggggcacttcgtttttcaggtccctgagcaagataggtatttctatgctttaaataattcatatgctgccaatttttgtttcatcggcgcatacaaaaattaatttgttgatatatatcaaatggccatcgcacaaacacgccatacataatgttgactcatgcttttcttgcacatttgggctatttgattacctagtagcccataggtggtttctgttttcttttaatttgtcgttctggaggtga-AA--TTTGC--GCTA-AATAAC---CAGGTGTATCCAT-AG--TGG-------ATAAACCCTgaattttatttatacgctaaaattaggtttaggaaaattaacgtcgggttttcgacgcttcattgtgttgtgcatctgcgcatgtccagatcagtctccctttcatctttgcgaattcaagaggcgcagacgtacaaaaatttaatacccctcctcccctgcatttaagtttgtaggtggttgctttggggcgctttattttaatctttcagcgtcatggtcatttggtgtggtggacattcagtccgcctcaggggcggtcacggtactggaattggatgacgttcgggcttgatgtacctaaaattgagtttcttatcgggactggcataaatttgcaatagtttgctgtctccaggggggcacatgttttttccaggtccctgggccaagatggtatttctatgcttttaaataattatatgctgcctcattttgtttctatcggcgcatacaaattcatttgttgatcatatattaatggccatgacaaacactgccaaacataatgtactcatgtttttcttgcacattgggcatatttgacattacctagtagccaataggtggtttctgttttcttaattgggtcgtggatggtggaaatttgct
gi|12 : -GGTTTATCCAC-TA--TGG-------AT-ACACCTGGTT--ATTTAGCG-CA-AATTA----G--TT-----TATTTTAT---------T--CA----TA-TTAGGAA--AATT-GCG-TCGGG--TTCGA--CCTTCA-TGT-G-TTGCGCAT-agtttattttattcatattaggaaaattgcgtcgggttcgaccttcatgtgttgcgcatg
gi|3 : ag-GGCATAATTTTGC-ATAGTTGGCTGTCTCC---AGGGGGCAC-TGTTTTTTC---C----AGGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT------AAT--TC-A-------TAT--GC--TGCC-A-AT----TGTTTC-A---TCGGCG-CAT--ACAAAAATTCATT---TGTT--GA-----TATA--TAT-T--AA--ATGGCCATGA-CA-----------AACATAA-----TGA-CTC-G-------TGTTTTT---CT-------TGG-ATAT---TGGGCATATTTG--ATAACC-T-A-TAG----CTAATAGCCAATAGATG-G-TTTCTGTT-TTC-TTTGTC-T--GTCGTTGTG--GA--GGTGAAA-TTTGTC-GCg
gi|8 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcattt-GGCATAACTTTGC-ATAGTTTGCTCTCTC----CAGGGGCACT-GTTTTTC----C----AGGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT------AAT--TG-A-------TAT--GC--TGCC-A-AT----TGTTTG-A---TCAGTG-CAT--ACAGAAATTAATT---TGCT--G------TACA--TAT-T--aa
gi|5 : actCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTGTTTTTTTGTGC----AGGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT------AAT--TT-A-------TATTAGCTGTGCC-A-ATAT--TGTTTC-AGGTTCGGCGGCATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTA-ATTTATGT--AAACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-------TGG-A-ATTTATGGGCATATTTT--GTAACC-TCAGTAGGCATC-AA-------TAG--GTG-TTTCTGTT-CTC-T--ATT-T--gggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : AGTTTGCTGTCTCC---AGGGGGCAC-TGTTTTTTC---C----AGGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT------AAT--TT-A-------TAT--GC--TGCC-A-ATTTT-TGTTTC-A---TCGGCG-TAT--ACAAAAATTCATT---TGTT--GA-----TATA--TAT-TAAAA--ATGGCAATGA-CAAACAC-GC-C-CATATAtgatctacgttgc
gi|13 : TCTCC---AGTGGGTACTGGTTTCTT----TTGCAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT--C----AT--TT-A-------TAT--GC--TGCC-A-ATTTTTTgact
gi|11 : TGTTTTTC----C----AGGTTTC-CTGAGATGAAGAT----AGTATTTCTATTGCTTAATATATATATTC-ATTTGTCTTAT--GC--TGCC-ACAT------CATC-A---TCGGCA-CAT--A
gi|6 : gctacCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT---G-AAATAATTTA-------TAT--GC--TGCC-A-ATTTT-TGTTTC-A---TCGGCGC-AT--ACAAAAATTAATT---TGTT--GA-----TATA--TAT-T--AA--ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTC-G-------TGTTTTT---CT-------TGC-ACAT---TGGGCATATTTG--ATTACC-T-AGTAGC---C-AAT------AGG-TG-G-TTTCTGTT-TTC-TTAATT-T--GTCGTTGTG--GA--GGTGAAA-TTTGTC-G-CAAAATAacacaacttt
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC--C----AT--TT-C-------TCT--GC--TGCCGA-ATTTTa
gi|10 : caTC-A---TCGGCGC-AT--ACAAAAATTCATG---TGTT--G------TATA--TAT--------ATGGCCATGA-CAAACA-----------TAATA---TGA-CAC-GT-------GTTTTT---CTTGGATATTGCCATAT---TGGGCATATTTG--ATAACC-T-GGTAGC---C-AAT------GGG-CG-G-TTTCTGTT-TTC-T---TT-T--GTCtgg
gi|8 : -AT------TAATTTG---CTG------TAC-ATAT---TGGGCATATTTG--ATAACC-T-AGTAGC---C-AAT------AGG-TG-G-TTTCTGTT-CTCTTTTGTC-T--GTCGTCGTG--GA--GGTGGAA-TTTGTC-G-CAAAATtgtcg
gi|14 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaa--ATAACCAT-AGTAG----C-CAT------CAG--GTGAATTCTATTATTT-TTTGTT-TTAGTCGTTCAGTGGG--GGTGGAATTTTGTTCGC--AAATA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111
lowQualScore : 11 222222222222222222222222222222222222 2222222 1 4444 22 33 1111 55555 111 33 1 222222 1 222 2 99999999999999999999999999999999999999999999999999 444444 222 11111 222 22 55555 222 5555555 2 1 2 1 444444 2 33 2 2 1 33 111 2 33 2 1 1 1 11 1 111 1 33 1 11 44444 1 3333333 22222 2222 11 3333 1 1111 1 111 22 22222222 222 11 1111 11 1 1 1 11 444444444 1 1111 8888888888888888888888888888888888888888888 1 11 1 1 1 1 22 11 1 11 5555555555 1 444 3333 2222222 111 2 2222 33 44444444 3333 2222 222 1 2 2 2 1 2 11 22 1 1 11 1 11 1 1 2 1 1 1111 1 111 111 1111 33333 11 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 1 11 1 1 1 1 2
lowQualScore : 88 1 555555555555555555555555555555555555 1 3 1111111 2 3 0 2 6666 00 1 0 7 1 7 1 7 00 6666 22222 555 00 2 22 1 555555 3 555 3 6 1 66666666666666666666666666666666666666666666666666 7 333 555555 000 99999 0 111 22 0 11111 7 22 555 333 7 9999999 11 7 3 0 4 3 4 999999 7 0 3 00 3 3 4 6 88 444 0 3 99 1 3 3 3 3 7 33 0 66 2 777 0 8 33 3 0 3 33 00000 0 2222222 3 22222 0000 33 2 1 5555 3 4444 7 1 3 555 1 00 3 1 99999999 3 8 1 8 8 8 0 000 11 4444 11 66 6 0 8 0 0 0 33 333333333 0 4444 3 4444444444444444444444444444444444444444444 0 33 0 0 0 99 0 11 33 0 2 44 4444444444 1 5 555 0 8888 22 1 5555555 1 000 11 1 3 7777 6 00 6 77777777 6 5555 2222 111 3 0 0 0 5 0 88 77 2 5 5 88 5 88 5 4 4 5 0 3 1 0 9999 2 3 6 111 111 6 5 0 5 0000 5 00000 33 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 1 6 3 00 0 0 0 0 0 3
lowQualScore : .. . .................................... . . ....... . . . . .... .. . . . . . . . .. .... ..... ... .. . .. . ...... . ... . . . .................................................. . ... ...... ... ..... . ... .. . ..... . .. ... ... . ....... .. . . . . . . ...... . . . .. . . . . .. ... . . .. . . . . . . .. . .. . ... . . .. . . . .. ..... . ....... . ..... .... .. . . .... . .... . . . ... . .. . . ........ . . . . . . . ... .. .... .. .. . . . . . . .. ......... . .... . ........................................... . .. . . . .. . .. .. . . .. .......... . . ... . .... .. . ....... . ... .. . . .... . .. . ........ . .... .... ... . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . . ... ... . . . . .... . ..... .. .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . . .. . . . . . .
lowQualScore : 55 0 000000000000000000000000000000000000 0 2 5555555 5 2 0 0 5555 77 0 7 3 0 3 0 3 77 0000 77777 333 77 0 00 0 000000 3 777 3 7 0 77777777777777777777777777777777777777777777777777 3 000 333333 777 77777 7 777 77 7 00000 3 00 000 000 3 3333333 77 3 7 7 0 7 0 000000 3 7 3 77 7 3 0 7 33 333 7 7 00 0 3 3 3 3 3 88 0 55 5 555 0 8 88 2 0 2 88 88888 0 5555555 2 55555 2222 22 5 0 0000 3 7777 3 0 3 333 0 77 2 4 00000000 2 0 0 0 0 0 8 000 00 0000 00 44 4 8 0 0 0 2 22 222222222 0 8888 2 8888888888888888888888888888888888888888888 0 88 0 0 0 00 8 00 88 0 0 00 7777777777 0 0 777 7 0000 00 0 3333333 0 000 77 0 3 7777 7 77 7 33333333 7 0000 3333 333 3 0 0 0 0 0 00 55 5 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 3 7 777 777 7 7 1 0 6666 0 00000 88 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 3 777 22 7 7777 0 7 3 33 8 8 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCAC--------TCCT--AGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA----ATTTGTGCCT-CCACTT--GATTTAGTCGGGAA-AAATCTGT-GAA--TTTGAC-ATGTTGNTTTCTTGGCATT--------------------TTGTG-----A-TTGATTTACGGG--CA-CATATGTGCCTCC-AC---TTGGTTTA-GTTGGAAAA-CGTTTTTGAATTT-GGACA-----TGTTGANTTT-CTTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-GATTTGT-GGAA-AATTCG----GCTGCAAAATTGCCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAAAA-TTGCCGCCCCATTCAATGTGTGG-CGGATGGGTCAATCGACGTTGT-CTATT-GCCNC-ATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---G-GGCCAAGATA-GTATTTCTA-TGCTT--TA---AATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG--ATATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAAC------CATAGTA-GCCAATA-GG-T-GGTTTCTGTTTTTTTTTGA-TTT--GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAAT-AG-GGTTTATCCACT-ATGGA--------TAAA-CCTGG-T--ATTTAGCGCAAATTAACCG-ATT-----T-A-TTTA-T--A-GCTAAA-AT--TA----GGTT-AGGAAA--ATTA-CGT-CGGGT-TTCGGACNCTTCACTGT--GTT-GTGCATC-CGCGC--AT-GT---CCAGATCAGTC-TCCCTTT--CACTTTG---GCTAATTCG-AAG-GGAGCAGACGTTACAATAATTT-GATACCAC--CCTCCCTCCCCT--GCATTTAAGTTTG-TAGG---TGGTTGGCTTT-G--CGCTTT-CATTTTA-CCTTTCAGCGTC-ATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-T-G---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTNATTTGTCGTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCAT--------TTCT--AGTTAATTTACTATTTGTTATTNGCTTTG-TAT--TGGTACCAGTTGTAC-CCGATTC---TTGCACCATTTGTT-GCTNTCAATATTTACATCGTGANTTTGACATGTTGNTTTCTTGGCAAATTTGTGAATTCCG-GGCACCGCNTTTGTGCCT-CCACTTTTGATTTAGTNNGNAANAAATCTGT-GAA--TTTGACCATGTTGCTTTCTNGGCATTTGTGAACTTGGGGCACCATTTTGTGCCTCTANTTGATTTANNNGAACAACATATGTNNNTCCGACATNTTGGTTTNAGTTGGAAAAACGTTTNNGAATTTAGGGCACCATTTGTTGNNTCCACTTGGTNNNTTGTGANAAATTCTTNGGGGCACCATTTTGTGCCTGAGCCGCTTNGATTTGTTGGAANAATTTACTTGGCTGCAAAATTGCCGCCCCCATTTTGGAAAAATTTCACTGGGCTGGCAAAANTTGCCGCCCCATTCAATGTGTGGGCGGATGGGNCAATCGACGTTGTACTATTTGCCNCCATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---G-GGCCAAGAT--GTATTTCTA-TGCTT--TA---A-TA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTNATTTGTTG--TAATATATT-AAATGGCCAT-GAACAAACACGCCAAACATAATAT-GACTCGTTGTTTTTCTTGCACATT-GGGCATATTTGATAAC------C-TAGTA-GCCAATA-GG-T-GGTTTCTGTTTTTCTTTN--TCT--GTCGTT--G-TGG--AGGTGAAATTTTGCTCGCAA-AATAAT-AG-GGTTTATCCACT-ATGGA--------TAAA-CCTGG-T--ATTTAGCGCAAATTAA----ATT-----T-A-TTTA-T--A-GC--AA-AT--TA----GGTT-AGGAAA--ATTA-CGT-CGGGT-TTCGGACNCTTCGCTGT--GTT-GCGCATC-CGCGCTCATTGTTTACNAGATCAGTCGTCCCTTTTGCACCTTNTCCGNNANTTCGCAGGTGGNGCAGACGTTACAGNANTTTCGATACCACTCCCTCCCTCCCCTTTGCATTTAAGTTTGCTAGGCCTTGGTTGGCTTTGGGGCGCTTTTCGTTTTANCCTTTCAGCGTC-ATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-T-G---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATNGGTG-GTTTCTGTTTTC-TTTGTTTGTCGTTGTGGA-GGTGG-AA-TTTGTCGCCAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCAC--------TT-------------------------TTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA----GATTGTGCCTTCCACTT--GATTTTATCGGGAA--AAT-TGTTGAAATTTTGAC-ATGTTTGTTTTTTGGCAT---------------------TTGTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC----TGGGTTATATTGGAAAA-CATTTTT-AATTT-GGACA-----TGTTGATTTT-CTTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTTGAATTTGT-GGACAAGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATTGCCGCCCCATTCAATGTGTG--CGGATGG-TCAATCGACATTGT-CTAT--GCCCT--TTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCG-AGCCAAGAT--GT-TTTCTA-TGCTT--TA---AATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACAT--GGGCATATTTGATTAC------CATAGTA-GCCAATA-GGGT-GGTTTCTGTTTTTCTTTAAATTT--GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAAT-AGCGGTTTATCCACT-ATGGA--------TAAAACCTGG-T--ATTTAGCGCAAATTAACCG-ATT-----T-A-TTTAAT--AAGCTAAA-AT--TA----GGTT-AGGAAA--ATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCGC--AT-GT---CCAGATCAGTTCTTCCTT---CACTTTG---GCTAATTCAAAGA--GAGCCAACGCTACAATAATTT-GATACCAC---CTCCCTCCCCT--GCATTTAAGTTTG-TAG----TGGTTCGCTTTTG--CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGTG-TGGACCATTCAG--CGCCTGGCAGGCGCG-TCACG-TACTGGAAT--GATGACGTTCGG-CT--ATGTACCTAAA-TAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTC----AGGGGGCAC-TTG---TTTTTTC----A-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTAA--AATAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTCGT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTCTTTTGTCTGTCG
gi|11 : ACT--GTTT-T-TCCAGGTTTCCT---GAGATGAAGATA-GTATTTCTATTGCTTAATATATA-TA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gct-AG-GGTTTATCCACT-ATGGA--------TACA-CCTGGTT--ATTTAGCGCAAATT-A----GTT-----T-ATTTTA-T------------T--CA----TATT-AGGAAA--ATTG-CGT-CGGGT-TC--GAC-CTTCA-TGT--GTT-GCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-T-GGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT-----CAT--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAAC------CATAGTA-GCCATCA-GG-T-GAATTCTATTATTTTTTG--TTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAAt
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC-----CAT--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCA--GCATTTGTGCCT-C-ACTTTTGATTTA-TCTGGAAAAAATCTGT-GA---TTTGACCATGTTGATTTCTTGGCATT--------------------TTGTG---------AATTTAGGCG--CAACATATGTTCCTCC-AC---TTGGTTTAAGTTGGAAAAACATTTT-GAATT---GACA-----TGTTGAATTT-CTTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTGATTTGT-GGAACAATTCG------TGCAAA-TTGCTGCCCC-ATT--GGAAAAATT-CACTGGGCTGGCAAAATTTGCCGCCC-ATTCAATGTGTGG-CGGATGGGT-AATCGACATTGTACTATT-GCCGCCATTTGGCAATAATTTTG-CATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---G-AGC-AAGATAGGTATTTCTA-TGCTT--TA---AATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG--ATATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTAC------C-TAGTA-GCCCATA-GG-T-GGTTTCTGTTTTCTTTTAA-TTT--GTCGTT--C-TGG--AGGTGAAATTCTG-TCGCAA-AATAAT-AG-GTTTCATCCACTTATGG---------TAAA-CCTGG-T--TTTAAGCGCAAATTAACCGAATT-----TTA-TTTA-T--ACGCTAAA-AT--TA----GGTTTAGGAAA--ATTAACGT-CGGGT-TTTCGACGCTTCATTGT--GTT-GTGCATC-TGCGC--AT-GT---CCAGATCAGTC-TCCCTTT--CATCTTT---GCGAATTC--AAGAGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCCT--GCATTTAAGTTTG-TAGG---TGGTTG-CTTTGGGGCGCTTT--ATTTTAATCTTTCAGCGTC-ATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACAT-G---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTTA--AATAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG--GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA-----------CT--AGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctCCATTTACATGCATATGGTCCTTAAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCACC--ATTTGTGCCT-CTACTT--GATTTAGTGGATAACA---CTGT-GAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATTTC--TTGG-----CGTTTGTGAATTTAGGGCACCATTTGT-GCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-GATTTGTTGGAA-AATTTACTTGGCTGCAAAATTGTCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAAAA-TTGCCGCCCCATTCAATGTGTGG-CGGATGGGTCAATCGACGTTGT-CTATT-GCCTC-ATTTGGCA-TAATTTTG-CAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---G-GGCCAAGATG-GTATTTCTA-TGC-T--TA------A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG--ATATATATT-AAATGGCCAT-GA----------CAAACATA--AT-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATAGC-TAATA-GCCAATA-GA-T-GGTTTCTG-TTTTCTTTG--TCT--GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaATAGTTGATAAC------C-TA-TACGCCTATCCGG-TAGGTATCAGTTTCTTTTGT--TCT--GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATTAAA-CGTGG-TTTATTTAGCGCAAGCTAA----ATTATGTAT-A-TTTG-TTAG-GC--AACATAGTAAGGTGGTA-ACGAAACAATTA-CGC-CGGGTCTTCGGACTCTTCGCTGTAGGTG-GTGCATCTCGCGCTCATTGTTTACAAGATCAGTCGTCCCTTT-GCACTTTGTCCGATACTTCGCAAGTAGAGCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTA-GCCTTGGTTGGCTTT-----GCTTTTCG-TTTA-----TCATCGTC-AT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGT-G---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT-----AAT--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-TAT-TTTGtcctcatgacttctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTGAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTCGTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-T-G---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT-----AAT--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTCGTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-T-G---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 11 22222222222222222222222222222222222 222222222 1 3333 1 11 1 33 1 1 11 1 222 1 55555555555555555555555555555555 11 1 1 222 44444 11111 11 11 2222 222 333333 1 111 1 111 444444 1 11 1 1 1 1 1 111 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 11 2222 2222 1111 11 1 1 11 44444444444 22 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 11 11 111 1 4444 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 333333333333 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 22222222222222222222222222222222222 1 000000000 2 3 0 5555 0 7 0 7 7 7 88 3 66 3 2 88 3 2 7 6 555 3 1 7 7 44444444444444444444444444444444 3 88 3 7 3 333 00000 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 111111 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 777 3 3 3 7 33 0 5 2 777 2 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 66 8 8888 8 44 4444 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 44 44 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 66 333333333333 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 33 0 8 3 0 0 0 3
lowQualScore : .. . ................................... . ......... . . . .... . . . . . . .. . .. . . .. . . . . ... . . . . ................................ . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ...... . . . .. . . . . . . . . . . . ... . . . . .. . . . ... . .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . .. . .... . .. .... . .... .. .. .. . . . . . .. ........... .. ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. .. ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . .. ............ .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 22222222222222222222222222222222222 0 888888888 5 2 0 2222 0 3 7 3 3 3 33 3 77 3 0 33 7 0 7 7 777 3 0 3 3 77777777777777777777777777777777 7 33 3 3 3 333 00000 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 777777 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 333 3 3 3 3 88 0 5 5 555 0 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 88 0 0000 0 22 4444 0 0000 00 44 66 8 0 0 0 2 22 22222222222 88 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 00 00 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 99 888888888888 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 00 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCAC--------T-CT--AGTTGATTTAC-GTTTGTTATTNGCTTT-GTAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTG-TTGCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-CGTTTGTGCC-TCCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGCATTTTGTG-A--------------------------TTGATTTACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC----GGCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC-C-ATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGGT-TATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGAGCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCAC--------TCCT--AGTTGATTTAC-GTTTGTTATTNGCTTT-GTAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTG-TTGCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA--ATTTGTGCC-TCCACTT--GATTTAGTCGGGAAAAATCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGCATTTTGTG-A--------------------------TTGATTTACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA-GTTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC----GGCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCNC-ATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACC-ATA-G----TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GATTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-GGAGCAGACGTTACAATAATTT-GATACCA--CCCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--AAA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTNATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCAC--------T-------------------------TTTGCTTTGGTAT--CGGTACCAG-TGTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA--GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGCA-TTTGTGAA--------------------------TTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC-C-TTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGAGCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TTTAAAA----TAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGGT-TATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGC--TT--CA-----T--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGC--TC---CA----T--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTT-GTAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTA-TTGCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGCATTTGTGCC-TC-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGCATTTTGTG-A-----------------------------ATTTAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC----G--TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACC--TA-G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG--TTTTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTCA-AGA-GGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTT--AAA----TAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA-----------CT--AGTTAATTTACTATTTGTTATTTGCTTT-GTATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTG-ct
gi|3 : atttgtgctCCATTTACATGCATATGGTCCTTAAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTG-T-GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCACCATTTGTGCC-TCTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTT-GTG-AATTTAGGGCACCATTTGTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCTC-ATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGAGCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGC--TT---AA----T--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--GAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGC--TT---AA----T--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 2 666666666666666666666666666666 11 1 1 222 22222 11111 11 11 2222 222 333333 1 1 1 1 111 444444 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 33333 11 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 3 333333333333333333333333333333 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 3 3 3 777 111111 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 00000 33 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . . .............................. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . . . . ... ...... . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . ..... .. .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 7 777777777777777777777777777777 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 3 3 3 777 777777 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 00000 88 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGCATTT-GTGAA-------------------------TTGATTTACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-GA-TTTGT-GGA-A-AATTC----G-CTGCAAAATTGCCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGA-TA-TATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGCATTTTGTGA--------------------------TTGATTTACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-GA-TTTGT-GGA-A-AATTC----GGCTGCAAAATTGCCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGA-TA-TATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGCATTT-GTGAA-------------------------TTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC----G-CTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGTG-CGGATGG-TCAATCGACATTGT-CTAT-GCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTAA--AATAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT-----CAT--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC-----CAT--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGCATTTTGTGA-----------------------------ATTTAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTGA-TTTGT-GGA-ACAATTC----G--TGCAAA-TTGCTGCCCC-ATT--GGAAAAATT-CACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTTG-CATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTGA-TA-TATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTTA--AATAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTT-GTGAATTTAGGGCACCATTTGTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-GA-TTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTTG-CAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTGA-TA-TATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT-----AAT--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTGAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT-----AAT--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 111111111111111111111111111111111111111 11 1 1 222 22222 11111 11 11 2222 222 333333 1 1 1 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 333333333333 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 666666666666666666666666666666666666666 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 3 3 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 66 333333333333 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . ....................................... . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . . . . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . .. ............ .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 000000000000000000000000000000000000000 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 3 3 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 99 888888888888 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGCAT--------------------TT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-GA-TTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGA-TA-TATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGCAT--------------------TT-GTG-----AATTGATTTACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-GA-TTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTTG-CAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGA-TA-TATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--AAA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGCAT--------------------TT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGTG-CGGATGG-TCAATCGACATTGT-CTAT-GCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TTTAAAA----TAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGC--TT--CA-----T--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGC--TC---CA----T--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGCAT--------------------TTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTGA-TTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTGCCCC-ATT--GGAAAAATT-CACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTTG-CATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTGA-TA-TATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTT--AAA----TAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-GA-TTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCGCCCC-ATT--GGAAAAATT-CACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTTG-CAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTGA-TA-TATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGC--TT---AA----T--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--GAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGC--TT---AA----T--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 00000000000000000000 1 3333333333333 11 1 1 222 22222 11111 11 11 2222 222 333333 1 111 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 33333 11 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 88888888888888888888 3 5555555555555 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 00000 33 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . .................... . ............. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . ..... .. .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 33333333333333333333 3 3333333333333 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 00000 88 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTAA--AATAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT-----CAT--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC-----CAT--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGC--------------------ATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTTA--AATAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT-----AAT--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTGAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT-----AAT--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 00000000000000000000 1 3333333333333 11 1 1 222 22222 11111 11 11 2222 222 333333 1 111 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 333333333333 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 88888888888888888888 3 5555555555555 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 66 333333333333 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . .................... . ............. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . .. ............ .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 33333333333333333333 3 3333333333333 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 99 888888888888 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--AAA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TTTAAAA----TAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGC--TT--CA-----T--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGC--TC---CA----T--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGC--------------------ATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTT--AAA----TAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGC--TT---AA----T--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--GAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGC--TT---AA----T--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 00000000000000000000 1 3333333333333 11 1 1 222 22222 11111 11 11 2222 222 333333 1 111 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 33333 11 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 88888888888888888888 3 5555555555555 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 00000 33 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . .................... . ............. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . ..... .. .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 33333333333333333333 3 3333333333333 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 00000 88 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTAA--AATAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT-----CAT--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC-----CAT--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGC--------------------ATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTTA--AATAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT-----AAT--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTGAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT-----AAT--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 00000000000000000000 1 3333333333333 11 1 1 222 22222 11111 11 11 2222 222 333333 1 111 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 333333333333 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 88888888888888888888 3 5555555555555 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 66 333333333333 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . .................... . ............. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . .. ............ .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 33333333333333333333 3 3333333333333 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 99 888888888888 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--AAA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TTTAAAA----TAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGC--TT--CA-----T--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGC--TC---CA----T--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGC--------------------ATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTT--AAA----TAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGC--TT---AA----T--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT--GAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGC--TT---AA----T--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGC--TT---AA----T--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 666666666666666666666666 2222222 1 3333 22 11 1 3333 111 11 1 222 1 00000000000000000000 1 3333333333333 11 1 1 222 22222 11111 11 11 2222 222 333333 1 111 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 2222 1111 11 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 33333 11 111 222222222222 111111 111 111 11 2222222 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 3 1111111 2 3 0 5555 00 0 7 7 7 88 3 4444 555 88 1 2 1 6 555 3 1 88888888888888888888 3 5555555555555 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 1111 8 4444 11 66 44 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 00000 33 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 444 1 444 8 66 1111111 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . . ....... . . . .... .. . . . . .. . .... ... .. . . . . ... . . .................... . ............. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. .... . .... .. .. .. . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . ..... .. .. .. . . . . ... . . .. . ............ . . . ...... . . ... . ... . .. ....... ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 2 2222222 5 2 0 2222 77 7 3 3 3 33 3 0000 333 33 0 0 0 7 777 3 0 33333333333333333333 3 3333333333333 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0000 0 0000 00 44 66 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 00000 88 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 222 0 000 0 66 7777777 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAGT-GTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTTTTTCTTTAAATTT-GTC-TT--G-TGG--AGGTGAA--TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTAA--AATAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCATTGT-------TTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-----------TAATA---TGA-CACGT-GT-------TTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT-----CAT--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT-GTTTTAGTCGTTCAG-TGG--GGGTGGAATTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC-----CAT--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTTG-TAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTATT-GCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCCT-C-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGC--------------------ATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTTTTCTTTT-AATTT-GTCGTT--C-TGG--AGGTGAAATTCTGT-CGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTTA--AATAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAACATAATG---T-A-CTCA-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTTG-TATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTGct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTGT--GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCCT-CTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTTTTCTTT---GTCT-GTCGTT--G-TGG--AGGTGAAA-TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTTTCTTTT--GTTCT-GTCGTC--GGTGGGAAGGTGAAATTTTTTTCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT-----AAT--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCAC-AAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTGAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAACATAATA---TGA-CTCG-TGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT-----AAT--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : act-------TTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C-CATATA
blockSeqs : TA C CTAGTTAATTTACTATTTGTTA G T TATAAT C T G CGGT T T A T AA . GCA CT TT T T A G A C A ATTTGTGAATTTAGGGCACC T CCTCTACTTGATT G AA A A G ATG TAAG AAAAA TG TA GCAC G A CAC T AAATTC A T TG T AC ACTTG C A . . . G . T C G G C A T GC A . T T TC . T C . TG A G A T T AATA T A TTTGTCT A ATTT TCAT AA C . . . C CA T T AT T T A A T C CTAA . AA TGT A CAG GA AT TT T T . TT GGTTCAAATT TT A CCGAATTT GTTAGGCAACATAGTAAGGT T AC A . C TC G T AG . TC CT T TTA . G T G TCC GC T C GT C ACTC C TT C C GCC G . GGG G AT ATC . T T C C G . TC . G G G TG G TG A T A A . T A A AGTG G A GTT TGTG A G A CAGA G GAAAT AA TA TG G T . T GGT G . TG G CTGTCTAGAGTA A C TAAAA G T CA C ACA C AT GCTATGC TGA G GATATTGC T TTA TT C GCAT . T TA T C T A . .
blockSeqs : T T TATG C T . . . T . . . . CCA C . G . C G . . C . . AATT T . . . . . TC . G . . . G . . . . . G . A . . . . . . . . . . G G . . T T . . . T . . . C . C A . A . T . A . . A CA T A C . . . . A . . GT T . A T T . CC . GT TAA . GG . AT TT . . . T AT T A ATTATGTA ATACGCTAAAATTA . . . . . CG T C . . T . . . . . T . . . . . TT . . . . . . G . . . . CG . . . . . . . T . AG G G . G . . . . . TTA . . . . T . . . . . . . . A . AAAC . . AC A . . T . . . . C . . . C . . TA . C . . . .
blockSeqs : G . . . T . . . . . . . . G . A . . . . . . A A T . . . A T . . . GT GT . C . AT T . . . . T T . TTTATTT ATA . . . . . . . . . . C . A T . . C . . . . . . . . . . A . . . . . . . . A . TAA . . CA C . . T . . . . C . . . C . . TT . T . . .
blockSeqs : A . . . . . G . G . A T . A G . . C . . . . . . . . . . T . . . . . . . . A . TA . . C T . . T . . . . T . . . C . . . . C
blockSeqs : A . . . C . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : G*** AT T* C*** ***** ** TAA*** CA* T* C***
originalCons : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTT-GNTTT-GTCGTT--G-TGG--AGGTGAAATTTTGTTCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AACATAATG---TGA-CTCGTTGT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
finalCons : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTTG-TAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTGTT-GCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCCT-CCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTTTTTTTTG---TTT-GTCGTT--G-TGG--AGGTGAAATTTTGT-CGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAA---ATGGCCATGA-CAAACAC-GCCA-AACATAATG---TGA-CTCGT-GT-------TTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAGC---CAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 666666666666666666666666 222222222 1 3333 1 11 1 3333 1 1 11 1 222 1 00000000000000000000 1 3333333333333 11 1 1 222 22222 11111 11 11 2222 222 333333 1 111 1 111 33333 1 11 1 1 1 1 1 33 1 1 1 11 1 1 111 11 1 1 2222 1 3333333 22222 2222 11 1 1 1 1 1 111 1 1 4444 222 11 1111 11 111 1 1 1 11 44444444444 11 3333333333333 44444444444444444444444 1 11 1 1 1 1 1 11 1 11 11 1 222 1 1 1 222 22 1 1 111 1 3333 11 1 222 1 222 2222 444 1 1 1 11 11 1 1 11 1 11 1 1 1 1 1 1111 2 111 1111 1111 33333 11 111 222222222222 111111 11111111 33333333 111 1 22222222 1 111 1111 11 1 1 1 1
lowQualScore : 88 1 888888888888888888888888 1 000000000 2 3 0 5555 0 7 0 7 7 7 88 3 4444 3 2 88 1 2 1 6 555 3 1 88888888888888888888 3 5555555555555 3 88 3 7 3 333 11111 77777 0 44 11 8888 6 1 333 7 888888 7 3 0 666 3 777 33333 6 7 0 3 88 3 3 3 3 6 6 6 6 0 3 7 11 3 3 3 7 33 0 5 2 777 66 7 0 3 0 3 1111 9 0 2222222 3 22222 0000 33 2 3 3 3 3 88 7 3 555 7 3 3 1 0 0 8 2222 8 44 8 555 8 11 4444 11 444 6 0 8 0 0 0 33 44444444444 33 3 1111111111111 22222222222222222222222 0 33 0 0 0 99 0 9 33 0 44 88 3 333 3 3 7 3 333 55 3 3 000 3 0000 6 88 6 3 555 6 3 333 6 3333 222 3 7 7 6 6 5 5 88 77 1 5 5 88 5 88 5 1 1 5 5 3 1 0 9999 2 0 111 6666 6 5 0 5 0000 5 00000 33 66 66 5 6 5 5 000 5 5 77 5 999999999999 5 5 0 444444 6 6 77777777 8 77777777 111 3 44444444 2 111 99 6 2222 6 6 00 0 8 3 0 0 0 3
lowQualScore : .. . ........................ . ......... . . . .... . . . . . . .. . .... . . .. . . . . ... . . .................... . ............. . .. . . . ... ..... ..... . .. .. .... . . ... . ...... . . . ... . ... ..... . . . . .. . . . . . . . . . . . .. . . . . .. . . . ... .. . . . . . .... . . ....... . ..... .... .. . . . . . .. . . ... . . . . . . . .... . .. . ... . .. .... .. ... . . . . . . .. ........... .. . ............. ....................... . .. . . . .. . . .. . .. .. . ... . . . . ... .. . . ... . .... . .. . . ... . . ... . .... ... . . . . . . . .. .. . . . .. . .. . . . . . . . . .... . . ... .... . . . . .... . ..... .. .. .. . . . . ... . . .. . ............ . . . ...... . . ........ . ........ ... . ........ . ... .. . .... . . .. . . . . . . .
lowQualScore : 55 0 222222222222222222222222 0 888888888 5 2 0 2222 0 3 7 3 3 3 33 3 0000 3 0 33 0 0 0 7 777 3 0 33333333333333333333 3 3333333333333 7 33 3 3 3 333 77777 77777 7 00 00 3333 7 0 333 3 333333 3 3 7 777 3 777 33333 7 3 7 3 33 3 3 3 3 7 7 7 7 7 3 3 77 3 3 3 3 88 0 5 5 555 55 0 0 2 0 2 2222 8 0 5555555 2 55555 2222 22 5 3 3 3 3 33 3 3 333 3 3 2 4 6 8 0 0000 0 22 0 000 0 00 0000 00 444 0 8 0 0 0 2 22 22222222222 22 2 0000000000000 55555555555555555555555 0 88 0 0 0 00 8 0 88 0 00 33 3 333 3 3 3 3 333 33 3 3 000 3 7777 7 33 7 3 000 7 3 333 7 3333 333 3 3 3 7 7 0 0 00 55 0 0 0 00 0 00 5 0 0 5 0 3 2 0 0000 5 0 777 8888 7 7 1 0 6666 0 00000 88 99 99 0 5 0 7 000 7 7 99 7 333333333333 0 7 1 444444 7 7 77777777 0 00000000 777 3 22222222 0 777 22 7 7777 7 7 77 8 0 2 0 0 0 3
consensus : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTT-GTAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTG-TTGCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCC-TCCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTT-TTTTTTTA-GTT-T--GTCGTT--G-TGG--AGGTGAAA-TTTTG-TCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT--A--AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-CAAA-C-ATAATATGA-CTCG--------TGTTTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
Reference ( family-1306 ) : GAGATTTTACAGTGCCATTTNCACTCTAGTTGATTTAC-GTTTGTTATTNGCTTT-GTAT--CGGTACCAGTTGTAC-CTGATTCG--TTGCACCATTTG-TTGCTCTCAATATTTACATCGTGAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAG-GGCA-C-GTTTGTGCC-TCCACTT--GATTTANTCGGGAAAANTCTGTGAA--TTTGAC-ATGTTGNTTTCTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TTGGTT-TA--TTGGAAAA-CGTTTTTGAATTTGGA----CATGTTGANTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGT-GGA-A-AATTC-----GCTGCAAAATTGCCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCC--CATTTGGCA-TAATTTT-GCAT-AGTTTGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GAGCC-AAGATAG-TATTTCTA-TGCTT----TAAATA-TTCA-------TATGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTG-AT-ATATATT-AAATGGCCAT-GNACAAACACGCCAAACATAATGT-GACTCGTTGCTTTTCTTGCACATT-GGGCATATTTGATAACCTATA-GC---TAGCCAATA-GGTGGTTTCTGTT-TTTTTT---GTT-T--GTCGTT--G-TGG--AGGTGAAA-TTTTG-TCGCAA-AATAA-TAG-GGTTTATCCACT-ATGGA--------T-AAACCTGG-TTATTTAGCGCAAATTAACCGA--TT-----TATTT-A-T-A-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CG-TCGGGT-TTCGGACNCTTCACTGT--G-TTGTGCATC-CGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CACTTTG---GCTAATTCG-AAG-AGA-GCAGACGTTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TAG--GTGGTTGGC-TTTG---CGCTTT-CATTTTA-CCTTTCAGCGT-CATGGTTCATCTTGGCTGTGGTGGACCATTCAGTCCGCCTGGCAGGNGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATNGNGTTTCTTATCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCTCC---GGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTCATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGA-CAAACAC-GC-CAAA-C-ATAATGTGA-CTCG--------TGTTTTT---CT-TG--------CACAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATA
gi|1 : GAGATTT--CAGTGCCATTTGCACT----------------------TTTGCTTTGGTAT--CGGTACCAG-TGTAC-CTGATTTG--TCGCACCATTTATTTGCTCTCAATATTTACATTG-GAATTTGACATGTTGATTTCTTGGCA--TTTGTGAATTTAGTGGCA---GATTGTGCCTTCCACTT--GATTTTATCGGGAAAATTGT-TGAAATTTTGAC-ATGTTTGTTTTTTGGC--------------------ATTT-GTG-----AATTG---TACGGG--CA-CATATGTGCCTCC-AC---TGGGTTATA--TTGGAAAA-CATTTTT-AATTTGGA----CATGTTGATTTTC---TTGGTATTTTGTGAA------TTAAGGGCACCATTT-GTGCCTGAGCCACTT-GAATTTGT-GGACA-AGTTC-----GCTGCAAAATTGCTGCCCCCATTTTGGAAAAATTTCACTGGGCTG-CAACAATT-GCCGCCCCATTCAATGTGT-GCGGAT-GGTCAATCGACATTGT-CTA-TGCC--CTTTTGGCA-TAATTTTGGCAT-AGTTTGCTGTC-CCAGGGGGCACT--GTTTCTTTCCAGGTCCCCTTGCGAGCC-AAGAT-G-T-TTTCTA-TGCTT----TAAATA-TTCA-------T-TGCTGCCA-ATTTTTGTTTCAT--TCGGCGCAT-ACACAAAAATTAATTTGTTGAATAATATATTCAAATGGCCAT-GGACAAACACGCCAAACATAATGT-GACTCATTGCTTTTCTTGCACA-T-GGGCATATTTGATTACC-ATA-G----TAGCCAATAGGGTGGTTTCTGTT-TTTCTTTAAATT-T--GTC-TT--G-TGG--AGGTGAA---TTTGCTCGCAA-AATAA-TAGCGGTTTATCCACT-ATGGA--------TAAAACCTGG--TATTTAGCGCAAATTAACCGA--TT-----TATTTAA-TAA-GCTAAAAT--TA----GGTT-AGGAA--AATTA-CGTTCGGGT-TTCGAACCTTTCA-TGT--GTTTGTGCATT-TGCG--CA-TGT---CCAGATCAGTTC-TTCC-TT-CACTTTG---GCTAATTCA-AAG-AGA-GCCAACGCTACAATAATTT-GATACCA---CCTCCCTCCCC--TGCATTTAAGTTTG-TA---GTGGTTCGCTTTTG---CGCTTTACATTTTATCTTTTCAGCGTCCATGGTTCATCTTGGCTGT-GTGGACCATTCAG--CGCCTGGCAGGCGC-GTCAC-GTACTGGAAT--GATGACGTTC-GGCT--ATGTACCT-AAATAGTGTTTTTT-TCGCGGAC-GGCATAATTTTGC-ATAGTTTGCTGTCT-C---AGGGGGCACTTG---TTTTTT----CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTAA--AATAATCATAT--GC--TGCC-AATTTTCTGTTTC-A---TCGGC-GCCAT--ACAAAAATTCATT-T------------GTTGAT-A-ATATT--AA-ATGGCCATGA-CAAACAC-GC-C-AA-C-ATAATGTGA-CTCAT-------TGTTTTT---CTCTG--------CA-AT---TGGGCATATTTGATT--ACCT-AGTAG----CAATTAGTGTGTTTCTGTTTTC-TTAATTTGTC-GT----GG-GGTGA-AACTTTGTTGCCAAAATA
gi|10 : TC-A---TCGGC-G-CAT--ACAAAAATTCATG-T------------GTTG-T-ATATAT------ATGGCCATGA-CAAACA-------------TAATATGA-CACG--------TGTTTTT---CT-TGGATATTGCCATAT---TGGGCATATTTGATA--ACCT-GGTAG---CCAATGGGCG-GTTTCTGTTTTC-T---TTTGTCTGTCG
gi|11 : ACT--GTTT-TT-CCAGGTTTCCT---GAGATGAAGATAG-TATTTCTATTGCTTAATATATATA-TTCATTTGTCTTATGCTGCCACA--------TCATCATCGGCACATAACACAA
gi|12 : gctAG-GGTTTATCCACT-ATGGA--------T-ACACCTGG-TTATTTAGCGCAAATTAGTTTAT-TT-----TATTC-A-T-A-------------------TT-AGGAA--AATTG-CG-TCGGGT-TC--GAC-CTTCA-TGT--G-TTGCGCATcttt
gi|13 : TCTCC---AGTGGGTAC-TGGTTTCTTTTG---CAAGGTCTT-C-GGATC-ATGAT----GGTACTTATA-TGCTT-----CAT--TTATAT--GC--TGCC-AATTTT-Tg
gi|14 : ATAACC-ATA-G----TAGCCATCA-GGTGAATTCTATTATTTTTT---GTT-TTAGTCGTTCAG-TGG--GGGTGGAA-TTTTGTTCGC-A-AATAA-t
gi|15 : GGACC-AAGAT----GGTACTTATA-TGCTC-----CAT--TTCTCT--GC--TGCCGAATTTT-TGcgt
gi|2 : caATTTGC-ATTTCTT--TGGCTTT-GTAT--GGGTAC-AGTTGTACGCTGATT----TTGCACCATTTA-TTGCTCTCAATATTTACATTGTGACTTTG-CATGTTGATTTCT-GGCAAATTTGTGAATTTCA-GGCAGC-ATTTGTGCC-TC-ACTTTTGATTTATCTGGAAAAAATCTGTGA---TTTGACCATGTTGATTTCTTGGC--------------------ATTTTGTG-----AATT----TAGGCG--CAACATATGTTCCTCC-AC---TTGGTT-TAAGTTGGAAAAACATTTT-GAATT--GA----CATGTTGAATTTC---TTGGTAATTTGTGAT------TTAGGGAC-CCATTTTATGCCTGAGCCACTTTG-ATTTGT-GGA-ACAATTC-----G-TGCAAA-TTGCTG-CCCCA--TTGGAAAAA-TTCACTGGGCTGGCAA-AATTTGCCGCCC-ATTCAATGTGTGGCGGATGGGT-AATCGACATTGTACTATTGCCGCCATTTGGCAATAATTTT-GCATTAGTTTGCTGTCTCCAGGGGGCACTTCGTTT-TT--CAGGTCCC-T---GAGC--AAGATAGGTATTTCTA-TGCTT----TAAATAATTCA-------TATGCTGCCA-ATTTTTGTTTCAT---CGGCGCAT-ACA--AAAATTAATTTGTTG-AT-ATATATC-AAATGGCCATCGCACAAACACGCCATACATAATGTTGACTCAT-GCTTTTCTTGCACATTTGGGC-TATTTGATTACCTA---G----TAGCCCATA-GGTGGTTTCTGTT-TTCTTTTA-ATT-T--GTCGTT--C-TGG--AGGTGAAA-TTCTG-TCGCAA-AATAA-TAG-GTTTCATCCACTTATGG---------T-AAACCTGG-TT-TTAAGCGCAAATTAACCGAATTT-----TATTT-A-T-ACGCTAAAAT--TA----GGTTTAGGAA--AATTAACG-TCGGGT-TTTCGACGCTTCATTGT--G-TTGTGCATC-TGCG--CA-TGT---CCAGATCAG-TC-TCCCTTT-CATCTTT---GCGAATTC--AAG-AGGCGCAGACGT-ACAAAAATTT-AATACC----CCTCC-TCCCC--TGCATTTAAGTTTG-TAG--GTGGTTG-C-TTTGGGGCGCTTT--ATTTTAATCTTTCAGCGT-CATGGT-CAT-TTGG-TGTGGTGGAC-ATTCAGTCCGCCT--CAGGGGCGGTCACGGTACTGGAATTGGATGACGTTCGGGCTTGATGTACCTAAAATTGAGTTTCTTATCG-GGACTGGCATAAATTTGCAATAGTTTGCTGTCTCCA--GGGGGGCACATG---TTTTTTC---CA-GGT-CC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTTTA--AATAATTATAT--GC--TGCC-TCATTT-TGTTTCTA---TCGGC-G-CAT--AC--AAATTCATT-T------------GTTGATCATATATT---A-ATGGCCATGA-CAAACACTGC-CAAA-C-ATAATGT-A-CTCA--------TGTTTTT---CT-TG--------CACAT---TGGGCATATTTGACATTACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTGG---GTCGTGGATGGTGGAAA-TTTGg
gi|3 : cagtgcGAGATTTTACAGTGCCATTTCCA--CTAGTTAATTTACTATTTGTTATTTGCTTT-GTATAATGGTACCAGTTGTAT-CTGATT----TTGCACCAGTTG-ct
gi|3 : atttgtgctAGTTGATTTA--GATTG--ATTGGTTT---------AGTACCACTTGTAC-TCCATTCGGTTTGCACCATTTG-T-GCTGTCAATATTTACATCGTGAATTTGACATGTTGCTTTCTTGGCA--TTTGTGAATTCAG-GGCA-CCATTTGTGCC-TCTACTT--GATTTAGT--GGATAACACTGTGAA--TTTGAC-ATGTTGCTTTCTTGGCATTTGTGAATTTAGGGCACCATTT-GTGCCTCTACTTGATTTATTGGAACA-CAT-TGTGAATTTGACATGTTGATT-TC--TTGG-----CGTTTGTGAATTTAGGGCACCAT-TTGTGCCTCCACTTGATTTATTG-GAAAAATTCTTTAGGGCACCATTT-GTGCCTGAGCCGCTT-G-ATTTGTTGGA-A-AATTTACTTGGCTGCAAAATTGTCG-CCCCA--TTGGAAAAA-TTCACTGGGCTG-CAA-AATT-GCCGCCCCATTCAATGTGTGGCGGATGGGTCAATCGACGTTGT-CTATTGCCT-CATTTGGCA-TAATTTT-GCAT-AGTTGGCTGTCTCCAGGGGGCACT--GTTT-TTTCCAGGTCCCCT---GGGCC-AAGATGG-TATTTCTA-TGC-T----TA---A-TTCA-------TATGCTGCCA-A---TTGTTTCA---TCGGCGCAT---ACAAAAATTCATTTGTTG-AT-ATATATT-AAATGGCCAT-GA----------CAAACATAA--T-GACTCG-TGTTTTTCTTGGATATT-GGGCATATTTGATAACCTATA-GCTAATAGCCAATA-GATGGTTTCTGTT-TTCTTT---GTC-T--GTCGTT--G-TGG--AGGTGAAA--TTTG-TCGCAA-gataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaagttgatttagattgattggtttagtaccacttgtactccattcggtttgcaccatttgtgctgtcaatatttacatcgtgaatttgacatgttgctttcttggcatttgtgaattcagggcaccatttgtgcctctacttgatttagtggataacactgtgaatttgacatgttgctttcttggcatttgtgaatttagggcaccatttgtgcctctacttgatttattggaacacattgtgaatttgacatgttgatttcttggcgtttgtgaatttagggcaccatttgtgcctccacttgatttattggaaaaattctttagggcaccatttgtgcctgagccgcttgatttgttggaaaatttacttggctgcaaaattgtcgccccattggaaaaattcactgggctgcaaaattgccgccccattcaatgtgtggcggatgggtcaatcgacgttgtctattgcctcatttggcataattttgcatagttggctgtctccagggggcactgttttttccaggtcccctgggccaagatggtatttctatgcttaattcatatgctgccaattgtttcatcggcgcatacaaaaattcatttgttgatatatattaaatggccatgacaaacataatgactcgtgtttttcttggatattgggcatatttgataacctatagctaatagccaatagatggtttctgttttctttgtctgtcgttgtggaggtgaaatttgtcgcaa
gi|4 : atttgtgctgagattttacagtgccatttccactagttaatttactatttgttatttgctttgtataatggtaccagttgtatctgattttgcaccagttggataatttctttaagtcgagcttttctaagccaacatttccttgatcaacaatttgtgggatgattgttatgtgccaacttgtgaaactgttgtgtataaagccaaatttatgtagcattggtaaccatttacatgcatatggtccttaATAGTTGATAACCTATACGCC--TATCCGGTA-GGTA---TCAGTT-TCTTTT---GTTCT--GTCGTC--GGTGGGAAGGTGAAATTTTTT-TCGCAATCATAATTAG-GATTTACGCAC--ATGGGGTTCAAATT-AAACGTGGTTTATTTAGCGCAAGCTAA---A--TTATGTATATTT-GTT-A-GGCAACATAGTAAGGTGGTA-ACGAAACAATTA-CG-CCGGGTCTTCGGACTCTTCGCTGTAGG-TGGTGCATCTCGCGCTCATTGTTTACAAGATCAG-TCGTCCCTTTGCACTTTGTCCGATACTTCGCAAGTAGA-GCAGAC-TTATAGTATTTTCGATACCACTCCTTCCCTCCCCTTTG-ATTTAAGTTTGCTAGCCTTGGTTGGC-TTTG---C-TTTT-CG-TTTA-----TCATCGT-CA---TTCCTCATGACT
gi|5 : atCATGCTTATGA-ATAGTTAGCTGTCTCCAGTGGAGGTCACGTG---TTTTTTTGTGCA-GGTCCCGCTGGGTCAAAGATCAGAGGTACTTGCAGTGCTT-----AAT--TTATATTAGCTGTGCC-AA-TAT-TGTTTC-AGGTTCGGCGG-CATTGACAAAA--TCATTGTCTGTCTAGAGTAGTTAAT-TTATGTA--AACATGGCCATGAGCACGCAC-GCACAAAGCAATGACATGGCCTCGATGTGCTATGCTTTTTGACT-TG--------GA-ATTTATGGGCATATTTTGTA--ACCTCAGTAGGCATCAATAGGT--GTTTCTGTTCTC-T--ATTTtctattatgtcaatgtattggtgatacatatcacctgtattcgtatttattcgtcatttcatagcgggctggc
gi|6 : CCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTTGAAATAAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-CAT--ACAAAAATTAATT-T------------GTTGAT-ATATATT--AA-ATGGCCATGG-CAAACAC-GC-CAAA-C-ATAATATGA-CTCG--------TGTTTTT---CT-TG--------CACAT---TGGGCATATTTGATT--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTTTC-TTAATTTGTC-GTTGTGGA-GGTGA-AA-TTTGTCG-CAAAATAtgatctacgttgc
gi|8 : -GGCATAACTTTGC-ATAGTTTGCTCTCTCC---AGGGG-CAC-TG---TTTT-TC---CA-GGTCCC-CCGGGCC-AAGAT----TGCATTTCTA-TGCTT-----AAT--TGATAT--GC--TGCC-AA---T-TGTTTG-A---TCAGT-G-CAT--ACAGAAATTAATT-T------------GCTG-T-ACATATT--a
gi|8 : actTTTG---CTGTA--------CATAT---TGGGCATATTTGATA--ACCT-AGTAG---CCAATAGGTG-GTTTCTGTTCTCTTTTGTCTGTC-GTCGTGGA-GGTGG-AA-TTTGTCG-CAAAATgggcatatttgataacctagtagccaataggtggtttctgttctcttttgtctgtcgtcgtggaggtggaatttgtcgcaaaat
gi|9 : actggcataactttgcatagtttgctctctccaggggcactgtttttccaggtcccccgggccaagattgcatttctatgcttaattgatatgctgccaattgtttgatcagtgcatacagaaattaaAGTTTGCTGTCTCC---AGGGGGCAC-TG---TTTTTTC---CA-GGTCCC-CTGGGCC-AAGAT----GGTATTTCTA-TGCTT-----AAT--TTATAT--GC--TGCC-AATTTT-TGTTTC-A---TCGGC-G-TAT--ACAAAAATTCATT-T------------GTTGAT-ATATATTAAAA-ATGGCAATGA-CAAACAC-GC-C----C-ATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
Unaligned ( gi|16 ): TAATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC
Unaligned ( gi|17 ): GGTTGTTGTTGTTTTTTTTTATATCATGTTTATTTCCAAAACCTATAT
Unaligned ( gi|18 ): AATAGAAATGGCACTCAATCAGTGTATATGTCCCGGGTTTTCAACGC