lowQualScore : 2222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 4 4 55 333333 22 44 1 333 1 2 4 666 0000000000000000000000000000000000000000000000000 1 22 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 88888888888888888888
lowQualScore : 0 0 55 666666 44 33 5 333 88 5 0 0 222 2222222222222222222222222222222222222222222222222 0 2 9 888 55 6 6 99 6 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 00000000000000000000
lowQualScore : . . .. ...... .. .. . ... .. . . . ... ................................................. . . . ... .. . . .. . . .................................................................................................................................................................................................................................................................................................................................. ... ....................
lowQualScore : 0 0 00 000000 00 00 5 000 55 5 0 0 555 2222222222222222222222222222222222222222222222222 0 2 8 444 88 7 7 22 7 7 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 777 22222222222222222222
consensus : NTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAAGCAGAANACGTGTTTCAGAATTATCGGTAAANTAGGGAAATATTTATATAAGATG-TTCAAGTATTGAGAACAGAAAGCGTATAAA---A-GCTGAGGT-TC--GCTAATTNACCGANCATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA-AT--GGT-ATCTTGT-A---A--AACANCAGCN---TATGAA-T-CGTGTCGGAGT--AGGCTG-TGCCGT--GT---ATACATTAC-CTGCATTGTATTTA-AT--ATTTTATGT------AT-AAAC-CTATG-TTAT----A--A-TG--TCTG--TGTT-----T-A----------T---CCATAAA-T-------ATGTCAAAACGTTAA----CC-TAT-GACNGTATAGTTCTTTT---GGGTA----ATATAN-CA-A--T---AC-ATACATTNTTTANAT-ANT-----TT----A--GAA----------------N-TCC----GGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------GGGGGGGGGGGGGGGGG
Reference ( gi|1 ) : TTTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACAAA-TACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG---TGAGAACAGA---CATACACACCCATACTGAGCTATCATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGT-ATA-AT--GGT-ATCTTAT-AC-TA--AACATCAGTT---TATG-A-T-CGTGTCGGAGTGGAGGCTG-TGCCATAAGT---ATACATTAC-CTGCA-TGTATTTA-AT--ATCTTATGT------AT-AAAC-CTATG-TTAT----A--ATTG--TCTG--TATT-----T-A----------T---CCATAAA-TAA-----ATGTCAAAAC-TTAA----CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATAT-CA-A--T---AC-ATACATTATTTACAT-ACT-----TT----A--GAA----------------T-TCC----GGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGT---------------GGGGGGGGGGGGGGGGG
gi|19 : TTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATC-AACAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTA-TGAGAACAGA---AAT
gi|2 : TATTG--ATCAAGCAGA-AACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATAAA---A-GCTGAGGT-TC--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA-AT--GGT-ATTTTGTAAA-GA--AACAGCAA-A---TATG-A-TATATGTC-CAGTACA---T--TACC----------TACATTAC-ATTTACTGTATT---AT--AT-TTATGTTACGGAAT-AA---CTATGTTTAT----C--A-TG--T-----TGTT-----T-A----------T---TTAT-AC-T-------ATGTAAGAACGTTAA----CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AA-CA-A--T---ACAATACA
gi|6 : gT--TTA-CCAAC-ATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA-AT--GGT-ATTTTGT-AAAGA--AACAGCAACA---TATG-AAT-CATGTC-----------------CAT---T----TACATTAC-CTACA-T-----TA--C--ATTGTATGT------AT-TTAT-TTATG-TTAC----G--AATA--ACTA--TGTT-----T-A----------T---a
gi|18 : gaaaggcgtatataaagctgaggttatcctcaaa----ATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA-AT--GAT-ATTTTGT-A---A--AGAAACAGCTACATATGAA-T-CATGTCatgtctgt
gi|9 : caactttacgcatttatgtattTGTTTTGTATTC-ATTATA--ACAAACTA--T-ATA-AT--GCT-ATCTCAT--------AACATCATTT---AATcatttactttaccttacctacattacattgt
gi|14 : attgTATATTACA---AAC-T-ATA-AT--GGT-ATCTTAT-A--TA--AACATCAGTTA--TATGAA-T-CGTGTCGGAGT-GAGGCTG-T-CCAT--GT---ATACCTTAC-CTGCATTGTATTTA-AT-----TTATGT------ATAAAAC-CTATGTTTAT----A----TG--TCTG----TT-----T-A----------T---CCAT-AA-T-------ATGTCAAAAacattcttttacattgcctgcattgtatttattttatgtacaatctatgtttatatctctatttatactatgtaaaaacgttaatcatataaactgtatagttcttgctaataaatacgatacaa
gi|3 : ATTCATCGT-GTAGATCCGGTTATCT-AT--C-TAGGAACATCAGCC------G-----CG-GTTGGA----AGGCCGCTGCCGCGAGTCAGATATATTTT-TTGAG-T-CATTAA-ATTTACTTTATAT------AT-ATACACTGTG-TGATCGGAA--ATCA--ACAA--TATT-----TTAGGCTTCTTGTT---CTACAAG-TAC-----ATAGCA-----TTA--------TAT--ATCGTACTTTTTTTTT------TT----TTTTAA-CA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCAGCA--GTA----------------TATTG----GGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------GGGGGGGGTGGGG
gi|9 : TACATTGC-CTGCATTGTATT----T--ATTTTATGT------AC--AAT-CTATG-TT-T----A----TA--TCTC--TATT-----T-A----------T---AC-T------------ATGTAAAAACGTTAA----TCATATAAACTGTATAGTTCTT------GCTA----ATA-----A-A--T---ACGATACA
gi|23 : attgtgttttgtattcattataacaaactatataatgctatctcataacatcatttaatacattctttTACATTACATTGTA-TGTATTTATTT--ATGTTACGA------AT-AA---CTATG-TTAT----A----TG--TCTGTTTATT-----T-a
gi|11 : taaagaaaccagcttacattcgaattaatgtccatttaccttacc-TTAT----AGTATTGAACATG--TATTCCCCTT-A----------T---TGACAAA-TAGGCAACATTTCAA----TTAATATACC-CAT--ACGGTATA------TT---GGGCAGGAAACATAC-GACA--T---GC-ATAAATTGTTTGGATTAGT-----TT----G--GAA----------------G---C----GGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGG
gi|8 : ttactatctatcttttctttgtCTA--CGTT-----T-A----------TACACCATAAACTTG-----AT-TTAAAAT-CTAAATG-CA-TAT-G-CAGGA-AGATTTTTA---AGAT------TATGT-TA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC----A--AGA----------------G-TCC----GGGGAG---GGGGGAGGGG--GGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGG
gi|5 : cA-----AGGTCAAATCATTCA----CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTT-AG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT----ACTGAA----------------T--------GGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------GGGGGGGGGGGGGGGGGgggg
gi|4 : TTT---GAATA----ATCTAC-TA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T-----A--GAAAGTAATGTCGCCTAAGC-TCCTAGTGGCGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------GGGGGGGGGGGGGGGGGggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|15 : tgaaa----ATGTATTCA-A--T---AA-CTGGAGTATTT------CT-----TT-------GAA--------------------C----AGGGGC---GGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------GGGGGGGGGGGGGGgggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|21 ): GTCCATTGTAACCTTACCTGCATTGCATTTATTAATTGCACAACTCATGTTTATATTTCTTTATTCAAGCTGTGTAAAAACGTCAAATATATCGTTCTTGGTAATAAATAATACAATA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|25 ): AAAAAATCAGCAACTCGAATCGTGTCCATTTGCCTTACCTACATTGCACTGTATGTATTTATTTACTATGTTTATTTACTATATTTA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|27 ): ATTTTGTAAAGAAACAGCTACATATGAATCATGTTCATTTACCTTACCTACGTTACATTGTATGTATTTATTTATGCTA
Unaligned ( gi|28 ): TAACTATGTTTATATGTATGTTTATTTATGTAAAAACCTTAAACATATGGACTTGGTAATAAACAATACAATACA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 2 22 22 1 1 1 111 111 2 1 222 33333333 33333333 1 1 2222 22222222 11 6666666666666666666666666666666 333333333333 33333333333333 44444444444444444 22222 111111111 11111 22222 222222 1111 111111 6666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 0 77 22 2 2 4 222 7 777 1 7 3 3 111 44 11111111 66666666 7 1 2 77 3 8 3 1 6 99 5555 1 33333333 44 3333333333333333333333333333333 4 777 444444444444 00000000000000 5 77777777777777777 33333 0 5 777777777 1 66 66 0 66 5 2 44444 55555 0 666 111111 9999 1111 4 66 333333 1 1 1 6 6666666666666666666666666666666666666 1 999999 44444444 444
lowQualScore : . . .. .. . . . ... . ... . . . . ... .. ........ ........ . . . .. . . . . . .. .... . ........ .. ............................... . ... ............ .............. . ................. ..... . . ......... . .. .. . .. . . ..... ..... . ... ...... .... .... . .. ...... . . . . ..................................... . ...... ........ ...
lowQualScore : 5 0 55 77 0 0 0 333 3 000 0 3 3 3 777 00 00000000 00000000 3 0 0 77 2 0 2 4 7 22 0000 0 88888888 00 0000000000000000000000000000000 4 888 999999999999 99999999999999 0 55555555555555555 44444 2 0 222222222 9 99 11 1 11 4 2 66666 00000 1 888 777777 4444 8888 4 11 666666 4 0 0 7 8888888888888888888888888888888888888 0 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGTGTTTCAGAATTATCGGTAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTA-TGAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACATCAG---C--N-TATGA-ATCGTGTCGGAGT--AGGCTG-TGCCAT--G--T---ATACATTAC-CTG---CATTGTATT-TA-NT-AT---TTTATGT------AT-AAAC-CTATG-TTAT-----------ATA-TGTCT---GTGT-TTAT---CC-ATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAAGCAGAANACGTGTTTCAGAATTATCGGTAAANTAGGGAAATATTTATATAAGATG-TTCAAGTATTGAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTNACCGANCATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACANCAG---C--N-TATGA-ATCGTGTCGGAGT--AGGCTG-TGCCGT--G--T---ATACATTAC-CTG---CATTGTATT-TA-AT-AT---TTTATGT------AT-AAAC-CTATG-TTAT-----------A-A-TGTCT---GTGT-TTAT---CC-ATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACNGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAN----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG---TGAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACT-AAACATCAG---T--T-TATG--ATCGTGTCGGAGTGGAGGCTG-TGCCATAAG--T---ATACATTAC-CTG---CA-TGTATT-TA-AT-AT---CTTATGT------AT-AAAC-CTATG-TTAT-----------A-ATTGTCT---GTAT-TTAT---CC-ATAAATAAATG--TCAA--AAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tAAC--ATT--TCAATTAATAT--A--CC-CAT--ACGGTATA------TT---GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG--------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcTACAAACT-ATA--ATGGTATCTTATAT--AAACATCAG---T--TATATGA-ATCGTGTCGGAGTG-AGGCTG-T-CCAT--G--T---ATACCTTAC-CTG---CATTGTATT-TA-A-------TTTATGT------ATAAAAC-CTATG-TT-T-----------ATA-TGTC-----TGT-TTAT---CC-AT-AAT--ATG--TCAA--AA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTA---AAGAAACAGCTAC--A-TATGA-ATCATGTCCATTT--A--CTT-TACCTT--A--C---CTACATTA--------CATTGT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATAC--GTTTCAGAATTAT--GTAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTA-TGAGAACAGAAA
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AAGAAACAG---CAAA-TATGATAT-ATGTC-CAGT--A--CAT-TACC------------TACATTAC-ATT---TACTGTATT----AT-A----TTTATGTTACGGAAT-AA---CTATGTTTAT-----------C-A-TGT------TGT-TTAT---TT-AT-ACT--ATG--TAAG--AACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gT--G--T---A-ACCTTAC-CTG---CATTGCATT-TA-TT-AA---T---TGC------AC--AAC-TCATG-TT-T-----------ATA-TTTC-------T-TTAT---TC-A-AGCT--GTG--TAAA--AACGTCAA------AT-----ATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : gtccatTACATTACATTG---TAT-GTATT-TA-TTTAT---GTTACGA------AT-AA---CTATG-TTAT-----------A---TGTC-----TGT-TTAT---ata
gi|3 : taaagaaaccagcttacattcgaattaatgtccatttaccttaccTATCTAG-----GAACATCAG---C--C----G----CG-GTTGGA----AGGCCGCTGCCGC--GAGTCAGATATATTTT-TTGAGTCATTAAATT-TA-----C---TTTATAT------AT-ATACACTGTG-TGATCGGAAATCAACA-A-TATTTTAGGCTTCTTGT---TCTACAAGT--A-----CAT--AGCATTA------TAT--ATCGTACTTTTTTTTT------TT----TTTTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGGtt
gi|4 : attcatcgtgtagatccggttatcTTT---GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAA--ATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAAT----------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTAAAGAAACAGCAA---C--A-TATGA-ATCATGT-----------------CCAT-----T----TACATTAC-CTA---CATTACATTGTATGT-ATTTATTTATGTTACGA-AT-AA---CTATG-TT-T-----------ATA-TGTCT---GTggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaCT---ACGT-TTATACACC-ATAAAC--TTGATTTAA--AATCTAAATGCA-TAT-G-CAGGA-AGATTTTTA---AGAT------TATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCAT-----AACATCA
gi|9 : TACATTGC-CTG---CATTGTATT-----T-AT---TTTATGT------AC--AAT-CTATG-TT-T-------------A-TATCT---CTAT-TTAT---AC------T--ATG--TAAA--AACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACAtttaatacattcttttacattgcctgcattgtatttattttatgtacaatctatgtttatatctctatttatactatgtaaaaacgttaatcatataaactgtatagttcttgctaataaatacgatacaa
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|25 ): AAAAAATCAGCAACTCGAATCGTGTCCATTTGCCTTACCTACATTGCACTGTATGTATTTATTTACTATGTTTATTTACTATATTTA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|27 ): ATTTTGTAAAGAAACAGCTACATATGAATCATGTTCATTTACCTTACCTACGTTACATTGTATGTATTTATTTATGCTA
Unaligned ( gi|28 ): TAACTATGTTTATATGTATGTTTATTTATGTAAAAACCTTAAACATATGGACTTGGTAATAAACAATACAATACA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 1 11 22 1 1 22 22 1 1 1 33333333 33333333 1 1 3333 1111 11 99999999999999999999999999999999999 111111111 2222222222222 11111111111111 444444444444444 11 222222222 11111 222 222222 1111 111111 66666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 77 7 77 7 3 3 7 3 44 11111111 66666666 7 2 6 3 8 3 1 6 99 5555 1 6666 00 3 33333333333333333333333333333333333 4 777 777777777 8888888888888 88888888888888 444444444444444 5 1 77 222222222 1 66 66 0 66 5 2 44444 000 0 666 111111 9999 1111 4 66 333333 1 1 1 6 77777777777777777777777777777777777777 999999 44444444 444
lowQualScore : . . .. .. . . . .. . .. . . . . . .. ........ ........ . . . . . . . . .. .... . .... .. . ................................... . ... ......... ............. .............. ............... . . .. ......... . .. .. . .. . . ..... ... . ... ...... .... .... . .. ...... . . . . ...................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 00 3 3 3 3 3 00 00000000 00000000 3 0 7 2 0 2 4 7 22 0000 6 8888 55 2 77777777777777777777777777777777777 4 888 888888888 4444444444444 44444444444444 444444444444444 0 4 44 111111111 9 99 11 1 11 4 2 66666 999 1 888 777777 4444 8888 4 11 666666 4 0 0 7 88888888888888888888888888888888888888 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATC-GTAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACATCAGC--N-TATGAATCGTGTCGGA-T--AGGCTG-TG-CCAT--G--T---A---TACATTAC-CTG---CAT---------TGTATTTA-NT-AT------TTTATGT------AT-AAAC-CTATGTT-T------------AT-ATGTCT-TGTTTAT----CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGTGTTTCAGAATTATCGGTAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACATCAGC--N-TATGAATCGTGTCGGAGT--AGGCTG-TG-CCAT--G--T---A---TACATTAC-CTG---CAT---------TGTATTTA-NT-AT------TTTATGT------AT-AAAC-CTATGTTAT------------AT-ATGTCTGTGTTTAT----CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATT-GTAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG--T-GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACT-AAACATCAGT--T-TATG-ATCGTGTCGGAGTGGAGGCTG-TG-CCATAAG--T---A---TACATTAC-CTG---CA----------TGTATTTA-AT-AT------CTTATGT------AT-AAAC-CTATGTTAT------------AA-TTGTCTGTATTTAT----CCATAAATAAATG--TCAA--AAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tAAC--ATT--TCAATTAATAT--A--CC-CAT--ACGGTATA------TT---GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG---------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcTACAAACT-ATA--ATGGTATCTTATAT--AAACATCAGT--TATATGAATCGTGTCGGAGTG-AGGCTG-T--CCAT--G--T---A---TACCTTAC-CTG---CAT---------TGTATTTA-A----------TTTATGT------ATAAAAC-CTATGTT-T------------AT-ATGTC--TGTTTAT----CCAT-AAT--ATG--TCAA--AA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTAAAGAAACAGCTAC--A-TATGAATCATGT------------------CCAT--T--T---ACTTTACCTTAC-CTA---CAT---------TACATT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT--GTAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAgt
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AAGAAACAGCAAA-TATGA------------T--A---TA-TGTCCA----------G---TACATTAC-CTA---CAT---------TACATTTA-CT-GTATTATATTTATGTTACGGAAT-AA---CTATGTT-T------------ATCATGT---TGTTTAT----TTAT-ACT--ATG--TAAG--AACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : g-CCATT-G--T---A----ACCTTAC-CTG---CAT---------TGCATTTA-TT-AA------T---TGC------AC--AAC-TCATGTT-T------------AT-ATTTC----TTTAT----TCA-AGCT--GTG--TAAA--AACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : gt---TACATTACATTG---TAT----------GTATTTA-TTTAT------GTTACGA------AT-AA---CTATGT--T------------AT-ATGTC--TGTTTAT----ata
gi|3 : taaagaaaccagcttacattcgaattaatgtccatttaccttaccTATCTAG-----GAACATCAGC--C----G---CG-GTTGGA----AGGCCGCTG-CCGC--GAGTCAGA---TATATTTT-TTGAGTCAT---------TAAATTTA-CT----------TTATAT------AT-ATACACTGTGTGATCGGAAATCAACAAT-AT-TTTAGGCTTCTTGTTCTACAAGT--A-----CAT--AGCATTA------TAT--ATCGTACTTTTTTTTT------TT----TTTTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGGtt
gi|4 : attcatcgtgtagatccggttatcTTT---GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAA--ATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA----------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTAAAGAAACAGCAAC--A-TATGAATCATGT------------------CCAT-----T-------TACATTAC-CTA---CATTACATTGTATGTATTTATTT-AT------GTTACGA------AT-AA---CTATGTT-T------------AT-ATGTCTGTggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaCTACGTTTATACA-CCATAAAC--TTGATTTAA--AATCTAAATGCA-TAT-G-CAGGA-AGATTTTTA---AGAT------TATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCAT-----AACATCA
gi|9 : ---TACATTGC-CTG---CAT---------TGTATT----T-AT------TTTATGT------AC--AAT-CTATGTT---------------T-ATATCTCTATTTAT----AC-----T--ATG--TAAA--AACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACAtttaatacattcttttacattgcctgcattgtatttattttatgtacaatctatgtttatatctctatttatactatgtaaaaacgttaatcatataaactgtatagttcttgctaataaatacgatacaa
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|25 ): AAAAAATCAGCAACTCGAATCGTGTCCATTTGCCTTACCTACATTGCACTGTATGTATTTATTTACTATGTTTATTTACTATATTTA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|27 ): ATTTTGTAAAGAAACAGCTACATATGAATCATGTTCATTTACCTTACCTACGTTACATTGTATGTATTTATTTATGCTA
Unaligned ( gi|28 ): TAACTATGTTTATATGTATGTTTATTTATGTAAAAACCTTAAACATATGGACTTGGTAATAAACAATACAATACA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 22 1 1 22 111 1 1 1 33333333 33333333 1 1 333 11111111111111111111111111111111111111111111111111 222222222 22222222222 11111111111111 333333333333333333 222222 2222222222222 333333333333333333333333333333 1111 111111 777777777777777777777777777777777777777777 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 7 3 44 11111111 66666666 7 2 6 3 8 3 1 6 99 333 1 99999999999999999999999999999999999999999999999999 888 000000000 88888888888 77777777777777 666666666666666666 5 66 000000 4444444444444 55 1 55 6 1 555555555555555555555555555555 8888 2222 4 55 444444 0 1 1 6 666666666666666666666666666666666666666666 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . . . .. ........ ........ . . . . . . . . .. ... . .................................................. ... ......... ........... .............. .................. . .. ...... ............. .. . .. . . .............................. .... .... . .. ...... . . . . .......................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 3 3 00 00000000 00000000 3 0 7 2 0 2 4 7 22 666 6 44444444444444444444444444444444444444444444444444 888 000000000 33333333333 66666666666666 999999999999999999 0 99 888888 3333333333333 55 6 55 4 0 888888888888888888888888888888 5555 8888 0 55 333333 1 0 0 7 777777777777777777777777777777777777777777 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACATCAGC--A-TATGAATCGTGT-GGA-T--AGGCTG-T-CCAT--G--T---A---TACATTACCTG---CAT---------TGCATTTA-NTAT------TTTATGT------AT-AAAC-CTATGT------------------TTAT-A--TG--TCT-TGTTTAT---CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAA------GTC-----------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACATCAGC--N-TATGAATCGTGTCGGA-T--AGGCTG-TGCCAT--G--T---A---TACATTACCTG---CAT---------TGTATTTA-NTAT------TTTATGT------AT-AAAC-CTATGT------------------TTAT-A--TG--TCT-TGTTTAT---CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAA------GTC-----------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG--T-GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACT-AAACATCAGT--T-TATG-ATCGTGTCGGAGTGGAGGCTG-TGCCATAAG--T---A---TACATTACCTG---CA----------TGTATTTA-ATAT------CTTATGT------AT-AAAC-CTATG-------------------TTAT-AATTG--TCTGTATTTAT---CCATAAATAAATG--TCAA--AAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAA------TTC-----------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tAAC--ATT--TCAATTAATAT--A--CC-CAT--ACGGTATA------TT---GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAA------G-------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcTACAAACT-ATA--ATGGTATCTTATAT--AAACATCAGT--TATATGAATCGTGTCGGAGTG-AGGCTG-T-CCAT--G--T---A---TACCTTACCTG---CAT---------TGTATTTA-A---------TTTATGT------ATAAAAC-CTATGT------------------TTAT-A--TG--TC--TGTTTAT---CCAT-AAT--ATG--TCAA--AA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTAAAGAAACAGCTAC--A-TATGAATCATGT-----------------CCAT--T--T---ACTTTACCTTACCTA---CAT---------TACATT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAgt
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AAGAAACAGCAAA-TATG-AT--------A-T--A---TG-T-CCA----------G---TACATTACCTA---CAT---------TACATTTA-CTGTATTATATTTATGTTACGGAAT-AA---CTATGT------------------TTATCA--TG----T-TGTTTAT---TTAT-ACT--ATG--TAAG--AACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gCCATT-G--T---A----ACCTTACCTG---CAT---------TGCATTTA-TTAA------T---TGC------AC--AAC-TCATGT------------------TTAT-A--TT--TC----TTTAT---TCA-AGCT--GTG--TAAA--AACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|28 : gt-CTATGT------------------TTAT-A--TG--TA--TGTTTAT---T------T--ATG--TAAA--AACCTTAA----------AC-ATATGG-ACTT------GGTA----ATA-AACA-A--T---ACAATACAata
gi|3 : taaTATCTAG-----GAACATCAGC--C----G---CG-GTTGGA----AGGCCGCTGCCGC--GAGTCAGA---TATATTTTTTGAGTCAT---------TAAATTTA-CT---------TTATAT------AT-ATACACTGTGTGATCGGAAATCAACAATATTTT-A--GGCTTCT-TGTT------CTACAAGT--A-----CAT--AGCATTA------TAT--ATCGTACTTTTTTTTT------TT----TTTTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCA------GTA-----------------TATTGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatcTTT---GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCTCCTAGTGGCGGGCGCGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAA--ATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA--------------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGgggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTAAAGAAACAGCAAC--A-TATGAATCATGT-----------------CCAT-----T-------TACATTACCTA---CATTACATTGTATGTATTTATTTAT------GTTACGA------AT-AA---CTATGT------------------TTAT-A--TG--TCT-ggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaGTTTATACACCATAAAC--TTGATTTAA--AATCTAAATGCA-TAT-G-CAGGA-AGATTTTTA---AGAT------TATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGA------GTC-----------------CGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGGgt
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCATA---A--CAT---C--A-T-TTAAT--------A-C--ATTCTT-T------------------TACATTGCCTG---CAT---------TGTATT----TAT------TTTATGT------AC--AAT-CTATGT------------------TTAT-A--TC--TC--TATTTAT---AC-----T--ATG--TAAA--AACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACA
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|23 ): TAAAGAAACCAGCTTACATTCGAATTAATGTCCATTTACCTTACCTACATTACATTGTATGTATTTATTTATGTTACGAATAACTATGTTATATGTCTGTTTATTT
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|25 ): AAAAAATCAGCAACTCGAATCGTGTCCATTTGCCTTACCTACATTGCACTGTATGTATTTATTTACTATGTTTATTTACTATATTTA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|27 ): ATTTTGTAAAGAAACAGCTACATATGAATCATGTTCATTTACCTTACCTACGTTACATTGTATGTATTTATTTATGCTA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 22 1 1 22 111 1 1 1 33333333 33333333 1 1 222 222222222222222222222222222222222222222222222222222222 555555555555555555555555555555555555555 222222222222222222 22 2222222222222 333333333333333333333333333333 1111 111111 666666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 7 3 44 11111111 66666666 7 2 6 3 8 3 1 6 99 999 0 0 666666666666666666666666666666666666666666666666666666 3 777 555555555555555555555555555555555555555 999999999999999999 4 66 66 55 2222222222222 55 1 55 6 1 555555555555555555555555555555 8888 2222 4 55 444444 0 1 1 6 777777777777777777777777777777777777777 1 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . . . .. ........ ........ . . . . . . . . .. ... . . ...................................................... . ... ....................................... .................. . .. .. .. ............. .. . .. . . .............................. .... .... . .. ...... . . . . ....................................... . ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 3 3 00 00000000 00000000 3 0 7 2 0 2 4 7 22 444 2 2 555555555555555555555555555555555555555555555555555555 0 000 888888888888888888888888888888888888888 555555555555555555 0 11 11 33 6666666666666 55 6 55 4 0 888888888888888888888888888888 5555 8888 0 55 333333 1 0 0 7 777777777777777777777777777777777777777 0 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCTA-TA--ATGGTATCTTGTA---AAACATCAGC-A--TAT-GAATCGTG--T-GGA-T--AGGC---TGT-C-CAT--GT---A---TACNTTACCTG---CATTGCATT-TA-N-TAT------TT---TATGT------AT-AAAC-CTATGT------------------TTAT-A--TG--TC--TGTTTAT---CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAA--G----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCTA-TA--ATGGTATCTTGTA---AAACATCAGC-A--TAT-GAATCGTG--T-GGA-T--AGGC---TGT-C-CAT--GT---A---TACATTACCTG---CATTGCATT-TA-N-TAT------TT---TATGT------AT-AAAC-CTATGT------------------TTAT-A--TG--TCT-TGTTTAT---CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAA--G----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG--T-GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGTA-TA--ATGGTATCTTATACT-AAACATCAGT-T--TAT-G-ATCGTG--TCGGAGTGGAGGC---TGTGC-CATAAGT---A---TACATTACCTG---CA-TGTATT-TA-A-TAT------CT---TATGT------AT-AAAC-CTATG-------------------TTAT-AATTG--TCTGTATTTAT---CCATAAATAAATG--TCAA--AAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAA--T----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tAAC--ATT--TCAATTAATAT--A--CC-CAT--ACGGTATA------TT---GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAA--G--------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcTACAAACTA-TA--ATGGTATCTTATAT--AAACATCAGTTA--TAT-GAATCGTG--TCGGAGTG-AGGC---TGT-C-CAT--GT---A---TACCTTACCTG---CATTGTATT-TA-A----------TT---TATGT------ATAAAAC-CTATGT------------------TTAT-A--TG--TC--TGTTTAT---CCAT-AAT--ATG--TCAA--AA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCTA-TA--ATGATATTTTGTAAAGAAACAGCTAC-A--TAT-GAATCA--------------------TGT-C-CAT--TT---ACTTTACCTTACCTA---CATTACATT-
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAgt
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AAGAAACAGC-AAATAT-GA--------T---A-T--A------TGT-C-CA--------G---TACATTACCTA---CATTACATT-TA-C-TGTATTATATT---TATGTTACGGAAT-AA---CTATGT------------------TTATCA--TG--T---TGTTTAT---TTATAC-T--ATG--TAAG--AACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gGT-C-CATT-GT---A----ACCTTACCTG---CATTGCATT-TA-T-TAA------T------TGC------AC--AAC-TCATGT------------------TTAT-A--TT--TC----TTTAT---TCA-AGCT--GTG--TAAA--AACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : ---TGT-C-CAT---T-------TACCTTACCTA---CATTACATTGTA-TGTAT------TTATTTATGTTACGA-AT-AA---CTATGT------------------T-AT-A--TG--TC--TGTTTAT---ata
gi|25 : taaagaaaccagcttacattcgaattaaA---AAAAATCAGC-A--ACTCGAATCGTG--T-------------------C-CAT---T-------TGCCTTACCTA---CATTGCACT----G-TATGTA---TT---TATTT------A-------CTATGT------------------TTAT-tt
gi|28 : -CTATGT------------------TTAT-A--TG--TA--TGTTTAT---T------T--ATG--TAAA--AACCTTAA----------AC-ATATGG-ACTT------GGTA----ATA-AACA-A--T---ACAATACAttactatattta
gi|3 : taaTATCTAG-----GAACATCAGC------------CGCGGTT-GGA----AGGCCGCTGC-CGCGA--GTCAGA---TATATTTTTTGAGTCATTAAATT-TA-C-T---------T---TATAT------AT-ATACACTGTGTGATCGGAAATCAACAATATTTT-A--GGCTTCT-TGTT------CTACAAGT--A-----CAT--AGCATTA------TAT--ATCGTACTTTTTTTTT------TT----TTTTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCA--G----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatcTTT---GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAA--AGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAA--ATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAATGG----------------G---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCTA-TA--ATGGTATTTTGTAAAGAAACAGCAAC-A--TAT-GAATCA--------------------TGT-C-CAT---T-------TACATTACCTA---CATTACATTGTATG-TATTTA---TT---TATGTTACGA-AT-AA---CTATGT------------------TTAT-A--TG--TCT-aggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaGTTTATACACCATAAAC--TTGATTTAA--AATCTAAATGCA-TAT-G-CAGGA-AGATTTTTA---AGAT------TATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGA--G----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGGgt
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACTA-TATAATGCTATCTCATA---A--CATCA------T-T-TAAT----------A-C--ATTC---TTT-----------------TACATTGCCTG---CATTGTATT------TAT------TT---TATGT------AC--AAT-CTATGT------------------TTAT-A--TC--TC--TATTTAT---AC-----T--ATG--TAAA--AACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACA
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|27 ): ATTTTGTAAAGAAACAGCTACATATGAATCATGTTCATTTACCTTACCTACGTTACATTGTATGTATTTATTTATGCTA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 1 1 11 22 1 1 22 111 1 1 1 33333333 33333333 1 1 333 1111 111111111111111111111111111111111 66666666666666666666666666666666666666 2222222222222 333333333333333333333333333333 1111 111111 66666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 7 3 44 11111111 66666666 7 2 6 3 8 3 1 6 99 333 1 1 1111 1 5 888888888888888888888888888888888 1 11111111111111111111111111111111111111 4 66 66 9999999999999 66 2 66 6 2 444444444444444444444444444444 9999 2222 4 55 444444 0 1 1 6 77777777777777777777777777777777777777 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . . . .. ........ ........ . . . . . . . . .. ... . . .... . . ................................. . ...................................... . .. .. ............. .. . .. . . .............................. .... .... . .. ...... . . . . ...................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 3 3 00 00000000 00000000 3 0 7 2 0 2 4 7 22 666 6 7 7777 4 7 888888888888888888888888888888888 0 11111111111111111111111111111111111111 4 99 11 4444444444444 11 9 11 5 2 222222222222222222222222222222 4444 8888 0 55 333333 1 0 0 7 88888888888888888888888888888888888888 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCTA-TA--ATGGTATCTTGTA---AAACATCAGC-A--TAT-GAATCGTGT---A-T--A--CTGT-CCAT---TA---TACCTTACCTGCATTGCATT-TA-N-TAT-T----TT---TATGTTACG--AT-AAACCTATGTTTAT-A--TGTCTG--TTTAT---CCATAAAT--ATG--TNAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCTA-TA--ATGGTATCTTGTA---AAACATCAGC-A--TAT-GAATCGTGT-GGA-T--AGGCTGT-CCAT--GTA---TACNTTACCTGCATTGCATT-TA-N-TAT------TT---TATGT------AT-AAACCTATGTTTAT-A--TGTCTG--TTTAT---CCATAAAT--ATG--TCAA--AACGTTAA--CC-TAT-GACTGTATAGTTCTTTT---GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG--T-GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGTA-TA--ATGGTATCTTATACT-AAACATCAGT-T--TAT-G-ATCGTGTCGGAGTGGAGGCTGTGCCATAAGTA---TACATTACCTGCA-TGTATT-TA-A-TAT------CT---TATGT------AT-AAACCTATG-TTAT-AATTGTCTGTATTTAT---CCATAAATAAATG--TCAA--AAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tAAC--ATT--TCAATTAATAT--A--CC-CAT--ACGGTATA------TT---GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG---------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcTACAAACTA-TA--ATGGTATCTTATAT--AAACATCAGTTA--TAT-GAATCGTGTCGGAGTG-AGGCTGT-CCAT--GTA---TACCTTACCTGCATTGTATT-TA-A----------TT---TATGT------ATAAAACCTATGTTTAT-A--TGTCTG--TTTAT---CCAT-AAT--ATG--TCAA--AA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCTA-TA--ATGATATTTTGTAAAGAAACAGCTAC-A--TAT-GAATCA---------------TGT-CCAT--TTACTTTACCTTACCTACATTACATT-
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAgt
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AAGAAACAGC-AAATAT-GA------T---A-T--A---TGT-CCA-----G---TACATTACCTACATTACATT-TA-C-TGTATTATATT---TATGTTACGGAAT-AA--CTATGTTTATCA--TGT-TG--TTTAT---TTATAC-T--ATG--TAAG--AACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gGT-CCATT-GTA----ACCTTACCTGCATTGCATT-TA-T-TAA------T------TGC------AC--AACTCATGTTTAT-A--TTTC----TTTAT---TCA-AGCT--GTG--TAAA--AACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : TGT-CCAT---T----TACCTTACCTACATTACATTGTA-TGTAT------TTATTTATGTTACGA-AT-AA--CTATGTT-AT-A--TGTCTG--TTTAT---ata
gi|25 : taaagaaaccagcttacattcgaattaaA---AAAAATCAGC-A--ACTCGAATCGTGT----------------CCAT---T----TGCCTTACCTACATTGCACT----G-TATGTA---TT---TATTT------A------CTATGTTTAT-tt
gi|28 : CTATGTTTAT-A--TGTATG--TTTAT---T------T--ATG--TAAA--AACCTTAA----------AC-ATATGGA-CTT------GGTA----ATA-AACA-A--T---ACAATACAttactatattta
gi|3 : taaTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatctatctaggaacatcagccgcggttggaaggccgctgccgcgagtcagatatattttttgagtcattaaatttactttatatatatacactgtgtgatcggaaatcaacaatattttaggcttcttgttctacaagtacatagcattatatatcgtacttttttttttttttTTT---GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAA--ATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA----------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCTA-TA--ATGGTATTTTGTAAAGAAACAGCAAC-A--TAT-GAATCA---------------TGT-CCAT---T----TACATTACCTACATTACATTGTATG-TATTTA---TT---TATGTTACGA-AT-AA--CTATGTTTAT-A--TGTCTG--Tggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaG--TTTATACACCATAAAC--TTGATTTAA--AATCTAAATGCA-TAT-G-CAGGA-AGATTTTTA---AGAT------TATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACTA-TATAATGCTATCTCATA---A--CATCA------T-T-TAAT--------A-C--ATTCTTT-------------TACATTGCCTGCATTGTATT-TA-----T------TT---TATGT------AC-AA-TCTATGTTTAT-A--TCTCTA--TTTAT---AC-----T--ATG--TAAA--AACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACA
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|27 ): ATTTTGTAAAGAAACAGCTACATATGAATCATGTTCATTTACCTTACCTACGTTACATTGTATGTATTTATTTATGCTA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 1 11 22 1 1 22 111 1 1 1 33333333 33333333 1 1 222 2222 77777777777777777777777777777 1 777777777777777777777777777777 3333333333333 3333333333333333333333333333333 1111 111111 66666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 7 3 44 11111111 66666666 7 2 6 3 8 3 1 6 99 999 3 1111 5 00 00000000000000000000000000000 4 6 000000000000000000000000000000 1 4 66 66 2222222222222 66 1 6 1111111111111111111111111111111 9999 2222 4 55 444444 0 1 1 6 77777777777777777777777777777777777777 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . . . .. ........ ........ . . . . . . . . .. ... . .... . .. ............................. . . .............................. . . .. .. ............. .. . . ............................... .... .... . .. ...... . . . . ...................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 3 3 00 00000000 00000000 3 0 7 2 0 2 4 7 22 444 5 0000 0 22 88888888888888888888888888888 0 0 333333333333333333333333333333 9 4 99 11 5555555555555 99 0 6 0000000000000000000000000000000 4444 8888 0 55 333333 1 0 0 7 88888888888888888888888888888888888888 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACANCAGC---ATAT-GAATCGTGT--------A-ACTGT-CCAT---T-TA-CCTTACCTACATTGCATTGTA--GTATT---TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTG--TTTAT---CCATAAAT--ATG--TNAAAACGTTAA--CC-TAT-GACTGTATAG-TTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AAACATCAGC---ATAT-GAATCGTGT--------ATACTGT-CCAT---TATA-CCTTACCTGCATTGCATT-TA--NTATT---TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTG--TTTAT---CCATAAAT--ATG--TNAAAACGTTAA--CC-TAT-GACTGTATAG-TTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG--T-GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACT-AAACATCAGT---TTAT-G-ATCGTGTCGGAGTGGAGGCTGTGCCATAAGTATA-CATTACCTGCA-TGTATT-TA--ATA-T---CTTATGT-------ATAAACCTATG-TTAT-AATTGTCTGTATTTAT---CCATAAATAAATG--TCAAAAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT----GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tA--CC-CAT--ACGGTATA------TT----GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG---------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcaacatttcaattaatatTACAAACT-ATA--ATGGTATCTTATAT--AAACATCAGTT--ATAT-GAATCGTGTCGGAGTG-AGGCTGT-CCATG--TATA-CCTTACCTGCATTGTATT-TA--AT-------TTATGTATA------AAACCTATGTTTAT-A--TGTCTG--TTTAT---CCAT-AAT--ATG--TCAAAA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTAAAGAAACAGCTAC---ATAT-GAATCATGT-----------CCAT-TTAC---TTTA-CCTTACCTACATTACATT-
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAgt
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AAGAAACAGCAA-ATAT-GA------T--------ATA-TGT-CCA-----GTA-CATTACCTACATTACATT-TACTGTATTATATTTATGT-TACGGAATAA--CTATGTTTATCA--TGT-TG--TTTAT---TTAT-ACT--ATG--TAAGAACGTTAA--CC-TAT-AACTGTAT-G-TTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gGT-CCAT---TGTAACCTTACCTGCATTGCATT-TA--TTAAT-------TG--CAC------AACTCATGTTTAT-A--TTTC----TTTAT---TCA-AGCT--GTG--TAAAAACGTCAA------A-----TATATCG-TTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : TAATGT-CCAT---T-TA-CCTTACCTACATTACATTGTAT-GTATTTA-TTTATGT-TACGA-ATAA--CTATG-TTAT-A--TGTCTG--TTTAT---ata
gi|25 : taaagaaaccagcttacattcgaatA---AAAAATCAGC---AACTCGAATCGTGT----------------CCAT---T-TG-CCTTACCTACATTGCACTGTA---TGTA---TTTAT-T-TA----------CTATGTTTAT-tt
gi|27 : ATTTTGTA---AAGAAACAGCTACATAT-GAATCATGT----------------TCAT---T-TA-CCTTACCTACGTTACATTGTAT-GTATTTA-TTTATGC-TAttactatattta
gi|28 : CTATGTTTAT-A--TGTATG--TTTAT---T------T--ATG--TAAAAACCTTAA----------AC-ATATGG--ACTT------GGTA----ATA-AACA-A--T---ACAATACA
gi|3 : taaTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatctatctaggaacatcagccgcggttggaaggccgctgccgcgagtcagatatattttttgagtcattaaatttactttatatatatacactgtgtgatcggaaatcaacaatattttaggcttcttgttctacaagtacatagcattatatatcgtacttttttttttttttTTT----GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAAATCATTCA--CT-TAT-G--TG---AA-TTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA----------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTAAAGAAACAGCAAC---ATAT-GAATCA---------------TGT-CCAT---T-TA-CATTACCTACATTACATTGTAT-GTATTTA-TTTATGT-TACGA-ATAA--CTATGTTTAT-A--TGTCTG--Tggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaG--TTTATACACCATAAAC--TTGATTTAAAATCTAAATGCA-TAT-G-CAGGA-AG-ATTTTT----AAG-A----TTATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCATA---A--CATCATT----TA-------------------ATACATT-C--T---TTTA-CATTGCCTGCATTGTATT-TA------T---TTTATGT--ACA--AT----CTATGTTTAT-A--TCTCTA--TTTAT---AC-----T--ATG--TAAAAACGTTAA--TCATATAAACTGTATAG-TTCTT------GCTA----ATA----A-A--T---ACGATACA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|26 ): TGTAAATAAACATCTGCATACTACAATCCATGCCACTTTTACCTTACCTACATTACATTGTACTGTTTATTTATCTATGTTA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 1 11 22 1 1 22 111 1 1 111 33333333 33333333 1 1 111 2222222 7777777777777777777777 11111 66666666666666666666666666666666 3333333333 333333333333333333333333333333 1111 111111 66666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 999 44 11111111 66666666 7 2 6 0 8 3 1 6 99 666 99999 2 2222222 4 99 4 0 2222222222222222222222 3 44444 3 7777 8 00000000000000000000000000000000 4 66 66 1111111111 77 66 1 6 000000000000000000000000000000 9999 2222 4 55 444444 0 1 1 6 77777777777777777777777777777777777777 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . ... .. ........ ........ . . . . . . . . .. ... ..... . ....... . .. . . ...................... . ..... . .... . ................................ . .. .. .......... .. .. . . .............................. .... .... . .. ...... . . . . ...................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 777 00 00000000 00000000 3 0 7 8 0 2 4 7 22 555 99999 4 2222222 0 55 0 8 8888888888888888888888 6 11111 6 7777 2 66666666666666666666666666666666 4 99 11 5555555555 99 99 0 6 555555555555555555555555555555 4444 8888 0 55 333333 1 0 0 7 88888888888888888888888888888888888888 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AA---AAANCAG---C---ATA-T--G-AATC-GTGT-----------CTGT-CCA-T---T-TA-CCTTACCTACATTGCAT----TGTATGTATTTA----TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA---AA---ACANCAG---C---ATA-T--G-AATC-GTGT---------AACTGT-CCA-T---T-TA-CCTTACCTACATTGCAT----TGTA-GTATT------TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAGT---GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA---A--ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACT-AA---ACATCAG---T---TTA-T--G-A-TC-GTGTCGGAGTGGAGGCTGTGCCA-TAAGTATA-CATTACCTGCAT-GTAT----T-TA-ATATC------TT-ATGT-------ATAAACCTATGTT-AT-AATTGTCTGTATTTAT---CCATAAATAAATG--TCAAAAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tA--CC-CAT--ACGGTATA-----TT----GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG---------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcaacatttcaattaatatTACAAACT-ATA--ATGGTATCTTATAT--AA---ACATCAG---TT--ATA-T--G-AATC-GTGTCGGAGTGA-GGCTGT-CCA-TG--TATA-CCTTACCTGCATTGTAT----T-TA-AT----------TTATGTATA------AAACCTATGTTTAT-A--TGTCTGT--TTAT---CCAT-AATA--TG--TCAAAA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTA---AA---GAAACAGCTAC---ATA-T--G-AATC-ATGT-----------CCAT-TTACT---T-TA-CCTTACCTACATTACAT----TGT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAA
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATGTT-CAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA---AA---GAAACAG---CAA-ATA-T--G-A-----TAT---------A--TGT-CCA-----G-TA-CATTACCTACATTACATTTACTGTA-TTATA------TTTATGT-TACGGAATAA--CTATGTTTATCA--TGT-TGT--TTAT---TTAT-ACTA--TG--TAAGAACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gGT-CCA-T---TGTAACCTTACCTGCATTGCAT----T-TA-TTAAT----------TG--CAC------AACTCATGTTTAT-A--TTTC--T--TTAT---TCA-AGCTG--TG--TAAAAACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : A---AG---AAACCAG---CTT-ACA-TTCG-AAT-----T---------AA-TGT-CCA-T---T-TA-CCTTACCTACATTACAT----TGTATGTATTTA----TTTATGT-TACGA-ATAA--CTATG-TTAT-A--TGTCTGT--TTAT---ata
gi|25 : taA---AA---AAATCAG---C---AAC-TC-G-AATC-GTGT----------------CCA-T---T-TG-CCTTACCTACATTGCAC----TGTATGTA--------TTTAT-T-TA----------CTATGTTTAT-tt
gi|26 : TGTA---AATAAACATCTG---C---ATACT--ACAATCCATGC---------CACT-------T---T-TA-CCTTACCTACATTACAT----TGTA-CTGTTTATTTATCTATGT-TAttactatattta
gi|27 : ATTTTGTA---AA---GAAACAG---CTACATA-T--G-AATC-ATGT----------------TCA-T---T-TA-CCTTACCTACGTTACAT----TGTATGTATTTA----TTTATGC-TA
gi|28 : CTATGTTTAT-A--TGTATGT--TTAT---T------TA--TG--TAAAAACCTTAA----------AC-ATATGG-ACTT------GGTA----ATA-AACA-A--T---ACAATACA
gi|3 : taaTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatctatctaggaacatcagccgcggttggaaggccgctgccgcgagtcagatatattttttgagtcattaaatttactttatatatatacactgtgtgatcggaaatcaacaatattttaggcttcttgttctacaagtacatagcattatatatcgtacttttttttttttttTTT----GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAAATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA----------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTAAAGAA---ACAGCAA---C---ATA-T--G-AATC-A---------------TGT-CCA-T---T-TA-CATTACCTACATTACAT----TGTATGTATTTA----TTTATGT-TACGA-ATAA--CTATGTTTAT-A--TGTCTGT--ggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaGT--TTATACACCATAAACT--TGATTTAAAATCTAAATGCA-TAT-G-CAGGA-AGATTTTT----AAG-A----TTATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCATA---A--------CAT---C---AT--T--T-AAT----------------AC-AT-TCT-T---T-TA-CATTGCCTGCATTGTAT----T-----TATT------TT-ATGT--ACA--AT----CTATGTTTAT-A--TCTCTAT--TTAT---AC-----TA--TG--TAAAAACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 1 11 22 1 1 22 111 1 1 111 33333333 33333333 1 1 2222222 4444444444444444444444444444444 4444444444 3333333333 333333333333333333333333333333 1111 111111 66666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 999 44 11111111 66666666 7 2 6 0 8 3 1 6 99 99 2 2 777 3333333 4 777 3 4 6666666666666666666666666666666 3 55 0 8 55 4 0 55 8888888888 4 66 66 1111111111 77 66 1 6 000000000000000000000000000000 9999 2222 4 55 444444 0 1 1 6 77777777777777777777777777777777777777 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . ... .. ........ ........ . . . . . . . . .. .. . . ... ....... . ... . . ............................... . .. . . .. . . .. .......... . .. .. .......... .. .. . . .............................. .... .... . .. ...... . . . . ...................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 777 00 00000000 00000000 3 0 7 8 0 2 4 7 22 55 0 4 000 7777777 0 111 4 0 8888888888888888888888888888888 6 00 2 0 55 0 8 33 9999999999 4 99 11 5555555555 99 99 0 6 555555555555555555555555555555 4444 8888 0 55 333333 1 0 0 7 88888888888888888888888888888888888888 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAANCA---G---C---ATA-T-G-AAT-C-GTGTC----------TG--TCCA---T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TATTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAAAANCA---G---C---ATA-T-G-AAT-C-GTGTC----------TG--TCCA---T-T-TA-CCTTA--CCTACATTGCATTGTA-TG--TATT-TATTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAGT---GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA---A--ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACTAAACATCA---G---T---TTA-T-G-A-T-C-GTGTC----------GGAGTGGAGGCT-G-TG-CCATAAGTATACATTAC-CTGCA-TG--TATT-TAAT-ATCT-TATGT-ATAAACCTATGTT-AT-AATTGTCTGTATTTAT---CCATAAATAAATG--TCAAAAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tA--CC-CAT--ACGGTATA-----TT----GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG---------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcaacatttcaattaatatTACAAACT-ATA--ATGGTATCTTATAT-AAACATCA---G---TT--ATA-T-G-AAT-C-GTGTCGGAGTGAGGCTG--TCCA---TGTATA-CCTTA--CCT-----GCATTGTA-TT--TA----ATTTATGTATA------AAACCTATGTTTAT-A--TGTCTGT--TTAT---CCAT-AATA--TG--TCAAAA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTA--AAGAAACA---GCTAC---ATA-T-G-AAT-C-ATGTC----------CA--TTTAC--T-T-TA-CCTTA--CCTACATTACATTGT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAA
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATGTT-CAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA--AAGAAACA---G---CAA-ATA-T-G-A------TATA----------TG--TCCA-----G-TA-CATTA--CCTACATTACATT-TACTG--TATTATATTTATGT-TACGGAATAA--CTATGTTTATCA--TGT-TGT--TTAT---TTAT-ACTA--TG--TAAGAACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gG--TCCA---T-TGTAACCTTA--CCTGCATTGCATT--------TATT-AATT---GC--AC------AACTCATGTTTAT-A--TTTC--T--TTAT---TCA-AGCTG--TG--TAAAAACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : A--AGAAACCA---G---C---TTA-C---ATT-C-GAATTAA--------TG--TCCA---T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TATTTATGT-TACGA-ATAA--CTATG-TTAT-A--TGTCTGT--TTAT---ata
gi|25 : taA--AAAAATCA---G---C---AAC-TCG-AAT-C-GTGTC----------------CA---T-T-TG-CCTTA--CCTACATTGCACTGTA-TG--TATT-TATTTA----------------CTATGTTTAT-tt
gi|26 : TGTA--AATAAACATCTG---C---ATACT-ACAAT-CCATG-----------------CCACT-T-T-TA-CCTTA--CCTACATTACATTGTACTGTTTATT-TATCTATGT-TAttactatattta
gi|27 : ATTTTGTA--AAGAAACA---G---CTACATA-T-G-AAT-C-ATGTT----------------CA---T-T-TA-CCTTA--CCTACGTTACATTGTA-TG--TATT-TATTTATGC-TA
gi|28 : CTATGTTTAT-A--TGTATGT--TTAT---T------TA--TG--TAAAAACCTTAA----------AC-ATATGG-ACTT------GGTA----ATA-AACA-A--T---ACAATACA
gi|3 : taaTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatctatctaggaacatcagccgcggttggaaggccgctgccgcgagtcagatatattttttgagtcattaaatttactttatatatatacactgtgtgatcggaaatcaacaatattttaggcttcttgttctacaagtacatagcattatatatcgtacttttttttttttttTTT----GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAAATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA----------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTA--AAGAAACA---GCAAC---ATA-T-G-AAT-C-A--------------TG--TCCA---T-T-TA-CATTA--CCTACATTACATTGTA-TG--TATT-TATTTATGT-TACGA-ATAA--CTATGTTTAT-A--TGTCTGT--ggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaGT--TTATACACCATAAACT--TGATTTAAAATCTAAATGCA-TAT-G-CAGGA-AGATTTTT----AAG-A----TTATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCATA--A-----CA---T---C---AT--T-T-AATAC-AT-TC----------T----------T-T-TA-CATTG--CC-----TGCATTGTA-TT--TAT----TTTATG--TAC------AATCTATGTTTAT-A--TCTCTAT--TTAT---AC-----TA--TG--TAAAAACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 1 11 22 1 1 22 111 1 1 111 33333333 33333333 1 1 2222222 4444444444444444444444444444444 4444444444 3333333333 333333333333333333333333333333 1111 111111 66666666666666666666666666666666666666 111111 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 999 44 11111111 66666666 7 2 6 0 8 3 1 6 99 99 2 4 777 3333333 4 777 3 4 6666666666666666666666666666666 3 55 0 8888 55 4 8 0 55 8888888888 4 66 66 1111111111 77 66 1 6 000000000000000000000000000000 9999 2222 4 55 444444 0 1 1 6 77777777777777777777777777777777777777 999999 44444444 444
lowQualScore : . . .. .. . . . .. . ... . . . ... .. ........ ........ . . . . . . . . .. .. . . ... ....... . ... . . ............................... . .. . .... .. . . . .. .......... . .. .. .......... .. .. . . .............................. .... .... . .. ...... . . . . ...................................... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 777 00 00000000 00000000 3 0 7 8 0 2 4 7 22 55 4 0 000 7777777 0 111 4 0 8888888888888888888888888888888 6 00 4 7777 55 0 0 8 33 9999999999 4 99 11 5555555555 99 99 0 6 555555555555555555555555555555 4444 8888 0 55 333333 1 0 0 7 88888888888888888888888888888888888888 222222 22222222 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAAAC-A---G---C---ATA-T-G-AAT-C-GTGTC----------TG--TCCA---T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA-TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAANC-A---G---C---ATA-T-G-AAT-C-GTGTC----------TG--TCCA---T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA-TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAGT---GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA---A--ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACTAAACATC-A---G---T---TTA-T-G-A-T-C-GTGTC----------GGAGTGGAGGCT-G-TG-CCATAAGTATACATTAC-CTGCA-TG--TATT-TA-AT-ATCT-TATGT-ATAAACCTATGTT-AT-AATTGTCTGTATTTAT---CCATAAATAAATG--TCAAAAC-TTAA--CC-TAT-GACTGTATAGTTTTTTT---GGGTA----ATATATCA-A--T---AC-ATACATTATTTACAT-ACT-----TT-A--GAAT----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tA--CC-CAT--ACGGTATA-----TT----GGGCAGGAAACATACGACA--T---GC-ATAAATTGTTTGGATTAGT-----TT-G--GAAG---------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------G
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcaacatttcaattaatatTACAAACT-ATA--ATGGTATCTTATAT-AAACATC-A---G---TT--ATA-T-G-AAT-C-GTGTCGGAGTGAGGCTG--TCCA---TGTATA-CCTTA--CCTGCATT----------G--TATT-TAATTTATGTATA------AAACCTATGTTTAT-A--TGTCTGT--TTAT---CCAT-AATA--TG--TCAAAA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTA--AAGAAAC-A---GCTAC---ATA-T-G-AAT-C-ATGTC----------CA--TTTAC--T-T-TA-CCTTA--CCTACATTACATTGT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAA
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATGTT-CAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA--AAGAAAC-A---G---CAA-ATA-T-G-A------TATA----------TG--TCCA-----G-TA-CATTA--CCTACATTACATT-TACTG--TATTATA-TTTATGT-TACGGAATAA--CTATGTTTATCA--TGT-TGT--TTAT---TTAT-ACTA--TG--TAAGAACGTTAA--CC-TAT-AACTGTAT-GTTCCTT-----GGTA----ATA-AACA-A--T---ACAATACAt
gi|21 : gG--TCCA---T-TGTAACCTTA--CCTGCATTGCATT--------TATT-AA-TT---GC--AC------AACTCATGTTTAT-A--TTTC--T--TTAT---TCA-AGCTG--TG--TAAAAACGTCAA------A-----TATATCGTTCTT------GGTA----ATA-AATA-A--T---AC-Aa
gi|23 : TA--AAGAAACCA---G---C---TTA-C---ATT-C-GAATTAA--------TG--TCCA---T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA-TTTATGT-TACGA-ATAA--CTATG-TTAT-A--TGTCTGT--TTAT---ata
gi|25 : A--AAAAATC-A---G---C---AAC-TCG-AAT-C-GTGTC----------------CA---T-T-TG-CCTTA--CCTACATTGCACTGTA-TG--TATT-TA-TTTA----------------CTATGTTTAT-tt
gi|26 : TGTA--AATAAAC-ATCTG---C---ATACT-ACAAT-CCATG-----------------CCACT-T-T-TA-CCTTA--CCTACATTACATTGTACTGTTTATT-TA-TCTATGT-TAttactatattta
gi|27 : ATTTTGTA--AAGAAAC-A---G---CTACATA-T-G-AAT-C-ATGTT----------------CA---T-T-TA-CCTTA--CCTACGTTACATTGTA-TG--TATT-TA-TTTATGC-TA
gi|28 : CTATGTTTAT-A--TGTATGT--TTAT---T------TA--TG--TAAAAACCTTAA----------AC-ATATGG-ACTT------GGTA----ATA-AACA-A--T---ACAATACA
gi|3 : taaTAACA-A--T---A--ACA-ACTTTTTAAA--ATT-----TTCA--GCAG----------------TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatctatctaggaacatcagccgcggttggaaggccgctgccgcgagtcagatatattttttgagtcattaaatttactttatatatatacactgtgtgatcggaaatcaacaatattttaggcttcttgttctacaagtacatagcattatatatcgtacttttttttttttttTTT----GAATA----ATCTACTA-A--TCGTGT-ATACATTGTTTACAT-AAA-----T--A--GAAAGTAATGTCGCCTAAGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|5 : tgaaaG--TCAAATCATTCA--CT-TAT-G--TG---AATTCATTCACGGGGTA----ATATTTAG-G--T---AT-TTGCTTTATG-ATGT-A-T-----TT-ACTGAA----------------------TGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGGggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|6 : aagAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTA--AAGAAAC-A---GCAAC---ATA-T-G-AAT-C-A--------------TG--TCCA---T-T-TA-CATTA--CCTACATTACATTGTA-TG--TATT-TA-TTTATGT-TACGA-ATAA--CTATGTTTAT-A--TGTCTGT--ggggaggtcgctttagtatgtaatgacatttgacgaatatagcgatctacgttcgctgactaccgagtacttattaatgtaattatcttaattcataccctttaat
gi|8 : gaGT--TTATACACCATAAACT--TGATTTAAAATCTAAATGCA-TAT-G-CAGGA-AGATTTTT----AAG-A----TTATGTTA-AGTT---GT-CTATAGTCTTTTTAT-ATTAACGCTC-A--AGAG----------------T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cctacATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCATA--A-----C-A---T---C---AT--T-T-AATAC-AT-TC----------T----------T-T-TA-CATTG--CCTGCAT----------TG--TATT-TATTTTATG--TAC------AATCTATGTTTAT-A--TCTCTAT--TTAT---AC-----TA--TG--TAAAAACGTTAA--TCATATAAACTGTATAGTTCTT------GCTA----ATA----A-A--T---ACGATACA
blockSeqs : A . . TT G A T GT T CGG A G . ATT AA TAAA TATCC A G C G C T A TA T T C TCT CTAC C CG A A GTGTCGGAGTGAGGCTGTCCATGTA A . GTAC TT A A TA CGGAATAA C . . ACACCATAAA . AT C G TGCATATGCAGGAAGATTTTTA GGAA TACG C GT CGTGT G G T AATAGAAAGTAATGTCGCCTAAGCTC TGAGAC TCAAGGTC TTC
blockSeqs : . . G . . . G . . . AT AA AAA TC A . C . C T . . . A . . CTAC . AC A . GAATTAATGTCCATT . . TAC . . T T CGAATAA . . . CCATAA . . A G TCATATAAACTGTATAGTTCTT . TAAC . . ACA T A . TTAACGCTCAAGAGTC . . .
blockSeqs : AG . C . . . . A . . CAAC . G T . ATGTCCATTTACTT . . GTA . . . C CGAATAA . . . TTATAC . . A C CTTATGTGAATTCATTCACGG . TACT . . ACA G C . TTTTCAGCAGTATAT . . .
blockSeqs : . . . . . . A . . CAA . G A . TATATGTCCAG . . GTA . . . T AAAC . . . TCAAGC . . A A CCTATAACTGTATGTTCCTT . TTTA . . ACG A T . GTTTGGAAG . . .
blockSeqs : . . . T . . TT . G A . CATGCCACTTT . . GTA . . . T CAAC . . . AC . . C C CCCATACGGTATATTG . TGTT . . GC C T . TTTACTGAA . .
blockSeqs : . A . . C . G A . GTGTCCATT . . GTA . . . C CAAT . . . T . . T G ATATATCGTTCTT . AAC . . AC
blockSeqs : . A . . C . G A . ATGTTCATT . . . . . . T . . . . . A ACATATGGACTT . AAT . . AT
blockSeqs : . A . . C . T A . ATGTCCATT . . . . . . . . . . AAC . . GT
blockSeqs : . . . . C . . . . ATTCTTT . . . . . . . . . . A
blockSeqs : . .
blockSeqCons : ** ATGTCCATT********************** ** CAATA***** ** ** CCATAN**** ** CCATATGAACTGTATGTTCTTG******** TTACGTTTAGNAGTC***********************
originalCons : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAAAC-A---G---C---ATA-T-G-AAT-C-GTGTC----------TG--TCCA---T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA-TTTATGT-TACG--ATAAACCTATGTTTAT-A--TGTCTGT--TTAT---CCATAAATA--TG--TNAAAACGTTAA--CC-TAT-GACTGTATAGTTCTTT----GGGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ANT-----TT-A--GAAG----------------T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
finalCons : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATGTT-CAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAAAC-A---G---C---ATA-T-G-AAT-CATGTCCATT----------------------TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA-TTTATGT-TACAATA-----CTATGTTTAT-A--TGTCTGT--TTATCCATAN----TA--TG--TNAAAACGTTAACCATATGAACTGTATGTTCTTG--------GGTA----ATATANCA-A--T---AC-ATACATTNTTTANAT-ATTACGTTTAGNAGTC-----------------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Alignments
lowQualScore : 1 1 11 22 1 1 22 111 1 1 1 33333333 33333333 1 1 2222222 4444444444444444444444444 1111 22222222 44444444444444444444 1111 1 111111 777777777777777777 111111 222222 22222222 111
lowQualScore : 5 5 88 00 2 2 7 55 7 555 7 3 3 7 3 44 11111111 66666666 7 2 6 3 8 3 1 6 99 55 4 4 777 9999999 4 99 4 4 55 4 0000000000000000000000000 3 55 0 8888 55 4 6666 777 77 99999999 4 1 5 66 66 99999 1 99 1 5 1 7 00000000000000000000 2222 5 33 5 666666 1 1 1 555555555555555555 77 999999 333333 99999999 444
lowQualScore : . . .. .. . . . .. . ... . . . . . .. ........ ........ . . . . . . . . .. .. . . ... ....... . .. . . .. . ......................... . .. . .... .. . .... ... .. ........ . . . .. .. ..... . .. . . . . .................... .... . .. . ...... . . . .................. .. ...... ...... ........ ...
lowQualScore : 5 0 00 77 0 0 3 33 3 333 3 3 3 3 3 00 00000000 00000000 3 0 7 2 0 2 4 7 22 55 0 0 000 2222222 0 55 0 0 66 0 9999999999999999999999999 6 00 4 7777 55 0 5555 000 88 99999999 4 9 0 99 99 88888 0 22 0 0 0 3 00000000000000000000 1111 5 00 0 888888 4 0 0 888888888888888888 00 222222 000000 00000000 000
consensus : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAAA-C-A---G---C---ATA-T--G-A-ATC-A-TGTC--------------CA-----T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA----TT---TATGT-TACG-A-AT-ACT-ATGTTTAT-A--TGTCTG--TTTATCCAT-ACT--ATGTAAAAACGTTAACCATATGAACTGTAT-G---TTCTTGGGTA----ATATAACA-AT---AC-ATACATTNTTTANATA--T------TAA---CGTTTAGAAG-T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
Reference ( family-1297 ) : NTTCAGGAAAATGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCAAGCAGAATACGT-CTTCAGAATTATCG-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTC-ACTATACTACGTACAAGCT-ATA--ATGGTATCTTGTA--AAGAAA-C-A---G---C---ATA-T--G-A-ATC-A-TGTC--------------CA-----T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA----TT---TATGT-TAC--A-AT-ACT-ATGTTTAT-A--TGTCTG--TTTATCCAT-ANT--ATGTNAAAACGTTAACCATATGAACTGTAT-G---TTCTTGGGTA----ATATANCA-AT---AC-ATACATTNTTTANATA--T------TA----CGTTTAGNAG-T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|1 : TTCAGGAAA-TGTATCATTAAGAAATATTATAAGAACTAATTTATGTTGT-ATCTAACA-AATACGT-CTTCAGAATTATTG-TAAGGTAGGGAAATATTTATATAA-ATGTTTCAAG--T-GAGAACAGA---CATACA-CACCCATACTGAGCTAT---CATGCT--TTAACCAAA-A----ATGTTTTATATTC-ATTATATTACATACAACGT-ATA--ATGGTATCTTATACTAAACAT-C-A---G---T---TTA-T--G---ATC-G-TGTCGGAGTGGAGG----C------T-G-TG-CCATAAGTATACATTAC-CTGCA-TG--TATT-TAATATCT---TATG--TAT--A-AA-CCT-ATG-TTAT-AATTGTCTGTATTTATCCATAAATAAATGTCAAAAC-TTAACC-TATG-ACTGTAT-AGTTTTTTTGGGTA----ATATATCA-AT---AC-ATACATTATTTACATA--C--------------TTTAGAAT-T---CCGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGC---GGGTGGGGGGGGGGGGGGGGG
gi|11 : tTACCCATACG----GTAT-A---TT---GGGCAGGAAACATACGACAT---GC-ATAAATTGTTTGGAT----------TA-----GTTTGGAAG-C-----------GGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GG
gi|14 : ttactatctatcttttctttgtttatagtattgaacatgtattccccttattgacaaataggcaacatttcaattaataTACAAACT-ATA--ATGGTATCTTATA--TAAACATC-A---G---TT--ATA-T--G-A-ATC-G-TGTCGGAGTGAGGCTGTCCA-----TGTATA-CCTTA--CCTGCATT----------G--TATT-TAA---TT---TATGTATAA--A-AC--CT-ATGTTTAT-A--TGTCTG--TTTATCCAT-AAT--ATGTCAAAA
gi|18 : tatatTATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGATATTTTGTA--AAGAAA-C-A---GCTAC---ATA-T--G-A-ATC-A-TGTC--------------CATTTACT-T-TA-CCTTA--CCTACATTACATTGT
gi|19 : caactttacgcatttatgTTCAGGAAAATGTAT-ATTAAGAAATATTATAA--ACTAATTTATGTTGTTATCAA-CAAAATACGT--TTCAGAATTAT-G-TAAAGTAGGGAAATATTTATATAA-ATG-TTCAAGTAT-GAGAACAGAAA
gi|2 : TATTG--ATCAAGCAGAA-ACGTGTTTCAGAAT-ATCGGTAAATTAGGGAA-TATTTATATAAGATG-TTCAAATATTAAGAACAGAAAGCGTATA-AA---A-GCTGAGGT-T---C--GCTAATTTACCGAACATATTATGTTTTATATTCGACTATACTA-GTACAAGCTAATA--ATGGTATTTTGTA--AAGAAA-C-A---G---CAA-ATA-T--G-ATAT--A-TGTC--------------CA-------G-TA-CATTA--CCTACATTACATT-TACTG--TATTATA----TT---TATGT-TACGGA-ATAACT-ATGTTTATCA--TGT-TG--TTTATTTAT-ACT--ATGTAAGAACGTTAACC-TAT-AACTGTAT-G---TTCCTTGGTA----ATA-AACA-AT---ACAATACAt
gi|21 : gGTC--------------CA-----T-TGTAACCTTA--CCTGCATTGCATT--------TATT-AA----TT------GC--AC--A-A---CTCATGTTTAT-A--TTTCT----TTATTCAA-GCT--GTGTAAAAACGTCAAATATAT--------C-G---TTCTT-GGTA----ATA-AATA-AT---AC-Aa
gi|23 : TA--AAGAAA-CCA---G---CTT-ACA-TTCG-A-ATT-AATGTC--------------CA-----T-T-TA-CCTTA--CCTACATTACATTGTA-TG--TATT-TA----TT---TATGT-TACG-A-ATAACT-ATG-TTAT-A--TGTCTG--TTTATata
gi|25 : A--AAAAAT-C-A---G---C---AAC-TC-G-A-ATC-G-TGTC--------------CA-----T-T-TG-CCTTA--CCTACATTGCACTGTA-TG--TATT-TA----TTTACTATGT-T-T--ATTT-ACT-ATATTTAtt
gi|26 : TGTA--AATAAA-C-ATCTG---C---ATACT--ACA-ATCCA-TG-C--------------CACT---T-T-TA-CCTTA--CCTACATTACATTGTACTGTTTATT-TA----TC---TATGT-TA
gi|27 : ATTTTGTA--AAGAAA-C-A---G---CTACATA-T--G-A-ATC-A-TGTT--------------CA-----T-T-TA-CCTTA--CCTACGTTACATTGTA-TG--TATT-TA----TT---TATGC-TA
gi|28 : -ACT-ATGTTTAT-A--TGTATG--TTTAT------TT--ATGTAAAAACCTTAAACATATGGACT-T-------------GGTA----ATA-AACA-AT---ACAATACA
gi|3 : taTAACA-AT---A--ACA-ACTTTTTAAA-A--T------T-------TTCAGCAG-TATATTGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGTGGGG
gi|4 : attcatcgtgtagatccggttatctatctaggaacatcagccgcggttggaaggccgctgccgcgagtcagatatattttttgagtcattaaatttactttatatatatacactgtgtgatcggaaatcaacaatattttaggcttcttgttctacaagtacatagcattatatatcgtacttttttttttttttTTGAATA----ATCTACTA-ATCGTGT-ATACATTGTTTACATAAATAGAAAGTAATGTCGCCTA--AGCT---CCTAGTGGCGGGCGCGGGGGGGGGGGGGGG------GGG--------GGGGG---GGGGGGGGGGGGGGGGGGGGG
gi|6 : tgaaatAAGGCGTATATAA---A-GCTGAGGT-TATCC--TCAAATTTACC-AACATATTATGTTTTATATTC-ACTATACTATGTACAAGCT-ATA--ATGGTATTTTGTA--AAGAAA-C-A---GCAAC---ATA-T--G-A-ATC-A-TGTC--------------CA-----T-T-TA-CATTA--CCTACATTACATTGTA-TG--TATT-TA----TT---TATGT-TACG-A-ATAACT-ATGTTTAT-A--TGTCTG--Tggggggggggggggggggggggggggagggggctgactctcccactcctatatttgaccagttacatttatgcaaaataagttattttagaatacaaattgaaatatattggcttacatcaccccccattttcattattataattatagca
gi|8 : gaTATAGTCTTTTTATA--T------TAA---CGCTCAAGAG-T---CCGGGGAGGGGGGAGGGGGGGGGGGGGGGGTGAGACGGGTCAAGGTCGAAGGTTCGGGGGGGGGGGGGGGGGGGGG
gi|9 : cctacgtttatacaccataaacttgatttaaaatctaaatgcatatgcaggaagatttttaagattatgttaagttgtcATTGTGTTTTGTATTC-ATTATA------ACAAACT-ATATAATGCTATCTCAT-------AA-C-A---T---C---AT--T--T-A-AT--A-CATT--------------CT-----T-T-TA-CATTG--CCTGCAT----------TG--TATT-TAT---TT---TATG--TAC--A-AT--CT-ATGTTTAT-A--TCTCTA--TTT----AT-ACT--ATGTAAAAACGTTAATCATATAAACTGTATAG---TTCTT-GCTA----ATA----A-AT---ACGATACA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAGGTCAAATCATTCACTTATGTGAATTCATTCACGGGGTAATATTTAGGTATTTGCTTTATGATGTATTTACTGAATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGTCGCTTTAGTATGTAATGACATTTGACGAATATAGCGATCTACGTTCGCTGACTACCGAGTACTTATTAATGTAATTATCTTAATTCATACCCTTTAAT
Unaligned ( gi|7 ): ATCCTTGAAATTGTTGAAAATTTATCAAGAGGAATAAATGTGCTTAATGATGCTTACTGTAGCAAGAAAGCTAGCATCACTTATCTTTCGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGGGGGTGGGGGTGGGTGGAGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|10 ): TCTGTAATCAAATGCATTAACAGTGTATTTAACTTCCTTTACCACATTTGAATGTCTTAAAATAACATGTCTTTATTCTTTTTTACATACTTTTTGTCCAATGCAAGAAATTTTGGTGGGTTTTTTTTTTGCGGGCGGGGGGGGGGCGGGGGGGGGGTGGGGGAGGGGGGGGGGGGGGGG
Unaligned ( gi|12 ): AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAGAATTACATTTTGACAAACTTG
Unaligned ( gi|13 ): AGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTGGGGTGGGGTGGGGGTGTCCTATTATATCTTTGATATAATGATATTGTGGTGATTATTATTTTTTTTTTTTTTAATTTATCATAATTCATCTTATAAT
Unaligned ( gi|15 ): AATAACCTGCTACAATTATTTGAAGTTCCTGATTTGACAAATTAAACAAAAGATCCCAATGTTTATGCATGTATTCAATAACTGGAGTATTTCTTTGAACAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|16 ): GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGATTGGAATATTTTCACATTTTCGAGATGACCTTACACTTTACTTTGCATATTATGATAGCACCATGTTAATATAAAACTTATCATACATTTCTTT
Unaligned ( gi|17 ): GGGGGGGGGGGGGGGGGGGGGGGGGGAGTGAAGTGATTTCCCTGTAGAGCAGAATCATAATCATCGTATATCAATAATGAGACCAGGCCGTGATTATTCAATGTTTACCGTTAACTTACTCTGTAATAAAT
Unaligned ( gi|20 ): TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTCCCGAAGTTAAATGTCGTACTGTTTTACCATTTATATGTAAATCCCAA
Unaligned ( gi|22 ): ATATTTCTTAACGTCCTATTGATGTGTTATATAGAGCTCCAAAGAGACACGCACCTGACATTCTGAACTGTTGGATTTGTGACCTGGAAACCGGGGTGGGGAGGGGGGGGGGGGAGG
Unaligned ( gi|24 ): GGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGATGAAATCCCAGCATATGCCAAAAACTGACTGTAAGACCTCAACACAAAAAA
Unaligned ( gi|29 ): ACATCACATGCAAGAACTGTTCGGAAGAGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG