lowQualScore : 11111111111111111111111111111
lowQualScore : 11111 11111111 1 111111111111 1111 1 111 1111111 22222222222222222222222 222222222222 1111111 1111111111111 111111111111 111111 11111 1111111111111 1111 11111 22222222222222222222222222222 333333333 222 1 111 22 1 111 1 1 22 1 111 1111 2222222 555555555555555555 3333333 11 111 111111 1 1 1 1 222222 22 5555555555555555555 111 11 111 1
lowQualScore : 1 4 11111 4 44444444 1 3 3 3 55 3 3 44 3 3 1 888888888888 7 3 2222 7 0 3 555 000 3 6 44 3 333 3 3 6666666 6 3 44 6 3 22222222222222222222222 3 3 3 666666666666 3 3 55 55 44 1 0000000 6 2 9999 33 2 2 444 2 2 2 33 8888 2 33 888 5555555555555 5 2 2 33 888888888888 777 2 2 6666 000000 2 2 2 6666 2 2 2 33333 2 33 66 2 99 777 2222222222222 2 33 2 2 2 5 555 3 77 3 0000 77 11111 5 99999999999999999999999999999 555555555 5 4 5 66 5 3 999 66 5 5 77 5 8 0 6 5 000 00 3 1 111 6 1 2 6 6 2 4 33 22 99 5 6 6 888 5 55 3333 5 4 66 4 4 1 99999 4 8888 4444444 44 4 0 777777777777777777 2 3 3 4 0000000 3 4 5 0 44 0 77 000 7 5 5 1 1 999999 4 3 7777 2 3 55 8 7 4 3 000000 2 7 4 8 00 0 9999999999999999999 3 88 666 888 3 7 00 5 3 222 3 3 3 7 0
lowQualScore : . . ..... . ........ . . . . .. . . .. . . . ............ . . .... . . . ... ... . . .. . ... . . ....... . . .. . . ....................... . . . ............ . . .. .. .. . ....... . . .... .. . . ... . . . .. .... . .. ... ............. . . . .. ............ ... . . .... ...... . . . .... . . . ..... . .. .. . .. ... ............. . .. . . . . ... . .. . .... .. ..... . ............................. ......... . . . .. . . ... .. . . .. . . . . . ... .. . . ... . . . . . . . .. .. .. . . . ... . .. .... . . .. . . . ..... . .... ....... .. . . .................. . . . . ....... . . . . .. . .. ... . . . . . ...... . . .... . . .. . . . . ...... . . . . .. . ................... . .. ... ... . . .. . . ... . . . . .
lowQualScore : 6 0 55555 0 55555555 1 6 6 6 00 6 6 66 3 3 8 666666666666 3 6 5555 3 5 3 888 777 3 7 66 3 888 3 3 6666666 7 3 66 7 6 99999999999999999999999 6 6 6 444444444444 6 6 00 00 66 0 8888888 7 2 6666 99 9 7 777 7 5 9 99 9999 9 99 999 7777777777777 0 9 9 99 666666666666 999 9 9 1111 444444 9 9 9 1111 9 9 4 00000 7 77 33 7 00 333 5555555555555 5 44 5 5 5 0 888 3 99 3 4444 33 11111 0 22222222222222222222222222222 222222222 0 6 0 99 0 2 000 99 0 0 22 0 6 7 3 7 000 77 3 7 777 7 3 5 7 7 7 8 55 55 22 2 7 7 111 7 88 2222 0 4 22 4 0 1 33333 0 5555 2222222 88 0 8 333333333333333333 3 6 6 0 6666666 2 3 7 1 33 7 99 000 9 7 7 9 0 333333 5 6 7777 7 6 00 8 3 5 6 999999 7 7 0 0 55 8 2222222222222222222 3 00 111 000 6 3 00 0 6 777 6 6 6 3 6
consensus : ACATTACCAAAAT-TG----GTAATT-TTTG--------TTGTTCCA-T-AT-GA--A-CAA-GAATGGA--AA-TCT-CGTGA------------T-ATTG-CAAAA-A--GTGGGA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--A-TAA-A-G-A-AGCGCATTG-T----AC-T-GA--A-AATT-TAG-----T-TC-------------C-AC-ACAGC-TG------------CGTC-TTGA-G--AAG--GG--AAG-------T-GAAAAAGGA----GG--CTGT-C-TTGC---AAGTAGAA-TGTTACA-A--TG----GA-CTAA--AC---CA-------------CTAA-C-A--AT------------AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAANA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAA-ACA----ATGAT-NAT-----C-ATT-------------TAAAC-TTT-A-----TCGGAACGGACAATTTACTAC--G------GTA-GCCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCA--TA-TGCAG-TTA-CT-TTTCCCTATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTA---TAA-GGGGTAATATCTCATGCGTAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTG-TTTAATAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CNCT-TTTCTGATT-AACTA---GTG-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA----AGCA---G---AGCCAAGTC-AA-GTTTAGAT-------GTG-ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAG---TACATACAGCCTGGAAT-AA-ATTCTTCACTTTCTTAA-----ATATCG-CA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCA----------C----TTAT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( gi|3 ) : ACATTACCAAAAT-TG----ATAATT-TTTG--------TTGTTCTA-T-AT-GA--A-CAA-GAATGGA--AA-TCT-CATGA------------T-ATTG-CAAAA-A--GTGGGA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--A-TAA-A-G-A-AGCGCATTT-T----AC-T-GA--A-AATT-TAT-----T-TC-------------C-AC-ACAGC-TG------------CGTC-TTGA-G--AAG--GG--AAG-------T-GAAAAGGGA----GG--CTGT-C-TTGC---AAGTAGAA-TGTTACA-A--TG----GA-CTAA--AC---CA-------------CTGA-C-A--AT------------AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAA-ACA----ATGAT-CAT-----C-ATT-------------T---------------TCGGAACGGACAATTTACTAC--T------GTA-GCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCA--TA-TGCAG-TTA-TT-TTTCCCTATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTA---TAA-TGGGTAATATCTCAAGCATAACTT---ATGC-AATAAGAATAAGCTTA-TGTACGACCTG-TTAAATGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTA---GTG-CTTTA-CCAGATGCAA-CAA-TTGATAAAA----GA-CGGA----AGCA---T---AGCCAAGTC-AA-GTTTCGAT-------GTG-ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAG---TACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA-----ATAT-G-CA----GCAGCAAACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT--------------C----TTAT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|2 : ACATTACCAAAAT-TG----ATAATT-TTTG--------TTGTTCTA-T-AT-GA--A-CAA-GAATGGA--A--TCT-CATGA------------T-ATTG-CAAAA-AA-GTGGGA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--A-TAA---G-A-AGCGCATTT-T----AC-T-GA--A-AATT--AT-----T-TC-------------CCACCACAGC-TG------------CGTC-TTGA-G--AAG--GG--AAG-------T-GAAAAGGGA----GG--CTGT-C-TTGC---AAGTAGAA-TGTTACA-A--TG----GAACTAA--AC---CA-------------CTGA-C-A--AT------------AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----AAGT-GAAAAA--TG-TTGG-T--TTTA-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAA-ACA----ATGAT-CAT-----CAATT-------------T---------------TCGGAACGGACAATTTACTAC--T------G-A-GCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCA--TA-TGCAG-TTA-TT-TTTCCCTATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTA---TA---GGGTAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAATGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCTT-TTTCTGATT-AACTA---GTG-CTTTA-CCAGATGCAA-CAATTTGATAAAA----GA-CGGA----AGCA---T---AGCCAAGTC-AA-GTTTCGAT--------TG-ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAG---TACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA-----ATAT-G-CA----GCAGCAAACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT--------------C----TTAT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATG
gi|24 : ACATTACCAAAAT-TG----GTACTT-TTTG--------TTGT------------------A-GAATGGA--AA-G------GA------------T-ATTG-CAAAA-A--GTGGGA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--A-TAA-A-G-A-AGCGTATTG-T----AC-T-GA--A-AA
gi|8 : CATTAC--AAAT-TG----GTAATT-GTT----------TGTTCCA-T----GA--A-CAA-GAATGGA--AA-TCT-CGTGA------------T-ATTG-CAAAA----GTGGGA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--A-TAA-A-GGA-AGCGTATGT------AC-TTGA--A-AATT-TAG-----T-TT-------------C-AC-ACAGC-TG------------CGTC-TTGA-G--CAG--GG--ACG-------TCGAAAAAGGA----G---CTGT-C-CTGC---AAGTAGAA-TGCT-CA-A--TA----GA-C-AA--AC---CA--------------TAA-C-A---T------------AT-----CA-TCTTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAA-ACA----ATGAT-AAT-----C-ATTTAAACTTTTAATCT---------------TCGGAACGGACAATTTACTAC--G------GTA-GCCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGATATGTAATAATTTGCTTTCCA--TA-TGCAG-TTA-CT-TTTCCCTATTATCAA-------------GAAT-AGAATGCCATGGGATTTTA---TAA-GGGGT-ATATCTCATGCGTAA
gi|4 : ATTACCAATAT-TG----GTAATT-TTTG--------TTGTCC-A-T-AT-GA--A-CAA-GAATAGA--AA-TCT-CGTGA------------T-ATTG-CAAAA-T--GTGGGA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--A-TAG-A-G-A-AGCGCATTG-T----AC-T-GA--A-AATT-TAT-----T-TC-------------C-AC-ACAGC-TG------------CGTC-TTGA-C--AAAATGG--ACG-------T-GGAAAAGG------G--CTGT-C-TTGC---AAGTAGAA-TTCTACA-A--TG----GA-CTAA--AC---CA-------------CTAC-C-A--AT------------AT---TTC--T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CG-ATGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGA-GTAAAGATCACG---T-GCTACAA--TAA-ACA----ATGAT-AAT-----C-ATT-------------TAAACATTTAATCT--TCGGAACGGACAATTTACTAC--G------GTA-GCCGGGAAAT-G--TCTTCTT-CTAAAGATTAAAA-TGGCATTGAT---ATGTAATA-TTTGCTTTCCA--TA-TGCAG-TTA-CT-TTTCCCTATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTA---TAA-GGGGTAATATCTCATGCGAAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTG-TTTAATAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGCCATGATCTTTTGCTCT-TTTCTGATT-AACTA---GTG-CTTTA-CCAGATGCAA-CAA-TTGATAAA-----GA-CGGA----AGCA---G---AACCAAGTC-AA-G--------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGC-GCAAGTT-AAGTATTATGAAAGAAATTA--TTCGGTCAAAAAG-T--GTCAG---TACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA-----ATAT-G-CA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGT-ATT-A-AAACATG--CCAACATTCTTCCA----------C----TTTT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|12 : ATTACCAAATT-AG----GTAATTGTTTG--------TTGGTGCA-T-AT-GA--A-CAA-GAGTGGA--AA-TCT-CA
gi|26 : aATTACCAAAAT-TG----GTAATT-TTTG--------TTGTTCGA-C-AT-GA--A-CAA-GAATGAA--AA-TCT-CGTGA------------T-ATTG-CTNAA-A--GAGGAG-AA--AAT---TCT---A---T-ATCAGA-ATCAT--TAT--A-Tgtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|6 : TTAC--AAAT-TG----GTAAGT-TGCT--------TTGTTCCA-TCAT-GA--A-CAA-GAATGGA--AACTCTTCGTGA------------TTATTG-CAAAA-AAAGTGGGACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGA-TAA-G-G-A-AGCGTATGT------AC-T-GA--ACAAT---AG-----T-TT-------------C-AC-ACAGCCTG------------CGTCCTTGA-G--CAG--GG--ACG-------T-GAAAAAGGA----GG--CTGT-C-CTGC---AAGTAGAACTGCTACA-A--TAA---GA-CTAA--AC---CA-------------CTAA------AT------------AT---TTCA-T-TTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-T-GG-T--T--A-CAA--TTT---GTTCAGT-----AT---CT-CTTAG--TCT----CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAA-ACAC---ATGATACAT-----C-ATT-------------TAAACGTTTTAAATCTTCGGAACGGACAACTTACTACA-G------GTAAGCC-GGAAAT-GACTCTTTTCTATAAAGATTGAAA-TGGCATTGAT--CATGTAATAATTTGCTTTCCATTTATTGCAGATTA-CTATTTCCCTAT-----------TACATA---GAT-AAAATGCCATAGGATTTTA---TAAGGGGGTACTATC-CATGCGTAA-TT---ATGC-AATACGAATAATCTTA-TGTACGACCTG-TTTAATTAAAAAA---ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTGC-AAA-TGGCTTGATCTTTT--GCT-CTTCTGACTAAACTA----TG-CTTTA-CC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA----AACA---G---AGCAACGTC-AAGGTTTAGA--------GTGAACATTAACAGTATTC-TTGA-ACT-G-------GCAAGTTTAAGta
gi|5 : TACCAATAT-TG----GTAATT-TTTG--------TTGTTCCA-T-AT-GA--A-CAA-GAATAGA--AA-TCT-CGTGA------------T-ATTG-CAAAA-T--GTGGGA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--A-TAA-A-G-A-AGCGCATTG-T----AC-T-GA--A-AATT-TAT-----T-TC-------------C-AC-ACAGC-TG------------CGTC-TTGA-C--AAT--GG--ACG-------T-GGAAAAGGA----GG--CTGT-C-TTGC---AAGTAGAA-TTCTACA-A--TG----GA-CTAA--AC---CA-------------CTAC-C-A--AT------------AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CGATTGGGT--T--A-CAAA-TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAA-ACA----ATGAT-AAT-----C-ATT-------------TAAACATTTAATT---TCGGAACGGACAATTTACTAC--G------GTA--CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCATTGAT---ATGTAATAATTTGCTTTCCA--TA-TGCAG-TTA-CT-TTTCCCTATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTA---TAA-GGGGTAATATCTCATGCGAAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTG-TTTAATAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTT-TGCTCTTTCTGATT-AACTA---GTG-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA----AGCA---G---AACCAAGTC-AA-G--------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCGGCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAG---TACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA-----ATAT-G-CA----GCAGCAAACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCT--------------gtta
gi|10 : ACTACAATGTG----GTAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAAA-CTT-CGTGA------------T-GTTG-CAAAATA--GTGGGA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--A-TAATA-G-A-AACAC-CTG-T----ACTT-GA--A-AATTGTAG-----TATC-------------C-AC-ACAGC--G------------CGTC-TTGA-GGAAAG--GG--AAGGTCTGTCT-GCAAGTAGATTTTAGTTCTAT-CTTTGC---AA-TAG-A-TTTTACA-A--TG----GA-CTTA--ACACGCA-------------CTAA-C-A--AT------------ATGCATTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG----C--A-CAAT-TTT---GTTCAGT------TA--C----TA----CT--T-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--TAATATA----------CAT-----C-ATT-------------tcc
gi|9 : CCAAATT-TGTTGGATAAGT-TTTGATCTGGGATTGTGC-A-T-AT-GA--AACAAAGAATGGA--A---CT--ATGAATCGATGGGATTT-ATTGGTAAAA-A--ATTCGAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--A-TAA-AAG-A-AGCGCATTGGT----ACAT-GA--ATAATT-TAG-----T----------------C-AC-GCAGC-TC------------CGTC-TTCA-G--AAG--GA--AAG-------TTGAAAAGGGA----GG--CTGTTC-TTGCCATAGGTAATA-TGTT-CAGA--TGTATTGA-CTAACAAC---TA-------------CT-A-C-A--ATCT----------ATG--TTCAGT-TTCCA----TTC-C---GT-TATA-A----A-GTTGAAAAC--TT-TTGG-T--TT-A-CA---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-A-ACA----ATGAT-AAT-----
gi|1 : ctagttTA-T-AT-GA--A-CAA-GAATGGA--AA-TCT-CATGA------------TTATTG-CAAAA-A--GTGGGA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--A-TAA-A-G-A-AGTGCATTG-T----AC-T-GA--A-AATT-TAG-----T-TC-------------C-AC-ACAGC-TATTAACACAGCTTCGTT-TTGA-G--AAG--GG--ACG-------T-GAAAAGGGA----GG--CTGT-C-TTGC---AAGTAGAA-TGTTACA-A--TG----GA-CT-------------------------TGA-C-----T------------AT-----CA-T-TTCCA----TT------AT-T-TA-ACTATA-CT-GAAACA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAA-ACA----AACAT-T-T-----G-ATC-------------T---------------TTGGAATGGATAATTTACTAC--G------GTA-GCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGATACGTAATAATTTGCTTTCCA--GA-TGCAG-TTACTT-TTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAA-GGGATAATATCTCATGCATAACTA---TTAC-AATATG-ATAA--TTA-TGTACGACCTG-TTTAATAAAACA----ACATATATATTTT--TAGCACGATATGGCTTCCGTATAAA-AATTGC-AAATTAGCATGATCTTTT-GCTC-TTTCTGATT-GGCTAATTATG-CTTTA-CCGGATGCAA-CAG-TTGATAAAA----GA-TGGA----AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTA-ACATTCAAAGT-CTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA-----ATAT-G-CATGCTGCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCA----------C----TTAT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGTt
gi|13 : aaacattaccaaattcggATGGA--AA-TCT-CGTGA------------T-GTTG-CAAAA-A--GTGGTA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--A-TAA-A-G-A-AGCGCATTG-T----AC-T-GA--A-AATT-TAG-----T-TC-------------C-AC-ACAGC-TG------------CGTC-TTGA-G--AAG--GG--AAG-------T-GAAAAAGGA----GG--CTGT-C-TTGC---AAGTAGAA-TGATACA-A--TG----GA-CTAA--AC---CA-------------CTAA-C-A--AT------------AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAT--TTT---GTACAGT-----ATG--CC-TTTAA-CTCT--T-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAA-ACA----A
gi|7 : AATT-ATCT---ATG------------CAT-ATAT--AATGA-A-G-ATAGCGTATTT-TTACTAT-T-GATTA-AATT-AATAGACAT-TCTGAAAGCATCACTC-AT-GCAGC-TGTTTA--------CATC-T-GATG--CAA--GATCGAT-------T-TATAATGGAT---GG--CTAT-C-T-GC---AAGTTGGA-GCCTA---A--TG----TA-CTAA--AT---TAGTGACTTTTTAATCTGA-C-ACCATCTAGTTTGCCGGAT---TT---T-TTCCAAGATTTCTA---GG-T-TATA----A-GT-GAAAGAGATG-T-GG-T--T--A-CA---TCT---GTTCAGT-----ATCATCCATTTAG--TCT--T-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAA-ACATGATATAAT-CATTTAAAC-ATT-------------TAATCT----------TCGGAACGAACAATTTACTACGGTAGGCCGGTA-GCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCA--TA-TGCAG-TTA-CT-TTTCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTA---TAA-GGGGTAATATCTCATGTGTAACTTATCATGC-AATACGAATAAGCTTA-TGTACGACCTG-TTTAATAAAACAGCATATA-----ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTGC-AAATTGGCACGATCTTTT-
gi|12 : -G-A-AGCACATTG-T----AC-T-GA--A-AATT-TAG-----T-TG-------------C-AC-ACAGC-TG------------CACG-TTGA-G--AAG--GG--AAG-------T-GAAAAGAGA----GG--CTGT-T-TTGC---AAGTAAAA-TGTTACA-A--TA----TA-CTAA--AC---CA-------------CTAA-C-A--AT------------AT---ATCA-T-TTCCG----TTC-A---GT-T-TA-A----A-GT-GAAACA--T--TTGG-C--T--A-CAA--TTT---------------------------A-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAA-ACA----ATGgctct
gi|34 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctG--AAG-------T-GAAAAAGGA----GG--CTGT-C-TTGC---AAGTATAA-
gi|17 : A----GT--CTAT-C-TGGC---AAGTAGA--T-TTACA-A--TG----GA-CTAA--AA---CA-------------CTAA-C-A--AT------------AT---TTCA-T-TTCCA-----TC-AGGTGT-T-AA-A----A-GT-GAAACA--T--TTTG-T--C--ACCAACTTTT---GGTCA---------------TT--G-CTCT--T-CGT-CA-GTG---AAGAAGTAAAGAT
gi|21 : --CTAT-C-TGGC---AAGTAGAT-TGTTACA-A--TG----GA-CTGA--AC----A-------------CTAAAC-A--AT------------AT---TTCA-T-TTCCA----TTC-AAG-GTGT-TA-A----A-GT-GAAACC--T--TTTG-T--C--A-CAA--CTTTTGGTTCA-T-----GTG--C----------CT--T-CGT-CA-GTGC-AAGGAAGTAAAGAgttttggtaataattaacaagttgtccacatttgg
gi|18 : t-TTGC---AA-TAGGA-TTTTACG-ACATG----GA-CTAA--ACAC-CA-------------CTAA-CCA--AG------------AT---TTCA-T-T-CCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG-TCGC--A-CAA--TTTG--GTTCAG---------------TTAG-CTCT--TACGT-CA-GTGCGAAGGAAGTAAAGAT
gi|28 : aagtagattgtctagtcatA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTCT--T-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAA-ACA----ATAA
gi|35 : tTAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|25 : ACGGATAATTTGCTAC--G------GTA-GCCGGGAAAT-A--TATCCTTTCTAAAGATTGAAA-TAACATTGATG---TGTAATAACTTGCTTTCCA--TA-TGCAG-TTA-CT-TTTCCCTA
gi|14 : CT-TTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAAAG---------AGTCAAGTC-AA-GTTTAGAT-------GTA-AAATTTAAAGT-CTCCTTGAGACTGA-------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAG---TACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTAT-G-CA----TCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCA----------C----TTAT-CTCTAAT-AACAAAT--GC
gi|20 : -TTTCTGATA-AACTA---GTG-CTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA----AGCA---G---AGCCAAGTC--A-GTT----------------AGATTT-AACT-TTC-TTAA-
gi|19 : TTC-GATA-AACGA---GTGGCTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA----AGCA---G---AGCCAAGTC--A-GTT----------------AGATTT-AACT-TTC-TTAA-tatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|27 : tgctcgTA-CCGGATGCAG-CAG-TTGATAAAA----GA-TGGA----AGCA---G---AATCAATTC-AA-GTTTAGAT-------GTA-AAATTTAAAGT-CTC-TTtatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|11 : gaaatgaattggtactcttttcccataAA-TTGATAAAA----GAGCGAT----AGCA---G---AAGCAAGTCCAA-ATTTAGAT-------GTG--CATATTAACT-TTC-TTGA-ACTGG--------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAA---GACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC-----AAAT-GCCA----GCCAC-AACACC-ATGATGAA-ATTACTG-AAATT-GAAGTGTACGA------TGTTAACT-ATT-A-AACCATGATCCGACTTTCTTCCA----------C----TTAT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTA
gi|23 : tAAATT-TTA-ATGT-AATGA-------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGG---TACATACAGCTTGAAAT-AA-ATTC------------A-----ATAT-G-CA----GCAGCAAACATT-ATG--GAATATTAt
gi|20 : aTTAACTTTCTTAA------TATCG-CA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------T
gi|19 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatTTAACTTTCTTAA------TATCG-CA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Tac
gi|16 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACTTTCTTAA------TATCG-CA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACA-TCT--------------CCACTTTAT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAac
gi|15 : taACTTTCTTAA------TATCG-CA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACA-TCT--------------CCACTTTAT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|22 : taTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCACTTGTGACCAC----TTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAt
gi|29 : T-A-AAACATGGCCC-ACATTCTCCA-----------C----TTATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|30 : --------------C----TTAT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGTt
gi|32 : tcca--------------C----TTAT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|31 : ccaAT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT
Alignments
lowQualScore : 11111111 1111 111111111111 22222222222222222222222 111 66666666666 11111111 111 111 22222 111 111111 333333333333333 22222222222222 1111 22 1 111111 1111111111 111
lowQualScore : 555 3 3 3 22222222 3 66 333 44 3 3 44 44 3 44 3 3 7777 6 3 0000 3 6 3 555 3 3 6 44 333 3 3 6 3 6 3 3 3 3 3 888888888888 3 55 55 1 6 2 8888888 444 44444444444444444444444 2 0 2 33 8888 2 33 888 2 2 33 777 2 2 5555 88888 2 2 2 5555 2 2 5 1 33 99 2 33 55 2 2 55 666 8888888888888 2 33 2 2 2 4 555 3 77 3 333 2 88888888888 4 4 66666666 4 66 4 7 111 66 4 4 4 4 4 2 5 888 5 000 5 0 5 5 5 0 33333 77 4 5 5 555 4 4 2 777 4 4 8 4 3 0 7777 3 55 000000 3 3 777777777777777 3 1 3 3 3 00000000000000 2 5 5 66 888 5 5 5 0 2 3333 11 7777 3 3 44 7 3 3 999999 1 6 3 7 6 6 3333333333 3 3 444 44 3 6 99 3 111 3 3 3 6 8
lowQualScore : ... . . . ........ . .. ... .. . . .. .. . .. . . .... . . .... . . . ... . . . .. ... . . . . . . . . . . ............ . .. .. . . . ....... ... ....................... . . . .. .... . .. ... . . .. ... . . .... ..... . . . .... . . . . .. .. . .. .. . . .. ... ............. . .. . . . . ... . .. . ... . ........... . . ........ . .. . . ... .. . . . . . . . ... . ... . . . . . . ..... .. . . . ... . . . ... . . . . . . .... . .. ...... . . ............... . . . . . .............. . . . .. ... . . . . . .... .. .... . . .. . . . ...... . . . . . . .......... . . ... .. . . .. . ... . . . . .
lowQualScore : 888 3 3 3 11111111 2 44 888 66 3 3 22 22 1 22 1 3 1111 7 3 7777 3 7 3 888 3 3 7 66 888 3 3 7 3 7 6 6 6 6 6 666666666666 6 00 00 0 7 7 7777777 777 77777777777777777777777 7 7 9 99 9999 9 99 999 9 9 77 333 7 7 7777 44444 7 7 7 7777 7 7 3 0 44 77 5 44 99 5 5 99 999 7777777777777 4 22 4 4 4 7 444 1 33 3 111 0 22222222222 4 4 11111111 4 11 4 3 888 11 4 4 4 4 2 4 0 888 0 000 7 7 7 7 7 7 99999 99 3 7 7 444 4 4 9 888 4 0 0 0 6 2 7777 6 00 555555 6 6 333333333333333 5 2 3 3 6 88888888888888 5 0 9 99 888 6 0 0 7 2 2222 88 1111 3 3 66 3 3 3 222222 4 0 6 3 4 7 5555555555 1 1 999 66 3 7 22 3 777 3 3 3 7 8
consensus : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-G-AAAAA--TG-TT-GGT--T--A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACA-TTTAATCT-TCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTG-CAAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTT-ACCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCA-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( family-1257 ) : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-G-AAANA--TG-TT-GGT--T--A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATN--ATCATTTAAAC--TTTA-----TCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTG-CAAATTGGCATGATCTTTT-CNCT-TTTCTGATT-AACTAGT---G-CTTT-ACCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGGAAT-AA-ATTCTTCACTTTCTTAA---ATAT-CGCA----GCAGCA-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|1 : ACATTACCAAA---TT-CGG-TA-------------------------T-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----TTATTG-CAAAA-A--GTGG-GA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--ATAA-A-G-AAGTGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TATTAACACAGCTTCGTT-TTG--AG--AAGGGACGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CT------------TGA-C---T--AT-----CA-T-TTCCA----TT------AT-T-TA-ACTATA-CT-G-AAACA--TT-TT-GGT--T--A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAAACA-A-------A-CATTTGATC--TTT--------GGAATGGATAATTTACTAC-GGTA-G--------CCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ACGTAATAATTTGCTTTCCAG--AT-GCAG-TTACT-TTTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAAGGGA-TAATATCTCATGCATAACTA---TTAC-AATATGA-TAA--TTA-TGTACGACCTGTTT-AA-TAAAACAACATATATAT----TTT--TAGCACGATATGGCTTCCGTATAAA-AATTG-CAAATTAGCATGATCTTTT-GCTC-TTTCTGATT-GGCTAATTATG-CTTT-ACCGGATGCAA-CAG-TTGATAAAA----GA-TGGA--AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTAACATTCAAAGT-CTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA---ATAT--GCATGCTGCAGCG-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGT
gi|10 : aaACTACA---ATGTGG-TAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAA--A-CT--T-CG-TGA----T-GTTG-CAAAATA--GTGG-GA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--ATAATA-G-AAACAC-CTG-TACTT-GAA-AATTGTAGTATCC-AC-ACAGC--G------------CGTC-TTG--AGGAAAGGGAAG-----------GTCTGT-C--------TGC---AAGTAGATTTTAGTTCTATCTTTGCAATAGA-TTTTACA-A--TG----GA-CTTA--ACACGCACTAA-C-AAT--ATGCATTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-G-AAACA--TT-TT-GG---C--A-C-AAT-TTT---GTTCAGT------TA--C----TA----C--TT-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--TAA
gi|11 : AA-TTGATAAAA----GAGCGAT--AGCAGA------AGCAAGTCCAA-ATTTAGATGTGC------ATATT--AACT-TTC-TTGA-ACTG-------G-------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAAG---ACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC---AAAT-GCCA----GC--CACAACACC-ATGATGAA-ATTACTGAAATTG--AAGTGTACGA------TGTTAACT-ATT-A-AACCATGATCCGACTTTCTTCCAC-TT----------AT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTAtatacatcatt
gi|12 : tATTACCAAA---TT-AGG-TAATTGTTTG--------TTGGTGC-AT-A-TG--AA-CAA-GAGTG--GAA--A-TC--T-Ct
gi|12 : a-G-AAGCACATTG-TAC-T-GAA-AATT-TAGT-TGC-AC-ACAGC-TG------------CACG-TTG--AG--AAGGGAAGT-GAAAAGAGAGGCTGT-TT-------TGC---AAGTAAA-----------------------A-TGTTACA-A--TA----TA-CTAA--AC---CACTAA-C-AAT--AT---ATCA-T-TTCCG----TTC-A---GT-T-TA-A----A-GT-G-AAACA--T--TT-GGC--T--A-C-AA--TTT---------------------------A-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAAACA-ATGagtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|13 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctATG--GAA--A-TC--T-CG-TGA----T-GTTG-CAAAA-A--GTGG-TA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGATACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-G-AAAAA--TG-TT-GGT--T--A-C-AT--TTT---GTACAGT-----ATG--CC-TTTAA-CTC--TT-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAAACA-A
gi|14 : CT-TTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAA-AGA------GTCAAGTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTCCTTGAGACTG-------A------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAGT---ACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTATGCA----TCAGCG-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--GC
gi|15 : ACTTTCTTAA----TAT-CGCA----GCAGCA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTA
gi|16 : taACTTTCTTAA----TAT-CGCA----GCAGCA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|17 : taAGTCTAT-CT-------GGC---AAGTAGA-------------------------T-TTACA-A--TG----GA-CTAA--AA---CACTAA-C-AAT--AT---TTCA-T-TTCCA-----TC-AGGTGT-T-AA-A----A-GT-G-AAACA--T--TT-TGT--C--ACC-AACTTTT---GGTCA---------------TT--G-CTC--TT-CGT-CA-GTG---AAGAAGTAAAGATt
gi|18 : AAGTAGATTGT-CTAGTCATTTGC---AA-TAGG-----------------------A-TTTTACG-ACATG----GA-CTAA--ACAC-CACTAA-CCAAG--AT---TTCA-T-T-CCA----TTC-A---GT-T-TA-A----A-GT-G-AAACA--TT-TT-GGTCGC--A-C-AA--TTTG--GTTCAG---------------TTAG-CTC--TTACGT-CA-GTGCGAAGGAAGTAAAGATgttttggtaataattaacaagttgtccacatttgg
gi|19 : TTC-GATA-AACGAGT---GGCTTT-AC--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|19 : tgctcgTTAACTTTCTTAA----TAT-CGCA----GCAGCA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|2 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA----TC--T-CA-TGA----T-ATTG-CAAAA-AA-GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA---G-AAGCGCATTT-TAC-T-GAA-AATT--ATT-TCCCACCACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GAACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----AAGT-G-AAAAA--TG-TT-GGT--TTTA-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCA-----AT--TTT-------CGGAACGGACAATTTACTAC-TG-A-G--------CCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA-----GGG-TAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAA-TGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTG-CAAATTGGCATGATCTTTT-CCTT-TTTCTGATT-AACTAGT---G-CTTT-ACCAGATGCAA-CAATTTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGAT-TG-------ACATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA---ATAT--GCA----GCAGCA-AACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATGac
gi|20 : -TTTCTGATA-AACTAGT---G-CTTT-AC--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|20 : TTAACTTTCTTAA----TAT-CGCA----GCAGCA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|21 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatCTAT-CT-------GGC---AAGTAGA-----------------------T-TGTTACA-A--TG----GA-CTGA--AC----ACTAAAC-AAT--AT---TTCA-T-TTCCA----TTC-AAG-GTGT-TA-A----A-GT-G-AAACC--T--TT-TGT--C--A-C-AA--CTTTTGGTTCA-T-----GTG--C----------C--TT-CGT-CA-GTGC-AAGGAAGTAAAGAac
gi|22 : tTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCAC-TTGTGACCACTTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTA
gi|23 : AAATT-TTA-ATGT-AATG-------A------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGGT---ACATACAGCTTGAAAT-AA-ATTC------------A---ATAT--GCA----GCAGCA-AACATT-ATG--GAATATTA
gi|24 : aACATTACCAAA---AT-TGG-TACTT-TTTG--------TTGT------------------A-GAATG--GAA--A--------G--GA----T-ATTG-CAAAA-A--GTGG-GA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--ATAA-A-G-AAGCGTATTG-TAC-T-GAA-AA
gi|25 : ACGGATAATTTGCTAC-GGTA-G--------CCGGGAAA-TA--TATCCTTTCTAAAGATTGAAA-TAACATTGATG---TGTAATAACTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TA
gi|26 : ATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCG-AC-A-TG--AA-CAA-GAATG--AAA--A-TC--T-CG-TGA----T-ATTG-CTNAA-A--GAGGAGA-AA--AT----TCT---AT----ATCAGA-ATCAT--TAT--AT
gi|27 : T-ACCGGATGCAG-CAG-TTGATAAAA----GA-TGGA--AGCAGA------ATCAATTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTC-TTta
gi|28 : gaaatgaattggtactcttttcccataA--TT-TT-GGT--T--A-C-AA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTC--TT-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAAACA-ATAA
gi|29 : tT-A-AAACATGGCCC-ACATTC-TCCAC-TT----------ATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|3 : ACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTT-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-G-AAAAA--TG-TT-GGT--T--A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCATTT---------------TCGGAACGGACAATTTACTAC-TGTA-G--------CCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA---ATGGG-TAATATCTCAAGCATAACTT---ATGC-AATAAGAATAAGCTTA-TGTACGACCTGTTA-AA-TGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTG-CAAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTT-ACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGATGTG-------ACATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCA-AACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGTt
gi|30 : TCCAC-TT----------AT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|31 : ----------AT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|32 : CCAC-TT----------AT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|34 : GAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTATA-----------------------A-
gi|35 : TAG-CTC--TT-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|4 : ATTACCAAT---AT-TGG-TAATT-TTTG--------TTGT-CC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAG-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGACAA--AATGGACGT-GGAAAAG--GGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTC--T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA--CG-AT-GGT--T--A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGG-AGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACA-TTTAATCT-TCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTC-TTCTAAAGATTAAAA-TGGCAT---TGATATGTAAT-ATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATATATA-----TTT--TAGCACGATATAGCTTCCGTACAAA-CATTG-CAAATTGCCATGATCTTTTGCTCT-TTTCTGATT-AACTAGT---G-CTTT-ACCAGATGCAA-CAA-TTGAT-AAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTG-------GCCGCGCGCAAG-TTAAGTATTATGAAAGAAATT--ATTCGGTCAAAAA-GT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCA-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGT-ATT-A-AAACATG--CCAACATTCTTCCAC-TT----------TT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|5 : TACCAAT---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTG--AC--AATGGACGT-GGAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA--CGATTGGGT--T--A-CAAA--TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACA-TTTAATT--TCGGAACGGACAATTTACTAC-GGTA----------CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCAT---TGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATATATA-----TTT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTT-TGCTCTTTCTGATT-AACTAGT---G-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCG------GCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA---ATAT--GCA----GCAGCA-AACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCTTCC
gi|6 : TTAC--AA---AT-TGG-TAAGT-TGCT--------TTGTTCC-ATCA-TG--AA-CAA-GAATG--GAA--ACTC--TTCG-TGA----TTATTG-CAAAA-AAAGTGG-GACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGATAA-G-G-AAGCGTAT-G-TAC-T-GAACAAT---AGT-TTC-AC-ACAGCCTG------------CGTCCTTG--AG--CAGGGACGT-GAAAAAGGAGGCTGT-CC-------TGC---AAGTAGA-----------------------ACTGCTACA-A--TAA---GA-CTAA--AC---CACTAA----AT--AT---TTCA-T-TTCCA----TT------AT-T-TT-A----A-GT-G-AAAAA--TG-T--GGT--T--A-C-AA--TTT---GTTCAGT-----AT---CT-CTTAG--TC--T--CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAAACACATGATAC-ATCATTTAAACGTTTTAAATCTTCGGAACGGACAACTTACTACAGGTAAG--------CCGG-AAA-TGACTCTTTTCTATAAAGATTGAAA-TGGCATTGAT--CATGTAATAATTTGCTTTCCATTTATTGCAGATTACTATTTCCC-TATTA-----------CATAG---AT-AAAATGCCATAGGATTTTATA---AGGGGGTACTATC-CATGCGTAA-TT---ATGC-AATACGAATAATCTTA-TGTACGACCTGTTT-AATTAAAAAA----ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTG-CAAA-TGGCTTGATCTTTT--GCT-CTTCTGACTAAACTA-T---G-CTTT-ACC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA--AACAGA------GCAACGTC-AAGGTTTAGA-GTGA------ACATTAACAGTATTC-TTGA-ACT--------G------GCAAGTTTAAG
gi|7 : --AT---TT---T-TTCCAAGATTTCTA---GG-T-TATA----A-GT-G-AAAGAGATG-T--GGT--T--A-C-A---TCT---GTTCAGT-----ATCATCCATTTAG--TC--TT-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAAACA--TGATATAATCATTTAAACA-TTTAATCT-TCGGAACGAACAATTTACTAC-GGTA-GGCCGGTAGCCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGTGTAACTTATCATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAG----CATATA-ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTG-CAAATTGGCACGATCTTTTGCTCT-gtta
gi|8 : aattatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCATTAC--AA---AT-TGG-TAATT-GTT----------TGTTCC-AT----G--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA----GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--ATAA-A-GGAAGCGTAT-G-TAC-TTGAA-AATT-TAGT-TTC-AC-ACAGC-TG------------CGTC-TTG--AG--CAGGGACGTCGAAAAAGGAG-CTGT-CC-------TGC---AAGTAGA-----------------------A-TGCT-CA-A--TA----GA-C-AA--AC---CA-TAA-C-A-T--AT-----CA-TCTTCCA----TT------AT-T-TT-A----A-GT-G-AAAAA--TG-TT-GGT--T--A-C-AA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACT-TTTAATCT-TCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAA-------------GAAT-AGAATGCCATGGGATTTTATA---AGGGG-T-ATATCTCATGCGTAA
gi|9 : CCAAATTTGT-TGGATAAGT-TTTGATCTGGGATTGTGC--AT-A-TG--AAACAAAGAATG--GAACTA-TGAAT-CGATGGGATTT-ATTGGTAAAA-A--ATTC-GAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--ATAA-AAG-AAGCGCATTGGTACAT-GAATAATT-TAGT---C-AC-GCAGC-TC------------CGTC-TTC--AG--AAGGAAAGTTGAAAAGGGAGGCTGTTCT-------TGCCATAGGTAAT-----------------------A-TGTT-CAGA--TGTATTGA-CTAACAAC---TACTA--C-AATCTATG--TTCAGT-TTCCA----TTC-C---GT-TATA-A----A-GTTG-AAAAC--TT-TT-GGT--TT-A-C-A---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-AACA-ATGATA--AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT
Alignments
lowQualScore : 11111111 1111 111111111111 22222222222222222222222 11111 11 11111111 333 111 1 2222 111 111111 333333333333333 2222222 1111 22 1 111111 1111111111 111
lowQualScore : 555 3 3 3 22222222 3 66 333 44 3 3 44 44 3 44 3 3 7777 6 3 0000 3 6 3 555 3 3 6 44 333 3 3 6 3 6 3 3 3 3 3 888888888888 3 55 55 1 6 2 8888888 444 44444444444444444444444 2 0 2 33 8888 2 33 888 2 2 33 777 2 2 5555 88888 2 2 2 5555 2 2 1 11111 2 33 55 2 88 666 8888888888888 2 33 2 2 2 4 555 3 77 3 33 3 2 66 1 4 4 66666666 4 66 4 333 66 4 4 4 4 4 2 5 888 5 000 5 0 5 1 0 6666 77 4 5 5 111 5 4 2 777 4 4 8 4 3 0 7777 3 55 000000 3 3 777777777777777 3 1 3 3 3 7777777 1 2 5 5 66 888 5 5 5 0 0 3333 11 7777 3 44 7 3 3 999999 1 3 3 7 6 6 3333333333 3 3 444 44 3 6 99 3 111 3 3 3 6 8
lowQualScore : ... . . . ........ . .. ... .. . . .. .. . .. . . .... . . .... . . . ... . . . .. ... . . . . . . . . . . ............ . .. .. . . . ....... ... ....................... . . . .. .... . .. ... . . .. ... . . .... ..... . . . .... . . . ..... . .. .. . .. ... ............. . .. . . . . ... . .. . .. . . .. . . . ........ . .. . ... .. . . . . . . . ... . ... . . . . . .... .. . . . ... . . . ... . . . . . . .... . .. ...... . . ............... . . . . . ....... . . . . .. ... . . . . . .... .. .... . .. . . . ...... . . . . . . .......... . . ... .. . . .. . ... . . . . .
lowQualScore : 888 3 3 3 11111111 2 44 888 66 3 3 22 22 1 22 1 3 1111 7 3 7777 3 7 3 888 3 3 7 66 888 3 3 7 3 7 6 6 6 6 6 666666666666 6 00 00 0 7 7 7777777 777 77777777777777777777777 7 7 9 99 9999 9 99 999 9 9 77 333 7 7 7777 44444 7 7 7 7777 7 7 6 00000 5 44 99 5 44 999 7777777777777 4 22 4 4 4 7 444 1 33 1 55 1 1 99 4 4 4 11111111 4 11 4 666 11 4 4 4 4 2 4 0 888 0 000 7 7 7 4 7 0000 99 3 7 7 999 0 4 9 888 4 0 0 0 6 2 7777 6 00 555555 6 6 333333333333333 5 2 3 3 6 2222222 9 5 0 9 99 888 6 0 0 7 2 2222 88 1111 3 66 3 3 3 222222 4 4 6 3 4 7 5555555555 1 1 999 66 3 7 22 3 777 3 3 3 7 8
consensus : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATG--ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( family-1257 ) : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|1 : ACATTACCAAA---TT-CGG-TA-------------------------T-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----TTATTG-CAAAA-A--GTGG-GA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--ATAA-A-G-AAGTGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TATTAACACAGCTTCGTT-TTGAG--AAG--GGACGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CT------------TGA-C---T--AT-----CA-T-TTCCA----TT------AT-T-TA-ACTATA-CT-GAAACA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAAACA-A----------------ACATTT--GATCTTTGGAATGGATAATTTACTAC-GGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ACGTAATAATTTGCTTTCCAG--AT-GCAG-TTACT-TTTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAAGGGA-TAATATCTCATGCATAACTA---TTACAA-TATGA-TAA--TTAT-GTACGACCTGTTTAA-TAAAACAACATATATAT----TTT--TAGCACGATATGGCTTCCGTATAAA-AATTGC-AAATTAGCATGATCTTTT-GCTC-TTTCTGATT-GGCTAATTATG-CTTTA-CCGGATGCAA-CAG-TTGATAAAA----GA-TGGA--AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTAACATTCAAAGT-CTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA---ATAT--GCATGCTGCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGT
gi|10 : aaACTACA---ATGTGG-TAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAA--A-CT--T-CG-TGA----T-GTTG-CAAAATA--GTGG-GA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--ATAATA-G-AAACAC-CTG-TACTT-GAA-AATTGTAGTATCC-AC-ACAGC--G------------CGTC-TTGAGGAAAG--GGAAG-----------GTCTGT-C--------TGC---AAGTAGATTTTAGTTCTATCTTTGCAATAGA-TTTTACA-A--TG----GA-CTTA--ACACGCACTAA-C-AAT--ATGCATTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG----C--A-CAAT-TTT---GTTCAGT------TA--C----TA----CT--T-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--T----A-AT-ATAC-ATCATT
gi|11 : AA-TTGATAAAA----GAGCGAT--AGCAGA------AGCAAGTCCAA-ATTTAGATGTGC------ATATT--AACT-TTC-TTGA-ACTGG--------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAAG---ACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC---AAAT-GCCA----GCCACAA-CACC-ATGATGAA-ATTACTGAAATTG-AA-GTGTACGA------TGTTAACTA-TT-A-AACCATGATCCGACTTTCTTCCAC-TT----------AT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTA
gi|12 : tATTACCAAA---TT-AGG-TAATTGTTTG--------TTGGTGC-AT-A-TG--AA-CAA-GAGTG--GAA--A-TC--T-Ct
gi|12 : a-G-AAGCACATTG-TAC-T-GAA-AATT-TAGT-TGC-AC-ACAGC-TG------------CACG-TTGAG--AAG--GGAAGT-GAAAAGAGAGGCTGT-TT-------TGC---AAGTAAA-----------------------A-TGTTACA-A--TA----TA-CTAA--AC---CACTAA-C-AAT--AT---ATCA-T-TTCCG----TTC-A---GT-T-TA-A----A-GT-GAAACA--T--TTGG-C--T--A-CAA--TTT---------------------------A-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAAACA-ATGagtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|13 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctATG--GAA--A-TC--T-CG-TGA----T-GTTG-CAAAA-A--GTGG-TA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGATACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAT--TTT---GTACAGT-----ATG--CC-TTTAA-CTCT--T-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAAACA-A
gi|14 : CT-TTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAA-AGA------GTCAAGTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTCCTTGAGACTGA-------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAGT---ACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTATGCA----TCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--GC
gi|15 : ACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTA
gi|16 : taACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|17 : taAGTCTAT-CT-------GGC---AAGTAGA-------------------------T-TTACA-A--TG----GA-CTAA--AA---CACTAA-C-AAT--AT---TTCA-T-TTCCA-----TC-AGGTGT-T-AA-A----A-GT-GAAACA--T--TTTG-T--C--ACCAACTTTT---GGTCA---------------TT--G-CTCT--T-CGT-CA-GTG---AAGAAGTAAAGATt
gi|18 : AAGTAGATTGT-CTAGTCATTTGC---AA-TAGG-----------------------A-TTTTACG-ACATG----GA-CTAA--ACAC-CACTAA-CCAAG--AT---TTCA-T-T-CCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG-TCGC--A-CAA--TTTG--GTTCAG---------------TTAG-CTCT--TACGT-CA-GTGCGAAGGAAGTAAAGATgttttggtaataattaacaagttgtccacatttgg
gi|19 : TTC-GATA-AACGAGT---GGCTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|19 : tgctcgTTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|2 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA----TC--T-CA-TGA----T-ATTG-CAAAA-AA-GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA---G-AAGCGCATTT-TAC-T-GAA-AATT--ATT-TCCCACCACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GAACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----AAGT-GAAAAA--TG-TTGG-T--TTTA-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCA--------------ATTTTCGGAACGGACAATTTACTAC-TG-A-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA-----GGG-TAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAATGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCTT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAATTTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGAT-TG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA---ATAT--GCA----GCAGCAAACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATGac
gi|20 : -TTTCTGATA-AACTAGT---G-CTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|20 : TTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|21 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatCTAT-CT-------GGC---AAGTAGA-----------------------T-TGTTACA-A--TG----GA-CTGA--AC----ACTAAAC-AAT--AT---TTCA-T-TTCCA----TTC-AAG-GTGT-TA-A----A-GT-GAAACC--T--TTTG-T--C--A-CAA--CTTTTGGTTCA-T-----GTG--C----------CT--T-CGT-CA-GTGC-AAGGAAGTAAAGAac
gi|22 : tTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCAC-TTGTGACCACTTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTA
gi|23 : AAATT-TTA-ATGT-AATGA-------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGGT---ACATACAGCTTGAAAT-AA-ATTC------------A---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTA
gi|24 : aACATTACCAAA---AT-TGG-TACTT-TTTG--------TTGT------------------A-GAATG--GAA--A--------G--GA----T-ATTG-CAAAA-A--GTGG-GA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--ATAA-A-G-AAGCGTATTG-TAC-T-GAA-AA
gi|25 : ACGGATAATTTGCTAC-GGTA-G--------CCGGGAAAT-A--TATCCTTTCTAAAGATTGAAA-TAACATTGATG---TGTAATAACTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TA
gi|26 : ATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCG-AC-A-TG--AA-CAA-GAATG--AAA--A-TC--T-CG-TGA----T-ATTG-CTNAA-A--GAGGAGA-AA--AT----TCT---AT----ATCAGA-ATCAT--TAT--AT
gi|27 : TA-CCGGATGCAG-CAG-TTGATAAAA----GA-TGGA--AGCAGA------ATCAATTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTC-TTta
gi|28 : gaaatgaattggtactcttttcccataA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTCT--T-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAAACA-ATAA
gi|29 : tT-A-AAACATGGCCC-ACATTC-TCCAC-TT----------ATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|3 : ACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTT-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCATTT---------------TCGGAACGGACAATTTACTAC-TGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA---ATGGG-TAATATCTCAAGCATAACTT---ATGCAA-TAAGAATAAGCTTAT-GTACGACCTGTTAAA-TGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGATGTG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGTt
gi|30 : TCCAC-TT----------AT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|31 : ----------AT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|32 : CCAC-TT----------AT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|34 : GAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTATA-----------------------A-
gi|35 : TAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|4 : ATTACCAAT---AT-TGG-TAATT-TTTG--------TTGT-CC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAG-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAAATGGACGT-GGAAAAGG--GCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTC--T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CG-ATGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGA-GTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTT-CTAAAGATTAAAA-TGGCATTGAT---ATGTAATA-TTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGCCATGATCTTTTGCTCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAA-----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGC-GCAAGTT-AAGTATTATGAAAGAAATTA--TTCGGTCAAAAAG-T--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGTA-TT-A-AAACATG--CCAACATTCTTCCAC-TT----------TT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|5 : TACCAAT---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAT--GGACGT-GGAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CGATTGGGT--T--A-CAAA-TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AAT-TTCGGAACGGACAATTTACTAC-GGTA----------CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTT-TGCTCTTTCTGATT-AACTAGT---G-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCGGCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCTTCC
gi|6 : TTAC--AA---AT-TGG-TAAGT-TGCT--------TTGTTCC-ATCA-TG--AA-CAA-GAATG--GAA--ACTC--TTCG-TGA----TTATTG-CAAAA-AAAGTGG-GACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGATAA-G-G-AAGCGTAT-G-TAC-T-GAACAAT---AGT-TTC-AC-ACAGCCTG------------CGTCCTTGAG--CAG--GGACGT-GAAAAAGGAGGCTGT-CC-------TGC---AAGTAGA-----------------------ACTGCTACA-A--TAA---GA-CTAA--AC---CACTAA----AT--AT---TTCA-T-TTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-T-GG-T--T--A-CAA--TTT---GTTCAGT-----AT---CT-CTTAG--TCT----CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAAACACATGATAC-ATCATTTAAACGTTTTAAATCTTCGGAACGGACAACTTACTACAGGTAAG--------CCGG-AAAT-GACTCTTTTCTATAAAGATTGAAA-TGGCATTGAT--CATGTAATAATTTGCTTTCCATTTATTGCAGATTACTATTTCCC-TATTA-----------CATAG---AT-AAAATGCCATAGGATTTTATA---AGGGGGTACTATC-CATGCGTAA-TT---ATGCAA-TACGAATAATCTTAT-GTACGACCTGTTTAATTAAAAAA----ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTGC-AAA-TGGCTTGATCTTTT--GCT-CTTCTGACTAAACTA-T---G-CTTTA-CC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA--AACAGA------GCAACGTC-AAGGTTTAGA-GTGA------ACATTAACAGTATTC-TTGA-ACT-G-------GCAAGTTTAAG
gi|7 : --AT---TT---T-TTCCAAGATTTCTA---GG-T-TATA----A-GT-GAAAGAGATG-T-GG-T--T--A-CA---TCT---GTTCAGT-----ATCATCCATTTAG--TCT--T-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAAACA--TGATATAATCATTTAAACATTT--AATCTTCGGAACGAACAATTTACTAC-GGTA-GGCCGGTAGCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGTGTAACTTATCATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAG----CATATA-ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTGC-AAATTGGCACGATCTTTT-gtta
gi|8 : aattatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCATTAC--AA---AT-TGG-TAATT-GTT----------TGTTCC-AT----G--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA----GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--ATAA-A-GGAAGCGTAT-G-TAC-TTGAA-AATT-TAGT-TTC-AC-ACAGC-TG------------CGTC-TTGAG--CAG--GGACGTCGAAAAAGGAG-CTGT-CC-------TGC---AAGTAGA-----------------------A-TGCT-CA-A--TA----GA-C-AA--AC---CA-TAA-C-A-T--AT-----CA-TCTTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACTTTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAA-------------GAAT-AGAATGCCATGGGATTTTATA---AGGGG-T-ATATCTCATGCGTAAgctct
gi|9 : CCAAATTTGT-TGGATAAGT-TTTGATCTGGGATTGTGC--AT-A-TG--AAACAAAGAATG--GAACTA-TGAAT-CGATGGGATTT-ATTGGTAAAA-A--ATTC-GAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--ATAA-AAG-AAGCGCATTGGTACAT-GAATAATT-TAGT---C-AC-GCAGC-TC------------CGTC-TTCAG--AAG--GAAAGTTGAAAAGGGAGGCTGTTCT-------TGCCATAGGTAAT-----------------------A-TGTT-CAGA--TGTATTGA-CTAACAAC---TACTA--C-AATCTATG--TTCAGT-TTCCA----TTC-C---GT-TATA-A----A-GTTGAAAAC--TT-TTGG-T--TT-A-CA---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-AACA-ATGATA--AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT
Alignments
lowQualScore : 11111111 1111 111111111111 22222222222222222222222 11111 11 11111111 22222 111 1 2222 111 111111 333333333333333 2222222 1111 22 1 111111 1111111111 111
lowQualScore : 555 3 3 3 22222222 3 66 333 44 3 3 44 44 3 44 3 3 7777 6 3 0000 3 6 3 555 3 3 6 44 333 3 3 6 3 6 3 3 3 3 3 888888888888 3 55 55 1 6 2 8888888 444 44444444444444444444444 2 0 2 33 8888 2 33 888 2 2 33 777 2 2 5555 88888 2 2 2 5555 2 2 1 11111 2 33 55 2 88 666 8888888888888 2 33 2 2 2 4 555 3 77 3 33 3 2 66 1 4 4 66666666 4 66 4 11111 66 4 4 4 4 4 2 5 888 5 000 5 0 5 1 0 6666 77 4 5 5 111 5 4 2 777 4 4 8 4 3 0 7777 3 55 000000 3 3 777777777777777 3 1 3 3 3 7777777 1 2 5 5 66 888 5 5 5 0 0 3333 11 7777 3 44 7 3 3 999999 1 3 3 7 6 6 3333333333 3 3 444 44 3 6 99 3 111 3 3 3 6 8
lowQualScore : ... . . . ........ . .. ... .. . . .. .. . .. . . .... . . .... . . . ... . . . .. ... . . . . . . . . . . ............ . .. .. . . . ....... ... ....................... . . . .. .... . .. ... . . .. ... . . .... ..... . . . .... . . . ..... . .. .. . .. ... ............. . .. . . . . ... . .. . .. . . .. . . . ........ . .. . ..... .. . . . . . . . ... . ... . . . . . .... .. . . . ... . . . ... . . . . . . .... . .. ...... . . ............... . . . . . ....... . . . . .. ... . . . . . .... .. .... . .. . . . ...... . . . . . . .......... . . ... .. . . .. . ... . . . . .
lowQualScore : 888 3 3 3 11111111 2 44 888 66 3 3 22 22 1 22 1 3 1111 7 3 7777 3 7 3 888 3 3 7 66 888 3 3 7 3 7 6 6 6 6 6 666666666666 6 00 00 0 7 7 7777777 777 77777777777777777777777 7 7 9 99 9999 9 99 999 9 9 77 333 7 7 7777 44444 7 7 7 7777 7 7 6 00000 5 44 99 5 44 999 7777777777777 4 22 4 4 4 7 444 1 33 1 55 1 1 99 4 4 4 11111111 4 11 4 99999 11 4 4 4 4 2 4 0 888 0 000 7 7 7 4 7 0000 99 3 7 7 999 0 4 9 888 4 0 0 0 6 2 7777 6 00 555555 6 6 333333333333333 5 2 3 3 6 2222222 9 5 0 9 99 888 6 0 0 7 2 2222 88 1111 3 66 3 3 3 222222 4 4 6 3 4 7 5555555555 1 1 999 66 3 7 22 3 777 3 3 3 7 8
consensus : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT-AT--GTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( family-1257 ) : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGAT--GTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|1 : ACATTACCAAA---TT-CGG-TA-------------------------T-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----TTATTG-CAAAA-A--GTGG-GA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--ATAA-A-G-AAGTGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TATTAACACAGCTTCGTT-TTGAG--AAG--GGACGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CT------------TGA-C---T--AT-----CA-T-TTCCA----TT------AT-T-TA-ACTATA-CT-GAAACA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAAACA-A----------------ACATTT--GATCTTTGGAATGGATAATTTACTAC-GGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT-AC--GTAATAATTTGCTTTCCAG--AT-GCAG-TTACT-TTTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAAGGGA-TAATATCTCATGCATAACTA---TTACAA-TATGA-TAA--TTAT-GTACGACCTGTTTAA-TAAAACAACATATATAT----TTT--TAGCACGATATGGCTTCCGTATAAA-AATTGC-AAATTAGCATGATCTTTT-GCTC-TTTCTGATT-GGCTAATTATG-CTTTA-CCGGATGCAA-CAG-TTGATAAAA----GA-TGGA--AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTAACATTCAAAGT-CTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA---ATAT--GCATGCTGCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGT
gi|10 : aaACTACA---ATGTGG-TAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAA--A-CT--T-CG-TGA----T-GTTG-CAAAATA--GTGG-GA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--ATAATA-G-AAACAC-CTG-TACTT-GAA-AATTGTAGTATCC-AC-ACAGC--G------------CGTC-TTGAGGAAAG--GGAAG-----------GTCTGT-C--------TGC---AAGTAGATTTTAGTTCTATCTTTGCAATAGA-TTTTACA-A--TG----GA-CTTA--ACACGCACTAA-C-AAT--ATGCATTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG----C--A-CAAT-TTT---GTTCAGT------TA--C----TA----CT--T-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--T----A-AT-ATAC-ATCATT
gi|11 : AA-TTGATAAAA----GAGCGAT--AGCAGA------AGCAAGTCCAA-ATTTAGATGTGC------ATATT--AACT-TTC-TTGA-ACTGG--------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAAG---ACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC---AAAT-GCCA----GCCACAA-CACC-ATGATGAA-ATTACTGAAATTG-AA-GTGTACGA------TGTTAACTA-TT-A-AACCATGATCCGACTTTCTTCCAC-TT----------AT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTA
gi|12 : tATTACCAAA---TT-AGG-TAATTGTTTG--------TTGGTGC-AT-A-TG--AA-CAA-GAGTG--GAA--A-TC--T-Ct
gi|12 : a-G-AAGCACATTG-TAC-T-GAA-AATT-TAGT-TGC-AC-ACAGC-TG------------CACG-TTGAG--AAG--GGAAGT-GAAAAGAGAGGCTGT-TT-------TGC---AAGTAAA-----------------------A-TGTTACA-A--TA----TA-CTAA--AC---CACTAA-C-AAT--AT---ATCA-T-TTCCG----TTC-A---GT-T-TA-A----A-GT-GAAACA--T--TTGG-C--T--A-CAA--TTT---------------------------A-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAAACA-ATGagtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|13 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctATG--GAA--A-TC--T-CG-TGA----T-GTTG-CAAAA-A--GTGG-TA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGATACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAT--TTT---GTACAGT-----ATG--CC-TTTAA-CTCT--T-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAAACA-A
gi|14 : CT-TTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAA-AGA------GTCAAGTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTCCTTGAGACTGA-------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAGT---ACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTATGCA----TCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--GC
gi|15 : ACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTA
gi|16 : taACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|17 : taAGTCTAT-CT-------GGC---AAGTAGA-------------------------T-TTACA-A--TG----GA-CTAA--AA---CACTAA-C-AAT--AT---TTCA-T-TTCCA-----TC-AGGTGT-T-AA-A----A-GT-GAAACA--T--TTTG-T--C--ACCAACTTTT---GGTCA---------------TT--G-CTCT--T-CGT-CA-GTG---AAGAAGTAAAGATt
gi|18 : AAGTAGATTGT-CTAGTCATTTGC---AA-TAGG-----------------------A-TTTTACG-ACATG----GA-CTAA--ACAC-CACTAA-CCAAG--AT---TTCA-T-T-CCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG-TCGC--A-CAA--TTTG--GTTCAG---------------TTAG-CTCT--TACGT-CA-GTGCGAAGGAAGTAAAGATgttttggtaataattaacaagttgtccacatttgg
gi|19 : TTC-GATA-AACGAGT---GGCTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC-A--GTT---------------AGATTT-AACT-TTC-TTAA-
gi|19 : tgctcgTTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|2 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA----TC--T-CA-TGA----T-ATTG-CAAAA-AA-GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA---G-AAGCGCATTT-TAC-T-GAA-AATT--ATT-TCCCACCACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GAACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----AAGT-GAAAAA--TG-TTGG-T--TTTA-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCA--------------ATTTTCGGAACGGACAATTTACTAC-TG-A-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA-----GGG-TAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAATGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCTT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAATTTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGAT-TG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA---ATAT--GCA----GCAGCAAACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATGac
gi|20 : -TTTCTGATA-AACTAGT---G-CTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC-A--GTT---------------AGATTT-AACT-TTC-TTAA-
gi|20 : TTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|21 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatCTAT-CT-------GGC---AAGTAGA-----------------------T-TGTTACA-A--TG----GA-CTGA--AC----ACTAAAC-AAT--AT---TTCA-T-TTCCA----TTC-AAG-GTGT-TA-A----A-GT-GAAACC--T--TTTG-T--C--A-CAA--CTTTTGGTTCA-T-----GTG--C----------CT--T-CGT-CA-GTGC-AAGGAAGTAAAGAac
gi|22 : tTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCAC-TTGTGACCACTTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTA
gi|23 : AAATT-TTA-ATGT-AATGA-------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGGT---ACATACAGCTTGAAAT-AA-ATTC------------A---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTA
gi|24 : aACATTACCAAA---AT-TGG-TACTT-TTTG--------TTGT------------------A-GAATG--GAA--A--------G--GA----T-ATTG-CAAAA-A--GTGG-GA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--ATAA-A-G-AAGCGTATTG-TAC-T-GAA-AA
gi|25 : ACGGATAATTTGCTAC-GGTA-G--------CCGGGAAAT-A--TATCCTTTCTAAAGATTGAAA-TAACATTGATG-T--GTAATAACTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TA
gi|26 : ATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCG-AC-A-TG--AA-CAA-GAATG--AAA--A-TC--T-CG-TGA----T-ATTG-CTNAA-A--GAGGAGA-AA--AT----TCT---AT----ATCAGA-ATCAT--TAT--AT
gi|27 : TA-CCGGATGCAG-CAG-TTGATAAAA----GA-TGGA--AGCAGA------ATCAATTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTC-TTta
gi|28 : gaaatgaattggtactcttttcccataA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTCT--T-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAAACA-ATAA
gi|29 : tT-A-AAACATGGCCC-ACATTC-TCCAC-TT----------ATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|3 : ACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTT-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCATTT---------------TCGGAACGGACAATTTACTAC-TGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA---ATGGG-TAATATCTCAAGCATAACTT---ATGCAA-TAAGAATAAGCTTAT-GTACGACCTGTTAAA-TGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGATGTG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGTt
gi|30 : TCCAC-TT----------AT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|31 : ----------AT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|32 : CCAC-TT----------AT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|34 : GAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTATA-----------------------A-
gi|35 : TAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|4 : ATTACCAAT---AT-TGG-TAATT-TTTG--------TTGT-CC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAG-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAAATGGACGT-GGAAAAGG--GCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTC--T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CG-ATGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGA-GTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTT-CTAAAGATTAAAA-TGGCATTGAT-AT--GTAATA-TTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGCCATGATCTTTTGCTCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAA-----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGC-GCAAGTT-AAGTATTATGAAAGAAATTA--TTCGGTCAAAAAG-T--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGTA-TT-A-AAACATG--CCAACATTCTTCCAC-TT----------TT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|5 : TACCAAT---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAT--GGACGT-GGAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CGATTGGGT--T--A-CAAA-TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AAT-TTCGGAACGGACAATTTACTAC-GGTA----------CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCATTGAT-AT--GTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTT-TGCTCTTTCTGATT-AACTAGT---G-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCGGCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCTTCC
gi|6 : TTAC--AA---AT-TGG-TAAGT-TGCT--------TTGTTCC-ATCA-TG--AA-CAA-GAATG--GAA--ACTC--TTCG-TGA----TTATTG-CAAAA-AAAGTGG-GACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGATAA-G-G-AAGCGTAT-G-TAC-T-GAACAAT---AGT-TTC-AC-ACAGCCTG------------CGTCCTTGAG--CAG--GGACGT-GAAAAAGGAGGCTGT-CC-------TGC---AAGTAGA-----------------------ACTGCTACA-A--TAA---GA-CTAA--AC---CACTAA----AT--AT---TTCA-T-TTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-T-GG-T--T--A-CAA--TTT---GTTCAGT-----AT---CT-CTTAG--TCT----CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAAACACATGATAC-ATCATTTAAACGTTTTAAATCTTCGGAACGGACAACTTACTACAGGTAAG--------CCGG-AAAT-GACTCTTTTCTATAAAGATTGAAA-TGGCATTGATCAT--GTAATAATTTGCTTTCCATTTATTGCAGATTACTATTTCCC-TATTA-----------CATAG---AT-AAAATGCCATAGGATTTTATA---AGGGGGTACTATC-CATGCGTAA-TT---ATGCAA-TACGAATAATCTTAT-GTACGACCTGTTTAATTAAAAAA----ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTGC-AAA-TGGCTTGATCTTTT--GCT-CTTCTGACTAAACTA-T---G-CTTTA-CC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA--AACAGA------GCAACGTC-AAGGTTTAGA-GTGA------ACATTAACAGTATTC-TTGA-ACT-G-------GCAAGTTTAAG
gi|7 : --AT---TT---T-TTCCAAGATTTCTA---GG-T-TATA----A-GT-GAAAGAGATG-T-GG-T--T--A-CA---TCT---GTTCAGT-----ATCATCCATTTAG--TCT--T-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAAACA--TGATATAATCATTTAAACATTT--AATCTTCGGAACGAACAATTTACTAC-GGTA-GGCCGGTAGCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT-AT--GTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGTGTAACTTATCATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAG----CATATA-ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTGC-AAATTGGCACGATCTTTT-gtta
gi|8 : aattatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCATTAC--AA---AT-TGG-TAATT-GTT----------TGTTCC-AT----G--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA----GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--ATAA-A-GGAAGCGTAT-G-TAC-TTGAA-AATT-TAGT-TTC-AC-ACAGC-TG------------CGTC-TTGAG--CAG--GGACGTCGAAAAAGGAG-CTGT-CC-------TGC---AAGTAGA-----------------------A-TGCT-CA-A--TA----GA-C-AA--AC---CA-TAA-C-A-T--AT-----CA-TCTTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACTTTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT-AT--GTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAA-------------GAAT-AGAATGCCATGGGATTTTATA---AGGGG-T-ATATCTCATGCGTAAgctct
gi|9 : CCAAATTTGT-TGGATAAGT-TTTGATCTGGGATTGTGC--AT-A-TG--AAACAAAGAATG--GAACTA-TGAAT-CGATGGGATTT-ATTGGTAAAA-A--ATTC-GAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--ATAA-AAG-AAGCGCATTGGTACAT-GAATAATT-TAGT---C-AC-GCAGC-TC------------CGTC-TTCAG--AAG--GAAAGTTGAAAAGGGAGGCTGTTCT-------TGCCATAGGTAAT-----------------------A-TGTT-CAGA--TGTATTGA-CTAACAAC---TACTA--C-AATCTATG--TTCAGT-TTCCA----TTC-C---GT-TATA-A----A-GTTGAAAAC--TT-TTGG-T--TT-A-CA---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-AACA-ATGATA--AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT
Alignments
lowQualScore : 11111111 1111 111111111111 22222222222222222222222 11111 11 11111111 222 111 1 2222 111 111111 333333333333333 2222222 1111 22 1 111111 1111111111 111
lowQualScore : 555 3 3 3 22222222 3 66 333 44 3 3 44 44 3 44 3 3 7777 6 3 0000 3 6 3 555 3 3 6 44 333 3 3 6 3 6 3 3 3 3 3 888888888888 3 55 55 1 6 2 8888888 444 44444444444444444444444 2 0 2 33 8888 2 33 888 2 2 33 777 2 2 5555 88888 2 2 2 5555 2 2 1 11111 2 33 55 2 88 666 8888888888888 2 33 2 2 2 4 555 3 77 3 33 3 2 66 1 4 4 66666666 4 66 4 000 66 4 4 4 4 4 2 5 888 5 000 5 0 5 1 0 6666 77 4 5 5 111 5 4 2 777 4 4 8 4 3 0 7777 3 55 000000 3 3 777777777777777 3 1 3 3 3 7777777 1 2 5 5 66 888 5 5 5 0 0 3333 11 7777 3 44 7 3 3 999999 1 3 3 7 6 6 3333333333 3 3 444 44 3 6 99 3 111 3 3 3 6 8
lowQualScore : ... . . . ........ . .. ... .. . . .. .. . .. . . .... . . .... . . . ... . . . .. ... . . . . . . . . . . ............ . .. .. . . . ....... ... ....................... . . . .. .... . .. ... . . .. ... . . .... ..... . . . .... . . . ..... . .. .. . .. ... ............. . .. . . . . ... . .. . .. . . .. . . . ........ . .. . ... .. . . . . . . . ... . ... . . . . . .... .. . . . ... . . . ... . . . . . . .... . .. ...... . . ............... . . . . . ....... . . . . .. ... . . . . . .... .. .... . .. . . . ...... . . . . . . .......... . . ... .. . . .. . ... . . . . .
lowQualScore : 888 3 3 3 11111111 2 44 888 66 3 3 22 22 1 22 1 3 1111 7 3 7777 3 7 3 888 3 3 7 66 888 3 3 7 3 7 6 6 6 6 6 666666666666 6 00 00 0 7 7 7777777 777 77777777777777777777777 7 7 9 99 9999 9 99 999 9 9 77 333 7 7 7777 44444 7 7 7 7777 7 7 6 00000 5 44 99 5 44 999 7777777777777 4 22 4 4 4 7 444 1 33 1 55 1 1 99 4 4 4 11111111 4 11 4 000 11 4 4 4 4 2 4 0 888 0 000 7 7 7 4 7 0000 99 3 7 7 999 0 4 9 888 4 0 0 0 6 2 7777 6 00 555555 6 6 333333333333333 5 2 3 3 6 2222222 9 5 0 9 99 888 6 0 0 7 2 2222 88 1111 3 66 3 3 3 222222 4 4 6 3 4 7 5555555555 1 1 999 66 3 7 22 3 777 3 3 3 7 8
consensus : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( family-1257 ) : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|1 : ACATTACCAAA---TT-CGG-TA-------------------------T-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----TTATTG-CAAAA-A--GTGG-GA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--ATAA-A-G-AAGTGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TATTAACACAGCTTCGTT-TTGAG--AAG--GGACGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CT------------TGA-C---T--AT-----CA-T-TTCCA----TT------AT-T-TA-ACTATA-CT-GAAACA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAAACA-A----------------ACATTT--GATCTTTGGAATGGATAATTTACTAC-GGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ACGTAATAATTTGCTTTCCAG--AT-GCAG-TTACT-TTTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAAGGGA-TAATATCTCATGCATAACTA---TTACAA-TATGA-TAA--TTAT-GTACGACCTGTTTAA-TAAAACAACATATATAT----TTT--TAGCACGATATGGCTTCCGTATAAA-AATTGC-AAATTAGCATGATCTTTT-GCTC-TTTCTGATT-GGCTAATTATG-CTTTA-CCGGATGCAA-CAG-TTGATAAAA----GA-TGGA--AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTAACATTCAAAGT-CTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA---ATAT--GCATGCTGCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGT
gi|10 : aaACTACA---ATGTGG-TAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAA--A-CT--T-CG-TGA----T-GTTG-CAAAATA--GTGG-GA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--ATAATA-G-AAACAC-CTG-TACTT-GAA-AATTGTAGTATCC-AC-ACAGC--G------------CGTC-TTGAGGAAAG--GGAAG-----------GTCTGT-C--------TGC---AAGTAGATTTTAGTTCTATCTTTGCAATAGA-TTTTACA-A--TG----GA-CTTA--ACACGCACTAA-C-AAT--ATGCATTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG----C--A-CAAT-TTT---GTTCAGT------TA--C----TA----CT--T-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--T----A-AT-ATAC-ATCATT
gi|11 : AA-TTGATAAAA----GAGCGAT--AGCAGA------AGCAAGTCCAA-ATTTAGATGTGC------ATATT--AACT-TTC-TTGA-ACTGG--------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAAG---ACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC---AAAT-GCCA----GCCACAA-CACC-ATGATGAA-ATTACTGAAATTG-AA-GTGTACGA------TGTTAACTA-TT-A-AACCATGATCCGACTTTCTTCCAC-TT----------AT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTA
gi|12 : tATTACCAAA---TT-AGG-TAATTGTTTG--------TTGGTGC-AT-A-TG--AA-CAA-GAGTG--GAA--A-TC--T-Ct
gi|12 : a-G-AAGCACATTG-TAC-T-GAA-AATT-TAGT-TGC-AC-ACAGC-TG------------CACG-TTGAG--AAG--GGAAGT-GAAAAGAGAGGCTGT-TT-------TGC---AAGTAAA-----------------------A-TGTTACA-A--TA----TA-CTAA--AC---CACTAA-C-AAT--AT---ATCA-T-TTCCG----TTC-A---GT-T-TA-A----A-GT-GAAACA--T--TTGG-C--T--A-CAA--TTT---------------------------A-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAAACA-ATGagtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|13 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctATG--GAA--A-TC--T-CG-TGA----T-GTTG-CAAAA-A--GTGG-TA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGATACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAT--TTT---GTACAGT-----ATG--CC-TTTAA-CTCT--T-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAAACA-A
gi|14 : CT-TTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAA-AGA------GTCAAGTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTCCTTGAGACTGA-------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAGT---ACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTATGCA----TCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--GC
gi|15 : ACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTA
gi|16 : taACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|17 : taAGTCTAT-CT-------GGC---AAGTAGA-------------------------T-TTACA-A--TG----GA-CTAA--AA---CACTAA-C-AAT--AT---TTCA-T-TTCCA-----TC-AGGTGT-T-AA-A----A-GT-GAAACA--T--TTTG-T--C--ACCAACTTTT---GGTCA---------------TT--G-CTCT--T-CGT-CA-GTG---AAGAAGTAAAGATt
gi|18 : AAGTAGATTGT-CTAGTCATTTGC---AA-TAGG-----------------------A-TTTTACG-ACATG----GA-CTAA--ACAC-CACTAA-CCAAG--AT---TTCA-T-T-CCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG-TCGC--A-CAA--TTTG--GTTCAG---------------TTAG-CTCT--TACGT-CA-GTGCGAAGGAAGTAAAGATgttttggtaataattaacaagttgtccacatttgg
gi|19 : TTC-GATA-AACGAGT---GGCTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|19 : tgctcgTTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|2 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA----TC--T-CA-TGA----T-ATTG-CAAAA-AA-GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA---G-AAGCGCATTT-TAC-T-GAA-AATT--ATT-TCCCACCACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GAACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----AAGT-GAAAAA--TG-TTGG-T--TTTA-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCA--------------ATTTTCGGAACGGACAATTTACTAC-TG-A-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA-----GGG-TAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAATGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCTT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAATTTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGAT-TG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA---ATAT--GCA----GCAGCAAACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATGac
gi|20 : -TTTCTGATA-AACTAGT---G-CTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|20 : TTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|21 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatCTAT-CT-------GGC---AAGTAGA-----------------------T-TGTTACA-A--TG----GA-CTGA--AC----ACTAAAC-AAT--AT---TTCA-T-TTCCA----TTC-AAG-GTGT-TA-A----A-GT-GAAACC--T--TTTG-T--C--A-CAA--CTTTTGGTTCA-T-----GTG--C----------CT--T-CGT-CA-GTGC-AAGGAAGTAAAGAac
gi|22 : tTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCAC-TTGTGACCACTTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTA
gi|23 : AAATT-TTA-ATGT-AATGA-------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGGT---ACATACAGCTTGAAAT-AA-ATTC------------A---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTA
gi|24 : aACATTACCAAA---AT-TGG-TACTT-TTTG--------TTGT------------------A-GAATG--GAA--A--------G--GA----T-ATTG-CAAAA-A--GTGG-GA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--ATAA-A-G-AAGCGTATTG-TAC-T-GAA-AA
gi|25 : ACGGATAATTTGCTAC-GGTA-G--------CCGGGAAAT-A--TATCCTTTCTAAAGATTGAAA-TAACATTGAT---GTGTAATAACTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TA
gi|26 : ATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCG-AC-A-TG--AA-CAA-GAATG--AAA--A-TC--T-CG-TGA----T-ATTG-CTNAA-A--GAGGAGA-AA--AT----TCT---AT----ATCAGA-ATCAT--TAT--AT
gi|27 : TA-CCGGATGCAG-CAG-TTGATAAAA----GA-TGGA--AGCAGA------ATCAATTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTC-TTta
gi|28 : gaaatgaattggtactcttttcccataA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTCT--T-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAAACA-ATAA
gi|29 : tT-A-AAACATGGCCC-ACATTC-TCCAC-TT----------ATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|3 : ACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTT-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCATTT---------------TCGGAACGGACAATTTACTAC-TGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA---ATGGG-TAATATCTCAAGCATAACTT---ATGCAA-TAAGAATAAGCTTAT-GTACGACCTGTTAAA-TGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGATGTG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGTt
gi|30 : TCCAC-TT----------AT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|31 : ----------AT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|32 : CCAC-TT----------AT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|34 : GAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTATA-----------------------A-
gi|35 : TAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|4 : ATTACCAAT---AT-TGG-TAATT-TTTG--------TTGT-CC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAG-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAAATGGACGT-GGAAAAGG--GCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTC--T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CG-ATGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGA-GTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTT-CTAAAGATTAAAA-TGGCATTGAT---ATGTAATA-TTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGCCATGATCTTTTGCTCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAA-----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGC-GCAAGTT-AAGTATTATGAAAGAAATTA--TTCGGTCAAAAAG-T--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGTA-TT-A-AAACATG--CCAACATTCTTCCAC-TT----------TT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|5 : TACCAAT---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAT--GGACGT-GGAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CGATTGGGT--T--A-CAAA-TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AAT-TTCGGAACGGACAATTTACTAC-GGTA----------CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTT-TGCTCTTTCTGATT-AACTAGT---G-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCGGCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCTTCC
gi|6 : TTAC--AA---AT-TGG-TAAGT-TGCT--------TTGTTCC-ATCA-TG--AA-CAA-GAATG--GAA--ACTC--TTCG-TGA----TTATTG-CAAAA-AAAGTGG-GACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGATAA-G-G-AAGCGTAT-G-TAC-T-GAACAAT---AGT-TTC-AC-ACAGCCTG------------CGTCCTTGAG--CAG--GGACGT-GAAAAAGGAGGCTGT-CC-------TGC---AAGTAGA-----------------------ACTGCTACA-A--TAA---GA-CTAA--AC---CACTAA----AT--AT---TTCA-T-TTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-T-GG-T--T--A-CAA--TTT---GTTCAGT-----AT---CT-CTTAG--TCT----CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAAACACATGATAC-ATCATTTAAACGTTTTAAATCTTCGGAACGGACAACTTACTACAGGTAAG--------CCGG-AAAT-GACTCTTTTCTATAAAGATTGAAA-TGGCATTGATC--ATGTAATAATTTGCTTTCCATTTATTGCAGATTACTATTTCCC-TATTA-----------CATAG---AT-AAAATGCCATAGGATTTTATA---AGGGGGTACTATC-CATGCGTAA-TT---ATGCAA-TACGAATAATCTTAT-GTACGACCTGTTTAATTAAAAAA----ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTGC-AAA-TGGCTTGATCTTTT--GCT-CTTCTGACTAAACTA-T---G-CTTTA-CC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA--AACAGA------GCAACGTC-AAGGTTTAGA-GTGA------ACATTAACAGTATTC-TTGA-ACT-G-------GCAAGTTTAAG
gi|7 : --AT---TT---T-TTCCAAGATTTCTA---GG-T-TATA----A-GT-GAAAGAGATG-T-GG-T--T--A-CA---TCT---GTTCAGT-----ATCATCCATTTAG--TCT--T-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAAACA--TGATATAATCATTTAAACATTT--AATCTTCGGAACGAACAATTTACTAC-GGTA-GGCCGGTAGCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGTGTAACTTATCATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAG----CATATA-ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTGC-AAATTGGCACGATCTTTT-gtta
gi|8 : aattatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCATTAC--AA---AT-TGG-TAATT-GTT----------TGTTCC-AT----G--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA----GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--ATAA-A-GGAAGCGTAT-G-TAC-TTGAA-AATT-TAGT-TTC-AC-ACAGC-TG------------CGTC-TTGAG--CAG--GGACGTCGAAAAAGGAG-CTGT-CC-------TGC---AAGTAGA-----------------------A-TGCT-CA-A--TA----GA-C-AA--AC---CA-TAA-C-A-T--AT-----CA-TCTTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACTTTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAA-------------GAAT-AGAATGCCATGGGATTTTATA---AGGGG-T-ATATCTCATGCGTAAgctct
gi|9 : CCAAATTTGT-TGGATAAGT-TTTGATCTGGGATTGTGC--AT-A-TG--AAACAAAGAATG--GAACTA-TGAAT-CGATGGGATTT-ATTGGTAAAA-A--ATTC-GAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--ATAA-AAG-AAGCGCATTGGTACAT-GAATAATT-TAGT---C-AC-GCAGC-TC------------CGTC-TTCAG--AAG--GAAAGTTGAAAAGGGAGGCTGTTCT-------TGCCATAGGTAAT-----------------------A-TGTT-CAGA--TGTATTGA-CTAACAAC---TACTA--C-AATCTATG--TTCAGT-TTCCA----TTC-C---GT-TATA-A----A-GTTGAAAAC--TT-TTGG-T--TT-A-CA---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-AACA-ATGATA--AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT
Alignments
lowQualScore : 11111111 1111 111111111111 22222222222222222222222 11111 11 11111111 222 111 1 2222 111 111111 333333333333333 2222222 1111 22 1 111111 1111111111 111
lowQualScore : 555 3 3 3 22222222 3 66 333 44 3 3 44 44 3 44 3 3 7777 6 3 0000 3 6 3 555 3 3 6 44 333 3 3 6 3 6 3 3 3 3 3 888888888888 3 55 55 1 6 2 8888888 444 44444444444444444444444 2 0 2 33 8888 2 33 888 2 2 33 777 2 2 5555 88888 2 2 2 5555 2 2 1 11111 2 33 55 2 88 666 8888888888888 2 33 2 2 2 4 555 3 77 3 33 3 2 66 1 4 4 66666666 4 66 4 000 66 4 4 4 4 4 2 5 888 5 000 5 0 5 1 0 6666 77 4 5 5 111 5 4 2 777 4 4 8 4 3 0 7777 3 55 000000 3 3 777777777777777 3 1 3 3 3 7777777 1 2 5 5 66 888 5 5 5 0 0 3333 11 7777 3 44 7 3 3 999999 1 3 3 7 6 6 3333333333 3 3 444 44 3 6 99 3 111 3 3 3 6 8
lowQualScore : ... . . . ........ . .. ... .. . . .. .. . .. . . .... . . .... . . . ... . . . .. ... . . . . . . . . . . ............ . .. .. . . . ....... ... ....................... . . . .. .... . .. ... . . .. ... . . .... ..... . . . .... . . . ..... . .. .. . .. ... ............. . .. . . . . ... . .. . .. . . .. . . . ........ . .. . ... .. . . . . . . . ... . ... . . . . . .... .. . . . ... . . . ... . . . . . . .... . .. ...... . . ............... . . . . . ....... . . . . .. ... . . . . . .... .. .... . .. . . . ...... . . . . . . .......... . . ... .. . . .. . ... . . . . .
lowQualScore : 888 3 3 3 11111111 2 44 888 66 3 3 22 22 1 22 1 3 1111 7 3 7777 3 7 3 888 3 3 7 66 888 3 3 7 3 7 6 6 6 6 6 666666666666 6 00 00 0 7 7 7777777 777 77777777777777777777777 7 7 9 99 9999 9 99 999 9 9 77 333 7 7 7777 44444 7 7 7 7777 7 7 6 00000 5 44 99 5 44 999 7777777777777 4 22 4 4 4 7 444 1 33 1 55 1 1 99 4 4 4 11111111 4 11 4 000 11 4 4 4 4 2 4 0 888 0 000 7 7 7 4 7 0000 99 3 7 7 999 0 4 9 888 4 0 0 0 6 2 7777 6 00 555555 6 6 333333333333333 5 2 3 3 6 2222222 9 5 0 9 99 888 6 0 0 7 2 2222 88 1111 3 66 3 3 3 222222 4 4 6 3 4 7 5555555555 1 1 999 66 3 7 22 3 777 3 3 3 7 8
consensus : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( family-1257 ) : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|1 : ACATTACCAAA---TT-CGG-TA-------------------------T-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----TTATTG-CAAAA-A--GTGG-GA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--ATAA-A-G-AAGTGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TATTAACACAGCTTCGTT-TTGAG--AAG--GGACGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CT------------TGA-C---T--AT-----CA-T-TTCCA----TT------AT-T-TA-ACTATA-CT-GAAACA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAAACA-A----------------ACATTT--GATCTTTGGAATGGATAATTTACTAC-GGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ACGTAATAATTTGCTTTCCAG--AT-GCAG-TTACT-TTTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAAGGGA-TAATATCTCATGCATAACTA---TTACAA-TATGA-TAA--TTAT-GTACGACCTGTTTAA-TAAAACAACATATATAT----TTT--TAGCACGATATGGCTTCCGTATAAA-AATTGC-AAATTAGCATGATCTTTT-GCTC-TTTCTGATT-GGCTAATTATG-CTTTA-CCGGATGCAA-CAG-TTGATAAAA----GA-TGGA--AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTAACATTCAAAGT-CTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA---ATAT--GCATGCTGCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGT
gi|10 : aaACTACA---ATGTGG-TAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAA--A-CT--T-CG-TGA----T-GTTG-CAAAATA--GTGG-GA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--ATAATA-G-AAACAC-CTG-TACTT-GAA-AATTGTAGTATCC-AC-ACAGC--G------------CGTC-TTGAGGAAAG--GGAAG-----------GTCTGT-C--------TGC---AAGTAGATTTTAGTTCTATCTTTGCAATAGA-TTTTACA-A--TG----GA-CTTA--ACACGCACTAA-C-AAT--ATGCATTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG----C--A-CAAT-TTT---GTTCAGT------TA--C----TA----CT--T-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--T----A-AT-ATAC-ATCATT
gi|11 : AA-TTGATAAAA----GAGCGAT--AGCAGA------AGCAAGTCCAA-ATTTAGATGTGC------ATATT--AACT-TTC-TTGA-ACTGG--------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAAG---ACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC---AAAT-GCCA----GCCACAA-CACC-ATGATGAA-ATTACTGAAATTG-AA-GTGTACGA------TGTTAACTA-TT-A-AACCATGATCCGACTTTCTTCCAC-TT----------AT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTA
gi|12 : tATTACCAAA---TT-AGG-TAATTGTTTG--------TTGGTGC-AT-A-TG--AA-CAA-GAGTG--GAA--A-TC--T-Ct
gi|12 : a-G-AAGCACATTG-TAC-T-GAA-AATT-TAGT-TGC-AC-ACAGC-TG------------CACG-TTGAG--AAG--GGAAGT-GAAAAGAGAGGCTGT-TT-------TGC---AAGTAAA-----------------------A-TGTTACA-A--TA----TA-CTAA--AC---CACTAA-C-AAT--AT---ATCA-T-TTCCG----TTC-A---GT-T-TA-A----A-GT-GAAACA--T--TTGG-C--T--A-CAA--TTT---------------------------A-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAAACA-ATGagtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|13 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctATG--GAA--A-TC--T-CG-TGA----T-GTTG-CAAAA-A--GTGG-TA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGATACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAT--TTT---GTACAGT-----ATG--CC-TTTAA-CTCT--T-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAAACA-A
gi|14 : CT-TTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAA-AGA------GTCAAGTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTCCTTGAGACTGA-------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAGT---ACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTATGCA----TCAGCGAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--GC
gi|15 : ACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTA
gi|16 : taACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|17 : taAGTCTAT-CT-------GGC---AAGTAGA-------------------------T-TTACA-A--TG----GA-CTAA--AA---CACTAA-C-AAT--AT---TTCA-T-TTCCA-----TC-AGGTGT-T-AA-A----A-GT-GAAACA--T--TTTG-T--C--ACCAACTTTT---GGTCA---------------TT--G-CTCT--T-CGT-CA-GTG---AAGAAGTAAAGATt
gi|18 : AAGTAGATTGT-CTAGTCATTTGC---AA-TAGG-----------------------A-TTTTACG-ACATG----GA-CTAA--ACAC-CACTAA-CCAAG--AT---TTCA-T-T-CCA----TTC-A---GT-T-TA-A----A-GT-GAAACA--TT-TTGG-TCGC--A-CAA--TTTG--GTTCAG---------------TTAG-CTCT--TACGT-CA-GTGCGAAGGAAGTAAAGATgttttggtaataattaacaagttgtccacatttgg
gi|19 : TTC-GATA-AACGAGT---GGCTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|19 : tgctcgTTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|2 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA----TC--T-CA-TGA----T-ATTG-CAAAA-AA-GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA---G-AAGCGCATTT-TAC-T-GAA-AATT--ATT-TCCCACCACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GAACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----AAGT-GAAAAA--TG-TTGG-T--TTTA-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCA--------------ATTTTCGGAACGGACAATTTACTAC-TG-A-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA-----GGG-TAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAATGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCTT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAATTTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGAT-TG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA---ATAT--GCA----GCAGCAAACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATGac
gi|20 : -TTTCTGATA-AACTAGT---G-CTTTA-C--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|20 : TTAACTTTCTTAA----TAT-CGCA----GCAGCAAACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|21 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatCTAT-CT-------GGC---AAGTAGA-----------------------T-TGTTACA-A--TG----GA-CTGA--AC----ACTAAAC-AAT--AT---TTCA-T-TTCCA----TTC-AAG-GTGT-TA-A----A-GT-GAAACC--T--TTTG-T--C--A-CAA--CTTTTGGTTCA-T-----GTG--C----------CT--T-CGT-CA-GTGC-AAGGAAGTAAAGAac
gi|22 : tTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCAC-TTGTGACCACTTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTA
gi|23 : AAATT-TTA-ATGT-AATGA-------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGGT---ACATACAGCTTGAAAT-AA-ATTC------------A---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTA
gi|24 : aACATTACCAAA---AT-TGG-TACTT-TTTG--------TTGT------------------A-GAATG--GAA--A--------G--GA----T-ATTG-CAAAA-A--GTGG-GA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--ATAA-A-G-AAGCGTATTG-TAC-T-GAA-AA
gi|25 : ACGGATAATTTGCTAC-GGTA-G--------CCGGGAAAT-A--TATCCTTTCTAAAGATTGAAA-TAACATTGAT---GTGTAATAACTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TA
gi|26 : ATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCG-AC-A-TG--AA-CAA-GAATG--AAA--A-TC--T-CG-TGA----T-ATTG-CTNAA-A--GAGGAGA-AA--AT----TCT---AT----ATCAGA-ATCAT--TAT--AT
gi|27 : TA-CCGGATGCAG-CAG-TTGATAAAA----GA-TGGA--AGCAGA------ATCAATTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTC-TTta
gi|28 : gaaatgaattggtactcttttcccataA--TT-TTGG-T--T--A-CAA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTCT--T-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAAACA-ATAA
gi|29 : tT-A-AAACATGGCCC-ACATTC-TCCAC-TT----------ATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|3 : ACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTT-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCATTT---------------TCGGAACGGACAATTTACTAC-TGTA-G--------CCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA---ATGGG-TAATATCTCAAGCATAACTT---ATGCAA-TAAGAATAAGCTTAT-GTACGACCTGTTAAA-TGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGATGTG-------ACATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGTt
gi|30 : TCCAC-TT----------AT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|31 : ----------AT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|32 : CCAC-TT----------AT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|34 : GAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTATA-----------------------A-
gi|35 : TAG-CTCT--T-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|4 : ATTACCAAT---AT-TGG-TAATT-TTTG--------TTGT-CC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAG-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAAATGGACGT-GGAAAAGG--GCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTC--T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CG-ATGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGA-GTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTT-CTAAAGATTAAAA-TGGCATTGAT---ATGTAATA-TTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGCCATGATCTTTTGCTCT-TTTCTGATT-AACTAGT---G-CTTTA-CCAGATGCAA-CAA-TTGATAAA-----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGC-GCAAGTT-AAGTATTATGAAAGAAATTA--TTCGGTCAAAAAG-T--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGTA-TT-A-AAACATG--CCAACATTCTTCCAC-TT----------TT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|5 : TACCAAT---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-TCC-AC-ACAGC-TG------------CGTC-TTGAC--AAT--GGACGT-GGAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----GA-CTAA--AC---CACTAC-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAAA-CGATTGGGT--T--A-CAAA-TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AAT-TTCGGAACGGACAATTTACTAC-GGTA----------CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATATATAT-----TT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTT-TGCTCTTTCTGATT-AACTAGT---G-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCGGCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCTTCC
gi|6 : TTAC--AA---AT-TGG-TAAGT-TGCT--------TTGTTCC-ATCA-TG--AA-CAA-GAATG--GAA--ACTC--TTCG-TGA----TTATTG-CAAAA-AAAGTGG-GACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGATAA-G-G-AAGCGTAT-G-TAC-T-GAACAAT---AGT-TTC-AC-ACAGCCTG------------CGTCCTTGAG--CAG--GGACGT-GAAAAAGGAGGCTGT-CC-------TGC---AAGTAGA-----------------------ACTGCTACA-A--TAA---GA-CTAA--AC---CACTAA----AT--AT---TTCA-T-TTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-T-GG-T--T--A-CAA--TTT---GTTCAGT-----AT---CT-CTTAG--TCT----CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAAACACATGATAC-ATCATTTAAACGTTTTAAATCTTCGGAACGGACAACTTACTACAGGTAAG--------CCGG-AAAT-GACTCTTTTCTATAAAGATTGAAA-TGGCATTGATC--ATGTAATAATTTGCTTTCCATTTATTGCAGATTACTATTTCCC-TATTA-----------CATAG---AT-AAAATGCCATAGGATTTTATA---AGGGGGTACTATC-CATGCGTAA-TT---ATGCAA-TACGAATAATCTTAT-GTACGACCTGTTTAATTAAAAAA----ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTGC-AAA-TGGCTTGATCTTTT--GCT-CTTCTGACTAAACTA-T---G-CTTTA-CC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA--AACAGA------GCAACGTC-AAGGTTTAGA-GTGA------ACATTAACAGTATTC-TTGA-ACT-G-------GCAAGTTTAAG
gi|7 : --AT---TT---T-TTCCAAGATTTCTA---GG-T-TATA----A-GT-GAAAGAGATG-T-GG-T--T--A-CA---TCT---GTTCAGT-----ATCATCCATTTAG--TCT--T-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAAACA--TGATATAATCATTTAAACATTT--AATCTTCGGAACGAACAATTTACTAC-GGTA-GGCCGGTAGCCAGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGTGTAACTTATCATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAG----CATATA-ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTGC-AAATTGGCACGATCTTTT-gtta
gi|8 : aattatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCATTAC--AA---AT-TGG-TAATT-GTT----------TGTTCC-AT----G--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA----GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--ATAA-A-GGAAGCGTAT-G-TAC-TTGAA-AATT-TAGT-TTC-AC-ACAGC-TG------------CGTC-TTGAG--CAG--GGACGTCGAAAAAGGAG-CTGT-CC-------TGC---AAGTAGA-----------------------A-TGCT-CA-A--TA----GA-C-AA--AC---CA-TAA-C-A-T--AT-----CA-TCTTCCA----TT------AT-T-TT-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACTTTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAA-------------GAAT-AGAATGCCATGGGATTTTATA---AGGGG-T-ATATCTCATGCGTAAgctct
gi|9 : CCAAATTTGT-TGGATAAGT-TTTGATCTGGGATTGTGC--AT-A-TG--AAACAAAGAATG--GAACTA-TGAAT-CGATGGGATTT-ATTGGTAAAA-A--ATTC-GAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--ATAA-AAG-AAGCGCATTGGTACAT-GAATAATT-TAGT---C-AC-GCAGC-TC------------CGTC-TTCAG--AAG--GAAAGTTGAAAAGGGAGGCTGTTCT-------TGCCATAGGTAAT-----------------------A-TGTT-CAGA--TGTATTGA-CTAACAAC---TACTA--C-AATCTATG--TTCAGT-TTCCA----TTC-C---GT-TATA-A----A-GTTGAAAAC--TT-TTGG-T--TT-A-CA---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-AACA-ATGATA--AT
blockSeqs : TTT G A G ATCTGGGA T CA AT AT A A GA CT C AA T A GATT T G AAA A C G GCT C A A TG TA G G T T C G A C C C . C GA AT A C T AGTCATT CAT TTTTAGTTCTATCTTTGCAATAG C G CA TATT A CA ACG A C CT GCA G C AGAT AGGT G A T . A T C ACGA G CG TT C CT TTG GCATCATGCC A GT A T T G TGA T CA C TA A A TA T A A GCCGGTAG T AC C GAT TT T A A . A T G . G ATC A T A ATAT TC T T C GCT C A G . G A A G T TTAG G TC . C G TAGATGTGC T A A C G CCGCGCG T G T G TC . G T C TACA AT . A AT T A G TACATG G A A T G T GTGACCACTT G A TTA AG G T GT C AAC A G T C A
blockSeqs : . . . . . T C CA . . . . . . . . . . . . TA . G . . . . T . AA . . A . T . . . . . . . . . A T . . . . . . . A . . AC . . . G . . . AAG . . . . . . C GATG . . T . T G ATCATCCA . . . . . G . . T . C A A . C . . . . . . GAT . . . . . A T . . . . . . T ATAT . T . . CC . . G . . . A . . . . . . . . TAGATGTA A A . . . CCGCGC T G . T . . G . . A G . . . T A . TACATG G A . T G T . . . A . . T GT . AAC . . . C A
blockSeqs : . . . . . T T A . . . . . . . . . . . . AA . . . . . . . . A . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . TA . . . . . . A ACG . . . . A . ATGCCT . . . . . . . . . . C A G . C . . . . . . C . . . . . G A . . . . . . . AAT . G . . CC . . G . . . G . . . . . . . . TAGATGTA G A . . . . T G . C . . G . . A C . . . T A . . A A . . A . . . . G . . . . . . . . . . A
blockSeqs : . . . . . T G A . . . . . . . . . . . . A . . . . . . . . A . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . C TT . . . . . . ATGCC . . . . . . . . . . . A A . C . . . . . . . . . . . . G A . . . . . . . AAT . G . . TG . . G . . . A . . . . . . . . TCGATGTG C A . . . . T G . T . . G . . A C . . . T A . . A A . . A . . . . C . . . . . . . . . . A
blockSeqs : . . . . . T T A . . . . . . . . . . . . A . . . . . . . . A . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . C TG . . . . . . ATGCC . . . . . . . . . . . A T . C . . . . . . . . . . . . A G . . . . . . . . . G . . G . . G . . . A . . . . . . . . TAGAGTGA G A . . . . T T . G . . G . . A C . . . T . . . G T . . T . . . . C . . . . . . . . . . A
blockSeqs : . . . . . T C A . . . . . . . . . . . . A . . . . . . . . A . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . A TT . . . . . . ATGCC . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . G . . . A . . . . . . . . TCGATTG A A . . . . T T . T . . . . . A C . . . T . . . A A . . A . . . . A . . . . . . . . . . A
blockSeqs : . . . . . T C A . . . . . . . . . . . . A . . . . . . . . A . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . A . . . . . . C TG . . . . . . ATGCC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C A . . . . . . . . . . . . . A . . . . T . . . G A . . T . . . . A . . . . . . . . . . A
blockSeqs : . . . . . T C A . . . . . . . . . . . . T . . . . . . . . G . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . A . . . . . . A TT . . . . . . ATGCT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C A . . . . . . . . . . . . . . A . . . A . . . . A . . . . . . . . . . .
blockSeqs : . . . . . G C A . . . . . . . . . . . . T . . . . . . . . A . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . A . . . . . . A TG . . . . . . ATACC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . A . . . . . . A TG . . . . . . GTGC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . A TG . . . . . . ATCT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . G TT . . . . . . TAC . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A T . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : C* ************ A**** **** *** *** ****** TGATGTG******** *** ** ****
originalCons : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTAGATGTG-------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT-CGCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
finalCons : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-CAAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-TCC-AC-ACAGC-TG------------CGTC-TTGAG--AAG--GGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GA-CTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTCA----GT-T-TA-A----A-GT-GAAAAA--TG-TTGG-T--T--A-CAA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTCT--T-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAAT-G--TCTTCTTTCTAAAGATTGAAA-TGGCATTGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGCAA-TACGAATAAGCTTAT-GTACGACCTGTTTAA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTGC-AAATTGGCATGATCTTTT-CCCT-TTTCTGATT-AACTAGT---G-CTTTA-CCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTTGATGTG--------ANATTTAAAGT-TTC-TTGA-ACTGG-------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA---ATAT--GCA----GCAGCAAACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT
Alignments
lowQualScore : 11111111 111111111111 22222222222222222222222 11 11111111 111 111 22222 11 111111 555555555555555 22222222222222 111111 1 1 111111 1111111111 111
lowQualScore : 555 3 3 3 22222222 3 66 333 44 3 3 44 44 3 44 3 3 7777 6 3 3 7777 3 6 3 555 3 3 6 44 3 3 3 3 6 3 6 3 3 3 3 3 888888888888 3 55 55 1 6 2 8888888 444 44444444444444444444444 2 0 2 33 8888 2 33 888 2 2 33 777 2 2 5555 88888 2 2 2 2 5555 2 5 1 33 99 2 33 33 2 2 2 55 666 8888888888888 2 33 2 2 2 4 555 3 77 3 33 3 2 66 1 4 4 66666666 4 66 4 777 222 66 4 4 4 4 4 2 5 888 5 000 5 0 5 5 5 0 33333 77 4 5 5 5 22 4 2 777 4 4 8 4 3 0 7777 3 55 000000 3 3 555555555555555 3 1 3 3 3 00000000000000 2 5 5 66 888 5 5 5 0 0 666666 3 7777 3 3 3 44 7 3 3 999999 1 6 3 7 6 6 3333333333 3 3 444 44 3 6 99 3 111 3 3 3 6 8
lowQualScore : ... . . . ........ . .. ... .. . . .. .. . .. . . .... . . . .... . . . ... . . . .. . . . . . . . . . . . . ............ . .. .. . . . ....... ... ....................... . . . .. .... . .. ... . . .. ... . . .... ..... . . . . .... . . . .. .. . .. .. . . . .. ... ............. . .. . . . . ... . .. . .. . . .. . . . ........ . .. . ... ... .. . . . . . . . ... . ... . . . . . . ..... .. . . . . .. . . ... . . . . . . .... . .. ...... . . ............... . . . . . .............. . . . .. ... . . . . . ...... . .... . . . .. . . . ...... . . . . . . .......... . . ... .. . . .. . ... . . . . .
lowQualScore : 888 3 3 3 11111111 2 44 888 66 3 3 22 22 1 22 1 3 1111 7 3 3 3333 3 7 3 888 3 3 7 66 6 3 3 3 7 3 7 6 6 6 6 6 666666666666 6 00 00 0 7 7 7777777 777 77777777777777777777777 7 7 9 99 9999 9 99 999 9 9 77 333 7 7 7777 44444 7 7 7 7 7777 7 3 6 44 77 5 44 44 5 5 5 99 999 7777777777777 4 22 4 4 4 7 444 1 33 1 55 1 1 99 4 4 4 11111111 4 11 4 888 222 11 4 4 4 4 2 4 0 888 0 000 7 7 7 7 7 7 99999 99 3 7 7 7 44 4 9 888 4 0 0 0 6 2 7777 6 00 555555 6 6 777777777777777 5 2 3 3 6 88888888888888 5 0 9 99 888 6 0 0 7 2 999999 3 1111 3 3 3 66 3 3 3 222222 4 0 6 3 4 7 5555555555 1 1 999 66 3 7 22 3 777 3 3 3 7 8
consensus : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-C-AAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-T-CCA-CACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----G-ACTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-T-A-A----AGT-G-AAAAA--TG-TT-GG--T--T-A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTG-CAAATTGGCATGAT-CTTTT-CCCTTTTCTGATT-AACTAGT---G-CTTT-ACCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTT-GATGTG-------ANATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA-----ATAT-GCA----GCAG-CA-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
Reference ( family-1257 ) : ACATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-C-AAAA-A--GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-T-CCA-CACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----G-ACTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-T-A-A----AGT-G-AAAAA--TG-TT-GG--T--T-A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGTAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATACATATA-ATTTT--TAGCACGATATAGCTTCCGTACAAA-CATTG-CAAATTGGCATGAT-CTTTT-CCCTTTTCTGATT-AACTAGT---G-CTTT-ACCGGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------GCCAAGTC-AA-GTTT-GATGTG-------ANATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCGNTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA-----ATAT-GCA----GCAG-CA-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCAAGGGGAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTAAATGT
gi|1 : ACATTACCAAA---TT-CGG-TA-------------------------T-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----TTATTG-C-AAAA-A--GTGG-GA-GTTCATTT-GTTT---CTGGC-ATGAAT-TTCCT-CTAT--ATAA-A-G-AAGTGCATTG-TAC-T-GAA-AATT-TAGT-T-CCA-CACAGC-TATTAACACAGCTTCGTT-TTG--AG--AAGGGACGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----G-ACT------------TGA-C---T--AT-----CA-T-TTCCA----TT------AT-T-T-A-ACTATACT-G-AAACA--TT-TT-GG--T--T-A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-TGT-CA-GTGC-AAGGAAGTAAAGCTCACG---T-GCTACAA--TAAACA-A----------------ACATTT--GATCTTTGGAATGGATAATTTACTAC-GGTA-G--------CCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGAT---ACGTAATAATTTGCTTTCCAG--AT-GCAG-TTACT-TTTCCCCTATTATCAAGAAAACACATAAGGAAT-AGAATGCCTTTGGATTTTATATTAAGGGA-TAATATCTCATGCATAACTA---TTAC-AATATGA-TAA--TTA-TGTACGACCTGTTT-AA-TAAAACAACATATATAT----TTT--TAGCACGATATGGCTTCCGTATAAA-AATTG-CAAATTAGCATGAT-CTTTT-GCTCTTTCTGATT-GGCTAATTATG-CTTT-ACCGGATGCAA-CAG-TTGATAAAA----GA-TGGA--AGTAGACTAAGAGTCAAGTC-AA-GTTTAGATGTATAACGTAACATTCAAAGT-CTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAAATC-CTTCGGTAAAAAAGGT--GTCAGTTATACAGACATTCTGGAAT-AC-ATACTTCATTTTCTTAA-----ATAT-GCATGCTGCAG-CG-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-CCACATGGCCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--ACCATTAA--GA-TGCACGGGTAA-ACTG--CAGACAAT-T---TGC-C-G-AA-TTTGGT-AATGT
gi|10 : aaACTACA---ATGTGG-TAATA-TTTG--------TTGTTCCAAT-ATTGATAA-CAG-AAATGGAGAA--A-CT--T-CG-TGA----T-GTTG-C-AAAATA--GTGG-GA-GATCATTTGGTTT---ATGGC-ATGAATATTCCTAGTAT--ATAATA-G-AAACAC-CTG-TACTT-GAA-AATTGTAGTAT-CCA-CACAGC--G------------CGTC-TTG--AGGAAAGGGAAG-----------GTCTGT-C--------TGC---AAGTAGATTTTAGTTCTATCTTTGCAATAGA-TTTTACA-A--TG----G-ACTTA--ACACGCACTAA-C-AAT--ATGCATTCA-T-TTCCA----TTC-A---GT-T-T-A-A----AGT-G-AAACA--TT-TT-GG-----C-A-C-AAT-TTT---GTTCAGT------TA--C----TA----C--TT-CGT-CA-GTGCGAAGGAAGTAAAGAT--TG---T-TTTGTAA--T----A-AT-ATAC-ATCATT
gi|11 : AA-TTGATAAAA----GAGCGAT--AGCAGA------AGCAAGTCCAA-ATTTAGATGTGC------ATATT--AACT-TTC-TTGA-ACTG-------G-------CAGGTTTAAGTAGTATCCAAGAAATTCTCTTCG-TCAAAAAGTTTCACCAAG---ACATACA-CCTGGAAT-AACATTCCTTAATTCCTTAC-----AAAT-GC------CAGCCACAACACC-ATGATGAA-ATTACTGAAATTG--AAGTGTACGA------TGTTAACT-ATT-A-AACCATGATCCGACTTTCTTCCAC-TT----------AT-CTCTAATAAACAAAT--ACCATAAAAGAA-TGCAAAGGGAA-ACAG--CAGAA-ATCT---CGCAC-G-TA-TTT-GTA
gi|12 : tATTACCAAA---TT-AGG-TAATTGTTTG--------TTGGTGC-AT-A-TG--AA-CAA-GAGTG--GAA--A-TC--T-Ct
gi|12 : a-G-AAGCACATTG-TAC-T-GAA-AATT-TAGT-T-GCA-CACAGC-TG------------CACG-TTG--AG--AAGGGAAGT-GAAAAGAGAGGCTGT-TT-------TGC---AAGTAAA-----------------------A-TGTTACA-A--TA----T-ACTAA--AC---CACTAA-C-AAT--AT---ATCA-T-TTCCG----TTC-A---GT-T-T-A-A----AGT-G-AAACA--T--TT-GG--C--T-A-C-AA--TTT---------------------------A-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAATATCACA---T-GCTACAA--TAAACA-ATGagtttttctttttaattttccaattctccttctgaagcacattgtactgaaaatttagttgcacacagctgcacgttgagaagggaagtgaaaagagaggctgttttgcaagtaaaatgttacaatatactaaaccactaacaatatatcatttccgttcagtttaaagtgaaacatttggctacaatttactcttcgtcagtgcaaggaagtaaatatcacatgctacaataaacaatg
gi|13 : aattaccaaattaggtaattgtttgttggtgcatatgaacaagagtggaaatctcagtttttctttttaattttccaattctccttctATG--GAA--A-TC--T-CG-TGA----T-GTTG-C-AAAA-A--GTGG-TA-ATACATTT-GTCT---ATGGC-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TAGT-T-CCA-CACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGATACA-A--TG----G-ACTAA--AC---CACTAA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-T-A-A----AGT-G-AAAAA--TG-TT-GG--T--T-A-C-AT--TTT---GTACAGT-----ATG--CC-TTTAA-CTC--TT-GGT-CA-GTGC-AAGGAAGTAAAGATGACG---T-GCTACAA--TAAACA-A
gi|14 : CTTTTCCGATA-TACCA--------------CAGATGCAGGCAG-TTGATAAA-----GA-TGGATCAA-AGA------GTCAAGTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTCCTTGAGACTG-------A------GCAAGTT-AAGTA-TCCCAAAGAACATC-CT-CGGTCAAAA-GGT---TCAGT---ACATACA-CCTGGAATTAC-ATACTTCATTTTCATAATACATGTAT-GCA----TCAG-CG-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTGC-A------TGTTAAGTAATT-G-AAACCTGGTCCGACATTCTTCCAC-TT----------AT-CTCTAAT-AACAAAT--GC
gi|15 : ACTTTCTTAA------TATCGCA----GCAG-CA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTA
gi|16 : taACTTTCTTAA------TATCGCA----GCAG-CA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-ATACATGTATTAAGGTACT-ATAAACATGGCCCAACAT--CTCCACTTT----------AT-CTC-AAT-AACAAAT--CGCATTAA--GA-TGCAAGGGGAATAATGGTCGGAACCT-TAACCGC-C-G-TACTTTGGTAt
gi|17 : taAGTCTAT-CT-------GGC---AAGTAGA-------------------------T-TTACA-A--TG----G-ACTAA--AA---CACTAA-C-AAT--AT---TTCA-T-TTCCA-----TC-AGGTGT-T-A-A-A----AGT-G-AAACA--T--TT-TG--T--C-ACC-AACTTTT---GGTCA---------------TT--G-CTC--TT-CGT-CA-GTG---AAGAAGTAAAGATt
gi|18 : AAGTAGATTGT-CTAGTCATTTGC---AA-TAGG-----------------------A-TTTTACG-ACATG----G-ACTAA--ACAC-CACTAA-CCAAG--AT---TTCA-T-T-CCA----TTC-A---GT-T-T-A-A----AGT-G-AAACA--TT-TT-GG--TCGC-A-C-AA--TTTG--GTTCAG---------------TTAG-CTC--TTACGT-CA-GTGCGAAGGAAGTAAAGATgttttggtaataattaacaagttgtccacatttgg
gi|19 : TTC-GATA-AACGAGT---GGCTTT-AC--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|19 : tgctcgTTAACTTTCTTAA------TATCGCA----GCAG-CA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|2 : tgctcgttcgataaacgagtggctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--G-A--A-TC--T-CA-TGA----T-ATTG-CAAAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--AT-A-A-G-AAGCGCATTT-TAC-T-GAA-AA-T-TATT-TCCCACCACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----GAACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-TAA-A----AGT-G-AAAAA--TG-TT-GGTTT--T-A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATC--------------AATTTTCGGAACGGACAATTTACTAC-TG-A-G--------CCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCATTGATGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA-----GGG-TAATATCTCAAGCATAACTT---ATGCAAATAAGAATAAGCTTATTGTACGACCTGTTTAAA-TGAACCAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTG-CAAATTGGCATGAT-CTTTT-CCTTTTTCTGATT-AACTAGT---G-CTTT-ACCAGATGCAA-CAATTTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGAT-TG-------ACATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTC-AAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTTCTTA-----ATAT-GCA----GCAG-CA-AACAGTAATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATTAA-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAA-GGGAA-ACTG--CAGAACAT-T---CGC-C-GTTA-TTTGGTAAATGac
gi|20 : TTTCTGATA-AACTAGT---G-CTTT-AC--AATGCAA-CAA-TTTTTAAAA----GA-CGGA--AGCAGA------GCCAAGTC--A-GTT---------------AGATTT-AACT-TTC-TTAA-
gi|20 : TTAACTTTCTTAA------TATCGCA----GCAG-CA-AACATT-ATG--GAATG-TACTGAAAATGAAAAGTGTAC-A------Ttatcgcagcagcaaacattatggaatgtactgaaaatgaaaagtgtacatac
gi|21 : tttctgataaactagtgctttacaatgcaacaatttttaaaagacggaagcagagccaagtcagttagatCTAT-CT-------GGC---AAGTAGA-----------------------T-TGTTACA-A--TG----G-ACTGA--AC----ACTAAAC-AAT--AT---TTCA-T-TTCCA----TTC-AAG-GTGT-T-A-A----AGT-G-AAACC--T--TT-TG--T--C-A-C-AA--CTTTTGGTTCA-T-----GTG--C----------C--TT-CGT-CA-GTGC-AAGGAAGTAAAGAac
gi|22 : tTACTGAAAATG-AAAGTGTAC-A------TATTAAGTATTT-A-AAACATGGCCCAACATTCTTCCAC-TTGTGACCACTTAT-CTCTAAT-AACAAA-----------------GCAAGGAAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGTA
gi|23 : AAATT-TTA-ATGT-AATG-------A------GCCACCTTAAGTAGTATCAAAGAAATTC-CTTCGCTCAAAAAGGT--GTCGGT---ACATACAGCTTGAAAT-AA-ATTC------------A-----ATAT-GCA----GCAG-CA-AACATT-ATG--GAATATTA
gi|24 : aACATTACCAAA---AT-TGG-TACTT-TTTG--------TTGT------------------A-GAATG--GAA--A--------G--GA----T-ATTG-C-AAAA-A--GTGG-GA-AATTATTT-GTCT---ATGGC-ATTAAT-TTCCT-GTAC--ATAA-A-G-AAGCGTATTG-TAC-T-GAA-AA
gi|25 : ACGGATAATTTGCTAC-GGTA-G--------CCGGGAAA-TA--TATCCTTTCTAAAGATTGAAA-TAACAT---TGAT---GTGTAATAACTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TA
gi|26 : ATTACCAAA---AT-TGG-TAATT-TTTG--------TTGTTCG-AC-A-TG--AA-CAA-GAATG--AAA--A-TC--T-CG-TGA----T-ATTG-C-TNAA-A--GAGGAGA-AA--AT----TCT---AT----ATCAGA-ATCAT--TAT--AT
gi|27 : T-ACCGGATGCAG-CAG-TTGATAAAA----GA-TGGA--AGCAGA------ATCAATTC-AA-GTTTAGATGTA-------AAATTTAAAGT-CTC-TTta
gi|28 : gaaatgaattggtactcttttcccataA--TT-TT-GG--T--T-A-C-AA--TTT---GTTCAGTGCATCATG--CC-TTTAG-CTC--TT-CAT-CA-GTGC-AAAGAAGTAAAGATCACG---T-GCTACAAT-TAAACA-ATAA
gi|29 : tT-A-AAACATGGCCC-ACATTC-TCCAC-TT----------ATGCTCTGAT-AACA-------CATTAA--GAGTGCCAAGGGAA-AATG--C-GAAGAA-T---CGC-CGG-TA-TT--GTA
gi|3 : ACATTACCAAA---AT-TGA-TAATT-TTTG--------TTGTTCT-AT-A-TG--AA-CAA-GAATG--GAA--A-TC--T-CA-TGA----T-ATTG-C-AAAA-A--GTGG-GA-AATCAATT-GTCT---ATGGT-ATTAAT-TTCAT-GTAT--ATAA-A-G-AAGCGCATTT-TAC-T-GAA-AATT-TATT-T-CCA-CACAGC-TG------------CGTC-TTG--AG--AAGGGAAGT-GAAAAGGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TGTTACA-A--TG----G-ACTAA--AC---CACTGA-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-T-A-A----AGT-G-AAAAA--TG-TT-GG--T--T-A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGGAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATC--ATCATTT---------------TCGGAACGGACAATTTACTAC-TGTA-G--------CCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGATGATATGTAATAATTTGCTTTCCAT--AT-GCAG-TTATT-TTTCCC-TATCATCAAGAAAACACATATGGAAT-AGAATGCCATCGGATTTTATA---ATGGG-TAATATCTCAAGCATAACTT---ATGC-AATAAGAATAAGCTTA-TGTACGACCTGTTA-AA-TGAAACAGCATACATATATATTTT--TAGCACGATATATCTTCCGTACAAA-CATTG-CAAATTGGCATGAT-CTTTT-CCCTTTTCTGATT-AACTAGT---G-CTTT-ACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCATA------GCCAAGTC-AA-GTTTCGATGTG-------ACATTTAAAGT-TTC-TTGA-ACTG-------G------GCAAGTTTAAGTAGTATCAAAGAAATTC-CTTCATTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA-----ATAT-GCA----GCAG-CA-AACAGT-ATG--GAATATTACTGCAAATG-AAAGTGTAC-A------TGTTAAGTAATT-A-AAACATGGCCCTGCATTCT----C-TT----------AT-CTCTAAC-AACAAAT--ACCATTAA--TA-TGCAAGGGGAA-ACTG--CAGAACAT-T---CGC-C-G-TA-TTTGGTAAATGTt
gi|30 : TCCAC-TT----------AT-TTCTAAT-AACAAATTTACCATTAA--GA-TGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|31 : ----------AT-CTCTAAT-AACAAAT--ACAATTAA--GA-TGCAAGGGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTTGGT-AATGT
gi|32 : CCAC-TT----------AT-CTCTAAT-AACAAAT--GCCATAAA--GA-GGCAAGGGAAA-ATTG--CGGAACAT-T---CGC-C-G-TA-
gi|34 : GAAGT-GAAAAAGGAGGCTGT-CT-------TGC---AAGTATA-----------------------A-
gi|35 : TAG-CTC--TT-TGT-CA-GTGC-AAGGAAGTAAAGA
gi|4 : ATTACCAAT---AT-TGG-TAATT-TTTG--------TTGT-CC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-C-AAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAG-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-T-CCA-CACAGC-TG------------CGTC-TTGACAA--AATGGACGT-GGAAAAG--GGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----G-ACTAA--AC---CACTAC-C-AAT--AT---TTC--T-TTCCA----TTC-A---GT-T-T-A-A----AGT-GAAAAAA--CG-AT-GG--T--T-A-C-AA--TTT---GTTCAGT-----ATG--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGG-AGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTC-TTCTAAAGATTAAAA-TGGCAT---TGAT---ATGTAAT-ATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATATATA-----TTT--TAGCACGATATAGCTTCCGTACAAA-CATTG-CAAATTGCCATGAT-CTTTTGCTCTTTTCTGATT-AACTAGT---G-CTTT-ACCAGATGCAA-CAA-TTGAT-AAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTG-------GCCGCGCGCAAG-TTAAGTATTATGAAAGAAATT--ATTCGGTCAAAAA-GT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTCATTTTCTTAA-----ATAT-GCA----GCAG-CA-AACATT-ATG--GAATATTACTGAAAATG-AAAGTGTAC-A------T-TTAAGT-ATT-A-AAACATG--CCAACATTCTTCCAC-TT----------TT-CTCTAAT-AACAAAT--ATCATTAA--GA-TGCAAGAGAAA-ACTG--CGGAACAT-T---CGC-C-G-TA-TTCGGT-AATGT
gi|5 : TACCAAT---AT-TGG-TAATT-TTTG--------TTGTTCC-AT-A-TG--AA-CAA-GAATA--GAA--A-TC--T-CG-TGA----T-ATTG-C-AAAA-T--GTGG-GA-AATCATTT-GTAT---ATGAC-ATTAAT-TTCAT-GTGT--ATAA-A-G-AAGCGCATTG-TAC-T-GAA-AATT-TATT-T-CCA-CACAGC-TG------------CGTC-TTG--AC--AATGGACGT-GGAAAAGGAGGCTGT-CT-------TGC---AAGTAGA-----------------------A-TTCTACA-A--TG----G-ACTAA--AC---CACTAC-C-AAT--AT---TTCA-T-TTCCA----TTC-A---GT-T-T-A-A----AGT-GAAAAAA--CGATTGGG--T--T-A-CAAA--TTT---GTTCAGT-----ATG--CT-TTTAGACTCTGTT-CGT-CA-GTGC-AAGAGAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACATTT--AAT-TTCGGAACGGACAATTTACTAC-GGTA----------CCGGGAAATTG--TCTTCTTTCTAAAGATTAAAACTGGCAT---TGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATTAAGAAAACGCATAAGGAATGAGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGCGAAACTT---ATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAGCATATATA-----TTT--TAGCACGATATAGCTTCCG-ACAAA-CATTGCCAAATTGCCATGATCCTTTT-GCTCTTTCTGATT-AACTAGT---G-CTTTAACCAGATGCAA-CAA-TTGATAAAA----GA-CGGA--AGCAGA------ACCAAGTC-AA-G-------------------ATTTAAAGT-TTC-TTGA-ACTGGCCGCGCG------GCAAGTTTAAGTATTATGAAAGAAATTA-TTCGGTTCAAAAAGGT--GTCAGT---ACATACAGCCTGAAAT-AA-ATTCTTTATTTTCTTAA-----ATAT-GCA----GCAG-CA-AACATT-ATG--GAATATTACTG-AAATG-AAAGTGTAC-A------TATTAAGTAATT-A-AAACATGGCCCAACATTCTTCC
gi|6 : TTAC--AA---AT-TGG-TAAGT-TGCT--------TTGTTCC-ATCA-TG--AA-CAA-GAATG--GAA--ACTC--TTCG-TGA----TTATTG-C-AAAA-AAAGTGG-GACAATCATTT-CTCT---ATGGCCATTAAT-TTCATTGCACTGATAA-G-G-AAGCGTAT-G-TAC-T-GAACAAT---AGT-T-TCA-CACAGCCTG------------CGTCCTTG--AG--CAGGGACGT-GAAAAAGGAGGCTGT-CC-------TGC---AAGTAGA-----------------------ACTGCTACA-A--TAA---G-ACTAA--AC---CACTAA----AT--AT---TTCA-T-TTCCA----TT------AT-T-T-T-A----AGT-G-AAAAA--TG-T--GG--T--T-A-C-AA--TTT---GTTCAGT-----AT---CT-CTTAG--TC--T--CGT-CATGTGC-AAT-AAGTAAAGACTACG---TTGCTACA---TAAACACATGATAC-ATCATTTAAACGTTTTAAATCTTCGGAACGGACAACTTACTACAGGTAAG--------CCGG-AAA-TGACTCTTTTCTATAAAGATTGAAA-TGGCAT---TGATC--ATGTAATAATTTGCTTTCCATTTATTGCAGATTACTATTTCCC-TATTA-----------CATAG---AT-AAAATGCCATAGGATTTTATA---AGGGGGTACTATC-CATGCGTAA-TT---ATGC-AATACGAATAATCTTA-TGTACGACCTGTTT-AATTAAAAAA----ACATATA-ATTTTTCTAGCACGATATA-CTTCCGTACAAATCATTG-CAAA-TGGCTTGAT-CTTTT--GCTCTTCTGACTAAACTA-T---G-CTTT-ACC--ATG-AA-CAA-TTT-TAAAATTAGAA-CGGA--AACAGA------GCAACGTC-AAGGTTT-AGAGTGA------ACATTAACAGTATTC-TTGA-ACT--------G------GCAAGTTTAAG
gi|7 : --AT---TT---T-TTCCAAGATTTCTA---GG-T-T-ATA----AGT-G-AAAGAGATG-T--GG--T--T-A-C-A---TCT---GTTCAGT-----ATCATCCATTTAG--TC--TT-CGTTCA-G-GC-AAGGAATTAAAG-CCACG---T-GC-ACAACATAAACA--TGATATAATCATTTAAACATTT--AATCTTCGGAACGAACAATTTACTAC-GGTA-GGCCGGTAGCCAGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAAGAAAACACATAAGGAAT-AGAATGCCATCGGATTTTATA---AGGGG-TAATATCTCATGTGTAACTTATCATGC-AATACGAATAAGCTTA-TGTACGACCTGTTT-AA-TAAAACAG----CATATA-ATTTT--TAGCACGATATAGCTTCTGTGCAAA-CATTG-CAAATTGGCACGAT-CTTTT-gtta
gi|8 : aattatctatgcatatataatgaagatagcgtatttttactattgattaaattaatagacattctgaaagcatcactcatgcagctgtttacatctgatgcaagatcgatttataatggatggctatctgcaagttggagcctaatgtactaaattagtgactttttaatctgacaccatctagtttgccggCATTAC--AA---AT-TGG-TAATT-GTT----------TGTTCC-AT----G--AA-CAA-GAATG--GAA--A-TC--T-CG-TGA----T-ATTG-C-AAAA----GTGG-GA-AATCATTT-GTCT---ATGGC-ATTAAT-T-CAT-GCAT--ATAA-A-GGAAGCGTAT-G-TAC-TTGAA-AATT-TAGT-T-TCA-CACAGC-TG------------CGTC-TTG--AG--CAGGGACGTCGAAAAAGGAG-CTGT-CC-------TGC---AAGTAGA-----------------------A-TGCT-CA-A--TA----G-AC-AA--AC---CA-TAA-C-A-T--AT-----CA-TCTTCCA----TT------AT-T-T-T-A----AGT-G-AAAAA--TG-TT-GG--T--T-A-C-AA--TTT---GTTCAGT-----ATA--CC-TTTAG-CTC--TT-CGT-CA-GTGC-AAGTAAGTAAAGATCACG---T-GCTACAA--TAAACA-ATGATA--ATCATTTAAACTTTT--AATCTTCGGAACGGACAATTTACTAC-GGTA-G--------CCGGGAAA-TG--TCTTCTTTCTAAAGATTGAAA-TGGCAT---TGAT---ATGTAATAATTTGCTTTCCAT--AT-GCAG-TTACT-TTTCCC-TATTATCAA-------------GAAT-AGAATGCCATGGGATTTTATA---AGGGG-T-ATATCTCATGCGTAAgctct
gi|9 : CCAAATTTGT-TGGATAAGT-TTTGATCTGGGATTGTGC--AT-A-TG--AAACAAAGAATG--GAACTA-TGAAT-CGATGGGATTT-ATTGGT-AAAA-A--ATTC-GAGAATCATTT-GTCTGCTATG-C-ATTACT-CTTCT-GTAT--ATAA-AAG-AAGCGCATTGGTACAT-GAATAATT-TAGT----CA-CGCAGC-TC------------CGTC-TTC--AG--AAGGAAAGTTGAAAAGGGAGGCTGTTCT-------TGCCATAGGTAAT-----------------------A-TGTT-CAGA--TGTATTG-ACTAACAAC---TACTA--C-AATCTATG--TTCAGT-TTCCA----TTC-C---GT-TAT-A-A----AGTTG-AAAAC--TT-TT-GG--T--TTA-C-A---TTT---GTTCAGT-----ATG--CCTTTTAG-CTC---T-CGT-CA-GTGC-AAGGAAGTAAAAATCACGTGAT-GCTATAA--T-AACA-ATGATA--AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): GGGAAATGAATTGGTACTCTTTTCCCTAATAACCAAGCATGCA
Unaligned ( gi|36 ): ATGGGAAATGAATTGGTACTCTTCTCCCT