lowQualScore : 1 444444444444444444 1 2222 11111 1111
lowQualScore : 99 6 5 3 99 44 999999999999999999 2 2 6 66666 2 0 2 0000 4 4 66 11111 4 4 0000
lowQualScore : .. . . . .. .. .................. . . . ..... . . . .... . . .. ..... . . ....
lowQualScore : 22 7 0 2 22 22 777777777777777777 7 7 6 77777 9 5 9 9999 4 4 11 11111 4 4 6666
consensus : AAAAAGCAAC--A-T-AATCAAAGATAT--TCA--CTGAT-----AT-----C-----TTTACA-AAA-TTAAGA-----GGGGGGCG-CCG-TGTGT-T-AA-TTT-A--TTAA-----TTTTTC-CA-GTGAA----AAAATA
Reference ( gi|7 ) : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-----TTTACA-AAA-TTTAGA-----GGGGGGCG-CAG-TGTGTTT-AA-TTT-A--TTAA-----TTTTTC-CA-GTGAA----AAAATA
gi|17 : AGAAAGCAAC--A-TAAATCAAAG-TATTGTCA--TTGA-------------C-----TTTACT-GA----TAAA-----AGAGGGCG-CCG-TGTGT
gi|3 : AAAAACCAACTGA-T--ATCAAA--TAA--TC---CTG-T-----AG--------------ACATAAA-TTAAGA-----GTGGGGCGGCTG-TGTGGT--AA-TTT-ACTTTAA-----TTTTTC-CA-GTGGA----ATAATA
gi|16 : ttgaatatactattcgttaagtaaaaAAAAGCA-C--A-T-GATCAAAGATAT--TCAACTTGAT-----ATATAATC-----TTTACA-AAA-TTAAGA-----GGGGCGCgacgaattcattaatagtgttgccttggtaaaagtttgtatggggggtggggggcggg
gi|15 : agAAAAGCAAC--AATAAATCAAAGATAT--CAA--CTGATCTATAATT----C-----TTTAAA-AAA-TTAAGA-----GGGGCGCc
gi|9 : agAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-----TTTACA-AAA-TTTAGA-----GGGGGGCG-CAG-TGTGTTT-AA-TTT-A--TTAA-----TTTTTC-CA-GTGAA----AAAATA
gi|8 : AAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-----TTTACA-AAA-TTTAGA-----GGGGGGCG-CAG-TGTGTTT-AA-TTT-A--TTAA-----TTTTTC-CA-GTGAA----AAAATA
gi|4 : CA--CTGAT-----ATTAAT-C-----TTTACA-AA---TTAAA-----AAAGGGGG-CGG-CGTGTGTAAA-TTT-A--TGAATTTTTTTTTTC-CA-GTGAA----TAAATA
gi|20 : tgaaatacattcatcgttaaggaaaaaaaaaaaCA--CTGAT-----ATATACTC-----TTTACA-AAA-TTAAGA-----AGGGGGCG-CCG-TGTGtaaagattcatattacatcttgttaa
gi|6 : A--CTGAT-----ATATTATC-----TTTGCA-AAA-TTAAGA-------GGGGCG-CCG-TGTG--T-AA-TTT-A----AA------TTTTC-CA-GTGA
gi|5 : aatggaatatacttttacatcgttaaggggaaaaaacccaA--CTGAT-----ATATAATC-----TTCACA-AAAACTTA-A-----GAGGGGCG-CAGCCGTGTGT-AATTTT-A--TT-A-----TTTTTCGCAGGTGAA----AAAA
gi|12 : ttctgaaatacatcgtaaagaacaaaaaaggaA--CTGAT-----AT-----AAAATATTTACA-AAA-TTAAGAGGGGGGGGGGGCG-CCA-TGTG--T-AG-TTT-A--TTG---------TTC-CA-GTGAA----acaataaagtattacacttg
gi|10 : cccaA--CTGATGTATAAT-----C-----TTTATA-AAA-TTAAGA-----GG-GGGCG-CCG-TGTGt
gi|11 : atgaatttcttttgaaatacatcgttaaggaaaaaaacccaA--CTGAT-----ATATAATC-----TTTACA-AAA--TTAAA-----GGGGCGCG--GG-TGTG
gi|14 : aataaatctgatcatcctttaagaaaaataaaccct-----AT-----T-----TTTACA-AAA-TTAATA-------GGGGCG-CCG-TGTGT
gi|13 : aaatacgtcgttaagaaaaaaaaccaattgatatataCA-AAA-TTAAGA-----GGGGGGTG-C-G-TGTGT---AA-TTTCA--TTAA-----TTTT-C-CA-GTGAAACGTAAAATA
gi|18 : GGGGGTG-CCG-TGTGT---AA-TTT-A--TTAA-----TATTGC-CT-GTGAA----AAAtattacacttg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTAAGTAAAAAATAATGCCAACTGATATTGTAATCGTTTACGAATAAGTAAGGAGTGGGGCGCCACGTTGTGGAATGGTATATAATTTTTTGCGTCAGTGGAAAAAGTGAAGATTATGATATTTTACTGATTCTGTGGTTGGTTAAATTTTATATGGGGGGGGGGTGCCGGGTGCGGTTGTGCAGCCCCCCTCCTCCCTTAA
Unaligned ( gi|2 ): TTAAGTAAAAAATAATGCCAACTGATATTGTAATCGTTTACGAATAAGTAAGGAGTGGGGCGCCACGTTGTGGAATGGTATATAATTTTTTGCGTCAGTGGAAAAAGTGAAGATTATGATATTTTACTGATTCTGTGGTTGGTTAAATTTTATATGGGGGGGGGGTGCCGGGTGCGGTTGTGCAGCCCCCCTCCTCCCTTAA
Unaligned ( gi|19 ): CTAATGAATTTCTTTTGAAATATCGTTAAAAAAAAAACCAACTGATAT
Unaligned ( gi|21 ): GATGAATTTATTTTGAAATACATCGTTAAGAAAATAAACCC
Alignments
lowQualScore : 1 1 11111 5555555555555 111 1111
lowQualScore : 66 5 5 0 0 55 33 11111 5555555555555 2 66 33 4 888888 2 2 4 333 99 3 44 6 999999 4444 3 3 7777
lowQualScore : .. . . . . .. .. ..... ............. . .. .. . ...... . . . ... .. . .. . ...... .... . . ....
lowQualScore : 99 0 0 0 1 55 44 88888 2222222222222 2 11 11 4 444444 1 2 7 777 22 3 66 7 555555 2222 3 3 7777
consensus : AAAAAGCAAC--A-TCAA-TCAAAGATATT--CA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
Reference ( family-12457 ) : AAAAAGCAAC--A-T-AA-TCAAAGATATT--CA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|1 : A--CTGAT-----AT-----TGTAATCGTTTACG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTG-TGGAATGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAA
gi|10 : ttaagtaaaaaataatgccaA--CTGATGTATAAT-----C-------TTTATA-AA--A--TTAAG-A------GGGGGC-G-CCGTG-TG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|11 : atgaatttcttttgaaatacatcgttaaggaaaaaaacccaA--CTGAT-----ATATAATC-------TTTACA-AA--A--TTAA--A-----GGGGCGC-G--GGTG-TG-
gi|12 : aataaatctgatcatcctttaagaaaaataaaccctA--CTGAT-----AT-----AAAATA--TTTACA-AA--A--TTAAG-AGGGGGGGGGGGC-G-CCATG-TG--TAGTT--T-A--T-TG---------TT----C-CA-GTGAA----
gi|13 : cccaCA-AA--A--TTAAG-A-----GGGGGGT-G--CGTG-TG--TAATT--TCA--T-TAA------TTTT----C-CA-GTGAAACGTAAAATAt
gi|14 : -----AT-----T-------TTTACA-AA--A--TTAAT-A-------GGGGC-G-CCGTG-TG-Ttattacacttg
gi|15 : aaatacgtcgttaagaaaaaaaaccaattgatatataAAAAGCAAC--AAT-AAATCAAAGATATC--AA--CTGATCTATAATT----C-------TTTAAA-AA--A--TTAAG-A-----GGGGCGC-
gi|16 : agAAAAGCA-C--A-T-GA-TCAAAGATATT--CAACTTGAT-----ATATAATC-------TTTACA-AA--A--TTAAG-A-------GGGGC-G-CC
gi|17 : agAGAAAGCAAC--A-T-AAATCAAAG-TATTGTCA--TTGA-------------C-------TTTACT-GA------TAAA-A-----GAGGG-C-G-CCGTG-TG-T
gi|18 : GGGGGT-G-CCGTG-TG-T-AATT--T-A--T-TAA-----TATTG----C-CT-GTGAA----AAA
gi|2 : gaA--CTGAT-----AT-----TGTAATCGTTTACG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTG-TGGAATGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAAtaagattatat
gi|20 : ttaagtaaaaaataatgcca--CA--CTGAT-----ATATACTC-------TTTACA-AA--A--TTAAG-A-----AGGGGGC-G-CCGTG-TG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|3 : AAAAACCAACTGA-T-A--TCAAA--TAAT--C---CTG-T-----AG----------------ACATAA--A--TTAAG-A-----GTGGGGC-GGCTGTG-TG-GTAATT--T-ACTT-TAA-----TTTTT----C-CA-GTGGA----ATAATA
gi|4 : ttgaatatactattcgttaagtaaaa--CA--CTGAT-----ATTAAT-C-------TTTACA-AA--T--TAAAA-A-----AGGGGGC-G-GCGTG-TG-TAAATT--T-A--T-GAATTTTTTTTTT----C-CA-GTGAA----TAAATAgacgaattcattaatagtgttgccttggtaaaagtttgtatggggggtggggggcggg
gi|5 : tgaaatacattcatcgttaaggaaaaaaaaaaaAAAG-AAC--A-A-AA---AAGGA-------A--CTGAT-----ATATAATC-------TTCACA-AA--AACTTAAG-A-----GGGGCGCAG-CCGTG-TG-TAATTT--T-A--T-T-A-----TTTTT----CGCAGGTGAA----AAAAtaaagattcatattacatcttgttaa
gi|6 : ttctgaaatacatcgtA--CTGAT-----ATATTATC-------TTTGCA-AA--A--TTAAG-A-------GGGGC-G-CCGTG-TG--TAATT--T-A-----AA------TTTT----C-CA-GTGAacaataaagtattacacttg
gi|7 : aatggaatatacttttacatcgttaaggggaaaaaacccaAAAAAGCAAC--A-TCAA-TCAAAGATATT--CA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|8 : AAAGCAAC--A-TCAA-TCAAAGATATT--CA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|9 : AAAGCAAC--A-TCAA-TCAAAGATATT--CA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTAATGAATTTCTTTTGAAATATCGTTAAAAAAAAAACCAACTGATAT
Unaligned ( gi|21 ): GATGAATTTATTTTGAAATACATCGTTAAGAAAATAAACCC
Alignments
lowQualScore : 1 11111 5555555555555 111 1111
lowQualScore : 77 5 1 1 77 33 11111 5555555555555 2 66 33 4 999999 2 2 4 333 99 3 44 6 999999 4444 3 3 7777
lowQualScore : .. . . . .. .. ..... ............. . .. .. . ...... . . . ... .. . .. . ...... .... . . ....
lowQualScore : 99 7 4 4 99 44 88888 2222222222222 2 11 11 4 333333 1 2 7 777 22 3 66 7 555555 2222 3 3 7777
consensus : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
Reference ( family-12457 ) : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|1 : A--CTGAT-----AT-----TGTAATCGTTTACG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTG-TGGAATGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAA
gi|10 : ttaagtaaaaaataatgccaA--CTGATGTATAAT-----C-------TTTATA-AA--A--TTAAG-A------GGGGGC-G-CCGTG-TG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|11 : atgaatttcttttgaaatacatcgttaaggaaaaaaacccaA--CTGAT-----ATATAATC-------TTTACA-AA--A--TTAA--A-----GGGGCGC-G--GGTG-TG-
gi|12 : aataaatctgatcatcctttaagaaaaataaaccctA--CTGAT-----AT-----AAAATA--TTTACA-AA--A--TTAAG-AGGGGGGGGGGGC-G-CCATG-TG--TAGTT--T-A--T-TG---------TT----C-CA-GTGAA----
gi|13 : cccaCA-AA--A--TTAAG-A-----GGGGGGT-G--CGTG-TG--TAATT--TCA--T-TAA------TTTT----C-CA-GTGAAACGTAAAATAt
gi|14 : -----AT-----T-------TTTACA-AA--A--TTAAT-A-------GGGGC-G-CCGTG-TG-Ttattacacttg
gi|15 : aaatacgtcgttaagaaaaaaaaccaattgatatataAAAAGCAAC--AATAAATCAAAGATAT--CAA--CTGATCTATAATT----C-------TTTAAA-AA--A--TTAAG-A-----GGGGCGC-
gi|16 : agAAAAGCA-C--A-T-GATCAAAGATAT--TCAACTTGAT-----ATATAATC-------TTTACA-AA--A--TTAAG-A-------GGGGC-G-CC
gi|17 : agAGAAAGCAAC--A-TAAATCAAAG-TATTGTCA--TTGA-------------C-------TTTACT-GA------TAA--A-----AGAGGGC-G-CCGTG-TG-T
gi|18 : GGGGGT-G-CCGTG-TG-T-AATT--T-A--T-TAA-----TATTG----C-CT-GTGAA----AAA
gi|2 : gaA--CTGAT-----AT-----TGTAATCGTTTACG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTG-TGGAATGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAAtaagattatat
gi|20 : ttaagtaaaaaataatgccaCA--CTGAT-----ATATACTC-------TTTACA-AA--A--TTAAG-A-----AGGGGGC-G-CCGTG-TG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|3 : AAAAACCAACTGA-T--ATCAAA--TAA--TC---CTG-T-----AG----------------ACATAA--A--TTAAG-A-----GTGGGGC-GGCTGTG-TG-GTAATT--T-ACTT-TAA-----TTTTT----C-CA-GTGGA----ATAATA
gi|4 : ttgaatatactattcgttaagtaaaaCA--CTGAT-----ATTAAT-C-------TTTACA-AA--T--TAAAA-A-----AGGGGGC-G-GCGTG-TG-TAAATT--T-A--T-GAATTTTTTTTTT----C-CA-GTGAA----TAAATAgacgaattcattaatagtgttgccttggtaaaagtttgtatggggggtggggggcggg
gi|5 : tgaaatacattcatcgttaaggaaaaaaaaaaaA--CTGAT-----ATATAATC-------TTCACA-AA--AACTTAAG-A-----GGGGCGCAG-CCGTG-TG-TAATTT--T-A--T-T-A-----TTTTT----CGCAGGTGAA----AAAAtaaagattcatattacatcttgttaa
gi|6 : ttctgaaatacatcgtaaagaacaaaaaaggaA--CTGAT-----ATATTATC-------TTTGCA-AA--A--TTAAG-A-------GGGGC-G-CCGTG-TG--TAATT--T-A-----AA------TTTT----C-CA-GTGAacaataaagtattacacttg
gi|7 : aatggaatatacttttacatcgttaaggggaaaaaacccaAAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|8 : AAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|9 : AAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTAATGAATTTCTTTTGAAATATCGTTAAAAAAAAAACCAACTGATAT
Unaligned ( gi|21 ): GATGAATTTATTTTGAAATACATCGTTAAGAAAATAAACCC
Alignments
lowQualScore : 1 11111 5555555555555 111 1111
lowQualScore : 77 5 1 1 77 33 11111 5555555555555 2 66 33 4 999999 2 2 4 333 99 3 44 6 999999 4444 3 3 7777
lowQualScore : .. . . . .. .. ..... ............. . .. .. . ...... . . . ... .. . .. . ...... .... . . ....
lowQualScore : 99 7 4 4 99 44 88888 2222222222222 2 11 11 4 333333 1 2 7 777 22 3 66 7 555555 2222 3 3 7777
consensus : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
Reference ( family-12457 ) : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|1 : A--CTGAT-----AT-----TGTAATCGTTTACG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTG-TGGAATGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAA
gi|10 : ttaagtaaaaaataatgccaA--CTGATGTATAAT-----C-------TTTATA-AA--A--TTAAG-A------GGGGGC-G-CCGTG-TG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|11 : atgaatttcttttgaaatacatcgttaaggaaaaaaacccaA--CTGAT-----ATATAATC-------TTTACA-AA--A--TTAA--A-----GGGGCGC-G--GGTG-TG-
gi|12 : aataaatctgatcatcctttaagaaaaataaaccctA--CTGAT-----AT-----AAAATA--TTTACA-AA--A--TTAAG-AGGGGGGGGGGGC-G-CCATG-TG--TAGTT--T-A--T-TG---------TT----C-CA-GTGAA----
gi|13 : cccaCA-AA--A--TTAAG-A-----GGGGGGT-G--CGTG-TG--TAATT--TCA--T-TAA------TTTT----C-CA-GTGAAACGTAAAATAt
gi|14 : -----AT-----T-------TTTACA-AA--A--TTAAT-A-------GGGGC-G-CCGTG-TG-Ttattacacttg
gi|15 : aaatacgtcgttaagaaaaaaaaccaattgatatataAAAAGCAAC--AATAAATCAAAGATAT--CAA--CTGATCTATAATT----C-------TTTAAA-AA--A--TTAAG-A-----GGGGCGC-
gi|16 : agAAAAGCA-C--A-T-GATCAAAGATAT--TCAACTTGAT-----ATATAATC-------TTTACA-AA--A--TTAAG-A-------GGGGC-G-CC
gi|17 : agAGAAAGCAAC--A-TAAATCAAAG-TATTGTCA--TTGA-------------C-------TTTACT-GA------TAA--A-----AGAGGGC-G-CCGTG-TG-T
gi|18 : GGGGGT-G-CCGTG-TG-T-AATT--T-A--T-TAA-----TATTG----C-CT-GTGAA----AAA
gi|2 : gaA--CTGAT-----AT-----TGTAATCGTTTACG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTG-TGGAATGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAAtaagattatat
gi|20 : ttaagtaaaaaataatgccaCA--CTGAT-----ATATACTC-------TTTACA-AA--A--TTAAG-A-----AGGGGGC-G-CCGTG-TG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|3 : AAAAACCAACTGA-T--ATCAAA--TAA--TC---CTG-T-----AG----------------ACATAA--A--TTAAG-A-----GTGGGGC-GGCTGTG-TG-GTAATT--T-ACTT-TAA-----TTTTT----C-CA-GTGGA----ATAATA
gi|4 : ttgaatatactattcgttaagtaaaaCA--CTGAT-----ATTAAT-C-------TTTACA-AA--T--TAAAA-A-----AGGGGGC-G-GCGTG-TG-TAAATT--T-A--T-GAATTTTTTTTTT----C-CA-GTGAA----TAAATAgacgaattcattaatagtgttgccttggtaaaagtttgtatggggggtggggggcggg
gi|5 : tgaaatacattcatcgttaaggaaaaaaaaaaaA--CTGAT-----ATATAATC-------TTCACA-AA--AACTTAAG-A-----GGGGCGCAG-CCGTG-TG-TAATTT--T-A--T-T-A-----TTTTT----CGCAGGTGAA----AAAAtaaagattcatattacatcttgttaa
gi|6 : ttctgaaatacatcgtaaagaacaaaaaaggaA--CTGAT-----ATATTATC-------TTTGCA-AA--A--TTAAG-A-------GGGGC-G-CCGTG-TG--TAATT--T-A-----AA------TTTT----C-CA-GTGAacaataaagtattacacttg
gi|7 : aatggaatatacttttacatcgttaaggggaaaaaacccaAAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|8 : AAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|9 : AAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTTAG-A-----GGGGGGC-G-CAGTG-TGTTTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
blockSeqs : TG . A A TG AC GTATA TGTAATCG T TA AC G GGGGGG A G T TTT GG C CT A TTTTTT TGCG G G ACGT
blockSeqs : . . C A . . CTATA ATAATC . . . . G . . . TTT . . . . T . . . .
blockSeqs : . . C A . . . AAAATA . . . . G . . . TTT . . . . T . . . .
blockSeqs : . . C A . . . ATAATC . . . . G . . . TG . . . . T . . . .
blockSeqs : . . . . . . . ATACTC . . . . A . . . GT . . . . T . . . .
blockSeqs : . . . . . . . ATAATC . . . . G . . . TA . . . . T . . . .
blockSeqs : . . ATTATC . . . . A . . . TA . . . . T . . . .
blockSeqs : . . TAATC . . . . G . . . T . . . . T . . . .
blockSeqs : . . TC . . . . A . . . T . . . . . . . . .
blockSeqs : . . C . . . . G . . . T . . . . . . . . .
blockSeqs : . . T . . . . G . . . T . . . . . . . .
blockSeqs : . . C . . . . G . . .
blockSeqs : . . C . . . . G . . .
blockSeqs : . . C . . . . . . . .
blockSeqs : . . C . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : .
blockSeqCons : TAATC******** ** T** ** ****
originalCons : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----AT-----C-------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TG-TTAATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
finalCons : AAAAAGCAAC--A-TCAATCAAAGATAT--TCA--CTGAT-----ATTAATC--------TTTACA-AA--A--TTAAG-A-----GGGGGGC-G-CCGTG-TGT--AATT--T-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTAATGAATTTCTTTTGAAATATCGTTAAAAAAAAAACCAACTGATAT
Unaligned ( gi|21 ): GATGAATTTATTTTGAAATACATCGTTAAGAAAATAAACCC
Alignments
lowQualScore : 3333333 11 1111
lowQualScore : 6 6 99 33 2222222 2 2 4 2 33 2 66 33 4 666666 2 2 888 2 44 3 6 3 44 6 999999 4444 3 3 7777
lowQualScore : . . .. .. ....... . . . . .. . .. .. . ...... . . ... . .. . . . .. . ...... .... . . ....
lowQualScore : 7 7 22 22 9999999 4 4 7 4 11 2 11 11 4 666666 1 2 222 4 66 3 7 3 66 7 555555 2222 3 3 7777
consensus : AAAAAGCAACA-TCAATCAAAGATAT--TCA--CTGATATA---T--AA-T-C-TT-TA--CA-AA--A--TTAAG-A-----GGGGGGC-G-CCG---TGTG-T--AA-T-TT-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
Reference ( family-12457 ) : AAAAAGCAACA-TCAATCAAAGATAT--TCA--CTGATAT----T--AA-T-C-TT-TA--CA-AA--A--TTAAG-A-----GGGGGGC-G-CCG---TGTG-T--AA-T-TT-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|1 : A--CTGATAT----TGTAA-T-CGTT-TA--CG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTGTG-G--AA-TGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAA
gi|10 : ttaagtaaaaaataatgccaA--CTGATGTA---T--AA-T-C-TT-TA--TA-AA--A--TTAAG-A------GGGGGC-G-CCG---TGTG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|11 : atgaatttcttttgaaatacatcgttaaggaaaaaaacccaA--CTGATATA---T--AA-T-C-TT-TA--CA-AA--A--TTAA--A-----GGGGCGC-G--GG---TGTG-
gi|12 : aataaatctgatcatcctttaagaaaaataaaccctA--CTGATAT----A--AAAT-A-TT-TA--CA-AA--A--TTAAG-AGGGGGGGGGGGC-G-CCA---TGTG-T--AG-T-TT-A--T-TG---------TT----C-CA-GTGAA----
gi|13 : ccca--CA-AA--A--TTAAG-A-----GGGGGGT-G-C-G---TGTG-T--AA-T-TTCA--T-TAA------TTTT----C-CA-GTGAAACGTAAAATAt
gi|14 : A--TTGATATA---T--AA-T-T-TT-TA--CA-AA--A--TTAAT-A-------GGGGC-G-CCG---TGTG-T--tattacacttg
gi|15 : aaatacgtcgttaagaaaaaaaaccaAAAAGCAACAATAAATCAAAGATAT--CAA--CTGATCTA---T--AA-TTC-TT-TA--AA-AA--A--TTAAG-A-----GGGGCGC-
gi|16 : agAAAAGCA-CA-T-GATCAAAGATAT--TCAACTTGATATA---T--AA-T-C-TT-TA--CA-AA--A--TTAAG-A-------GGGGC-G-CC
gi|17 : agAGAAAGCAACA-TAAATCAAAG-TATTGTCA--TTGA---------------C-TT-TA--CT-GA------TAA--A-----AGAGGGC-G-CCG---TGTG-T--
gi|18 : GGGGGT-G-CCG---TGTG-T--AA-T-TT-A--T-TAA-----TATTG----C-CT-GTGAA----AAA
gi|2 : gaA--CTGATAT----TGTAA-T-CGTT-TA--CG-AATAA--GTAAGGA-----GTGGGGC-G-CCACGTTGTG-G--AA-TGGT-A--TATAA-----TTTTTTGCGT-CA-GTGGA----AAAAtaagattatat
gi|20 : ttaagtaaaaaataatgccaCA--CTGATATA---T--AC-T-C-TT-TA--CA-AA--A--TTAAG-A-----AGGGGGC-G-CCG---TGTG-gtgaagattatgatattttactgattctgtggttggttaaattttatatggggggggggtgccgggtgcggttgtgcagcccccctcctcccttaa
gi|3 : A--CTGATATCAAAT--AA-T-C-CTGTAGACATAA--A--TTAAG-A-----GTGGGGC-GGCTG---TGTGGT--AA-T-TT-ACTT-TAA-----TTTTT----C-CA-GTGGA----ATAATA
gi|4 : ttgaatatactattcgttaagtaaaaaaaaaccaCA--CTGATAT----T--AA-T-C-TT-TA--CA-AA--T--TAAAA-A-----AGGGGGC-G-GCG---TGTG-TA-AA-T-TT-A--T-GAATTTTTTTTTT----C-CA-GTGAA----TAAATAgacgaattcattaatagtgttgccttggtaaaagtttgtatggggggtggggggcggg
gi|5 : tgaaatacattcatcgttaaggaaaaaaaaaaaA--CTGATATA---T--AA-T-C-TT-CA--CA-AA--AACTTAAG-A-----GGGGCGCAG-CCG---TGTG-T--AATT-TT-A--T-T-A-----TTTTT----CGCAGGTGAA----AAAAtaaagattcatattacatcttgttaa
gi|6 : ttctgaaatacatcgtaaagaacaaaaaaggaA--CTGATATA---T--TA-T-C-TT-TG--CA-AA--A--TTAAG-A-----GGGG--C-G-CCG---TGTG-T--AA-T-TT-A-----AA------TTTT----C-CA-GTGAacaataaagtattacacttg
gi|7 : aatggaatatacttttacatcgttaaggggaaaaaacccaAAAAAGCAACA-TCAATCAAAGATAT--TCA--CTGATAT------------C-TT-TA--CA-AA--A--TTTAG-A-----GGGGGGC-G-CAG---TGTG-TTTAA-T-TT-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|8 : AAAGCAACA-TCAATCAAAGATAT--TCA--CTGATAT------------C-TT-TA--CA-AA--A--TTTAG-A-----GGGGGGC-G-CAG---TGTG-TTTAA-T-TT-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
gi|9 : AAAGCAACA-TCAATCAAAGATAT--TCA--CTGATAT------------C-TT-TA--CA-AA--A--TTTAG-A-----GGGGGGC-G-CAG---TGTG-TTTAA-T-TT-A--T-TAA-----TTTTT----C-CA-GTGAA----AAAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTAATGAATTTCTTTTGAAATATCGTTAAAAAAAAAACCAACTGATAT
Unaligned ( gi|21 ): GATGAATTTATTTTGAAATACATCGTTAAGAAAATAAACCC