lowQualScore : 11111111111111111111111111111111111111111 111111111111 11111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111 1111111111111111 11111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111 11111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111
lowQualScore : 88888 55555 4 6666 1 11 1 1 55 1 5555555 22 4444 777 1 33333 1 9999999999 1 1 222 1 1 2 4 4 9999999999999999999 1 8888888 77777777777777777777777777777777777777777 33 4444444 55 4 9999999999999999999999999999 1 333333333333 4 55 1 33333333333333333333333333333333333333333333 333333 1 1 2 3333 000000000000000000000000000000000000000000000000000 1111 22 2 8888888 4 1 1 44 1 1 444444444 4 4 4 4 777 0000000000000000 4 5555 4 4 1 4 22 55555555555555555555555555555555555555555555555555555555 66666666666 444444 4 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222 55555555555 1111 3333 111111 222222 22 222222 444444444444 6666666666666666666666666666666666666666 11 1111 5555555 3333333333333333 22 222 1111111111111111111111111 33333 11111 44444444444444444444 1 1 111 1 22222 33333333333333 111 11111 1 22222 3333333333333 33333333333333333 222 44444444 1 11 222 2222 33333333333333333333333333333333333 2222 22222 111 444444444 33333 1111 5555 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 1111 22222 33333333 1 4444 1111111 222222 11111 1 1 1111 44444444444444444444444444 444444444 22222 5555555555555 22 9999999999999999999999999999999999999999999999999999999 1 33333333333 2222222 33333333333333333333333333 1111111111111111111111111111111111 111 7777777777777
lowQualScore : 22222 6 22222 0 1111 7 22 6 5 5 55 5 7777777 33 4444 000 5 44444 5 1111111111 5 5 2 111 5 5 0 2 0 0 2222222222222222222 5 1111111 22222222222222222222222222222222222222222 44 9999999 55 0 7777777777777777777777777777 5 999999999999 0 55 6 5 3 00000000000000000000000000000000000000000000 000000 5 5 3 0 5555 888888888888888888888888888888888888888888888888888 9999 77 7 2222222 0 5 5 66 5 5 222222222 0 0 6 0 0 111 8888888888888888 0 2222 6 0 0 6 5 0 11 6 88888888888888888888888888888888888888888888888888888888 6 33333333333 6 111111 6 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 3 55555555555 7 5 5 5 0 0000 5 3333 999999 888 66 0 3 555555 5 6 77 0 5 888 66 5 1 5 3 666666 0 66 5 5 444444444444 5 8888 5 5 8888888888888888888888888888888888888888 77 5 5 77 1111 77 2222222 77 88 5 8888888888888888 5 66 5 5 5 111 5555555555555555555555555 77 5 3 77 55555 5 99 22222 5 5 2 00000000000000000000 8888 0 77 1 0 5 000 0 5 5 4 77777 5 9 77 3 55555555555555 444 44444 5 55555 2222222222222 77 55555555555555555 5 3 5 66 5 5 444 11111111 1 2 99 44 0 444 6 3333 6 99 3 11111111111111111111111111111111111 0000 00000 777 3 8 999999999 0 44444 4444 0 4444 0 8 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 6 22222 1 22222222 2 5 5 0000 7777777 999999 44444 77 9 1 3333 5 5 6 6 99999999999999999999999999 000000000 77 5 33333 5 4444444444444 5 77 55 4444444444444444444444444444444444444444444444444444444 77 1 11111111111 77 3333333 77 5 9 77 44444444444444444444444444 5 1111111111111111111111111111111111 111 6666666666666
lowQualScore : ..... . ..... . .... . .. . . . .. . ....... .. .... ... . ..... . .......... . . . ... . . . . . . ................... . ....... ......................................... .. ....... .. . ............................ . ............ . .. . . . ............................................ ...... . . . . .... ................................................... .... .. . ....... . . . .. . . ......... . . . . . ... ................ . .... . . . . . . .. . ........................................................ . ........... . ...... . . ..................................................................................................................................................................................................................... ... . ........... . . . . . .... . .... ...... ... .. . . ...... . . .. . . ... .. . . . . ...... . .. . . ............ . .... . . ........................................ .. . . .. .... .. ....... .. .. . ................ . .. . . . ... ......................... .. . . .. ..... . .. ..... . . . .................... .... . .. . . . ... . . . . ..... . . .. . .............. ... ..... . ..... ............. .. ................. . . . .. . . ... ........ . . .. .. . ... . .... . .. . ................................... .... ..... ... . . ......... . ..... .... . .... . . ....................................................................................................................... ... .... . ..... . ........ . . . .... ....... ...... ..... .. . . .... . . . . .......................... ......... .. . ..... . ............. . .. .. ....................................................... .. . ........... .. ....... .. . . .. .......................... . .................................. ... .............
lowQualScore : 00000 0 00000 0 0000 0 00 0 0 0 00 0 0000000 00 0000 000 5 00000 5 0000000000 0 5 5 000 5 5 0 5 0 0 0000000000000000000 0 0000000 00000000000000000000000000000000000000000 00 0000000 00 0 0000000000000000000000000000 0 000000000000 0 00 0 5 0 00000000000000000000000000000000000000000000 555555 5 0 0 0 0000 555555555555555555555555555555555555555555555555555 0000 55 5 0000000 0 0 0 00 0 0 000000000 0 0 0 0 0 000 0000000000000000 0 0000 0 0 0 0 0 0 00 0 00000000000000000000000000000000000000000000000000000000 0 00000000000 0 000000 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333 7 00000000000 3 0 0 0 8 6666 0 1111 555555 888 99 1 4 111111 7 6 99 1 7 888 99 0 2 0 4 000000 4 99 0 0 555555555555 0 8888 0 0 5555555555555555555555555555555555555555 33 7 7 44 7777 99 0000000 99 00 7 4444444444444444 0 99 0 0 0 000 3333333333333333333333333 99 7 7 99 00000 7 44 44444 0 0 5 33333333333333333333 1111 1 11 4 0 0 555 0 0 0 4 11111 1 6 00 6 44444444444444 111 33333 4 77777 7777777777777 99 77777777777777777 4 2 0 99 7 7 333 66666666 7 7 55 33 7 222 7 8888 7 22 2 88888888888888888888888888888888888 0000 22222 555 2 0 000000000 8 00000 8888 8 4444 8 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 777 2222 7 00000 7 00000000 0 7 7 3333 0000000 444444 33333 99 7 4 3333 7 7 7 3 22222222222222222222222222 777777777 99 7 44444 7 4444444444444 7 99 00 0000000000000000000000000000000000000000000000000000000 99 4 77777777777 99 7777777 99 7 3 99 66666666666666666666666666 7 2222222222222222222222222222222222 777 3333333333333
consensus : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACCCGTCATGCAATTCATTATACCATTTTATGGCATGGGAAAAGGGGTAATGGTATGGGAAAACNACAAAACGTGTACCCTACAATTCAATTTNTTTGTCAAGTCGCATAGTATCCANGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA----TGGGGGGGGGGGGGGGGAGGGTC-AAAAAATTCTTCAAATCCAC------ATTATCA----TTATTGC-TCAATTACTT-CTAATTACAGCATTTATTGGT-TCATA-TTTGCC--TGCATTCTT-GATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAGAGGGGGCATCTATAANTNNGTTATCCNGACNTTANGTACANNTNGCCGCTGCNNNAGTACCTAGAAGGGNNAGAGTTCATTTATCTGACTTGGGGNATATGGCGTTNTTTATC-AATACNTTGTNAGTAATNCCTTTGGA-TCATATTATCAACGTCCAANGTTACTTTNCAACAACATTTTACCTTGATAAGCA---TGT-GGTGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-A-TTTAATTTGTG-CTCG-CGTCA--TGTGCTGAAA-TTTGGCTA-TGCCACT-GCACTACATTTCCAATT-GTGATTGCTTGTCTGGTAC-C--GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTG-ATATGGTGA-TTTGTGATTTTA-GCAC-CAATTGTGCGCT-CTCTT-ATTTCGTTG----AAAATTCACT--GGTGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAG-TTTGATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATT------GC-----CGC-C-CCA-TTCAG-TGT-TGGCGGACGG--GTCAAT-TACGTCGTCNA---T--GNNC-CGTTTGGCAT-AATTTTG-CA-TAGTTTG----C-TGTCTCCCGGGGGCACTG----T-TTT---TTC--CAGGTCCCCTGGG--CCA-AGAT-GGTANTTCTAT-GCTT---AA--TT-TATA-TGCTGCCAA----TTGTTT--CAT-CG-GCGC--GCATA---CA-AAAAT-TCAT-T-TGTT--GT--ATA-------------------------AT--TTATTAAA-TGGCCA-TG-AC-AAAC---ACGCC--AAACA--TA--ATATGA--CTC-GTGTT-TTTC-TTGGGATA--TT--GGGCAT-AT-T-T-GA-TAA-CCTAG--------N------AGCCAATAG-G--TGGTT-TCTGTTCTCTTTTG--TCTTGT-CGTCGTG-G-AGG----TGA-AAT-TTGTCGCA-ACAAATAAT-AGGTG---TTATCCA--C-TATGGA-T-AA-CC-TG--GTT-A-TT-TAGCG-CAAA-TT--AATTTATTT-TATTTATAA-G-C---------TAAAA--TTA-----GGTTAGG-----AAA--T---TA-C--GTCG--GGTT-CGACC---TTCN--TGTGTTGTGCATC-TGC--GCA-T-GTCC-AGATCA--AN-CTTCCTTTCACTTTG-C-GAATTCA--AAGAG-AGCAGACGT-T-AA-AA--TTAT------------TT----------------GATA-CCCAC--C-CTCC-CC--CC---TGCATTTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT---TAATTTTATCT--TTCAGCG-TCAT-GGTT-CAATA-TNGGTGTGTG--GGTT-ATCATTCCGGCGC-CTA--G-GAG---GCGGCCANGAACTGGAAT-TGATGGA--CGTTCGGC----TNTGA---CCTTGTG--CC---TTG---GTT--TCTGA-TCGGG-CTGGTAT-AATTTTTGC-A-TAGTTTG----CTGTC-ACC--GGGGG--CAC-TG-----TTT--TTTTCCAGGT-CCC-T-GGGCCA-AGA-TGGTANTTCT-ATGNTT------AAT--TT-A--TATGCTGCC-AA---TTG--T-TTCANTC-G-GCGC--AT------AC-A-AAA--AT-TCATTTG-TT-GT-TG----TA-A---T---TATTAA-------------------------ATGGCC--A-TGACA-AA--C---ACGCC--AAACA--T-N--ATATGA--C-TCGTG--TTTTTC-T---GGA-A--TT--GG---GCAATATTTGA-TAA-C---T----AGCT---A------A-G-------GTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGGGG-TGAAATTTGTCGCAAAATAA
Reference ( gi|1 ) : GGCCACTCTAGTCCATTAATTTTCACAAAGCTTAAAAATTTAATTCTTGTGGGTTTCA-TTAATATCTTTTGTCTATTTTATTTAGATTCCATCATCCATGGGCTCAATCAGTTTGCACTTGCA-ATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTT---GCATGGGAAGAGGGGTAATGGTATGGGAAAACT--------TGTACCCTACAATTCAATTTGTGTTTCAAGTCGCATAGT-TCCAGATATAATTGTT-ATTCA-TTGTGGTGGAAACAACATTGGTCAATCAAGCAACACACTTGGGGGGGGGCGGGGGG--GCTCCAAAAAATTCTTCAAATCCACTTTACAGTTATTAATAGTTATTGCTTCAA-CACTTCCTGA-TACAGCTATTATTGGTCCCATATTTTGCCGTTGCATTCTTGGATAAATTCATTTG-C-AAGTTCAGAAGACCTGTGAAAAAATGCTGGCTCCTAG--A----TTAACAGTTATT-AAATC--TTTCAGGGAGGGGGCATCTATAATTATG----CCTGATATT-CGTACAAATCAACAC-GCCTT-GT-T-TAGAAGGGTTGG--TTCATTTATCTGACTTGGGGAA-ATAGCA-TA-TTATCAAATACATTA-A--TAATG-CTTTGGATTCAT-TCATTAA-GT-TAAA---ACTTTCCAACAACATTT--CCTTGATCAGCAATCTGTGGGTGCTTTTTGTTG-CCAACTTGGTGGCACTTGGTTAGTAAG-CAATTTA-TTGCA-TCATTGTTAACCATTTACATGCACATGG-TCTTAA-TTCATATATTTTAATTTAGGTCTGGCCGGCATTTGTGCTGAAAGTTTGGGCAGTGCCATTGGCACTA-ATTTTCCATTGGTGATTGCTCTTTTGGTACACCAGTTGTAAGTTTGAT-TT--GCA-CAGTT---GTGCTTTCTATTTAC-AT---TGTGAATTTGAATAATGTAATTTTGTGACTTTAGGCACGCAATTGTGCGTTCCTCTTCATTT-ATTGAAAAAAAAT--ACTGGGGTGCAAAAT-GCA-GATTTACTATTGTGATT--GCTTTGTCT-GGTACCAGTAGTTTTGATTTAGACATTGTGCTCTTCCT-----ACTTC--ATTTGGTAAAAATT-------CACTGGGC---------TGC-AAAATT-----TGC-----CGC-C-CCA-TTCAG-TGT-TGG-GGATGGA-GTCAATCTACGTTGTCCA---T--GCCC-CATTTGGCAT-AATTTTG-CA-TAGTTTG----C-TGTC-CCGGGGGGCACTG----T-TTT---TTC--CAGGTCCCCTGGG--C-A-AGAT-GGTACTTCTAT-GCTT---AA--TT-TATA-TGCTGTCAG----CTGTTT--CAT-CG-GCG---GCAT----CA-AAAAT-TCAT-T-TGTT--G---ATA-------------------------AT--TTATTAAATTGGCCA-TG-AC-AAAT---ACGCC--AAAC---TA--ATATGA--CTC-ATGTT-TTTTATTGGGATA--TG--GGGCAT-A--T-T-GA-T-A-CCTAG--------A------AG------A-G--TGGTT-TCTGTTCTCTCTTG--TCTTGT-CGTCGTG-G-GGG----TGA-AAT-TTGTCGCATACAAATAA--AGGTG---TTATCCA--C-TATGGA-T-AA-CC-TA--GTT-A-TT-TAGCG-CAAA-T---AATTTAGTT-CATTTATAG-G-T---------TAAAG--TTA-----GGTTTGG-----AAA--T---TG-C--GTCG--GGTTGCGGTC---TTCA--AGTATTGTGCATC-TGC--GCA-T-GT-C-AGA--A--AA-CTTCCTTTCTCTTTA-C-AAACTCC--AAGAG-AGCAGACGT-T-AA-AA--TTAT------------TT----------------GAT--CCCAC--C-CTCC-CT--CC---TGTATTTAA-GTTTGGGAGC---GGTTGCTTTG--C--TT---TAATTTTATA---TTCAGCG-TCAT-GGTT-CAATA-TGGATGTGTG--GG------ATT-AGGCG--CTA--GAGAG---GT--TCAAG-ACTGGAA--TGATGGA--C--TCAGC---ATGTGGCAGCCTTGT---CC---TTG---GTT--TATGA-TTGAG-CTGGC-T-AATTTTTGC-A-TAGTTTG---TCTGTC-ATC--GGGGG--C-C-TG-----TTT--TTATCCAGGT-CCC-T-GGGCCA-AGA-TGGTACTTCTCATGCTT------A----TT-A--TATGCTG-C-AG---CTG--T-TTCAATC-G-GCGC--A-------AT-A-AAA--A--TCATTTG-T--GT-T-----TA-A---T---TATTAA-------------------------ATGGCC--A-TGA-A-AA--T---ACGCC--AAACA--T-A--ATATGA--C-TCATG--TTTTTA-T---GGA-A--TT--GG---GCAATATTTGA-TAA-C---T----AG-----A------A-G-------GTGGTTTCTGTTCTCT---TTTGTCTGTCGTCGGAATGGGGGTTGAAATTTGTCGCAAAATAAC
gi|2 : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACTCG-TATGCAATTCATTA---CATTTTATGGC-TGGGA-----GGTAATGGTATGGAAAAACT---------GTACC-TACA-TTCAATTTGTTTGTCA-GTCAC-TAGTATCCATGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA----TGGGGGGGGGGGGGGGGAGGGTC-AAAAAATTCTTCAAATCCAC------ATTATCA----TTATTGC-TCAATTACTT-CTAATTACAGCATTTATTGGT-TCATA-TTTGCC--TGCATTCTT-GATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAG-GGAGGCATCTATAAGTTT------CTGA-ATTACG-ACAACTAACCGC-ACATTAGTAT-TAGAAAGGTGAG--TTCATTTATCTG-CTTGGGAAATATAGCA-TATTTATC---TA-ATTA-AAGTAATGCCTTTG---TC-T-TTATCAACGT-T-AC---ACTTTTCAACAACATTTTACCTTGAT-AGCA---TGT-GGTGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-A-TTTAATTTGTG-CTCG-CGTCA--TGTGCTGAAA-TTTGGCTA-TGCCACT-GCACTACATTTCCAATT-GTGATTGCTTGTCTGGTAC-C--GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTG-ATATGGTGA-TTTGTGATTTTA-GCAC-CAATTGTGCGCT-CTCTT-ATTTCGTTG----AAAATTCACT--GGTGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAG-TTTGATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGT---ACTTTGGGCACCATTGTGCTTCTTTCTTTGCGAAAATTCTGGCTGCATATTCGC-CGCCA-T--A---GT-TGA-TGGCGGAGGTCAAT-TACGTTGTCCATAGT--GTTCACATTTG--AT-AATTATGTCA-TAGTATG----C-TGTT-C---GGGGCACTG----T-TTT---TTC--CA-GTTCCCT--G--C---TGAT-GGTAC-TCTAT-GCTT---AA-----TATA-TG-TGCCAA------G--T--CAT-CG-AC----GCATA---CA-AAA---TAAT-TATGT-------ATA-------------------------AA--TTATTAAATGGGCCA-TG--C--AAT---ACCCC--TAAC---T---ATA-GA--CTCTATGTTATTTTATTGG--TA--TT--GGGCAT-AT-T-T-GA-A-A-CCTAG--------A------AG--------G--TGGTA-TTTG-TCTTTTTTT--TC-TGTCCGTCGTG-G-GGT----TAT-AATCTTGTCG-ACA-AAATAA--TAGTT---CTTTACA--C-T-TGGC-T-AA-CC-TA--GTTCA-TT-TAGC--C-AA-T---AA-TTAG-T-CATTT-TAG-GTT---------TAAAG--TTA------GTTAGGA----AAA--T---TG-CTTCTCG--GGTT-CTGTC---TTCA--AGTATTGTGCATC-TGC--G-A-T-GT-CAAGA--A--CA-TTTCCTTTCTCTTTA-CAAAACTCA--CGGAG-AGCA-ACG--T-AA-AATTTTAT------------AT----------------AA----CCAC--G-CTCC-TC--CC---T-TATTTAA-GTTT---AGCTTGGATTGC-TTG--C--TT-----ATTTTATAAT-TTC-GCT-TCCTAGGTT-CCATA-TGG-CGTGT---GG------ATT----CG--TTATGGAAAG---G---TCAA-------AA--TGGTGGA--CGTTCA-C----TGTGAC--CTCTGT---CC---TTG---GTTAATATGG-T---A-C-GGT----ATATTTGC-A-TGTTTTG-----CGTCTATC--GCGGC--A-C-TG-----TTT--T--TCCA-GC-CCC-T--GGCCA-AGA-TGGTACTTCT-A-GCTT------AAGTGTT-ATTTATGCTGCC-AA---C-G--TATTCAATCGG-GCGC--AT------AC-A-AAAATA--TCATTT--T--GT-TGTA--TA-ATATT---TACTAA-------------------------ATGGCC--ATTGACA-AA--T---ACGCC--A---A--T----ATATGA--C-TT-----TTTTTA-T---GAT-A--TT--GG---CC--TATTTGA-TAA-----T----AG-----A------ATG-------GTGGTTTTT-TTCT-T---TTTGTCTGTCGTCG---TGGGGA-TGAAATTTGTCGCAA
gi|14 : ATCAAGATCACCTTTCATGCAATTCATT-TACTATTTTATGGCATGGGAAAAGGGGTA-TGATATGGGAAAACGACAAAACGTGTACCCTACAATTCAATTTTTTTGTCAAGTCGCATAGT-TCCAGATATAATT
gi|9 : AAGGGACATCTATAATTAAGTTATCCAGACCTT-AGTACATATTGTGACTGTCAG-GT-CCTAGAAGGGATAGAGTTCATTTATCTGACTT-GGGCA-ATGGTGTTT-TTATC-AATACCTTGTC--TAATT-CTTTGGA-TCATATTATCAA-ATCCAAAGTTACTTTAC--CAACATTT--CCTTGATAAGCA
gi|3 : acattcttagcggatattgctcagttactcagacgtacagctatttttgcctcgtattacttggttaattatattgcaaattcatagggtgaaaaattagtcttttgtgcgacatAAAAATT-------CACTGGGC---------TGC-AAAATT------GT-----CGCGC-CCA-TTCAA-TGTGTGGCGGATGG--GTCAATCGACATTGTCTA---TT-GCCC-CATT--GCATTAATTTTG-CA-TAGTTTG----C-TGTCTCCAGG------T-----T-TTT---TTC--CAGGTCCCCTGGGC-C-A-AGAT-GGTATTTCTAT-GCTTTAAAA--TT-CATATTGCTGCCAATTTTTTGTTT--CAT-C--AC----GCATA---CA-AAAAT-TCATGT-TGTT--G---AT--------------------------AT--ATATTAAATT-GCCA-TG-AC-AAAC---ACG-C--AAACA--TA--ATATGA--CTC-GTGTT-TTTC-TT-GCACA--TT--GGGCAT-ATTT-T-GATT-A-CCTAGTAGCC---A------AT------ACG--TGGTT-TCTGT--TTTCTTA--ATTTGTACGTTGTG-GAAGG----TGA-AAT-TTGTCGTAAACTAAT----AGG-G---TTATCCA--C-TATGGA-TAAA-CT-TG--GTT-A-TT-TAGCG-CAAATT---AACCGATTT-TATTTATAA-G-C---------TAAA---TTA-----GGTTAGA-----AAA--T---TA-C--GTCG--GGT--CTACC---TTCATGTGTGTTG-GCATC-TGC--GCA-T-GTCC-AGATCA--GT-CTTCA-TTCACTTTG-C-GAATTCA--AAGAG-AGCAGACGTAC-AA-AA--TT-T------------CT----------------GATA-CCCAC--C-CTCC-CTCCCC---TGCATTTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT---TAATTTT-TATCTTTCAGCG-TCAT-GGTC---ATA-TTGGTGTGTG--GAC-----ATTCATGC---CTA--G-GAG---GCGGCCACG-TATGGAAT-TGATGGA--CGTTC-GC----TCTGA-A----TGTA--CCCAATTA---GTT--TCTTA-TCGGA-CTGGCAT-AA--TTTGCAA-TAGTTTG----CTGTC-TCC--AGGGG--CAC-TG-----TTT--TTTTCCAGGTCCCC-T-GGGCCA-AGA-TGGTATTTCT-ATGCTTTAAATAA----TTCA--TATGCTGCC-AATTTTTG--T-TTCA--C-G-GCGC--AT------AC-A-AAA--AT-TCATTTG-TTGAT-A-----TATA---T---T-TTAA-------------------------ATTGCC--A-TGACA-AA--C---ACGCC--AAACA--TAA--ATATGA--CTTCGTG--TTTTTCTT---GCACA--TT--GG---GC-ATATTTGATTAC-C---T----AG-----T------A-GCCAATACGTGGTTTCTGTTTTCTAAATTTGTC-GCTG------TGGGAGGTGAAATTTGTCGCAAAATAAtgg
gi|12 : tgtagACTGGAC---------TGC-AAAATT------GC-----TGC-T-CCACTTTAGATTC-TGGTGAATAG--GTCA---TAGGACATCGG---TAAGGAA-CGTT-GACAC-ATTTTTG-CA-TAGATTG----C-TGTCTCCTGTGGGTACTA----C-CTT---TTC--T--------------------AT-GACAC-TCTGTCACTT---GA--TT-TTTT-TTCT---------CCGATT--GAT-CA-GC----GCAT-----A--------CAT-T-TGTTC-G---ATA-------------------------AT--T
gi|4 : TGGCAT-AATTTTG-CA-TAGATTG----C-TGTCTCCAGGGGGCACTG----T-TTT---TTC--CAGGTCCCCTAGG--CCA-AGAT-GGTATTTCTAT-GCTT---AA--TT-CATA-TGCTGCCAA----TTGTTT--CAT-TG-GC----GCATATTACA-AAAAT-TCAT-T-TGTT--G---ATAGATATTAAANGGCATACAAAAATTCAT--TTGTTGA--TGGCCA-TG-AC-AAAC---AAGCC--AAACA--TA--ATATGA--CTT-GTGTT-TTTC-TT-GGATA--TT--GGGCAT-AT-T-T-GA-TAA-CCTAT--------AGCTTGTAGCCAATAG-G--TGGTT-TCTGTTTTCTTTTG--TC-TAT-CGCTGTG-G-AGG----TGA-AAT-TTGTCGCA---AAATA
gi|8 : ctaggttatccactatggtaaactgctgttatttagcgcaaattaatatttatttataagctaaaataggttaggaaaattacggtcgggtcgaccttcttgtgttggcatcttgcgcatgtccagatcaatcttcctttcactttgcgaaattcaaagagagcagataaaaaaaaaataaaaaaaaaaaattgatacccacctctccttccctgtatatttaagtttgtagctgttgctttgcgttttaatgatatctttcagcgtcatggtcacattcagcgcctaggaggtggccacgtactggagttgatggatgttcggctggatgtacctaattagtttcctatcgggacTGGTAT-GATTTTG-CA-TAGTTTG----C-TGTC-ACCAGGGGCAATG----GGTTT---TTT--CAGGTCCCCTGGG--CCA-AAAT-G-TAA--ATAT-GATT---AA--TT-TGTA-TGCTGTCAA----TTGTTT--CAC-TG-ACGC--GTA-----CA-AAAAA-TCAT-T-TGTT--GTATATA-------------------------A---ATATTAAA-TGGCCA-TA-AC-AAAC---GCGCC--AAACA--TT--ATATGA--CTC-ATGTT-TTTC-TT-GGATT--TT--GAGCAT-AT-T-T-GA-TAA-CTTAG--------T------AGCTAATAG-G--TGGTT-TTTGTTCTCTTTTG--TCT-----GTTGTG-G-AGG----AGA-AAA-TTGTCGCA
gi|7 : cttggtttctgatcgggacTGGTAT-GATTTTG-CA-TAGTTTG----C-TGTC-ACCAGGGGCAATG----GGTTT---TTT--CAGGTCCCCTGGG--CCA-AAAT-G-TAA--ATAT-GATT---AA--TT-TGTA-TGCTGTCAA----TTGTTT--CAC-TG-ACGC--GTA-----AA-AAAAA-TCAT-T-TGTT--GT--GTA-------------------------ATAAATATTAAA-TGGCCT-AA-ACAAAAC---GCGCC--AAACA--TT--ATATGA--CTC-ATGTT-TTTC-TT-GGATT--TT--GAGCAT-AT-T-T-GA-TAA-CTTAG--------T------AGCTAATAG-G--TGGTT-TTTGTTCTCTTTTG--TCT-----GTTGTG-G-AGA----GAA-AAT-GT-TCGCAaa
gi|17 : cttggtttctgatcgggcGCAT-AATTTTG-CA-AAGATTAATTCC-TGTCTTTTGGGGATTCTGGTTTT-TTT---TTCTTCAGG-CCCCTAGGGCC-A-AGAaaa
gi|6 : taaAT-GAATTTG-CAGTAGTTAG----CGTGTCACCAGGGGGCACTG----T-TTTATTTTT--CAGGTCCCCTGGT--C-AGAGATTGGTA-TTCT-T--CTT---AA--TTATTTA-TGCTGCCAA----TTGTTTTTCAT-CG-GTGCATGCATATA-CA-AAAAT--CAT-T-TGTT--GTT-ATA-------------------------AT--T-ATTAACATGGCCA-TG-AC-TTATCGCACGCC--AAAC----ACTACATGG--CTC--TGTC-TTTTCTTGGAAT---TG--GG-CAT-A--T-TTGA-T-AACCTAG--------T------AGCCAATAG-G--TGGTT-TCTGTTCTCTTTTG--TCT-AT-CGTCGTG-G-AGG----TGA-AAT-TTGTCGCA---AAATA
gi|10 : gcatttaagtttgtagctggttgctttgctttttaattttatctttcagcgtcattgtcaatattggtgtgtgtatttatcattcagcgcctaggaggcggccaggaactggaattgatggactttcgcttgtgtaccttggaagtttctgagtcgggacggCTT---AAATTT-TATA-TGCTGCAAA----TTGTTT--CACGCGCGCG---CCAT----CACAAAATCTCAT-T-TGTTTGA---ATA-----------------------------TAATTAAAATGGCCACTGCAC-ACGC---ACGCCCAAAACACTTAACACATGGCTCTC-AAGTT-CTTGTCTGAGAAAGTTGGCGAGCATAA--TAT-GA-TAA-CCTAG--------
gi|5 : T-A--T-T-AA-T-AACCTAGTTTAGGCCA------AT------A-GGATGGTGATCTGTTTTCCTTTGCGTCT-GT-CGTCGTGCG-AAGCCTTCGATAAT-TT-TCTC--GCAAATCATGAGGCGCTATTATCCA--CTTATGGA-TAAA-CCGTG--GTT-A-TTCTAGCG-CCAA-CTTAAATTTAATTATATTTTCAGTG-TCC-------TAAAGCTTTATAAGGGGTACGGGAAACAAA--TTAATA-C---TCG--GGGTTCGATCCTTCTCA--TGTTTTGTGCATC-TGCCGGCATT-GT-C-AAAT-C--AA-TCTCCTTCCATTTGT-C-GAACTTCCAAAGAGCAGCAGACGT-TCAATAA--TTAC------------TTTGTAGAGGCGAATATAGATTACCCACTTC-CTCCTCC--CC---TGCATTTAAGGTTTGGTAGCT--GGTATCTTTGGTC--TTTTATATTTTTATCT--TTCAGCGTTCA---ATTGCAATATTGGTTGTGTGCTAGTTCATCATTCAGGCGGCCTA--G-GAGTGCGG--CCAGGAACTGGAAATTGATGGA--C--tatgcccaatagcggtggtctgcatgctgctgcgtttagtcttat
gi|3 : atttggcatcagc-AAT-TTG-CGC---TAAATAACCAAGT----TTATCCA--T-AGTGGA-T-AA-CC-CT--ATT-AGTT-TA-CGACAAA-T---ggttcggaccttgatgtacct
gi|11 : tgtagaaaaattcactgggctgcaaaattgtcgcgcccattcaatgtgtggcggatgggtcaatcgacattgtctattgccccattgcattaattttgcatagtttgctgtctccaggtttttttccaggtcccctgggccaagatggtatttctatgctttaaaattcatattgctgccaattttttgtttcatcacgcatacaaaaattcatgttgttgatatatattaaattgccatgacaaacacgcaaacataatatgactcgtgtttttcttgcacattgggcatattttgattacctagtagccaatacgtggtttctgttttcttaatttgtacgttgtggaaggtgaaAATAAT-AGGGT---TTATCCAACT-TATGGAAT-AAACC-TA--GTTTA-TT-TAGCG-CAAA-TT--AATTTATTT-TATTTTTAA-T-TAAGCCCCCCTAAAA--TTA-----GGTTAAG-----AAAAAT---TAACTAGTCG--GGTT-CAACT---TTCT---GTGTTGTGCATC-TGC--GCA-TTGT-CCAGA--ATCAATCTTCCCTTCACTTTAAC-GAATTCA--AAGAG-AGCAGACGTAC-AA-AA--TTaaccgattttatttataagctaaattaggttagaaaattacgtcgggtctaccttcatgtgtgttggcatctgcgcatgtccagatcagtcttcattcactttgcgaattcaaagagagcagacgtacaaaatttctgatacccaccctccctcccctgcatttaagtttgtagctggttgctttgcgttttaatttttatctttcagcgtcatggtcatattggtgtgtggacattcatgcctaggaggcggccacgtatggaattgatggacgttcgctctgaatgtacccaattagtttcttatcggactggcataatttgcaatagtttgctgtctccaggggcactgtttttttccaggtcccctgggccaagatggtatttctatgctttaaataattcatatgctgccaatttttgtttcacggcgcatacaaaaattcatttgttgatatatattttaaattgccatgacaaacacgccaaacataaatatgacttcgtgtttttcttgcacattgggcatatttgattacctagtagccaatacgtggtttctgttttctaaatttgtcgctgtgggaggtgaaatttgtcgcaaaataa
gi|13 : tA--GGGT----TTATCCA--C-TATGGA-T-AAACC-TG--GTT-A-TT-TAGCG-CAAA-TT--AATTTATTT-TATTTATAA-G-C---------TAAAA--TTA-----GGTTAGG-----AAAG-T---TA-C--GTCG--GGTT-CGACA---TTCT--TATGTTGTGCATC-TGC--GCA-T-GTCC-AGA--t
gi|4 : G---TTATCCA--C-TATGG--T-AA-AC-TGCTGTT-A-TT-TAGCG-CAAATT---AAT---ATT-TATTTATAA-G-C---------TAAAA---TA-----GGTTAGGA----AAA--T---TA-CG-GTCG--GGT--CGACC---TTCT--TGTGTTG-GCATCTTGC--GCA-T-GTCC-AGATCA--AT-CTTCCTTTCACTTTG-CGAAATTCA--AAGAG-AGCAGATAA-A-AA-AA--AAATAAAAAAAAAAAATT----------------GATA-CCCAC--CTCTCC-TT--CCCTGTATATTTAA-GTTT-GTAGC---TGTTGCTTTG--CGTTT---TAATGATATCT--TTCAGCG-TCAT-GG-T-CA-----------------C------ATT-CAGCGC-CTA--G-GAG---GTGGCCACGTACTGGAGT-TGATGGATGT--TCGGCTGGATGT----ACCTAA---------TTA---GTT--TCCTA-TCGGGACTGGCAT-AA-TTTTGC-A-TAGATTG----CTGTC--TCCAGGGGG--CAC-TG-----TTT--TT-TCCAGGTCCCC-T-AGGCCA-AGA-TGGTATTTCT-ATGCTT------AAT--TC-A--TATGCTGCC-AA---TTG--T-TTC-ATT-G-GCGC--ATATT---AC-A-AAA--AT-TCATTTG-------T-----TG-A---TAGATATTAAANGGCATACAAAAATTCATTTGTTGATGGCC--A-TGACA-AA--C---AAGCC--AAACA--T-A--ATATGA--C-TTGTG--TTTTTCTT---GGATA--TT--GG---GC-ATATTTGA-TAA-CCTAT----AGCTTGTAGCCAATA-G-------GTGGTTTCTGTTTTCT---TTTGTCTATCGCTG---TGGAGG-TGAAATTTGTCGCAAAATAt
gi|19 : ctagA-CC-TG--ATT-A-TT-AAGCG-CAAATT---AATTTATTT-CATCTATAA-G-
gi|16 : CG-CAAA-TT--AAT--ATTT-TATTTATAA-G-C---------TAAAA--TTA-----AGTTAGG-----AAAATT---TG-C--GACGGAGGTT-CGACC---TTCA--TGTGTTGTGCATC-TGC--Gc
gi|18 : TTGTGCATC-TGC--GCA-T-GT-CAAGATCA--AT-TTTCCTTTCACTTTG-C-GAATTC----GGAG-AGCAGACGT-T-AA-AA--
gi|6 : gGCATTTAA-GTTT-GTAGCT--GGTTGCTTTG--CTTTT---TAATTTTATCT--TTCAGCG-TCAT-TG-T-CAATA-TTGGTGTGTG--TATTTATCATT-CAGCGC-CTA--G-GAG---GCGGCCAGGAACTGGAAT-TGATGGA--C--T--------TTCG-----CTTGTGTACC---TTGGAAGTT--TCTGAGTCGGG-ACGGA-TGAA--TTTGC-AGTAGTTAG---CGTGTC-ACCA-GGGGG--CAC-TG-----TTTTATTTTTCAGGT-CCC-C-TGGTCAGAGATTGGTATTCTTCTTAATT------A----TT----TATGCTGCC-AA---TTGTTT-TTC-ATC-G-GTGC--ATGCATATAC-A-AAA--A--TCATTTGTT--GT-TA----TA-A---T---TATTAAC------------------------ATGGCC--A-TGA-CTTA--TCGCACGCC--AAACA--C-T--ACATGG--C-TC-TGTCTTTTCT-T---GGA-A--TT--GG---GC-ATATTTGA-TAACC---T----AGT----AGCCAATA-G-------GTGGTTTCTGTTCTCT---TTTGTCTATCGTCG---TGGAGG-TGAAATTTGTCGCAAAATAagttt
gi|8 : C---TTG---GTT--TCTGA-TCGGGACTGGTAT-GATTTT-GC-A-TAGTTTG----CTGTC-ACC--AGGGG--C-AATG-----GGT--TTTTTCAGGT-CCCCT-GGGCCA-AAA-TG-TAAAT---ATGATT------AAT--TT-G--TATGCTGTC-AA---TTG--T-TTCACT--G-ACGC--GT------AC-A-AAA--AA-TCATTTG-TT-GTATA----TA-A---A---TATTAA-------------------------ATGGCC--A-TAACA-AA--C---GCGCC--AAACA--T-T--ATATGA--C-TCATG--TTTTTC-T---TGG-A--TTTTGA---GCA-TATTTGA-TAA-C---TTAGTAGCTA--AT-----A-G-------GTGGTTTTTGTTCTCT---TTTGTCTGTTGT-GGA--GGA----GAAAATTGTCGCAAA
gi|7 : C---TTG---GTT--TCTGA-TCGGG-CTGGTAT-GATTTT-GC-A-TAGTTTG----CTGTC-ACC--AGGGG--C-AATG-----GGT--TTTTTCAGGT-CCCCT-GGGCCA-AAA-TG-TAAAT---ATGATT------AAT--TT-G--TATGCTGTC-AA---TTG--T-TTCACT--G-ACGCGTA-------AA-A-AAA--A--TCATTTG-TT-GT-G-----TA-A---TAAATATTAA-------------------------ATGGCCTAA-ACA-A-AA--C---GCGCC--AAACA--T-T--ATATGA--C-TCATG--TTTTTC-T---TGG-A--TTTTGA---GCA-TATTTGA-TAA-C---TTAGTAGCTA--AT-----A-G-------GTGGTTTTTGTTCTCT---TTTGTCTGTTGT-GGA--GAG----AAAATGT-TCGCAAAA
gi|17 : -T-AATTTT-GC-A-AAGATTAATTCCTGTC-TTT--TGGGGATT-C-TGGTTTTTTT--TTCTTCAGGC-CCC-TAGGGCCA-AGA-
gi|10 : taagca----TT-A--TATGCTG-CAAA---TTG--T-TTCACGC-GCGCGC--C-------ATCACAAA--ATCTCATTTG-T---T-TGAATATA-A---T---TA--AA-------------------------ATGGCC--ACTGC-A-CACGC---ACGCCCAAAACACTT-AACACATGGCTC-TCAAG--TTCTTG-TCTGAGA-AAGTT--GGCGAGCATAATATGA-TAACC---T----AG-----
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AACATGGGAGGGGGGGGGGGGGGGGCTTGTCACGATCATTTCTCTGTTGCCTATTCATTATATGTATTTCATTATTTCAGCATCCATTAGTATCAAGTATTTGACTTGAAAATTCCTACG
Unaligned ( gi|20 ): AATAGTTTTGAAATAAATATTGTGCAAGTGTAAATAATTTA
Unaligned ( gi|21 ): ATGGTCATATTGGTGTGTGGACATTCA
Alignments
lowQualScore : 333 2 2 1 2222 22 22 1 11 11 11 777777777 2 1 1 2 2 2 2222 2222222 1 1 333333 2222 1 1 2 111 2222222 1 2222 111 1 11 1 11 222 22222 1 1 11 444444 11 22 666666666666 111 2 44 111 44444 111 22222 55555555555 33 222 2 1 2 1 1 1 2 1 1 2 2 2 2 22 2 2 2 1 2 3333 1 11 1 222 1 222 2 2 2 2 2 2 1 5555555 22 1 11 2 2222 1 22 2 2 22222 11 222 3333333 444444444 1 4444444444444 111 1 2 11 11 1 11111 333333 1 1 1111 11 22222 11 111 11 1 111 111 1111111 333 11 222222 11 2 1 11 111 3333333 1 3333 11 11 1 111 1 4444444444444444 22222222 11 1 1 1 2222222 1 333333 22222 2 1 22222 1111 11 222222222222222222 111 1111 88888888888888888888888888888888 1111 2222 1111 11 6666666666666666666 55555555555555555 1 111 111 1 11 1 11 11 1 1 11 11111 111 2222 2222222222 11 2222 1111111 2222222222222222 33333333333333 1 1111 22 888888888888888888888 111 111
lowQualScore : 555 0 0 5 1111 4 3 3 77 3 77 5 0 55 6 99 7 7 11 7 777777777 6 7 1 7 7 3 11 5 5 0 0 0 8888 9999999 3 3 888888 7 8888 0 2 0 444 0 1 3 444 6 7777777 0 2 0000 0 000 0 3 11 2 7 7 7 66 333 3 2 77777 5 5 88 7 1 777777 1 33 11 7 22 555 0 111111111111 999 7 7 6 1 3 0 0 33 999 77 44444 444 6 55555 88888888888 1 7 00 7 333 0 5 3 3 0 3 2 5 4 5 5 0 5 5 0 0 3 0 2 0 3 77 0 2 0 0 5 3 0 2 7777 4 3 5 88 5 111 4 5 111 0 66 0 0 0 0 0 5 1111111 77 5 88 0 3 8888 2 5 77 0 0 66 66666 88 3 111 1 1111111 000000000 0 7777777777777 444 0 33 0 11 6 44 0 55555 2 1 222222 22 0 2 5 3 8 8 1 7777 0 44 22 00000 11 55 66 444 66 0 444 111 8 3 8888888 0 333 8 88 44 8 0 555555 11 3 0 0 33 3 666 7777777 0 1111 33 00 9 1 777 0 88 0 0 3333333333333333 8 33333333 3 1 11 11 11 6 0 0 2222222 0 2 333333 88 00000 77 5 77 0 5 66 0 5 66 55 2 55 66 888 55555 999 0000 66 11 666666666666666666 66 5 88 5 222 66 1 4 66 5 5 2 5 0 33 0 888 5 5 77 1 5 7777 5 88888888888888888888888888888888 88 4444 3333 99 6 777 99 1 0000 6 6 6 6 6 66 9 6 5555555555555555555 2 6 6 3 1 999 6 3 99 66666666666666666 7 777 000 5 5 1 4 5 1 66 1 5 5 5 55 33 77 1 1 3 5 5 11 5 1 44444 555 5 77 1 0 000 5 77 3333 4444444444 11 5 4444 5 8888888 5 5 1 5 7777777777777777 33333333333333 66 5 99 1 8888 77 111111111111111111111 000 8 000 5 5
lowQualScore : ... . . . .... . . . .. . .. . . .. . .. . . .. . ......... . . . . . . .. . . . . . .... ....... . . ...... . .... . . . ... . . . ... . ....... . . .... . ... . . .. . . . . .. ... . . ..... . . .. . . ...... . .. .. . .. ... . ............ ... . . . . . . . .. ... .. ..... ... . ..... ........... . . .. . ... . . . . . . . . . . . . . . . . . . . . . .. . . . . . . . . .... . . . .. . ... . . ... . .. . . . . . . ....... .. . .. . . .... . . .. . . .. ..... .. . ... . ....... ......... . ............. ... . .. . .. . .. . ..... . . ...... .. . . . . . . . .... . .. .. ..... .. .. .. ... .. . ... ... . . ....... . ... . .. .. . . ...... .. . . . .. . ... ....... . .... .. .. . . ... . .. . . ................ . ........ . . .. .. .. . . . ....... . . ...... .. ..... .. . .. . . .. . . .. .. . .. .. ... ..... ... .... .. .. .................. .. . .. . ... .. . . .. . . . . . .. . ... . . .. . . .... . ................................ .. .... .... .. . ... .. . .... . . . . . .. . . ................... . . . . . ... . . .. ................. . ... ... . . . . . . .. . . . . .. .. .. . . . . . .. . . ..... ... . .. . . ... . .. .... .......... .. . .... . ....... . . . . ................ .............. .. . .. . .... .. ..................... ... . ... . .
lowQualScore : 000 0 0 5 0000 0 0 0 55 0 55 5 7 77 7 77 3 3 33 3 333333333 7 3 0 3 3 7 77 5 5 0 0 0 3333 0000000 3 3 333333 3 3333 0 5 0 888 0 2 2 000 5 8888888 0 5 8888 2 222 0 2 88 3 3 3 7 33 333 0 5 00000 5 5 55 3 0 333333 0 00 33 3 00 333 7 333333333333 000 3 3 7 0 7 7 7 00 777 77 00000 333 7 33333 33333333333 0 3 77 3 333 0 5 0 0 0 0 5 0 0 0 5 0 5 0 0 0 0 0 5 0 0 55 0 5 0 0 0 0 0 5 5555 0 0 5 00 0 000 0 5 000 0 55 0 0 0 0 0 0 5555555 55 0 00 0 0 5555 5 5 55 0 0 00 55555 55 0 555 0 0000000 000000000 0 8888888888888 000 0 55 0 22 5 88 0 00000 0 0 222222 00 0 0 5 2 0 0 4 0000 8 66 44 22222 00 88 00 444 55 0 000 888 0 8 2222222 8 000 0 88 44 0 8 888888 66 2 0 0 22 2 222 0000000 0 2222 88 22 0 2 555 0 88 8 8 4444444444444444 0 00000000 8 4 88 00 66 0 0 0 8888888 0 5 000000 88 00000 99 7 11 0 0 99 0 0 11 44 0 99 11 000 00000 666 6666 99 99 888888888888888888 99 0 22 0 888 11 9 4 11 0 0 5 0 4 11 1 333 7 7 99 4 7 9999 7 88888888888888888888888888888888 88 0000 4444 22 7 555 22 0 0000 7 7 7 7 7 55 8 7 7777777777777777777 5 7 7 7 0 555 7 2 22 77777777777777777 3 555 000 7 7 4 4 7 4 99 4 7 7 7 44 11 99 4 4 0 7 7 66 7 0 33333 999 7 99 7 1 000 7 99 7777 4444444444 11 7 4444 7 4444444 7 7 7 7 1111111111111111 66666666666666 77 7 77 4 1111 44 111111111111111111111 000 9 000 7 7
consensus : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCT-TCATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------TGTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA----TGGGGGGGGGGGGGGGGGGG----GTC-AAAA-AATTCTTCAAATCCAC------GTTATCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATGGCAAAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-G---TCCTGACATTACGTACAAATCGNCGC-GCCTT-GT-CCTAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCGT--TTTATCAA-TACATTG--AGTAATGCCTTTGGAT-CAT-TTATCAA-GTT-AA----ACTTTNCAACAACATTT--CCTTGATAAGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAAAAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCAAT-T-ACGTCGTCCA---T--GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAAT-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTCT---GTGT--TTTTC-TTGGGATATTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAACC-TG--GTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGT--TGTGCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAG-AGCAGACGT-T-AA-AATTAT------------TT----------------GAT-ACCCAC--C-CTCC-CT-CCCTGCAT--TTAAG-TTT-G-TAGCT--GGTTGCTTTG--CGTTT-TAATTTT-AT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG---A----TGTACC---TTGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGCA-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCTT-----AA-T-T-TA--TATGCTGCCAATT---GT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TATA-A---T---TATTAA-ATGGCCA-TGAC-AAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TTGGGC-ATATTTGATAACCTAG------TAGCCAATA--GGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
Reference ( family-123 ) : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACCCGTCATGCAATTCATTATACCATTTTATGGCATGGGAAAAGGGGTAATGGTATGGGAAAACNACAAAACGTGTACCCTACAATTCAATTTNTTTGTCAAGTCGCATAGTATCCANGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA----TGGGGGGGGGGGGGGGGAGG----GTC-AAAA-AATTCTTCAAATCCAC------ATTATCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAGAGGGGGCATCTATAANTNNGTTATCCNGACNTTANGTACANNTNGCCGCTGCNNNAGTACCTAGAAGGGNNAGAGTTCATTTATCTGACTTGGGGNATATGGCGTTNTTTATCAA-TACNTTGTNAGTAATNCCTTTGGAT-CATATTATCAACGTCCAANGTTACTTTNCAACAACATTTTACCTTGATAAGCA---TGTGG-TGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-ATTT-AATTTGTG-CTCGC-GTCAT--GTGCTGAAA-TTTGGCTA-TGCCACTG-CACTACATTTCCAATTG-TGATTGCTTGTCTGGTAC--C-GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTGA-TATGGTGATTT-GTGATTTTAG-CAC-CAATTGTGCGCTC-TCTT-ATTTCGTTGAAAA----TTCACTGG--TGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAGTTT-GATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATT---GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGACGG-GTCAAT-T-ACGTCGTCNA---T--GNNC-CGTTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCCGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTANTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAAT-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC----GTGT--TTTTC-TTGGGATATTGG---GCAT-ATTT-GATAACCTAGN---A-G-CCAATA--GG-TGGTT-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GA-GGT----GA-AAT-TTGTCGCA-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAA-CC-TG--GTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAA--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGT--TGTGCATCT-GC--GCA-T-GTCCAG-ATCAANCTTCCTTTCACTTT-G-C-GAA-TT--CAAAGAG-AGCAGACGT-T-AA-AATTAT------------TT----------------GAT-ACCCAC--C-CTCC-C--CCCTGCAT--TTAAG-TTT-G-TAGCT--GGTTGCTTTG--CGTTT-TAATTTT-AT-CTTTCAGCG-TCAT-GGTT-CAATATNGG-TGTGTG--GGTT-ATCATTCCGGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TNTG---ACCT-TGTGCC---TTGG---TTTCTGA-T-CGGG-CTGGTAT-AATTTTTGCA-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGNTT-----AA-T-T-TA--TATGCTGCCAATT---GT-TT--CANTC-GGCGCA---T------ACAAAAAT-TCA-TTTGTTGT-TGTA-A---T---TATTAA-ATGGCCA-TGAC-AAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TTGGGCAATATTTGATAAC----------TAGCTA--A--GGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
gi|1 : GGCCACTCTAGTCCATTAATTTTCACAAAGCTTAAAAATTTAATTCTTGTGGGTTTCA-TTAATATCTTTTGTCTATTTTATTTAGATTCCATCATCCATGGGCTCAATCAGTTTGCACTTGCA-ATACAATCAAGATCACCT-TCATGCAATTCATTGTACCATTTT---GCATGGGAAGAGGGGTAATGGTATGGGAAAACT--------TGTACCCTACAATTCAATTTGTGTTTCAAGTCGCATAGT-TCCAGATATAATTGTT-ATTCA-TTGTGGTGGAAACAACATTGGTCAATCAAGCAACACACTTGGGGGGGGGCGGGGGG--G----CTCCAAAA-AATTCTTCAAATCCACTTTACAGTTATTAATAGTTAT-TGCTTCAAC-ACTTCCTGAT-ACAGCTATTATTGGT-CCCA--TATTTTGCCGTT-GCATT-CTTGGATAAATTCATTTG-CAAG-TTCAGAAGACCTGTGAAAAAATGCTGGCTCCTAG-----ATT-AACAGTTATTAAA-TC--TTTCAGGGAGGGGGCATCTATAATTATG----CCTGATATT-CGTACAAATCAACAC-GCCTT-GT--TTAGAAGGGTTGG--TTCATTTATCTGACTTGGGGAA-ATAGCATA--TTATCAAATACATT---AATAATGC-TTTGGATTCAT-TCATTAA-GTTAAA----ACTTTCCAACAACATTT--CCTTGATCAGCAATCTGTGGGTGCTTTTTGTTG-CCAACTTGGTGGCACTTGGTTAGTAAGC-AATTTA-TTGCAT-CATTGTTAACCATTTACATGCACATGGT-CTTAA-TTCATATATTTTAATTTAGGTCTGGCCGGCATTTGTGCTGAAAGTTTGGGCAGTGCCATTGGCACTA-ATTTTCCATTGGTGATTGCTCTTTTGGTACACCAGTTGTAAGTTTGAT-TT--GCAC-AGTT---GTGCTTTCTATTTAC-AT---TGTGAATTTGAATAATGTAATTTTGTGACTTTAGGCACGCAATTGTGCGTTCCTCTTCATTT-ATTGAAAAAAAAT--ACTGGGGTGCAAAATG-CAG-ATTTACTATTGTGATT--GCTTTGTCTGGT-ACCAGTAGTTTTGATTTAGACATTGTGCTCTTCCT-----ACTTC--ATTTGGTAAAAATT-------CACTGGGC---------TGC-AAAATTT--GC--------CGC-C-CCA-TTCAG-TGT-TGG-GGATGGAGTCAATCT-ACGTTGTCCA---T--GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTC-CCGGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGC-AAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGTCAGCT----GTTTCATCG-GCG-G-CAT--CAAAAATTCAT-TTGTT---G--ATAATTTATTAAATTGGCCA-TG-ACAAATACGCC--AAAC---TA--ATAT-GACTC----ATGT--TTTTTATTGGGATATGGG---GCAT-ATT--GATA-CCTAGA---A-G---------AG-TGGTT-T-----CTGTTCTCTCTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCATAC-AAATAA--AGGTG---TTATCCA--CT-ATGGA-TAA-CC-TA--GTT-ATT-TAGCGCAAAT---AATTTAGTT-CA--TTTA--TAGG-----TTAAAG--TTA----GGTTT--GG--AAA--T-------T-GC--G-TCG--GG-TTGCGG-TCTTCA--AGTAT--TGTGCATCT-GC--GCA-T-GT-CAG-A--AAACTTCCTTTCTCTTT-A-C-AAA-CT--CCAAGAG-AGCAGACGT-T-AA-AATTAT------------TT----------------GAT--CCCAC--C-CTCC-C--TCCTGTAT--TTAAG-TTTGG-GAGC---GGTTGCTTTG--C--TT-TAATTTT-AT-A-TTCAGCG-TCAT-GGTT-CAATATGGA-TGTGTG--GG---ATTA----GGC-G-CTAGAGAG-GT--TCAAG-ACTGG-AA-TGATGGAC---TCAG-CATGTGGCAGCCT-TGT-CC---TTGG---TTTATGA-T-TGAG-CTGGC-T-AATTTTTGCA-TAGTTTGTC-TGTC-ATC-GGGGGC-CTGTTTT--TATCCAGGT-CCC-TGGGCCA-AGAT-GGTACTTCTCATGCTT-----A----T-TA--TATGCTG-CAGCT---GT-TT--CAATC-GGCGCA----------ATAAAAA--TCA-TTTG-TGT-T-TA-A---T---TATTAA-ATGGCCA-TGA--AAA----TAC---------GCCA--------------AACAT-AATATGAC-TC-ATGTTTTTA-TGGA-A--TTGGGCAATATTTGATAAC----------TAG--A--A--GGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCGGAATGGG-GGTTGAAATTTGTCGCAAAATAA
gi|10 : CTT---AAATTTTATAT-GCTGCAAATT----GTTTCA-CGCGCGCGCCATCACAAAATCTCAT-TTGTTTGAA-TATAA-TTA--AAAT-GGCCACTGCACACGCACGCCCAAAACACTTAACACAT-GGCTCTCAAGTTC--TTGTC-TGAGAAAGTTGGCGAGCATAATAT-GATAACCTAGT---ATGCCCAATAGCGG-TGGTC-TGCATGCTGCTGCGTTTAG--TCTTAT-c
gi|11 : AATAAT-AGGGT---TTATCCAACTT-ATGGAATAAACC-TA--GTTTATT-TAGCGCAAATT--AATTTATTT-TATTTTTAATTAAGCCCCCCTAAAA--TTA----GGTTA--AGAAAAA--T-------TAACTAG-TCG--GG-TT-CAA-CTTTC---TGTGT--TGTGCATCT-GC--GCATT-GTCCAGAATCAATCTTCCCTTCACTTTAA-C-GAA-TT--CAAAGAG-AGCAGACGTAC-AA-AATT
gi|12 : tACTGGAC---------TGC-AAAATT---GC--------TGC-T-CCACTTTAGATTC-TGGTGAATAG-GTCA---T-AGGACATCGG---TAAGGAA-CGTT-GACAC-ATTTTTG-CATAGATTG----CTGTCTCCTGTGGGTACTA----CCTTTTC--T-----------------ATGACAC-TCTGTCACTT---GA--TTTTTTT-TCT-CCGATT----G----ATCA---GCG-CAT-A--------CAT-TTGTT---C-GATAATTt
gi|13 : GGT----TTATCCA--CT-ATGGA-TAAACC-TG--GTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAA--TTA----GGTTA--GG--AAAG-T-------T-AC--G-TCG--GG-TT-CGA-CATTCT--TATGT--TGTGCATCT-GC--GCA-T-GTCCAG-AT
gi|14 : agATCAAGATCACCTTTCATGCAATTCATT-TACTATTTTATGGCATGGGAAAAGGGGTA-TGATATGGGAAAACGACAAAACGTGTACCCTACAATTCAATTTTTTTGTCAAGTCGCATAGT-TCCAGATATAATT
gi|15 : AACA----TGGGAGGGGGGGGGGGGGGGGCTTGTC-ACGATCATTTCTCTGTTGCCT------AT--TCA----TTATATG-------TATTTCATTATTTCAGCATCCATTAGTATC-AAGTATTT-G--------A---CTTG-A-AAATTCCTACG
gi|16 : CGCAAATT--AAT--ATTT-TA--TTTA--TAAG-----CTAAAA--TTA----AGTTA--GG--AAAATT-------T-GC--G-ACGGAGG-TT-CGA-CCTTCA--TGTGT--TGTGCATCT-GC--G
gi|17 : GCAT-AATTTTG-CAAAGATTAATTCCTGTCTTTTGGGGATTCTGGTTTTTTTTTCTTCAGGCCCCTAGGGCCAAGA
gi|18 : taaGT--TGTGCATCT-GC--GCA-T-GTCAAG-ATCAATTTTCCTTTCACTTT-G-C-GAA-TT--C--GGAG-AGCAGACGT-T-AA-AA
gi|19 : A-CC-TG--ATT-ATT-AAGCGCAAATT--AATTTATTT-CA--TCTA--TAAG-----Cagttt
gi|2 : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACTCGT-ATGCAATTCATTA---CATTTTATGGC-TGGGA-----GGTAATGGTATGGAAAAAC---------TGTACC-TACA-TTCAATTTGTTTGTCA-GTCAC-TAGTATCCATGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA----TGGGGGGGGGGGGGGGGAGG----GTC-AAAA-AATTCTTCAAATCCAC------ATTATCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAG-GGAGGCATCTATAAGT------TTCTGA-ATTACG-ACAACTAACCGC-ACATTAGTAT-TAGAAAGGT--GAGTTCATTTATCTG-CTTGGGAAATATAGCAT-ATTTATC---TA-ATTA-AAGTAATGCCTTTG--T-C-T-TTATCAACGTT--AC---ACTTTTCAACAACATTTTACCTTGATA-GCA---TGTGG-TGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-ATTT-AATTTGTG-CTCGC-GTCAT--GTGCTGAAA-TTTGGCTA-TGCCACTG-CACTACATTTCCAATTG-TGATTGCTTGTCTGGTAC--C-GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTGA-TATGGTGATTT-GTGATTTTAG-CAC-CAATTGTGCGCTC-TCTT-ATTTCGTTGAAAA----TTCACTGG--TGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAGTTT-GATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGT---ACTTTGGGCACCATTGTGCTTCTTTCTTTGCGAAAATTCTGGCTGCATATTCGC-CGCCA-T--AGTTGA-TGGCGGA--G-GTCAAT-T-ACGTTGTCCATAGT--GTTCACATTTG--AT-AATTATGTCATAGTATG----CTGT-TC---GGGGCACTG----TTTTTTC--CA-GTTCCCT--GCT--GATGGTAC-TCTAT-GCTT---AA----TATAT-G-TGCCAA------G--TCATCG---ACG-CAT-ACAAAA--TAAT-T--AT---G-TATAAATTATTAAATGGGCCA-TG--C-AATACCCC--TAAC--------TATAGACTCT---ATGTTATTTTA-TTGG--TATTGG---GCAT-ATTT-GA-AACCTAGA------------A--GG-TGGTA-T-----TTG-TCTTTTTTT--TC-TGTCCGTCGTG-GG-GTT----AT-AATCTTGTCG---ACAAAATAAT-AGTTC---TT-TACA--CT--TGGC-TAA-CC-TA--GTTCATT-TAGC-CAA--T--AATTAG--T-CA--TTT---TAGGT----TTAAAG--TTA-----GTTA--GGA-AAA--T-------T-GCTTC-TCG--GG-TT-CTG-TCTTCA--AGTAT--TGTGCATCT-GC--G-A-T-GTCAAG-AACA--TTTCCTTTCTCTTT-A-CAAAA-CT--CACGGAG-AGCA-ACG--T-AA-AATT-T------------TA----------------TAT-AACCAC--G-CTCC-T--CCCT-TAT--TTAAG-TT----TAGCTTGGATTGCTT-----GCTT---ATTTT-ATAATTTC-GCT-TCCTAGGTT-CCATAT-GG-CGTGTG--GATTCGTTAT------------G-GAA-A-GGTCAAAA---------TGGTGGAC-GTTC-A-C-TGTG---ACCTCTGT-CC---TTGG---T---TAA-TATGGT-ACGGTAT-A---TTTGCA-TGTTTTG-C--GTCTATC--GCGGCACTG--TT--TTTCCA-GC-CCC-T-GGCCA-AGAT-GGTACTTCT-A-GCTT-----AAGTGT-TATTTATGCTGCCAA-C---GTATT--CAATCGGGCGCA---T------ACAAAAATATCATTTTGTTG--TATA-ATATT---TACTAA-ATGGCCATTGAC-AAA----TAC---------GCCA--------------A-----TATATGAC-TT----TTTTTA-TGAT-A--TTGGCC--TATTTGATAA-----------TAG--A--AT-GGTGGTTTTT-TTCT-T---TTTGTCTGTCGTCG---TGGG-GA-TGAAATTTGTCGCAA
gi|3 : CACTGGGC---------TGC-AAAATT---GT--------CGCGC-CCA-TTCAA-TGTGTGGCGGATGG-GTCAAT-CGACATTGTCTA---TT-GCCC-CATT--GCATTAATTTTG-CATAGTTTG----CTGTCTCCAGG------T-----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTATTTCTAT-GCTTTAAAA--TTCATATTGCTGCCAATTTTTTGTTTCATCA----CG-CAT-ACAAAAATTCATGTTGTT---GATATA---TATTAAAT-TGCCA-TG-ACAAACACGC---AAACA--TA--ATAT-GACTC----GTGT--TTTTC-TTGC-ACATTGG---GCAT-ATTTTGATTACCTAGT---A-G-CCAATA--CG-TGGTT-T-----CTGTTTTCTT--A--ATTTGTACGTTGTG-GAAGGT----GA-AAT-TTGTCGTA-A---ACTAAT-AGG-G---TTATCCA--CT-ATGGA-TAAACT-TG--GTT-ATT-TAGCGCAAATT--AACCGATTT-TA--TTTA--TAAG-----CTAAA---TTA----GGTTA--GA--AAA--T-------T-AC--G-TCG--GG-T--CTA-CCTTCA--TGTGTGTTG-GCATCT-GC--GCA-T-GTCCAG-ATCAGTCTTCATT-CACTTT-G-C-GAA-TT--CAAAGAG-AGCAGACGTAC-AA-AATT-T------------CT----------------GAT-ACCCAC--C-CTCC-CTCCCCTGCAT--TTAAG-TTT-G-TAGCT--GGTTGCTTTG--CGTTT-TAATTTTTAT-CTTTCAGCG-TCAT-GGTC---ATATTGG-TGTGTG--GA-----CATTC--AT-GCCTAG-GAG-GCGGCCACGTA-TGG-AATTGATGGAC-GTTCG--C-TCTG---AA---TGTACCCAATTAG---TTTCTTA-T-CGGA-CTGGCAT-AATTT--GCAATAGTTTG-C-TGTC-TCC-AGGGGCACTGTTTT--TTTCCAGGT-CCCCTGGGCCA-AGAT-GGTATTTCT-ATGCTTTAAATAA-T-T-CA--TATGCTGCCAATTTTTGT-TT--CA--C-GGCGCA---T------ACAAAAAT-TCA-TTTGTTGA-TATATA---T---T-TTAA-ATTGCCA-TGAC-AAA----CAC---------GCCA--------------AACATAAATATGACTTC-GTGTTTTTCTTGCACA--TTGGGC-ATATTTGATTACCTAG------TAGCCAATA--CGTGGTTTCTGTTTTCTAAATT----TGTCGCTG---TGGGAGG-TGAAATTTGTCGCAAAATAA
gi|4 : tgtagaaaaattG---TTATCCA--CT-ATGG--TAA-AC-TGCTGTT-ATT-TAGCGCAAATT--AAT--ATTT--A--TTTA--TAAG-----CTAAAA--T-A----GGTTA--GG--AAAA-T-------T-AC--GGTCG--GG-T--CGA-CCTTCT--TGTGT--TG-GCATCTTGC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAAATT--CAAAGAG-AGCAGATAA-A-AA-AAAAATAAAAAAAAAAAATT----------------GAT-ACCCAC--CTCTCC-TT-CCCTGTATATTTAAG-TTT-G-TAGCT--G-TTGCTTTG--CGTTT-TAATGAT-AT-CTTTCAGCG-TCAT-GGT--CA-----------------------CATTC-AGC-GCCTAG-GAG-GTGGCCACGTACTGG-AGTTGATGGAT-GTTCGG-C-TG-G---A----TGTACCTAATTAG---TTTCCTA-T-CGGGACTGGCAT-AA-TTTTGCA-TAGATTG-C-TGTC-TCCAGGGGGCACTG-TTT--TTTCCAGGTCCCC-TAGGCCA-AGAT-GGTATTTCT-ATGCTT-----AA-T-T-CA--TATGCTGCCAATT---GT-TT--CATT--GGCGCATATT------ACAAAAAT-TCA-TTTGTTG---ATA-G---A---TATTAA-ANGG-CA-T-AC-AAAAATTCATTTGTTGATGGCCATGACAAACAAGCCAAACAT-AATATGAC-TT-GTGTTTTTCTTGGATA--TTGGGC-ATATTTGATAACCTATAGCTTGTAGCCAATA--GGTGGTTTCTGTTTTCT---TTTGTCTATCGCTG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|5 : ctagTT-AATAACCTAGTTTAG-G-CCAATA--GGATGGTGAT-----CTGTTTTCCTTTGCGTCT-GT-CGTCGTGCGA-AGCCTTCGATAAT-TT-TCTCG--C-AAATCATGAGGCGCTATTATCCA--CTTATGGA-TAAACCGTG--GTT-ATTCTAGCGCCAACTTAAATTTAATTATA--TTT---TCAGTGTC-CTAAAGCTTTATAAGGGGTACGGG--AAA--CAAATTAAT-AC----TCG--GGGTT-CGATCCTTCTCATGTTT--TGTGCATCT-GCCGGCA-TTGTC-AA-ATCAATCT-CCTTCCA-TTT-GTC-GAA-CTTCCAAAGAGCAGCAGACGT-TCAATAATTAC------------TTTGTAGAGGCGAATATAGATTACCCACTTC-CTCCTC--CCCTGCAT--TTAAGGTTT-GGTAGCT--GGTATCTTTGGTCTTTTATATTTTT-AT-CTTTCAGCGTTCA---ATTGCAATATTGGTTGTGTGCTAGTTCATCATTCAGGCGGCCTAG-GAGTGCGGCCAGGAACTGGAAATTGATGGACGGTTCGGAC-CTTG---A----TGTACC---T
gi|6 : atttggcatcagctaGCAT--TTAAG-TTT-G-TAGCT--GGTTGCTTTG--CTTTT-TAATTTT-AT-CTTTCAGCG-TCAT-TGT--CAATATTGG-TGTGTG--TATTTATCATTC-AGC-GCCTAG-GAG-GCGGCCAGGAACTGG-AATTGATGGAC-TTTCG--C-T-TG--------TGTACC---TTGGAAGTTTCTGAGT-CGGG-ACGG-ATGAATTT--GCAGTAGTTAG-CGTGTC-ACCAGGGGGCACTGTTTTATTTTTCAGGT-CCC-CTGGTCAGAGATTGGTA-TTCT--T-CTT-----AA-T-TATT--TATGCTGCCAATT---GT-TTTTCA-TC-GGTGCA---TGCATATACAAAAAT--CA-TTTGTTGT-TATA-A---T---TATTAACATGGCCA-TGAC-TTATCG-CAC---------GCCA--------------AACAC-TACATGGC-TCTGTCTTTTCT-TGGA-A--TTGGGCA-TATTTGATAACCTAG------TAGCCA--ATAGGTGGTTTCTGTTCTCT---TTTGTCTATCGTCG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|7 : C---TTGG---TTTCTGA-T-CGGG-CTGGTAT-GATTTT-GCA-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGTCCCC-TGGGCCA-AAAT--GTAA--AT-ATGATT-----AA-T-T-TG--TATGCTGTCAATT---GT-TT--CACT--GACGCG---T------AAAAAAAA-TCA-TTTGTTG--TGTA-A---TAAATATTAA-ATGGCCT-AAACAAAA----CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-ATTTTGAGC-ATATTTGATAACTTAG------TAGCTAATA--GGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GA-GAAAATGT-TCGCAAAA
gi|8 : C---TTGG---TTTCTGA-T-CGGGACTGGTAT-GATTTT-GCA-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGATT-----AA-T-T-TG--TATGCTGTCAATT---GT-TT--CACT--GACGCG---T------ACAAAAAA-TCA-TTTGTTGTATATA-A---A---TATTAA-ATGGCCA-TAAC-AAA----CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-ATTTTGAGC-ATATTTGATAACTTAG------TAGCTAATA--GGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GG-AGAAAATTGTCGCAAA
gi|9 : TAT-TGCT-CAGTTACTCA-GACGTACAGC---TATT------------TTT-GCC--TCGTATTACTTG-GTTAATTA-TATTGC-AAATTCATAGGG--TG---AAAAAT
gi|9 : acattcttagcggaAAGGGACATCTATAATTAAGTTATCCAGACCTTA-GTACATATTGTGACTGTCAG-GT-CCTAGAAGGGATAGAGTTCATTTATCTGACTT-GGGCA-ATGGTGTT-TTTATCAA-TACCTTGTC--TAATT-CTTTGGAT-CATATTATCAA-ATCCAAAGTTACTTTAC--CAACATTT--CCTTGATAAGCA---TGtagtcttttgtgcgacataagggacatctataattaagttatccagaccttagtacatattgtgactgtcaggtcctagaagggatagagttcatttatctgacttgggcaatggtgtttttatcaataccttgtctaattctttggatcatattatcaaatccaaagttactttaccaacatttccttgataagcatgg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AATAGTTTTGAAATAAATATTGTGCAAGTGTAAATAATTTA
Unaligned ( gi|21 ): ATGGTCATATTGGTGTGTGGACATTCA
Alignments
lowQualScore : 222 1 1 1 1 1 11 11 1 1 11 11 666666666 1 1 1 1 1 1 222 2222 5555555555555555555555 1 1111111 2222222 111 333333333 2222 111 1 2 11 222 3333333 1 11 444444 1 11 1111111 11 111 1 1111 22 2222 11 111 1 1 444444444 11 1 222 1 1 1 1 1 1 1 1 1 222 1 1 11 1 1 1 1 1 2222 1 11 1 222 1 222 1 1 1 1 1 1 1 111 1 11 1 2222 1 11 1 1 22222 11 222 3333333 444444444 1 5555555555555 111 1 2 11 1 1 222 22222 1 1111 22222 11 11111111 1 1 111 111 1111111 333 11 222222 11 111 1 11 111 3333333 1 33333333333 1 111 1 4444444444444444 22222 11 1 1 1 2222222 1 2222 22222 1 22222 111 1111 11 222222222222222222 111 1 1111 88888888888888888888888888888888888 1111 1 1111 2222 333333333 11111 111 44444444 111 1 11 11 1 1 11 11111 1111 2222 22222222222 11 22 1111 3333333333333333 33333333333333 1 1 111111 111 111
lowQualScore : 111 5 5 5 5 5 1 1 1 88 1 88 5 3 99 7 7 11 7 666666666 6 7 7 7 3 5 5 5 5 5 333 8888 7 0000000000000000000000 0 2222222 0000000 444 6 111111111 2 0000 0 000 0 3 99 3 2 3 1 55 333 1 1 3333333 5 88 7 777777 2 44 7 555 0 4444444 55 777 7 6 3 8888 00 6 8888 88 999 7 3 3 111111111 1 7 88 5 333 5 5 1 1 5 1 1 5 1 5 5 5 5 5 222 1 5 1 5 1 88 5 1 5 5 5 1 5 2 3333 1 1 5 88 5 111 1 5 111 5 22 5 5 5 5 5 5 999 7 6 5 66 5 1 3333 1 5 88 5 5 22 66666 88 1 111 1 1111111 000000000 0 3333333333333 444 0 33 0 11 6 33 0 0 000 2 0 44444 00 0 3 3 3 8 8 1 7777 0 77 22 00000 11 55 00000000 5 0 444 111 8 3 8888888 0 333 8 88 44 8 0 555555 11 3 111 0 33 3 666 7777777 0 33333333333 2 9 1 777 0 3 8 66 3333333333333333 8 99 00000 3 1 11 11 11 6 0 0 2222222 0 2 55 5555 88 00000 77 5 77 5 66 5 0 5 0 66 55 2 55 66 888 55555 111 0000 66 11 666666666666666666 66 5 5 5 222 66 4 66 0 2 5 0 0 0 888 5 5 77 1 5 7777 5 22222222222222222222222222222222222 0 4444 8 99 6 3 99 1 0000 6 6 6 6 6 2222 3 6 444444444 44444 2 6 6 3 1 999 6 3 99 222 6 11111111 7 888 888 000 5 5 1 1 4 5 8 8 5 5 5 5 5 55 33 77 1 1 3 5 5 4 11 5 44444 555 5 77 1 0000 5 77 3333 55555555555 11 5 00 5 5 2222 5 5 1 2222222222222222 33333333333333 66 5 99 1 1 77 77 5 4 666666 5 0 1 000 8 000 5 5
lowQualScore : ... . . . . . . . . .. . .. . . .. . . .. . ......... . . . . . . . . . . ... .... . ...................... . ....... ....... ... . ......... . .... . ... . . .. . . . . .. ... . . ....... . .. . ...... . .. . ... . ....... .. ... . . . .... .. . .... .. ... . . . ......... . . .. . ... . . . . . . . . . . . . . . ... . . . . . .. . . . . . . . . .... . . . .. . ... . . ... . .. . . . . . . ... . . . .. . . .... . . .. . . .. ..... .. . ... . ....... ......... . ............. ... . .. . .. . .. . . ... . . ..... .. . . . . . . . .... . .. .. ..... .. .. ........ . . ... ... . . ....... . ... . .. .. . . ...... .. . ... . .. . ... ....... . ........... . . . ... . . . .. ................ . .. ..... . . .. .. .. . . . ....... . . .. .... .. ..... .. . .. . .. . . . . .. .. . .. .. ... ..... ... .... .. .. .................. .. . . . ... .. . .. . . . . . . ... . . .. . . .... . ................................... . .... . .. . . .. . .... . . . . . .... . . ......... ..... . . . . . ... . . .. ... . ........ . ... ... ... . . . . . . . . . . . . . .. .. .. . . . . . . .. . ..... ... . .. . .... . .. .... ........... .. . .. . . .... . . . ................ .............. .. . .. . . .. .. . . ...... . . . ... . ... . .
lowQualScore : 000 0 5 5 5 0 0 0 0 55 0 00 5 3 33 3 3 00 3 777777777 7 3 3 3 3 5 5 0 5 5 333 3333 3 7777777777777777777777 0 8888888 8888888 000 5 888888888 5 8888 2 222 0 2 88 2 5 7 0 77 333 0 0 5555555 5 55 3 777777 0 00 3 333 7 3333333 77 777 3 7 3 3333 77 7 7777 77 000 3 3 3 000000000 0 3 33 3 333 0 5 0 0 0 0 0 0 0 0 5 5 5 0 000 0 5 0 0 0 55 0 0 0 0 0 0 0 5 5555 0 0 5 00 0 000 0 5 000 5 00 5 0 0 0 0 0 000 3 7 0 55 5 0 5555 0 5 00 5 5 00 55555 55 0 555 0 0000000 000000000 0 0000000000000 000 0 55 0 22 5 55 0 0 888 0 2 55555 55 0 2 2 2 0 0 4 0000 8 00 44 22222 00 88 44444444 5 0 000 888 0 8 2222222 8 000 0 88 44 0 8 888888 66 2 000 0 22 2 222 0000000 0 00000000000 5 0 2 555 0 2 0 88 6666666666666666 0 00 00000 8 4 88 00 66 0 0 0 8888888 0 5 00 8888 88 00000 99 7 11 0 99 0 0 0 8 11 44 0 99 11 000 00000 111 6666 99 99 888888888888888888 99 0 0 0 888 11 4 11 0 5 0 4 1 1 333 7 7 99 4 7 9999 7 88888888888888888888888888888888888 8 0000 0 22 7 3 22 0 0000 7 7 7 7 7 0000 2 7 222222222 88888 5 7 7 7 0 555 7 2 22 888 7 77777777 3 888 888 000 7 7 4 4 0 7 4 4 7 7 7 7 7 44 11 99 4 4 0 7 7 3 66 7 33333 999 7 99 7 1111 7 99 7777 99999999999 11 7 11 7 7 1111 7 7 7 9999999999999999 66666666666666 77 7 77 4 4 99 99 7 3 444444 0 7 7 000 9 000 7 7
consensus : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------TGTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGC-TCAATTACTT-C-TAATTACAGCATTTATTGGT-TCA--TA-TTTGCC--T-GCATT-CTT-GATAAATTNCTATNGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----TCCTGACATTACGTACAAATCGNCGC-GCCTT-GT-TTAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATC-AATACATT-GANTAATGCCTTTGGA-TCAT-TTATCAA-GT-T-AA----ACTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTG-AGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T---GTGT--TTTTNTTGGGATATTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-TGTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAG-AGCAGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TA-A---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
Reference ( family-123 ) : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------TGTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGC-TCAATTACTT-C-TAATTACAGCATTTATTGGT-TCA--TA-TTTGCC--T-GCATT-CTT-GATAAATTNCTATGGCAAAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTAG----TCCTGACATTACGTACAAATCGNCGC-GCCTT-GTCCTAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATC-AATACATT-GAGTAATGCCTTTGGA-TCAT-TTATCAA-GT-T-AA----ACTTTNCAACAACATTT--CCTTGATAAGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAAAAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTCGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T---GTGT--TTTTCTTGGGATATTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-TGTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAG-AGCAGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TA-A---TTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
gi|1 : GGCCACTCTAGTCCATTAATTTTCACAAAGCTTAAAAATTTAATTCTTGTGGGTTTCA-TTAATATCTTTTGTCTATTTTATTTAGATTCCATCATCCATGGGCTCAATCAGTTTGCACTTGCA-ATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTT---GCATGGGAAGAGGGGTAATGGTATGGGAAAACT--------TGTACCCTACAATTCAATTTGTGTTTCAAGTCGCATAGT-TCCAGATATAATTG-TTATTC-ATTGTGGTGGAAACAACATTGGTCAATCAAGCAACACACTTGGGGGGGGGCGGGGGGGC----TCCAAAAAATTCTTCAAATCCACTTTACAGTTA-----TTAATAGTTAT-TGCTTCAA-CACTTCC-TGA-TACAGCTATTATTGGTCCCA--TATTTTGCCGTT-GCATT-CTTGGATAAATTCAT-TTGC-AAGTTCAGAAGACCTGTGAAAAAATGCTGGCTCCTAG--A----TTAACAGTTATT-AAATC--TTTCAGGGAGGGGGCATCTATAATTAT----GCCTGATATT-CGTACAAATCAACAC-GCCTT-GT-TTAGAAGGGTTG--GTTCATTTATCTGACTTGGGGAA-ATAGCA-T-ATTATCAAATACATT--AATAATG-CTTTGGATTCAT-TCATTAA-GT-TAAA----ACTTTCCAACAACATTT--CCTTGATCAGCAATCTGTGGGTGCTTTTTGTTG-CCAACTTGGTGGCACTTGGTTAGTAAG-CAATTTA-TTGCA-TCATTGTTAACCATTTACATGCACATGG-TCTTAA-TTCATATATTTTAATTTAGGTCTGGCCGGCATTTGTGCTGAAAGTTTGGGCAGTGCCATTGGCACTA-ATTTTCCATTGGTGATTGCTCTTTTGGTACACCAGTTGTAAGTTTGAT-TT--GCA-CAGTT---GTGCTTTCTATTTAC-AT---TGTGAATTTGAATAATGTAATTTTGTGACTTTAGGCACGCAATTGTGCGTTCCTCTTCATTT-ATTGAAAAAAAAT--ACTGGGGTGCAAAAT-GCAG-ATTTACTATTGTGATT--GCTTTGTCTGG-TACCAGTAGTTTTGATTTAGACATTGTGCTCTTCCT-----ACTTC--ATTTGGTAAAAATT-------CACTGGGC---------TGC-AAAATTT--GC--------CGC-C-CCA-TTCAG-TGT-TGG-GGATGGAGTCA-ATCT-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTC-CCGGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGG-CAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGTCAGCT----GTTTCATCG-GCG-G-CAT--CAAAAATTCAT-TTGTT---G--ATAATTTATTAAATT-GGCCA-TG-ACAAATACGCC--AAAC---TA--ATAT-GACTCAT---GT-T--TTTTATTGGGATATGGG---GCAT-A-TT-GAT-ACCTAGA---A-G---------AG-TGGTT-T-----CTGTTCTCTCTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCATAC-AAATAA--AGGTG---TTATCCA--CT-ATGGA-T-AAC--C-TAGTT-ATT-TAGCGCAAA-T--AATTTAGTT-CA--TTTA--TAGG-----TTAAAG--TTA----GGTTT--GG--AAA--T-------T-GC--G-TCG--GG-TTGCGG-TCTTCA--AGTATTGT--GCATCT-GC--GCA-TGT-CAG-A--AAACTTCCTTTCTCTTT-A-C-AAA-CT--CCAAGAG-AGCAGACGT-T-AA-AATTAT------------TT----GA-------------T-CCCAC--C-CTCCCT--CCTGTAT--TTAA-GTTTGGGAGC---GGTTGCTTTG--C--TT-TAA-TTTTAT-A-TTCAGCG-TCAT-GGTT-CAATATGGA-TGTGTG--GG------ATTA-GGC-G-CTAGAGAG-GT--TCAAG-ACTGG-AA-TGATGGAC---TCAG-CATGTG-GCAGCCTTGT-CC---T---TGG---TTTATGA-T-TGAG-CTGGC-T-AATTTTTGC-A-TAGTTTGTC-TGTC-ATC-GGGGGC-CTGTTTT--TATCCAGGT-CCC-TGGGCCA-AGAT-GGTACTTCTCATGCT-----TA----T-TA--TATGCTG-CAG---CTGT-TT--CAATC-GGCGCA----------ATAAAAA--TCA-TTTG-TGT-T--TA-A---TTATTAA-ATGGCCA-TGA-AAA----TAC---------GCCA--------------AACAT-AATATGAC-TC-ATGTTTTTA-TGGA-A--TT--GGGCAATATTTGATAA-CTA------G-A------AGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCGGAATGGG-GGTTGAAATTTGTCGCAAAATAA
gi|10 : CTT---AAATTTTATAT-GCTGCAAATT----GTTTCA-CGCGCGCGCCATCACAAAATCTCAT-TTGTTTGAA-TATAA-TTA--AAA-T-GGCCACTGCACACGCACGCCCAAAACACTTAACACAT-GGCTC-TCAAGTTC--TTGTCTGAGAAAGTTGGCGAGCATAATAT-GATAACCTAGT---ATGCCCAATAGCGG-TGGTC-TGCATGCTGCTGCGTTTAG--TCTTAT-c
gi|11 : AATAAT-AGGGT---TTATCCAACTT-ATGGAATAAAC--C-TAGTTTATT-TAGCGCAAATT--AATTTATTT-TATTTTTAATTAAGCCCCCCTAAAA--TTA----GGTTA--AGAAAAA--T-------TAACTAG-TCG--GG-TT-CAA-CTTTC---TGTGTTGT--GCATCT-GC--GCATTGTCCAGAATCAATCTTCCCTTCACTTTAA-C-GAA-TT--CAAAGAG-AGCAGACGTAC-AA-AATT
gi|12 : tACTGGAC---------TGC-AAAATT---GC--------TGC-T-CCACTTTAGATTC-TGGTGAATAG-GTCATAG-G-ACATCGGTAA---G-GAAC-G--TTGACAC-ATTTTTG-CATAGATTG----CTGTCTCCTGTGGGTACTA----CCTTTTC--T-----------------ATGACAC-TCTGTCACTT---GA--TTTTTTT-TCT-CCGATT----G----ATCA---GCG-CAT-A--------CAT-TTGTT---C-GATAATTt
gi|13 : GGT----TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAA--TTA----GGTTA--GG--AAAG-T-------T-AC--G-TCG--GG-TT-CGA-CATTCT--TATGTTGT--GCATCT-GC--GCA-TGTCCAG-AT
gi|14 : agATCAAGATCACCTTTCATGCAATTCATT-TACTATTTTATGGCATGGGAAAAGGGGTA-TGATATGGGAAAACGACAAAACGTGTACCCTACAATTCAATTTTTTTGTCAAGTCGCATAGT-TCCAGATATAATT
gi|15 : AACA---TGGGAGGGGGGGGGGGGGGGGCTTGTCACGA------TCATTTCTCT------GTTGCCTATTCA----TTATATG-------TATTT-CATTATTTCAGCATCCATTAGTATCAAGTA-TTTG--------A---CTT-GA-AAATTCCTACG
gi|16 : CGCAAATT--AAT--ATTT-TA--TTTA--TAAG-----CTAAAA--TTA----AGTTA--GG--AAAATT-------T-GC--G-ACGGAGG-TT-CGA-CCTTCA--TGTGTTGT--GCATCT-GC--G
gi|17 : GCAT-AATTTTG-CAAAGATTAATTCCTGTCTTTTGGGGATTCTGGTTTTTTTTTCTTCAGGCCCCTAGGGCCAAGA
gi|18 : taaGTTGT--GCATCT-GC--GCA-TGTCAAG-ATCAATTTTCCTTTCACTTT-G-C-GAA-TT--C--GGAG-AGCAGACGT-T-AA-AA
gi|19 : AC--C-TGATT-ATT-AAGCGCAAATT--AATTTATTT-CA--TCTA--TAAG-----Cagttt
gi|2 : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACTCG-TATGCAATTCATTA---CATTTTATGGC-TGGGA-----GGTAATGGTATGGAAAAAC---------TGTACC-TACA-TTCAATTTGTTTGTCA-GTCAC-TAGTATCCATGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA---TGGGGGGGGGGGGGGGGAGG----GTCAAAAAATTCTTCAAATCCAC------ATTA-----TCA----TTAT-TGC-TCAATTACTT-C-TAATTACAGCATTTATTGGT-TCA--TA-TTTGCC--T-GCATT-CTT-GATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAG-GGAGGCATCTATAAGT------TTCTGA-ATTACG-ACAACTAACCGC-ACATTAGTATTAGAAAGGT--GAGTTCATTTATCTG-CTTGGGAAATATAGCA-TATTTATC---TA-ATTAAAGTAATGCCTTTG---TC-T-TTATCAACGT-T-AC----ACTTTTCAACAACATTTTACCTTGAT-AGCA---TGT-GGTGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-A-TTTAATTTGTG-CTCG-CGTCA--TGTGCTGAAA-TTTGGCTA-TGCCACT-GCACTACATTTCCAATT-GTGATTGCTTGTCTGGTAC-C--GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTG-ATATGGTGA-TTTGTGATTTTA-GCAC-CAATTGTGCGCT-CTCTT-ATTTCGTTG----AAAATTCACT--GGTGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAG-TTTGATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGT---ACTTTGGGCACCATTGTGCTTCTTTCTTTGCGAAAATTCTGGCTGCATATTCGC-CGCCA-T--AGTTGA-TGGCGGA--G-GTCA-AT-T-ACGTTGTCCATAGT-GTTCACATTTG--AT-AATTATGTCATAGTATG----CTGT-TC---GGGGCACTG----TTTTTTC--CA-GTTCCCT--GCT--GATGGTAC-TCTAT-GCTT---AA----TATAT-G-TGCCAA------G--TCATCG---ACG-CAT-ACAAAA--TAAT-T--AT---G-TATAAATTATTAAA-TGGGCCA-TG--C-AATACCCC--TAAC--------TATAGACTC-T---ATGTTATTTTATTGG--TATTGG---GCAT-ATTT-GA-AACCTAG----A--------A--GG-TGGTA-T-----TTG-TCTTTTTTT--TC-TGTCCGTCGTG-GG-GTT----AT-AATCTTGT--CG-ACAAAATAAT-AGTTC---TT-TACA--CT--TGGC-T-AAC--C-TAGTTCATT-TAGC-CAA--T--AATTAG--T-CA--TTT---TAGGT----TTAAAG--TTA-----GTTA--GGA-AAA--T-------T-GCTTC-TCG--GG-TT-CTG-TCTTCA--AGTATTGT--GCATCT-GC--G-A-TGTCAAG-AACA--TTTCCTTTCTCTTT-A-CAAAA-CT--CACGGAG-AGCA-ACG--T-AA-AATT-T------------TA----TA-------------TAACCAC--G-CT-CCT-CCCT-TAT--TTAA-GTT---TAGCTTGGATTGCTT-----GCTT---A-TTTTATAATTTC-GCT-TCCTAGGTT-CCATA-TGG-CGTGTG--GATTCGTTAT------------G-GAA-A-GGTCAAAA---------TGGTGGAC-GTTC-A-C-TGTG-ACCTC--TGT-CC---T---TGG---T---TAA-TATGGT-ACGGTAT-A---TTTGC-A-TGTTTTG-C--GTCTATC--GCGGCACTG--TT--TTTCCA-GC-CCC-T-GGCCA-AGAT-GGTACTTCT-A-GCT-----TAAGTGT-TATTTATGCTGCCAA----CGTATT--CAATCGGGCGCA---T------ACAAAAATATCATTTTGTTG--TA-TA-ATATTTACTAA-ATGGCCATTGACAAA----TAC---------GCCA--------------A-----TATATGAC-TT----TTTTTA-TGAT-A--TT---GGC-CTATTTGATAA--TA------G-----AAT-GGTGGTTTTT-TTCT-T---TTTGTCTGTCGTCG---TGGG-GA-TGAAATTTGTCGCAA
gi|3 : TGTAGAAAAATTCACTGGGCTGCAAAAT
gi|3 : CACTGGGC---------TGC-AAAATT---GT--------CGCGC-CCA-TTCAA-TGTGTGGCGGATGG-GTCA-AT-CGACATTGTCTA---TTGCCC-CATT--GCATTAATTTTG-CATAGTTTG----CTGTCTCCAGG------T-----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTATTTCTAT-GCTTTAAAA--TTCATATTGCTGCCAATTTTTTGTTTCATCA----CG-CAT-ACAAAAATTCATGTTGTT---GATATA---TATTAAA-T-TGCCA-TG-ACAAACACGC---AAACA--TA--ATAT-GACTC-----GTGT--TTTTCTTGC-ACATTGG---GCAT-ATTTTGATTACCTAGT---A-G-CCAATA--CG-TGGTT-T-----CTGTTTTCTT--A--ATTTGTACGTTGTG-GAAGGT----GA-AAT-TTGTCGTA-A---ACTAAT-AGG-G---TTATCCA--CT-ATGGA-TAAAC--T-TGGTT-ATT-TAGCGCAAATT--AACCGATTT-TA--TTTA--TAAG-----CTAAA---TTA----GGTTA--GA--AAA--T-------T-AC--G-TCG--GG--T-CTA-CCTTCA--TGTG-TGTTGGCATCT-GC--GCA-TGTCCAG-ATCAGTCTTCA-TTCACTTT-G-C-GAA-TT--CAAAGAG-AGCAGACGTAC-AA-AATT-T------------CT----GA-------------TACCCAC--C-CTCCCTCCCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAATTTTTAT-CTTTCAGCG-TCAT-GGTC---ATATTGG-TGTGTG--GA-----CATTC--AT-GCCTAG-GAG-GCGGCCACGTA-TGG-AATTGATGGAC-GTTC-G-C-TCTGAA------TGTACCCAAT---TAG---TTTCTTA-T-CGGA-CTGGCAT-AA--TTTGCAA-TAGTTTG-C-TGTC-TCC-AGGGGCACTGTTTT--TTTCCAGGTCCCC-TGGGCCA-AGAT-GGTATTTCT-ATGCTTTAAATAA-T-T-CA--TATGCTGCCAATTTTTGT-TT--CA--C-GGCGCA---T------ACAAAAAT-TCA-TTTGTTGA-TA-TATA---TT-TTAA-ATTGCCA-TGACAAA----CAC---------GCCA--------------AACATAAATATGACTTC-GTGTTTTTCTTGCACA--TT--GGGC-ATATTTGATTACCTA------GTAGCCAATACGTGGTTTCTGTTTTCTAAATT----TGTCGCTG---TGGGAGG-TGAAATTTGTCGCAAAATAAtgtcgcgcccattcaatgtgtggcggatgggtcaatcgacattgtctattgccccattgcattaattttgcatagtttgctgtctccaggtttttttccaggtcccctgggccaagatggtatttctatgctttaaaattcatattgctgccaattttttgtttcatcacgcatacaaaaattcatgttgttgatatatattaaattgccatgacaaacacgcaaacataatatgactcgtgtttttcttgcacattgggcatattttgattacctagtagccaatacgtggtttctgttttcttaatttgtacgttgtggaaggtgaaatttgtcgtaaactaatagggttatccactatggataaacttggttatttagcgcaaattaaccgattttatttataagctaaattaggttagaaaattacgtcgggtctaccttcatgtgtgttggcatctgcgcatgtccagatcagtcttcattcactttgcgaattcaaagagagcagacgtacaaaatttctgatacccaccctccctcccctgcatttaagtttgtagctggttgctttgcgttttaatttttatctttcagcgtcatggtcatattggtgtgtggacattcatgcctaggaggcggccacgtatggaattgatggacgttcgctctgaatgtacccaattagtttcttatcggactggcataatttgcaatagtttgctgtctccaggggcactgtttttttccaggtcccctgggccaagatggtatttctatgctttaaataattcatatgctgccaatttttgtttcacggcgcatacaaaaattcatttgttgatatatattttaaattgccatgacaaacacgccaaacataaatatgacttcgtgtttttcttgcacattgggcatatttgattacctagtagccaatacgtggtttctgttttctaaatttgtcgctgtgggaggtgaaatttgtcgcaaaataa
gi|4 : tgtagaaaaattG---TTATCCA--CT-ATGG--TAAACTGC-TG-TT-ATT-TAGCGCAAATT--AAT--ATTT--A--TTTA--TAAG-----CTAAAA--T-A----GGTTA--GG--AAAA-T-------T-AC--GGTCG--GG-T--CGA-CCTTCT--TGTGTTG---GCATCTTGC--GCA-TGTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAAATT--CAAAGAG-AGCAGATAA-A-AA-AAAAATAAAAAAAAAAAATT----GA-------------TACCCAC--CTCTCCTT-CCCTGTATATTTAA-GTTT-GTAGCT--G-TTGCTTTG--CGTTT-TAA-TGATAT-CTTTCAGCG-TCAT-GGT------------------------CA-CATTC-AGC-GCCTAG-GAG-GTGGCCACGTACTGG-AGTTGATGGAT-GTTCGG-C-TG-G-A------TGTACC---TAATTAG---TTTCCTA-T-CGGGACTGGCAT-AA-TTTTGC-A-TAGATTG-C-TGTC-TCCAGGGGGCACTG-TTT--TTTCCAGGTCCCC-TAGGCCA-AGAT-GGTATTTCT-ATGCT-----TAA-T-T-CA--TATGCTGCCAA---TTGT-TT--CATT--GGCGCATATT------ACAAAAAT-TCA-TTTGTTG---A-TA-G---ATATTAA-ANGG-CA-T-ACAAAAATTCATTTGTTGATGGCCATGACAAACAAGCCAAACAT-AATATGAC-TT-GTGTTTTTCTTGGATA--TT--GGGC-ATATTTGATAACCTATAGCTTGTAGCCAATAGGTGGTTTCTGTTTTCT---TTTGTCTATCGCTG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|5 : ctagTT-AATAACCTAGTTTAG-G-CCAATA--GGATGGTGAT-----CTGTTTTCCTTTGCGTCT-GT-CGTCGTGCGA-AGCCTTCGATAAT-TT-TCTCG--C-AAATCATGAGGCGCTATTATCCA--CTTATGGA-TAAAC--CGTGGTT-ATTCTAGCGCCAACTTAAATTTAATTATA--TTT---TCAGTGTC-CTAAAGCTTTATAAGGGGTACGGG--AAA--CAAATTAAT-AC----TCG--GGGTT-CGATCCTTCTCATGTTTTGT--GCATCT-GCCGGCATTGT-CAA-ATCAATC-TCCTTCCA-TTT-GTC-GAA-CTTCCAAAGAGCAGCAGACGT-TCAATAATTAC------------TTTGTAGAGGCGAATATAGATTACCCACTTC-CTCCTC-CCCTGCAT--TTAAGGTTTGGTAGCT--GGTATCTTTGGTCTTTTATAT-TTTTAT-CTTTCAGCGTTCA---ATTGCAATATTGGTTGTGTGCTAGTTCATCATTCAGGCGGCCTAG-GAGTGCGGCCAGGAACTGGAAATTGATGGACGGTTCGGAC-CTTG-A------TGTACC---T---
gi|6 : atttggcatcagctaGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CTTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-TGT--CAATATTGG-TGTGTG--TATTTATCATTC-AGC-GCCTAG-GAG-GCGGCCAGGAACTGG-AATTGATGGAC-TTTCGC-T-TGTG----------TACC---T---TGGAAGTTTCTGAGT-CGGG-ACGG-ATGAATTT--GC-AGTAGTTAG-CGTGTC-ACCAGGGGGCACTGTTTTATTTTTCAGGT-CCC-CTGGTCAGAGATTGGTA-TTCT--T-CT-----TAA-T-TATT--TATGCTGCCAA---TTGT-TTTTCA-TC-GGTGCA---TGCATATACAAAAAT--CA-TTTGTTGT-TA-TA-A---TTATTAACATGGCCA-TGACTTATCG-CAC---------GCCA--------------AACAC-TACATGGC-TCTGTCTTTTCT-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTATCGTCG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|7 : C---T---TGG---TTTCTGA-T-CGGG-CTGGTAT-GATTTT-GC-A-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGAT-----TAA-T-T-TG--TATGCTGTCAA---TTGT-TT--CACT--GACGCG---T------AAAAAAAA-TCA-TTTGTTGTGTAATA-A---ATATTAA-ATGGCCT-AAACAAAA---CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-A--TTTTGAGC-ATATTTGATAACTTA------GTAGCTAATAGGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GA-GAAAATGT-TCGCAAAA
gi|8 : C---T---TGG---TTTCTGA-T-CGGGACTGGTAT-GATTTT-GC-A-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGAT-----TAA-T-T-TG--TATGCTGTCAA---TTGT-TT--CACT--GACGCG---T------ACAAAAAA-TCA-TTTGTTGTATA-TA-A---ATATTAA-ATGGCCA-TAACAAA----CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-ATTTT--GAGC-ATATTTGATAACTTA------GTAGCTAATAGGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GG-AGAAAATTGTCGCAAA
gi|9 : TAT-TGC-TCAGTTACTC-A-GACGTACAGC---TATT------------TTTGCC--TCGTATTACTT-GGTTAATTA-TATTGC-AAATTCATAGGG--TG---AAAAAT
gi|9 : acattcttagcggaAAGGGACATCTATAATTAAGTTATCCAGACCTTA-GTACATATTGTGACTGTCAG-GTCCTAGAAGGGATAGAGTTCATTTATCTGACTT-GGGCA-ATGGTGTT-TTTATC-AATACCTT-GTCTAAT-TCTTTGGA-TCATATTATCAA-ATCC-AAAGTTACTTTAC--CAACATTT--CCTTGATAAGCA---TGtagtcttttgtgcgacataagggacatctataattaagttatccagaccttagtacatattgtgactgtcaggtcctagaagggatagagttcatttatctgacttgggcaatggtgtttttatcaataccttgtctaattctttggatcatattatcaaatccaaagttactttaccaacatttccttgataagcatgg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AATAGTTTTGAAATAAATATTGTGCAAGTGTAAATAATTTA
Unaligned ( gi|21 ): ATGGTCATATTGGTGTGTGGACATTCA
Alignments
lowQualScore : 222 1 1 1 1 1 11 11 1 1 11 11 55555555555 1 1 1 1 1 1 222 2222 5555555555555555555555 1 1 2 111 2222222 1 2222 111 1 1 11 222 22222 1 1 11 44444444 1 11 1111111 222 11 1 1111 111 2222 11111 1 1 333333 11 2 222 1 1 1 1 1 1 1 1 1 222 1 1 11 1 1 1 1 1 2222 1 11 1 222 1 222 1 1 1 1 1 1 1 11 1 11 1 2222 1 11 1 1 22222 11 222 3333333 444444444 1 5555555555555 111 1 2 11 1 1 222 22222 1 1111 22222 11 11111111 1 1 111 111 1111111 333 11 222222 11 111 1 11 111 3333333 1 222222222 1 11 1 111 1 4444444444444444 22222 11 1 1 1 2222222 1 2222 22222 1 22222 111 1111 11 222222222222222222 111 111 1111 88888888888888888888888888888888888 1111 1 1111 2222 333333333 11111 111 44444444 111 1 11 11 1 1 11 11111 1111 2222 22222222222 11 22 1111 3333333333333333 33333333333333 1 1 111111 111 111
lowQualScore : 111 5 5 5 5 5 1 1 1 88 1 88 5 3 99 7 7 11 7 77777777777 6 7 7 7 3 5 5 5 5 5 333 8888 7 0000000000000000000000 0 2 0 444 0 1 3 444 6 7777777 0 2 0000 0 000 0 3 99 3 1 3 1 55 333 1 1 77777 5 5 88 7 55555555 2 44 7 555 0 4444444 222 11 7 7 6 3 8888 999 6 6666 888 6 55555 3 3 222222 1 7 88 6 333 5 5 1 1 5 1 1 5 1 5 5 5 5 5 222 1 5 1 5 1 88 5 1 5 5 5 1 5 2 3333 1 1 5 88 5 111 1 5 111 5 22 5 5 5 5 5 5 11 6 6 5 66 5 1 3333 1 5 88 5 5 22 66666 88 1 111 1 1111111 000000000 0 3333333333333 444 0 33 0 11 6 33 0 0 000 0 44444 00 0 3 3 3 8 8 1 7777 0 77 22 00000 11 55 00000000 5 0 444 111 8 3 8888888 0 333 8 88 44 8 0 555555 11 3 111 0 33 3 666 7777777 0 666666666 1 0 55 1 0 777 0 3 8 66 3333333333333333 8 99 00000 3 1 11 11 11 6 0 0 2222222 0 2 55 5555 88 00000 77 5 77 5 66 5 0 5 0 66 55 2 55 66 888 55555 111 0000 66 11 666666666666666666 66 5 5 5 222 66 4 66 5 5 2 5 0 0 0 888 5 5 77 1 000 7777 5 22222222222222222222222222222222222 0 4444 8 99 6 3 99 1 0000 6 6 6 6 6 2222 3 6 444444444 44444 2 6 6 3 1 999 6 3 99 222 6 11111111 7 888 888 000 5 5 1 1 4 5 8 8 5 5 5 5 5 55 33 77 1 1 3 5 5 4 11 5 44444 555 5 77 1 0000 5 77 3333 55555555555 11 5 00 5 1111 5 5 1 2222222222222222 33333333333333 66 5 99 1 1 77 77 5 4 666666 5 0 1 000 8 000 5 5
lowQualScore : ... . . . . . . . . .. . .. . . .. . . .. . ........... . . . . . . . . . . ... .... . ...................... . . . ... . . . ... . ....... . . .... . ... . . .. . . . . .. ... . . ..... . . .. . ........ . .. . ... . ....... ... .. . . . . .... ... . .... ... . ..... . . ...... . . .. . ... . . . . . . . . . . . . . . ... . . . . . .. . . . . . . . . .... . . . .. . ... . . ... . .. . . . . . . .. . . . .. . . .... . . .. . . .. ..... .. . ... . ....... ......... . ............. ... . .. . .. . .. . . ... . ..... .. . . . . . . . .... . .. .. ..... .. .. ........ . . ... ... . . ....... . ... . .. .. . . ...... .. . ... . .. . ... ....... . ......... . . .. . . ... . . . .. ................ . .. ..... . . .. .. .. . . . ....... . . .. .... .. ..... .. . .. . .. . . . . .. .. . .. .. ... ..... ... .... .. .. .................. .. . . . ... .. . .. . . . . . . . ... . . .. . ... .... . ................................... . .... . .. . . .. . .... . . . . . .... . . ......... ..... . . . . . ... . . .. ... . ........ . ... ... ... . . . . . . . . . . . . . .. .. .. . . . . . . .. . ..... ... . .. . .... . .. .... ........... .. . .. . .... . . . ................ .............. .. . .. . . .. .. . . ...... . . . ... . ... . .
lowQualScore : 000 0 5 5 5 0 0 0 0 55 0 00 5 3 33 3 3 00 3 77777777777 7 3 3 3 3 5 5 0 5 5 333 3333 3 7777777777777777777777 0 5 0 888 0 2 2 000 5 8888888 0 5 8888 2 222 0 2 88 2 0 3 0 77 333 0 0 00000 5 5 55 3 00000000 0 00 3 333 7 3333333 777 00 3 3 7 3 3333 777 7 0000 777 7 00000 3 3 777777 0 3 33 7 333 0 5 0 0 0 0 0 0 0 0 5 5 5 0 000 0 5 0 0 0 55 0 0 0 0 0 0 0 5 5555 0 0 5 00 0 000 0 5 000 5 00 5 0 0 0 0 0 00 7 7 0 55 5 0 5555 0 5 00 5 5 00 55555 55 0 555 0 0000000 000000000 0 0000000000000 000 0 55 0 22 5 55 0 0 888 2 55555 55 0 2 2 2 0 0 4 0000 8 00 44 22222 00 88 44444444 5 0 000 888 0 8 2222222 8 000 0 88 44 0 8 888888 66 2 000 0 22 2 222 0000000 0 000000000 0 0 22 2 0 555 0 2 0 88 6666666666666666 0 00 00000 8 4 88 00 66 0 0 0 8888888 0 5 00 8888 88 00000 99 7 11 0 99 0 0 0 8 11 44 0 99 11 000 00000 111 6666 99 99 888888888888888888 99 0 0 0 888 11 4 11 0 0 5 0 4 1 1 333 7 7 99 4 000 9999 7 88888888888888888888888888888888888 8 0000 0 22 7 3 22 0 0000 7 7 7 7 7 0000 2 7 222222222 88888 5 7 7 7 0 555 7 2 22 888 7 77777777 3 888 888 000 7 7 4 4 0 7 4 4 7 7 7 7 7 44 11 99 4 4 0 7 7 3 66 7 33333 999 7 99 7 1111 7 99 7777 99999999999 11 7 11 7 0000 7 7 7 9999999999999999 66666666666666 77 7 77 4 4 99 99 7 3 444444 0 7 7 000 9 000 7 7
consensus : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T-GTGT--TTTTAT-TGGGATA-TTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TAA---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
Reference ( family-123 ) : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATNGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T-GTGT--TTTTNT-TGGGATA-TTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TAA---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
gi|1 : GGCCACTCTAGTCCATTAATTTTCACAAAGCTTAAAAATTTAATTCTTGTGGGTTTCA-TTAATATCTTTTGTCTATTTTATTTAGATTCCATCATCCATGGGCTCAATCAGTTTGCACTTGCA-ATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTT---GCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------TTGTACCCTACAATTCAATTTGTGTTTCAAGTCGCATAGT-TCCAGATATAATTGTT-ATTCA-TTGTGGTGGAAACAACATTGGTCAATCAAGCAACACACTTGGGGGGGGGCGGGGGGGC----TCCAAAAAATTCTTCAAATCCACTTTACAGTTA-----TTAATAGTTAT-TGCTTCAAC-ACTTCCTGAT-ACAGCTATTATTGGT-CCCA--TATTTTGCCGTT-GCATT-CTTGGATAAATTCAT-TTGC-AAGTTCAGAAGACCTGTGAAAAAATGCTGGCTCCTAG-----ATT-AACAGTTATTAAA-TC--TTTCAGGGAGGGGGCATCTATAATTA-----TGCCTGATATT-CGTACAAATCAACAC-GCCTT-GT-T-TAGAAGGGTTGG--TTCATTTATCTGACTTGGGGAA-ATAGCA-T-ATTATCAAATACATT--AATAATGC-TTTGGATTCAT-TCATTAA-GT-TAA----AACTTTCCAACAACATTT--CCTTGATCAGCAATCTGTGGGTGCTTTTTGTTG-CCAACTTGGTGGCACTTGGTTAGTAAGC-AATTTA-TTGCAT-CATTGTTAACCATTTACATGCACATGGT-CTTAA-TTCATATATTTTAATTTAGGTCTGGCCGGCATTTGTGCTGAAAGTTTGGGCAGTGCCATTGGCACTA-ATTTTCCATTGGTGATTGCTCTTTTGGTACACCAGTTGTAAGTTTGAT-TT--GCA-CAGTT---GTGCTTTCTATTTAC-AT---TGTGAATTTGAATAATGTAATTTTGTGACTTTAGGCACGCAATTGTGCGTTCCTCTTCATTT-ATTGAAAAAAAAT-ACTGGGGTGCAAAAT-GCAG-ATTTACTATTGTGATT--GCTTTGTCTGG-TACCAGTAGTTTTGATTTAGACATTGTGCTCTTCCT-----ACTTC--ATTTGGTAAAAATT-------CACTGGGC---------TGC-AAAATTT--GC--------CGC-C-CCA-TTCAG-TGT-TGG-GGATGGAGTCA-ATCT-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTC-CCGGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGG-CAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGTCAGCT----GTTTCATCG-GCG-G-CAT--CAAAAATTCAT-TTGTT---G--ATAATTTATTAAATT-GGCCA-TG-ACAAATACGCC--AAAC---TA--ATAT-GACTCAT-GT-T--TTTTAT-TGGGATA-TGGG---GCAT-A-TT-GAT-ACCTAGA---A-G---------AG-TGGTT-T-----CTGTTCTCTCTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCATAC-AAATAA--AGGTG---TTATCCA--CT-ATGGA-T-AAC--C-TAGTT-ATT-TAGCGCAAA-T--AATTTAGTT-CA--TTTA--TAGG-----TTAAAG--TTA----GGTTT--GG--AAA--T-------T-GC--G-TCG--GG-TTGCGG-TCTTCA--AGTATTGT--GCATCT-GC--GCA-T-GT-CAG-A--AAACTTCCTTTCTCTTT-A-C-AAA-CT--CCAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------T-CCCAC--C-CTCCCT--CCTGTAT--TTAA-GTTTGGGAGC---GGTTGCTTTG--C--TT-TAA-TTTTAT-A-TTCAGCG-TCAT-GGTT-CAATATGGA-TGTGTG--GG------ATTA-GGC-G-CTAGAGAG-GT--TCAAG-ACTGG-AA-TGATGGAC---TCAG-CATGTG-GCAGCCTTGT-CC---T---TGG---TTTATGA-T-TGAG-CTGGC-T-AATTTTTGC-A-TAGTTTGTC-TGTC-ATC-GGGGGC-CTGTTTT--TATCCAGGT-CCC-TGGGCCA-AGAT-GGTACTTCTCATGCT-----TA----T-TA--TATGCTG-CAG---CTGT-TT--CAATC-GGCGCA----------ATAAAAA--TCA-TTTG-TGT-T--TAA---TTATTAA-ATGGCCA-TGA-AAA----TAC---------GCCA--------------AACAT-AATATGAC-TC-ATGTTTTTA-TGGA-A--TT--GGGCAATATTTGATAA-CTA------G-A------AGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCGGAATGGG-GGTTGAAATTTGTCGCAAAATAA
gi|10 : CTT---AAATTTTATAT-GCTGCAAATT----GTTTCA-CGCGCGCGCCATCACAAAATCTCAT-TTGTTTGAA-TATAA-TTA--AAA-T-GGCCACTGCACACGCACGCCCAAAACACTTAACACAT-GGCTC-TCAAGT--TCTTGTCTGAGAAAGTTGGCGAGCATAATAT-GATAACCTAGT---ATGCCCAATAGCGG-TGGTC-TGCATGCTGCTGCGTTTAG--TCTTAT-c
gi|11 : AATAAT-AGGGT---TTATCCAACTT-ATGGAATAAAC--C-TAGTTTATT-TAGCGCAAATT--AATTTATTT-TATTTTTAATTAAGCCCCCCTAAAA--TTA----GGTTA--AGAAAAA--T-------TAACTAG-TCG--GG-TT-CAA-CTTTC---TGTGTTGT--GCATCT-GC--GCATT-GTCCAGAATCAATCTTCCCTTCACTTTAA-C-GAA-TT--CAAAGAGAGC---AGACGTAC-AA-AATT
gi|12 : tACTGGAC---------TGC-AAAATT---GC--------TGC-T-CCACTTTAGATTC-TGGTGAATAG-GTCATAG-G-ACATCGGTAA---G-GAAC-G--TTGACAC-ATTTTTG-CATAGATTG----CTGTCTCCTGTGGGTACTA----CCTTTTC--T-----------------ATGACAC-TCTGTCACTT---GA--TTTTTTT-TCT-CCGATT----G----ATCA---GCG-CAT-A--------CAT-TTGTT---C-GATAATTt
gi|13 : GGT----TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAA--TTA----GGTTA--GG--AAAG-T-------T-AC--G-TCG--GG-TT-CGA-CATTCT--TATGTTGT--GCATCT-GC--GCA-T-GTCCAG-AT
gi|14 : agATCAAGATCACCTTTCATGCAATTCATT-TACTATTTTATGGCATGGGAAAAGGGGTA-TGATATGGGAAAACGACAAAACGT-GTACCCTACAATTCAATTTTTTTGTCAAGTCGCATAGT-TCCAGATATAATT
gi|15 : AACA---TGGGAGGGGGGGGGGGGGGGGCTTGTCACGA------TCATTTCTCT------GTTGCCTATTCA----TTATATG-------TATTTCATTATTTCAGCATCCATTAGTATC-AAGTATTT-G--------A---CTTG-A-AAATTCCTA
gi|16 : CGCAAATT--AAT--ATTT-TA--TTTA--TAAG-----CTAAAA--TTA----AGTTA--GG--AAAATT-------T-GC--G-ACGGAGG-TT-CGA-CCTTCA--TGTGTTGT--GCATCT-GC--Gcg
gi|17 : GCAT-AATTTTG-CAAAGATTAATTCCTGTCTTTTGGGGATTCTGGTTTTTTTTTCTTCAGGCCCCTAGGGCCAAGA
gi|18 : taaGTTGT--GCATCT-GC--GCA-T-GTCAAG-ATCAATTTTCCTTTCACTTT-G-C-GAA-TT--C--GGAGAGC---AGACGT-T-AA-AA
gi|19 : AC--C-TGATT-ATT-AAGCGCAAATT--AATTTATTT-CA--TCTA--TAAG-----Cagttt
gi|2 : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACTCG-TATGCAATTCATTA---CATTTTATGGC-TGGGA-----GGTAATGGTATGGAAAAAC---------T-GTACC-TACA-TTCAATTTGTTTGTCA-GTCAC-TAGTATCCATGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA---TGGGGGGGGGGGGGGGGAGG----GTCAAAAAATTCTTCAAATCCAC------ATTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAG-GGAGGCATCTATAAGT------T-TCTGA-ATTACG-ACAACTAACCGC-ACATTAGTAT-TAGAAAGGT--GAGTTCATTTATCTG-CTTGGGAAATATAGCA-TATTTATC---TA-ATTAAAGTAATGCCTTTG--T-C-T-TTATCAACGT-TAC----A-CTTTTCAACAACATTTTACCTTGAT-AGCA---TGT-GGTGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-A-TTTAATTTGTG-CTCG-CGTCA--TGTGCTGAAA-TTTGGCTA-TGCCACT-GCACTACATTTCCAATT-GTGATTGCTTGTCTGGTAC-C--GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTG-ATATGGTGA-TTTGTGATTTTA-GCAC-CAATTGTGCGCT-CTCTT-ATTTCGTTG---AAAATTCACT--GGTGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAG-TTTGATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGT---ACTTTGGGCACCATTGTGCTTCTTTCTTTGCGAAAATTCTGGCTGCATATTCGC-CGCCA-T--AGTTGA-TGGCGGA--G-GTCA-AT-T-ACGTTGTCCATAGT-GTTCACATTTG--AT-AATTATGTCATAGTATG----CTGT-TC---GGGGCACTG----TTTTTTC--CA-GTTCCCT--GCT--GATGGTAC-TCTAT-GCTT---AA----TATAT-G-TGCCAA------G--TCATCG---ACG-CAT-ACAAAA--TAAT-T--AT---G-TATAAATTATTAAA-TGGGCCA-TG--C-AATACCCC--TAAC--------TATAGACTC-T-ATGTTATTTTAT-TGG--TA-TTGG---GCAT-ATTT-GA-AACCTAG----A--------A--GG-TGGTA-T-----TTG-TCTTTTTTT--TC-TGTCCGTCGTG-GG-GTT----AT-AATCTTGT--CG-ACAAAATAAT-AGTTC---TT-TACA--CT--TGGC-T-AAC--C-TAGTTCATT-TAGC-CAA--T--AATTAG--T-CA--TTT---TAGGT----TTAAAG--TTA-----GTTA--GGA-AAA--T-------T-GCTTC-TCG--GG-TT-CTG-TCTTCA--AGTATTGT--GCATCT-GC--G-A-T-GTCAAG-AACA--TTTCCTTTCTCTTT-A-CAAAA-CT--CACGGAGAGC---A-ACG--T-AA-AATT-T------------TA----TA-------------TAACCAC--G-CT-CCT-CCCT-TAT--TTAA-GTT---TAGCTTGGATTGCTT-----GCTT---A-TTTTATAATTTC-GCT-TCCTAGGTT-CCATA-TGG-CGTGTG--GATTCGTTAT------------G-GAA-A-GGTCAAAA---------TGGTGGAC-GTTC-A-C-TGTG-ACCTC--TGT-CC---T---TGG---T---TAA-TATGGT-ACGGTAT-A---TTTGC-A-TGTTTTG-C--GTCTATC--GCGGCACTG--TT--TTTCCA-GC-CCC-T-GGCCA-AGAT-GGTACTTCT-A-GCT-----TAAGTGT-TATTTATGCTGCCAA----CGTATT--CAATCGGGCGCA---T------ACAAAAATATCATTTTGTTG--TA-TAATATTTACTAA-ATGGCCATTGACAAA----TAC---------GCCA--------------A-----TATATGAC-TT----TTTTTA-TGAT-A--TT---GGC-CTATTTGATAA--TA------G-----AAT-GGTGGTTTTT-TTCT-T---TTTGTCTGTCGTCG---TGGG-GA-TGAAATTTGTCGCAA
gi|3 : AGAAAAATTCACTGGGCTGCAAAAT
gi|3 : tgtCACTGGGC---------TGC-AAAATT---GT--------CGCGC-CCA-TTCAA-TGTGTGGCGGATGG-GTCA-AT-CGACATTGTCTA---TTGCCC-CATT--GCATTAATTTTG-CATAGTTTG----CTGTCTCCAGG------T-----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTATTTCTAT-GCTTTAAAA--TTCATATTGCTGCCAATTTTTTGTTTCATCA----CG-CAT-ACAAAAATTCATGTTGTT---GATATA---TATTAAA-T-TGCCA-TG-ACAAACACGC---AAACA--TA--ATAT-GACTC---GTGT--TTTTCT-TGC-ACA-TTGG---GCAT-ATTTTGATTACCTAGT---A-G-CCAATA--CG-TGGTT-T-----CTGTTTTCTT--A--ATTTGTACGTTGTG-GAAGGT----GA-AAT-TTGTCGTA-A---ACTAAT-AGG-G---TTATCCA--CT-ATGGA-TAAAC--T-TGGTT-ATT-TAGCGCAAATT--AACCGATTT-TA--TTTA--TAAG-----CTAAA---TTA----GGTTA--GA--AAA--T-------T-AC--G-TCG--GG--T-CTA-CCTTCA--TGTG-TGTTGGCATCT-GC--GCA-T-GTCCAG-ATCAGTCTTCA-TTCACTTT-G-C-GAA-TT--CAAAGAGAGC---AGACGTAC-AA-AATT-T------------CT----GA-------------TACCCAC--C-CTCCCTCCCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAATTTTTAT-CTTTCAGCG-TCAT-GGTC---ATATTGG-TGTGTG--GA-----CATTC--AT-GCCTAG-GAG-GCGGCCACGTA-TGG-AATTGATGGAC-GTTC-G-C-TCTGAA------TGTACCCAAT---TAG---TTTCTTA-T-CGGA-CTGGCAT-AA--TTTGCAA-TAGTTTG-C-TGTC-TCC-AGGGGCACTGTTTT--TTTCCAGGTCCCC-TGGGCCA-AGAT-GGTATTTCT-ATGCTTTAAATAA-T-T-CA--TATGCTGCCAATTTTTGT-TT--CA--C-GGCGCA---T------ACAAAAAT-TCA-TTTGTTGA-TA-TAT---ATTTTAA-ATTGCCA-TGACAAA----CAC---------GCCA--------------AACATAAATATGACTTC-GTGTTTTTCTTGCACA--TT--GGGC-ATATTTGATTACCTA------GTAGCCAATACGTGGTTTCTGTTTTCTAAATT----TGTCGCTG---TGGGAGG-TGAAATTTGTCGCAAAATAAtgtcgcgcccattcaatgtgtggcggatgggtcaatcgacattgtctattgccccattgcattaattttgcatagtttgctgtctccaggtttttttccaggtcccctgggccaagatggtatttctatgctttaaaattcatattgctgccaattttttgtttcatcacgcatacaaaaattcatgttgttgatatatattaaattgccatgacaaacacgcaaacataatatgactcgtgtttttcttgcacattgggcatattttgattacctagtagccaatacgtggtttctgttttcttaatttgtacgttgtggaaggtgaaatttgtcgtaaactaatagggttatccactatggataaacttggttatttagcgcaaattaaccgattttatttataagctaaattaggttagaaaattacgtcgggtctaccttcatgtgtgttggcatctgcgcatgtccagatcagtcttcattcactttgcgaattcaaagagagcagacgtacaaaatttctgatacccaccctccctcccctgcatttaagtttgtagctggttgctttgcgttttaatttttatctttcagcgtcatggtcatattggtgtgtggacattcatgcctaggaggcggccacgtatggaattgatggacgttcgctctgaatgtacccaattagtttcttatcggactggcataatttgcaatagtttgctgtctccaggggcactgtttttttccaggtcccctgggccaagatggtatttctatgctttaaataattcatatgctgccaatttttgtttcacggcgcatacaaaaattcatttgttgatatatattttaaattgccatgacaaacacgccaaacataaatatgacttcgtgtttttcttgcacattgggcatatttgattacctagtagccaatacgtggtttctgttttctaaatttgtcgctgtgggaggtgaaatttgtcgcaaaataa
gi|4 : tgtagaaaaattG---TTATCCA--CT-ATGG--TAAACTGC-TG-TT-ATT-TAGCGCAAATT--AAT--ATTT--A--TTTA--TAAG-----CTAAAA--T-A----GGTTA--GG--AAAA-T-------T-AC--GGTCG--GG-T--CGA-CCTTCT--TGTGTTG---GCATCTTGC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAAATT--CAAAGAGAGC---AGATAA-A-AA-AAAAATAAAAAAAAAAAATT----GA-------------TACCCAC--CTCTCCTT-CCCTGTATATTTAA-GTTT-GTAGCT--G-TTGCTTTG--CGTTT-TAA-TGATAT-CTTTCAGCG-TCAT-GGT------------------------CA-CATTC-AGC-GCCTAG-GAG-GTGGCCACGTACTGG-AGTTGATGGAT-GTTCGG-C-TG-G-A------TGTACC---TAATTAG---TTTCCTA-T-CGGGACTGGCAT-AA-TTTTGC-A-TAGATTG-C-TGTC-TCCAGGGGGCACTG-TTT--TTTCCAGGTCCCC-TAGGCCA-AGAT-GGTATTTCT-ATGCT-----TAA-T-T-CA--TATGCTGCCAA---TTGT-TT--CATT--GGCGCATATT------ACAAAAAT-TCA-TTTGTTG---A-TAG---ATATTAA-ANGG-CA-T-ACAAAAATTCATTTGTTGATGGCCATGACAAACAAGCCAAACAT-AATATGAC-TT-GTGTTTTTCTTGGATA--TT--GGGC-ATATTTGATAACCTATAGCTTGTAGCCAATAGGTGGTTTCTGTTTTCT---TTTGTCTATCGCTG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|5 : ctagTT-AATAACCTAGTTTAG-G-CCAATA--GGATGGTGAT-----CTGTTTTCCTTTGCGTCT-GT-CGTCGTGCGA-AGCCTTCGATAAT-TT-TCTCG--C-AAATCATGAGGCGCTATTATCCA--CTTATGGA-TAAAC--CGTGGTT-ATTCTAGCGCCAACTTAAATTTAATTATA--TTT---TCAGTGTC-CTAAAGCTTTATAAGGGGTACGGG--AAA--CAAATTAAT-AC----TCG--GGGTT-CGATCCTTCTCATGTTTTGT--GCATCT-GCCGGCA-TTGTC-AA-ATCAATCT-CCTTCCA-TTT-GTC-GAA-CTTCCAAAGAG--CAGCAGACGT-TCAATAATTAC------------TTTGTAGAGGCGAATATAGATTACCCACTTC-CTCCTC-CCCTGCAT--TTAAGGTTTGGTAGCT--GGTATCTTTGGTCTTTTATAT-TTTTAT-CTTTCAGCGTTCA---ATTGCAATATTGGTTGTGTGCTAGTTCATCATTCAGGCGGCCTAG-GAGTGCGGCCAGGAACTGGAAATTGATGGACGGTTCGGAC-CTTG-A------TGTACC---T---
gi|6 : atttggcatcagctaGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CTTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-TGT--CAATATTGG-TGTGTG--TATTTATCATTC-AGC-GCCTAG-GAG-GCGGCCAGGAACTGG-AATTGATGGAC-TTTCGC-T-TGTG----------TACC---T---TGGAAGTTTCTGAGT-CGGG-ACGG-ATGAATTT--GC-AGTAGTTAG-CGTGTC-ACCAGGGGGCACTGTTTTATTTTTCAGGT-CCC-CTGGTCAGAGATTGGTA-TTCT--T-CT-----TAA-T-TATT--TATGCTGCCAA---TTGT-TTTTCA-TC-GGTGCA---TGCATATACAAAAAT--CA-TTTGTTGT-TA-TAA---TTATTAACATGGCCA-TGACTTATCG-CAC---------GCCA--------------AACAC-TACATGGC-TCTGTCTTTTCT-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTATCGTCG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|7 : C---T---TGG---TTTCTGA-T-CGGG-CTGGTAT-GATTTT-GC-A-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGAT-----TAA-T-T-TG--TATGCTGTCAA---TTGT-TT--CACT--GACGCG---T------AAAAAAAA-TCA-TTTGTTGTGTAATAA---ATATTAA-ATGGCCT-AAACAAAA---CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-A--TTTTGAGC-ATATTTGATAACTTA------GTAGCTAATAGGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GA-GAAAATGT-TCGCAAAA
gi|8 : C---T---TGG---TTTCTGA-T-CGGGACTGGTAT-GATTTT-GC-A-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGAT-----TAA-T-T-TG--TATGCTGTCAA---TTGT-TT--CACT--GACGCG---T------ACAAAAAA-TCA-TTTGTTGTATA-TAA---ATATTAA-ATGGCCA-TAACAAA----CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-ATTTT--GAGC-ATATTTGATAACTTA------GTAGCTAATAGGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GG-AGAAAATTGTCGCAAA
gi|9 : TAT-TGCT-CAGTTACTCA-GACGTACAGC---TATT------------TTT-GCC--TCGTATTACTTG-GTTAATTA-TATTGC-AAATTCATAGGG--TG---AAAAAT
gi|9 : acattcttagcggaAAGGGACATCTATAATTAAGTTAT-CCAGACCTTA-GTACATATTGTGACTGTCAG-GT-CCTAGAAGGGATAGAGTTCATTTATCTGACTT-GGGCA-ATGGTGTT-TTTATCAA-TACCTT-GTCTAAT-TCTTTGGAT-CATATTATCAA-ATCCAAAGTTA-CTTTAC--CAACATTT--CCTTGATAAGCA---TGtagtcttttgtgcgacataagggacatctataattaagttatccagaccttagtacatattgtgactgtcaggtcctagaagggatagagttcatttatctgacttgggcaatggtgtttttatcaataccttgtctaattctttggatcatattatcaaatccaaagttactttaccaacatttccttgataagcatgg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AATAGTTTTGAAATAAATATTGTGCAAGTGTAAATAATTTA
Unaligned ( gi|21 ): ATGGTCATATTGGTGTGTGGACATTCA
Alignments
lowQualScore : 222 1 1 1 1 1 11 11 1 1 11 11 55555555555 1 1 1 1 1 1 222 2222 5555555555555555555555 1 1 2 111 2222222 1 2222 111 1 1 11 222 22222 1 1 11 44444444 1 11 1111111 222 11 1 1111 111 2222 11111 1 1 333333 11 2 222 1 1 1 1 1 1 1 1 1 222 1 1 11 1 1 1 1 1 2222 1 11 1 222 1 222 1 1 1 1 1 1 1 11 1 11 1 2222 1 11 1 1 22222 11 222 3333333 444444444 1 5555555555555 111 1 2 11 1 1 222 22222 1 1111 22222 11 11111111 1 1 111 111 1111111 333 11 222222 11 111 1 11 111 3333333 1 222222222 1 11 1 111 1 4444444444444444 22222 11 1 1 1 2222222 1 2222 22222 1 22222 111 1111 11 222222222222222222 111 111 1111 88888888888888888888888888888888888 1111 1 1111 2222 333333333 11111 111 44444444 111 1 11 11 1 1 11 11111 1111 2222 22222222222 11 22 1111 3333333333333333 33333333333333 1 1 111111 111 111
lowQualScore : 111 5 5 5 5 5 1 1 1 88 1 88 5 3 99 7 7 11 7 77777777777 6 7 7 7 3 5 5 5 5 5 333 8888 7 0000000000000000000000 0 2 0 444 0 1 3 444 6 7777777 0 2 0000 0 000 0 3 99 3 3 1 55 333 1 1 77777 5 5 88 7 55555555 2 44 7 555 0 4444444 222 11 7 7 6 3 8888 999 6 6666 888 6 55555 3 3 222222 1 7 88 6 333 5 5 1 1 5 1 1 5 1 5 5 5 5 5 222 1 5 1 5 1 88 5 1 5 5 5 1 5 2 3333 1 1 5 88 5 111 1 5 111 5 22 5 5 5 5 5 5 11 6 6 5 66 5 1 3333 1 5 88 5 5 22 66666 88 1 111 1 1111111 000000000 0 3333333333333 444 0 33 0 11 6 33 0 0 000 0 44444 00 0 3 3 3 8 8 1 7777 0 77 22 00000 11 55 00000000 5 0 444 111 8 3 8888888 0 333 8 88 44 8 0 555555 11 3 111 0 33 3 666 7777777 0 666666666 0 0 55 1 0 777 0 3 8 66 3333333333333333 8 99 00000 3 1 11 11 11 6 0 0 2222222 0 2 55 5555 88 00000 77 5 77 5 66 5 0 5 0 66 55 2 55 66 888 55555 111 0000 66 11 666666666666666666 66 5 5 5 222 66 4 66 5 5 2 5 0 0 0 888 5 5 77 1 000 7777 5 22222222222222222222222222222222222 0 4444 8 99 6 3 99 1 0000 6 6 6 6 6 2222 3 6 444444444 44444 2 6 6 3 1 999 6 3 99 222 6 11111111 7 888 888 000 5 5 1 1 4 5 8 8 5 5 5 5 5 55 33 77 1 1 3 5 5 4 11 5 44444 555 5 77 1 0000 5 77 3333 55555555555 11 5 00 5 1111 5 5 1 2222222222222222 33333333333333 66 5 99 1 1 77 77 5 4 666666 5 0 1 000 8 000 5 5
lowQualScore : ... . . . . . . . . .. . .. . . .. . . .. . ........... . . . . . . . . . . ... .... . ...................... . . . ... . . . ... . ....... . . .... . ... . . .. . . . .. ... . . ..... . . .. . ........ . .. . ... . ....... ... .. . . . . .... ... . .... ... . ..... . . ...... . . .. . ... . . . . . . . . . . . . . . ... . . . . . .. . . . . . . . . .... . . . .. . ... . . ... . .. . . . . . . .. . . . .. . . .... . . .. . . .. ..... .. . ... . ....... ......... . ............. ... . .. . .. . .. . . ... . ..... .. . . . . . . . .... . .. .. ..... .. .. ........ . . ... ... . . ....... . ... . .. .. . . ...... .. . ... . .. . ... ....... . ......... . . .. . . ... . . . .. ................ . .. ..... . . .. .. .. . . . ....... . . .. .... .. ..... .. . .. . .. . . . . .. .. . .. .. ... ..... ... .... .. .. .................. .. . . . ... .. . .. . . . . . . . ... . . .. . ... .... . ................................... . .... . .. . . .. . .... . . . . . .... . . ......... ..... . . . . . ... . . .. ... . ........ . ... ... ... . . . . . . . . . . . . . .. .. .. . . . . . . .. . ..... ... . .. . .... . .. .... ........... .. . .. . .... . . . ................ .............. .. . .. . . .. .. . . ...... . . . ... . ... . .
lowQualScore : 000 0 5 5 5 0 0 0 0 55 0 00 5 3 33 3 3 00 3 77777777777 7 3 3 3 3 5 5 0 5 5 333 3333 3 7777777777777777777777 0 5 0 888 0 2 2 000 5 8888888 0 5 8888 2 222 0 2 88 2 3 0 77 333 0 0 00000 5 5 55 3 00000000 0 00 3 333 7 3333333 777 00 3 3 7 3 3333 777 7 0000 777 7 00000 3 3 777777 0 3 33 7 333 0 5 0 0 0 0 0 0 0 0 5 5 5 0 000 0 5 0 0 0 55 0 0 0 0 0 0 0 5 5555 0 0 5 00 0 000 0 5 000 5 00 5 0 0 0 0 0 00 7 7 0 55 5 0 5555 0 5 00 5 5 00 55555 55 0 555 0 0000000 000000000 0 0000000000000 000 0 55 0 22 5 55 0 0 888 2 55555 55 0 2 2 2 0 0 4 0000 8 00 44 22222 00 88 44444444 5 0 000 888 0 8 2222222 8 000 0 88 44 0 8 888888 66 2 000 0 22 2 222 0000000 0 000000000 8 0 22 2 0 555 0 2 0 88 6666666666666666 0 00 00000 8 4 88 00 66 0 0 0 8888888 0 5 00 8888 88 00000 99 7 11 0 99 0 0 0 8 11 44 0 99 11 000 00000 111 6666 99 99 888888888888888888 99 0 0 0 888 11 4 11 0 0 5 0 4 1 1 333 7 7 99 4 000 9999 7 88888888888888888888888888888888888 8 0000 0 22 7 3 22 0 0000 7 7 7 7 7 0000 2 7 222222222 88888 5 7 7 7 0 555 7 2 22 888 7 77777777 3 888 888 000 7 7 4 4 0 7 4 4 7 7 7 7 7 44 11 99 4 4 0 7 7 3 66 7 33333 999 7 99 7 1111 7 99 7777 99999999999 11 7 11 7 0000 7 7 7 9999999999999999 66666666666666 77 7 77 4 4 99 99 7 3 444444 0 7 7 000 9 000 7 7
consensus : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T-GTGT--TTTTAT-TGGGATA-TTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TAA---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
Reference ( family-123 ) : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T-GTGT--TTTTAT-TGGGATA-TTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TAA---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
gi|1 : GGCCACTCTAGTCCATTAATTTTCACAAAGCTTAAAAATTTAATTCTTGTGGGTTTCA-TTAATATCTTTTGTCTATTTTATTTAGATTCCATCATCCATGGGCTCAATCAGTTTGCACTTGCA-ATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTT---GCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------TTGTACCCTACAATTCAATTTGTGTTTCAAGTCGCATAGT-TCCAGATATAATTGTT-ATTCA-TTGTGGTGGAAACAACATTGGTCAATCAAGCAACACACTTGGGGGGGGGCGGGGGGGC----TCCAAAAAATTCTTCAAATCCACTTTACAGTTA-----TTAATAGTTAT-TGCTTCAAC-ACTTCCTGAT-ACAGCTATTATTGGT-CCCA--TATTTTGCCGTT-GCATT-CTTGGATAAATTCAT-TTGC-AAGTTCAGAAGACCTGTGAAAAAATGCTGGCTCCTAG-----ATT-AACAGTTATTAAA-TC--TTTCAGGGAGGGGGCATCTATAATTA-----TGCCTGATATT-CGTACAAATCAACAC-GCCTT-GT-T-TAGAAGGGTTGG--TTCATTTATCTGACTTGGGGAA-ATAGCA-T-ATTATCAAATACATT--AATAATGC-TTTGGATTCAT-TCATTAA-GT-TAA----AACTTTCCAACAACATTT--CCTTGATCAGCAATCTGTGGGTGCTTTTTGTTG-CCAACTTGGTGGCACTTGGTTAGTAAGC-AATTTA-TTGCAT-CATTGTTAACCATTTACATGCACATGGT-CTTAA-TTCATATATTTTAATTTAGGTCTGGCCGGCATTTGTGCTGAAAGTTTGGGCAGTGCCATTGGCACTA-ATTTTCCATTGGTGATTGCTCTTTTGGTACACCAGTTGTAAGTTTGAT-TT--GCA-CAGTT---GTGCTTTCTATTTAC-AT---TGTGAATTTGAATAATGTAATTTTGTGACTTTAGGCACGCAATTGTGCGTTCCTCTTCATTT-ATTGAAAAAAAAT-ACTGGGGTGCAAAAT-GCAG-ATTTACTATTGTGATT--GCTTTGTCTGG-TACCAGTAGTTTTGATTTAGACATTGTGCTCTTCCT-----ACTTC--ATTTGGTAAAAATT-------CACTGGGC---------TGC-AAAATTT--GC--------CGC-C-CCA-TTCAG-TGT-TGG-GGATGGAGTCA-ATCT-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTC-CCGGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGG-CAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGTCAGCT----GTTTCATCG-GCG-G-CAT--CAAAAATTCAT-TTGTT---G--ATAATTTATTAAATT-GGCCA-TG-ACAAATACGCC--AAAC---TA--ATAT-GACTCAT-GT-T--TTTTAT-TGGGATA-TGGG---GCAT-A-TT-GAT-ACCTAGA---A-G---------AG-TGGTT-T-----CTGTTCTCTCTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCATAC-AAATAA--AGGTG---TTATCCA--CT-ATGGA-T-AAC--C-TAGTT-ATT-TAGCGCAAA-T--AATTTAGTT-CA--TTTA--TAGG-----TTAAAG--TTA----GGTTT--GG--AAA--T-------T-GC--G-TCG--GG-TTGCGG-TCTTCA--AGTATTGT--GCATCT-GC--GCA-T-GT-CAG-A--AAACTTCCTTTCTCTTT-A-C-AAA-CT--CCAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------T-CCCAC--C-CTCCCT--CCTGTAT--TTAA-GTTTGGGAGC---GGTTGCTTTG--C--TT-TAA-TTTTAT-A-TTCAGCG-TCAT-GGTT-CAATATGGA-TGTGTG--GG------ATTA-GGC-G-CTAGAGAG-GT--TCAAG-ACTGG-AA-TGATGGAC---TCAG-CATGTG-GCAGCCTTGT-CC---T---TGG---TTTATGA-T-TGAG-CTGGC-T-AATTTTTGC-A-TAGTTTGTC-TGTC-ATC-GGGGGC-CTGTTTT--TATCCAGGT-CCC-TGGGCCA-AGAT-GGTACTTCTCATGCT-----TA----T-TA--TATGCTG-CAG---CTGT-TT--CAATC-GGCGCA----------ATAAAAA--TCA-TTTG-TGT-T--TAA---TTATTAA-ATGGCCA-TGA-AAA----TAC---------GCCA--------------AACAT-AATATGAC-TC-ATGTTTTTA-TGGA-A--TT--GGGCAATATTTGATAA-CTA------G-A------AGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCGGAATGGG-GGTTGAAATTTGTCGCAAAATAA
gi|10 : CTT---AAATTTTATAT-GCTGCAAATT----GTTTCA-CGCGCGCGCCATCACAAAATCTCAT-TTGTTTGAA-TATAA-TTA--AAA-T-GGCCACTGCACACGCACGCCCAAAACACTTAACACAT-GGCTC-TCAAGT--TCTTGTCTGAGAAAGTTGGCGAGCATAATAT-GATAACCTAGT---ATGCCCAATAGCGG-TGGTC-TGCATGCTGCTGCGTTTAG--TCTTAT-c
gi|11 : AATAAT-AGGGT---TTATCCAACTT-ATGGAATAAAC--C-TAGTTTATT-TAGCGCAAATT--AATTTATTT-TATTTTTAATTAAGCCCCCCTAAAA--TTA----GGTTA--AGAAAAA--T-------TAACTAG-TCG--GG-TT-CAA-CTTTC---TGTGTTGT--GCATCT-GC--GCATT-GTCCAGAATCAATCTTCCCTTCACTTTAA-C-GAA-TT--CAAAGAGAGC---AGACGTAC-AA-AATT
gi|12 : tACTGGAC---------TGC-AAAATT---GC--------TGC-T-CCACTTTAGATTC-TGGTGAATAG-GTCATAG-G-ACATCGGTAA---G-GAAC-G--TTGACAC-ATTTTTG-CATAGATTG----CTGTCTCCTGTGGGTACTA----CCTTTTC--T-----------------ATGACAC-TCTGTCACTT---GA--TTTTTTT-TCT-CCGATT----G----ATCA---GCG-CAT-A--------CAT-TTGTT---C-GATAATTt
gi|13 : GGT----TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAA--TTA----GGTTA--GG--AAAG-T-------T-AC--G-TCG--GG-TT-CGA-CATTCT--TATGTTGT--GCATCT-GC--GCA-T-GTCCAG-AT
gi|14 : agATCAAGATCACCTTTCATGCAATTCATT-TACTATTTTATGGCATGGGAAAAGGGGTA-TGATATGGGAAAACGACAAAACGT-GTACCCTACAATTCAATTTTTTTGTCAAGTCGCATAGT-TCCAGATATAATT
gi|15 : AACA---TGGGAGGGGGGGGGGGGGGGGCTTGTCACGA------TCATTTCTCT------GTTGCCTATTCA----TTATATG-------TATTTCATTATTTCAGCATCCATTAGTATC-AAGTATTT-G--------A---CTTG-A-AAATTCCTA
gi|16 : CGCAAATT--AAT--ATTT-TA--TTTA--TAAG-----CTAAAA--TTA----AGTTA--GG--AAAATT-------T-GC--G-ACGGAGG-TT-CGA-CCTTCA--TGTGTTGT--GCATCT-GC--Gcg
gi|17 : GCAT-AATTTTG-CAAAGATTAATTCCTGTCTTTTGGGGATTCTGGTTTTTTTTTCTTCAGGCCCCTAGGGCCAAGA
gi|18 : taaGTTGT--GCATCT-GC--GCA-T-GTCAAG-ATCAATTTTCCTTTCACTTT-G-C-GAA-TT--C--GGAGAGC---AGACGT-T-AA-AA
gi|19 : AC--C-TGATT-ATT-AAGCGCAAATT--AATTTATTT-CA--TCTA--TAAG-----Cagttt
gi|2 : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACTCG-TATGCAATTCATTA---CATTTTATGGC-TGGGA-----GGTAATGGTATGGAAAAAC---------T-GTACC-TACA-TTCAATTTGTTTGTCA-GTCAC-TAGTATCCATGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA---TGGGGGGGGGGGGGGGGAGG----GTCAAAAAATTCTTCAAATCCAC------ATTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAG-GGAGGCATCTATAAGT------T-TCTGA-ATTACG-ACAACTAACCGC-ACATTAGTAT-TAGAAAGGT--GAGTTCATTTATCTG-CTTGGGAAATATAGCA-TATTTATC---TA-ATTAAAGTAATGCCTTTG--T-C-T-TTATCAACGT-TAC----A-CTTTTCAACAACATTTTACCTTGAT-AGCA---TGT-GGTGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-A-TTTAATTTGTG-CTCG-CGTCA--TGTGCTGAAA-TTTGGCTA-TGCCACT-GCACTACATTTCCAATT-GTGATTGCTTGTCTGGTAC-C--GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTG-ATATGGTGA-TTTGTGATTTTA-GCAC-CAATTGTGCGCT-CTCTT-ATTTCGTTG---AAAATTCACT--GGTGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAG-TTTGATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGT---ACTTTGGGCACCATTGTGCTTCTTTCTTTGCGAAAATTCTGGCTGCATATTCGC-CGCCA-T--AGTTGA-TGGCGGA--G-GTCA-AT-T-ACGTTGTCCATAGT-GTTCACATTTG--AT-AATTATGTCATAGTATG----CTGT-TC---GGGGCACTG----TTTTTTC--CA-GTTCCCT--GCT--GATGGTAC-TCTAT-GCTT---AA----TATAT-G-TGCCAA------G--TCATCG---ACG-CAT-ACAAAA--TAAT-T--AT---G-TATAAATTATTAAA-TGGGCCA-TG--C-AATACCCC--TAAC--------TATAGACTC-T-ATGTTATTTTAT-TGG--TA-TTGG---GCAT-ATTT-GA-AACCTAG----A--------A--GG-TGGTA-T-----TTG-TCTTTTTTT--TC-TGTCCGTCGTG-GG-GTT----AT-AATCTTGT--CG-ACAAAATAAT-AGTTC---TT-TACA--CT--TGGC-T-AAC--C-TAGTTCATT-TAGC-CAA--T--AATTAG--T-CA--TTT---TAGGT----TTAAAG--TTA-----GTTA--GGA-AAA--T-------T-GCTTC-TCG--GG-TT-CTG-TCTTCA--AGTATTGT--GCATCT-GC--G-A-T-GTCAAG-AACA--TTTCCTTTCTCTTT-A-CAAAA-CT--CACGGAGAGC---A-ACG--T-AA-AATT-T------------TA----TA-------------TAACCAC--G-CT-CCT-CCCT-TAT--TTAA-GTT---TAGCTTGGATTGCTT-----GCTT---A-TTTTATAATTTC-GCT-TCCTAGGTT-CCATA-TGG-CGTGTG--GATTCGTTAT------------G-GAA-A-GGTCAAAA---------TGGTGGAC-GTTC-A-C-TGTG-ACCTC--TGT-CC---T---TGG---T---TAA-TATGGT-ACGGTAT-A---TTTGC-A-TGTTTTG-C--GTCTATC--GCGGCACTG--TT--TTTCCA-GC-CCC-T-GGCCA-AGAT-GGTACTTCT-A-GCT-----TAAGTGT-TATTTATGCTGCCAA----CGTATT--CAATCGGGCGCA---T------ACAAAAATATCATTTTGTTG--TA-TAATATTTACTAA-ATGGCCATTGACAAA----TAC---------GCCA--------------A-----TATATGAC-TT----TTTTTA-TGAT-A--TT---GGC-CTATTTGATAA--TA------G-----AAT-GGTGGTTTTT-TTCT-T---TTTGTCTGTCGTCG---TGGG-GA-TGAAATTTGTCGCAA
gi|3 : AGAAAAATTCACTGGGCTGCAAAAT
gi|3 : tgtCACTGGGC---------TGC-AAAATT---GT--------CGCGC-CCA-TTCAA-TGTGTGGCGGATGG-GTCA-AT-CGACATTGTCTA---TTGCCC-CATT--GCATTAATTTTG-CATAGTTTG----CTGTCTCCAGG------T-----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTATTTCTAT-GCTTTAAAA--TTCATATTGCTGCCAATTTTTTGTTTCATCA----CG-CAT-ACAAAAATTCATGTTGTT---GATATA---TATTAAA-T-TGCCA-TG-ACAAACACGC---AAACA--TA--ATAT-GACTC---GTGT--TTTTCT-TGC-ACA-TTGG---GCAT-ATTTTGATTACCTAGT---A-G-CCAATA--CG-TGGTT-T-----CTGTTTTCTT--A--ATTTGTACGTTGTG-GAAGGT----GA-AAT-TTGTCGTA-A---ACTAAT-AGG-G---TTATCCA--CT-ATGGA-TAAAC--T-TGGTT-ATT-TAGCGCAAATT--AACCGATTT-TA--TTTA--TAAG-----CTAAA---TTA----GGTTA--GA--AAA--T-------T-AC--G-TCG--GG--T-CTA-CCTTCA--TGTG-TGTTGGCATCT-GC--GCA-T-GTCCAG-ATCAGTCTTCA-TTCACTTT-G-C-GAA-TT--CAAAGAGAGC---AGACGTAC-AA-AATT-T------------CT----GA-------------TACCCAC--C-CTCCCTCCCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAATTTTTAT-CTTTCAGCG-TCAT-GGTC---ATATTGG-TGTGTG--GA-----CATTC--AT-GCCTAG-GAG-GCGGCCACGTA-TGG-AATTGATGGAC-GTTC-G-C-TCTGAA------TGTACCCAAT---TAG---TTTCTTA-T-CGGA-CTGGCAT-AA--TTTGCAA-TAGTTTG-C-TGTC-TCC-AGGGGCACTGTTTT--TTTCCAGGTCCCC-TGGGCCA-AGAT-GGTATTTCT-ATGCTTTAAATAA-T-T-CA--TATGCTGCCAATTTTTGT-TT--CA--C-GGCGCA---T------ACAAAAAT-TCA-TTTGTTGA-TA-TAT---ATTTTAA-ATTGCCA-TGACAAA----CAC---------GCCA--------------AACATAAATATGACTTC-GTGTTTTTCTTGCACA--TT--GGGC-ATATTTGATTACCTA------GTAGCCAATACGTGGTTTCTGTTTTCTAAATT----TGTCGCTG---TGGGAGG-TGAAATTTGTCGCAAAATAAtgtcgcgcccattcaatgtgtggcggatgggtcaatcgacattgtctattgccccattgcattaattttgcatagtttgctgtctccaggtttttttccaggtcccctgggccaagatggtatttctatgctttaaaattcatattgctgccaattttttgtttcatcacgcatacaaaaattcatgttgttgatatatattaaattgccatgacaaacacgcaaacataatatgactcgtgtttttcttgcacattgggcatattttgattacctagtagccaatacgtggtttctgttttcttaatttgtacgttgtggaaggtgaaatttgtcgtaaactaatagggttatccactatggataaacttggttatttagcgcaaattaaccgattttatttataagctaaattaggttagaaaattacgtcgggtctaccttcatgtgtgttggcatctgcgcatgtccagatcagtcttcattcactttgcgaattcaaagagagcagacgtacaaaatttctgatacccaccctccctcccctgcatttaagtttgtagctggttgctttgcgttttaatttttatctttcagcgtcatggtcatattggtgtgtggacattcatgcctaggaggcggccacgtatggaattgatggacgttcgctctgaatgtacccaattagtttcttatcggactggcataatttgcaatagtttgctgtctccaggggcactgtttttttccaggtcccctgggccaagatggtatttctatgctttaaataattcatatgctgccaatttttgtttcacggcgcatacaaaaattcatttgttgatatatattttaaattgccatgacaaacacgccaaacataaatatgacttcgtgtttttcttgcacattgggcatatttgattacctagtagccaatacgtggtttctgttttctaaatttgtcgctgtgggaggtgaaatttgtcgcaaaataa
gi|4 : tgtagaaaaattG---TTATCCA--CT-ATGG--TAAACTGC-TG-TT-ATT-TAGCGCAAATT--AAT--ATTT--A--TTTA--TAAG-----CTAAAA--T-A----GGTTA--GG--AAAA-T-------T-AC--GGTCG--GG-T--CGA-CCTTCT--TGTGTTG---GCATCTTGC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAAATT--CAAAGAGAGC---AGATAA-A-AA-AAAAATAAAAAAAAAAAATT----GA-------------TACCCAC--CTCTCCTT-CCCTGTATATTTAA-GTTT-GTAGCT--G-TTGCTTTG--CGTTT-TAA-TGATAT-CTTTCAGCG-TCAT-GGT------------------------CA-CATTC-AGC-GCCTAG-GAG-GTGGCCACGTACTGG-AGTTGATGGAT-GTTCGG-C-TG-G-A------TGTACC---TAATTAG---TTTCCTA-T-CGGGACTGGCAT-AA-TTTTGC-A-TAGATTG-C-TGTC-TCCAGGGGGCACTG-TTT--TTTCCAGGTCCCC-TAGGCCA-AGAT-GGTATTTCT-ATGCT-----TAA-T-T-CA--TATGCTGCCAA---TTGT-TT--CATT--GGCGCATATT------ACAAAAAT-TCA-TTTGTTG---A-TAG---ATATTAA-ANGG-CA-T-ACAAAAATTCATTTGTTGATGGCCATGACAAACAAGCCAAACAT-AATATGAC-TT-GTGTTTTTCTTGGATA--TT--GGGC-ATATTTGATAACCTATAGCTTGTAGCCAATAGGTGGTTTCTGTTTTCT---TTTGTCTATCGCTG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|5 : ctagTT-AATAACCTAGTTTAG-G-CCAATA--GGATGGTGAT-----CTGTTTTCCTTTGCGTCT-GT-CGTCGTGCGA-AGCCTTCGATAAT-TT-TCTCG--C-AAATCATGAGGCGCTATTATCCA--CTTATGGA-TAAAC--CGTGGTT-ATTCTAGCGCCAACTTAAATTTAATTATA--TTT---TCAGTGTC-CTAAAGCTTTATAAGGGGTACGGG--AAA--CAAATTAAT-AC----TCG--GGGTT-CGATCCTTCTCATGTTTTGT--GCATCT-GCCGGCA-TTGTC-AA-ATCAATCT-CCTTCCA-TTT-GTC-GAA-CTTCCAAAGAG--CAGCAGACGT-TCAATAATTAC------------TTTGTAGAGGCGAATATAGATTACCCACTTC-CTCCTC-CCCTGCAT--TTAAGGTTTGGTAGCT--GGTATCTTTGGTCTTTTATAT-TTTTAT-CTTTCAGCGTTCA---ATTGCAATATTGGTTGTGTGCTAGTTCATCATTCAGGCGGCCTAG-GAGTGCGGCCAGGAACTGGAAATTGATGGACGGTTCGGAC-CTTG-A------TGTACC---T---
gi|6 : atttggcatcagctaGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CTTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-TGT--CAATATTGG-TGTGTG--TATTTATCATTC-AGC-GCCTAG-GAG-GCGGCCAGGAACTGG-AATTGATGGAC-TTTCGC-T-TGTG----------TACC---T---TGGAAGTTTCTGAGT-CGGG-ACGG-ATGAATTT--GC-AGTAGTTAG-CGTGTC-ACCAGGGGGCACTGTTTTATTTTTCAGGT-CCC-CTGGTCAGAGATTGGTA-TTCT--T-CT-----TAA-T-TATT--TATGCTGCCAA---TTGT-TTTTCA-TC-GGTGCA---TGCATATACAAAAAT--CA-TTTGTTGT-TA-TAA---TTATTAACATGGCCA-TGACTTATCG-CAC---------GCCA--------------AACAC-TACATGGC-TCTGTCTTTTCT-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTATCGTCG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|7 : C---T---TGG---TTTCTGA-T-CGGG-CTGGTAT-GATTTT-GC-A-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGAT-----TAA-T-T-TG--TATGCTGTCAA---TTGT-TT--CACT--GACGCG---T------AAAAAAAA-TCA-TTTGTTGTGTAATAA---ATATTAA-ATGGCCT-AAACAAAA---CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-A--TTTTGAGC-ATATTTGATAACTTA------GTAGCTAATAGGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GA-GAAAATGT-TCGCAAAA
gi|8 : C---T---TGG---TTTCTGA-T-CGGGACTGGTAT-GATTTT-GC-A-TAGTTTG-C-TGTC-ACC-AGGGGCAATGGGTT--TTTTCAGGT-CCCCTGGGCCA-AAAT-G-TAA--AT-ATGAT-----TAA-T-T-TG--TATGCTGTCAA---TTGT-TT--CACT--GACGCG---T------ACAAAAAA-TCA-TTTGTTGTATA-TAA---ATATTAA-ATGGCCA-TAACAAA----CGC---------GCCA--------------AACAT-TATATGAC-TC-ATGTTTTTC-TTGG-ATTTT--GAGC-ATATTTGATAACTTA------GTAGCTAATAGGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GG-AGAAAATTGTCGCAAA
gi|9 : TAT-TGCT-CAGTTACTCA-GACGTACAGC---TATT------------TTT-GCC--TCGTATTACTTG-GTTAATTA-TATTGC-AAATTCATAGGG--TG---AAAAAT
gi|9 : acattcttagcggaAAGGGACATCTATAATTAAGTTAT-CCAGACCTTA-GTACATATTGTGACTGTCAG-GT-CCTAGAAGGGATAGAGTTCATTTATCTGACTT-GGGCA-ATGGTGTT-TTTATCAA-TACCTT-GTCTAAT-TCTTTGGAT-CATATTATCAA-ATCCAAAGTTA-CTTTAC--CAACATTT--CCTTGATAAGCA---TGtagtcttttgtgcgacataagggacatctataattaagttatccagaccttagtacatattgtgactgtcaggtcctagaagggatagagttcatttatctgacttgggcaatggtgtttttatcaataccttgtctaattctttggatcatattatcaaatccaaagttactttaccaacatttccttgataagcatgg
blockSeqs : . . . A . . A T A . T . T T T A A AA A GACAAAACGT C A A A A T A . . . . GCTT A GTTGCCTATTCA A C . ATT A T T ATC A ATCAAG . C TC TTA . T CC A A T TT . T G TTAGT T A AT A AAGTTAT C AC T AAC ACATTA AT TA A A G T ATA AA C AAAG GCC G CATA C C AGTTA T A TA A . . A A T . T G C A C T . T G A T . C . T . . C . . C A . G C A T A AG C TCA A T ACA . TG . . . . . C AG C G G CT . T TAG C T . . . TA TGTTG TA T . C TGGGCAC TTCTTTCTT G CTGGCTGCATATT CG C TT A TG T TA . T CG TAGT A A T A T T A ATTC CT TA GGTTT TT AG AGGGCCAA T C TAA ATT T T TTTTGTT CGC C CA TC G TGAAT AT T TG C CA A CCA ACTTAAC A TATGTTA C AG A G CGA A T T TA TATGCCCAATAGC A GA GCATG C G TA CG TT C C A CTTCGAT C G CG ACA TG CGCTA AC T AA A TG G T C TA TT T AT TT AAT CCCCC GCT TAAG CG AA CAAATTAATAC GA G . T TCA TG T CG T T C A AA A A TC A AGC TAC T ACTTTGTAGAGGCGAATATAGAT TTC C AT G G TG A GTCT A T A T A TGCA T T CTAGTTCAT AGGCG C . T C A TAC A T GG GGA . ACCTC A CAA AAT AAG G A A C T G T T A G . G T AG TT AT C C G G T G CT . TTAAA GTG A TT C TTTT A TT ATCG ATGCATAT TA T TG A TATT C T G AATTCATTTGTTGATG TGACAAACAAGCCA AA T TG T C TT TT . C TAGCTT T C AAA G . A .
blockSeqs : . A A . . . T . . . . . . . . ATTATCA . C . GTT . A T ATT G TCA . C T TT . T AC A . G . . . T . A . TGT TGTCAG CC . A . . . GTT . . GTC TC . CT . . A A . . . . . C . . . GC GC . TC T C C TG . . G TT . A T G . . A . TT TT A . AG TGGGCCAA . . . T . T GTT . . A AT . GAT AA T T . A A C ATA . TCAAGT . G T . . . T . TT TTTAGGCCAATA . C . T C TT . TT A . . AT . G CT A T GT . . A A . . C . . TT T T . A TGTC A . . A TTAACTAG . . . . T . . . . . C . GT . . . A . TAC . ATAAAAAAAAAAAATTGA CT . . . . . G CG . . . . . TCC T . GATTCGT AGC C . . T C AAC . T G GG . AA A . . . . . A T C . T T . . . . . AG TT . C C A . . G TT . . T . . C T . . TT ATATT T . TA . A . . G TCGCAC . T . G T T . . . C . T C . G . . .
blockSeqs : . . . T . A T . . . . . . . . . A A . . GT T . . . A C . . . T G . . . G . . T . CA CA G . A TGCT . . . T . T G . . A . . CG A . T . . . . . . GTGT . C C . . . T . TA TAGCCAATA . A . T T TT . T . . . GA . . . C T TC . . C A . . . . . TT T T . A T A . . . ATTTGCG . . . . A . . . . . A . G . . . A . TTC . TTATA G . . . . . G CG . . . . . CA T . TATTTAT AGC C . . C C AAC . T G GC . A A . . . . . . T C . T T . . . . . A GG . . . T . . G TT . . T . . C T . . TC AT T . A . A . . G ACGC . A . G . . . . . C . T C . A . . .
blockSeqs : . . . T . . . . . . . . . . . G . . A . . GT . . A AA . T . . T . . T . T T . . A A . . . . . TA T T . A . A . . . TTGCTTC . . . . A . . . . . A . A . . . A . TT . TCTGA C . . . . . G CT . . . . . C . . GA AT C . . C G TA . T G A . A A . . . . . . C T . . . . . . . . A GG . . . G . . G T . . T . . C T . . CT AT T . T . T . . A TAC . T . A . . . . . C . T T . A . . .
blockSeqs : G . . A A . . . . . CG T C . A . G . . . ATTACGG . . . . A . . . . . C . G . . . A . AA . . . . . . G . . . . . . . . CA . . . . . G A . . T G . . . . . . . . . T T . . . . . . . . A T . . . G . . . A . . T . . T T . . CT GT A . . . A . . A CAC . T . A . . . . . C . T T . . . . .
blockSeqs : . . . . . . . . . TT T C . A . A . . . GTTACG . . . . T . . . . . C . G . . . . . T . . . . . . . T . . . . . . . . . . . . . . . . . . A . . T . . T . . . C GT A . . . A . . . CGC . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A T . . . . . . . TTACG . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : GCC***** G****** *** A* C* NGT*** TA TGGCCAATA******* T* T* ATTACG************ TAC* TTNTA****************************** CG** TC** AAC G* A******* T* T** CT** GT********* T* T* ***
originalCons : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCTGGGCCAAGATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATT----GTTTCATCG-GCGCG-CAT-ACAAAAATTCAT-TTGTT---G-TATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T-GTGT--TTTTAT-TGGGATA-TTGG---GCAT-ATTT-GATAACCTAGT---A-G-CCAATA--GG-TGGTN-T-----CTGTTCTCTTTTG--TCTTGT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAA--T-------T-AC--G-TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAGAGC---AGACGT-T-AA-AATTAT------------TT----GA-------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-CAATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTANTTCT-ATGCT-----TAA-T-T-TA--TATGCTGCCAA---TTGT-TT--CANTC-GGCGCG---T------ACAAAAAT-TCA-TTTGTTGT-TA-TAA---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
finalCons : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTG----CTGTCTCCNGGGGGCACTG----TTTTTTC--CAGGTCCCCGCC-----GATGGTACTTCTAT-GCTT---AA--TTTATAT-GCTGCCAATTG------TCATCG---GCG-CATA-CAAAAC-TCAT-TTGTTNGT---ATAATTTATTAAA-T-GGCCA-TG-ACAAACACGCC--AAACA--TA--ATAT-GACTC-T-GTGT--TTTTAT-TGGGATA-TTGG---GCAT-ATTT-GATAACCTAGTGGCCAATA-------GG-TGGTN-T-----CTGTTCTCTTTTG--TCT-GT-CGTCGTG-GG-GGT----GA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--CT-ATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTTATTT-TA--TTTA--TAAG-----CTAAAG--TTA----GGTTA--GG--AAAATTACG------------TCG--GG-TT-CGA-CCTTCN--TGTGTTGT--GCATCT-GC--GCA-T-GTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAGAGC---AGACGTAC-AA-AATTTTNTA------------------------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTGCG--TTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTTC--ATATTGG-TGTGTG--GATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGACG-TTCGG-C-TGTGA-------TGTACC---T---TGG---TTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG-C-TGTC-ACC-GGGGGCACTGTTTT--TTTCCAGGT-CCC-TGGGCCA-AGAT-GGTAT-TCT-ATGCT-----TAAT--T-TA--TATGCTGCCAA---TTGT-TT--CACT--GGCGCGT---------ACAAAAAT-TCA-TTTGTTGT-TA-TAA---NTATTAA-ATGGCCA-TGACAAA----CAC---------GCCA--------------AACAT-NATATGAC-TC-GTGTTTTTC-TGGA-A--TT--GGGC-ATATTTGATAACCTA------GTAGCCAATAGGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AATAGTTTTGAAATAAATATTGTGCAAGTGTAAATAATTTA
Unaligned ( gi|21 ): ATGGTCATATTGGTGTGTGGACATTCA
Alignments
lowQualScore : 222 1 1 1 1 1 11 11 1 1 11 11 55555555555 1 1 1 1 1 1 222 2222 5555555555555555555555 1 1 2 111 2222222 1 2222 111 1 1 11 222 22222 1 1 11 44444444 1 11 1111111 222 11 1 1111 111 2222 11111 1 1 333333 11 2 222 1 1 1 1 1 1 1 1 1 222 1 1 11 1 1 1 1 1 2222 1 11 1 222 1 222 1 1 1 1 1 1 1 11 1 11 1 2222 1 11 1 1 22222 11 222 3333333 444444444 1 5555555555555 111 1 2 11 1 1 222 22222 1 1 1 5555555555 1 1 111 1 444444444444 1 222 1 2222 111 2 1 22222222 2 1 11 44444444 1 11 1111 1 2 1 2222222 1 1 2222 22222 1 22222 111 1111 1111111111 1 1111 7777777777777777777777777777777777777 1111 1 1111 2222 33333333333 11111 44444444444444444 111 111 1 1 1111 11 1111 1 1 222 11111 11 11111 33333333333 11 2222 1 2222222222222222 22222222222222 11111 11111 1 1 11 111111 111 111
lowQualScore : 111 5 5 5 5 5 1 1 1 88 1 88 5 3 99 7 7 11 7 77777777777 6 7 7 7 3 5 5 5 5 5 333 8888 7 0000000000000000000000 0 2 0 444 0 1 3 444 6 7777777 0 2 0000 0 000 0 3 99 3 3 1 55 333 1 1 77777 5 5 88 7 55555555 2 44 7 555 0 4444444 222 11 7 7 6 3 8888 999 6 6666 888 6 55555 3 3 222222 1 7 88 6 333 5 5 1 1 5 1 1 5 1 5 5 5 5 5 222 1 5 1 5 1 88 5 1 5 5 5 1 5 2 3333 1 1 5 88 5 111 1 5 111 5 22 5 5 5 5 5 5 11 6 6 5 66 5 1 3333 1 5 88 5 5 22 66666 88 1 111 1 1111111 000000000 0 3333333333333 444 0 33 0 11 6 33 0 0 000 0 44444 00 0 3 3 6 0 0 55 77 2 0 6 3 2 8888888888 5 0 777 3 0 2 2 666666666666 6 0 8 999 0 3333 66 777 7 7 0 6 3 3 33333333 3 7 0 33 77777777 66 8 0 11 3 7777 0 0 0 1111111 0 0 2 55 5555 88 00000 77 5 77 5 66 5 0 5 0 66 999 1 66 888 55555 111 0000 5 66 888 5 7777777777 55 66 5 5 66 5 66 4 66 0 2 5 0 0 0 888 5 5 77 1 5 2222 5 2222222222222222222222222222222222222 0 4444 8 99 6 3 99 1 0000 6 6 6 6 5 7777 1 5 00000000000 44444 2 6 6 3 1 999 6 3 99 33333333333333333 7 777 000 5 5 1 1 2 5 2 9 5 5 5555 5 55 77 0 8888 66 66 0 0 66 5 5 4 666 5 22222 11 5 5 66 0 888 66 5 44444 33333333333 66 5 5555 5 9999 5 0 55 5555555555555555 66 99999999999999 66666 5 77777 0 5 0 66 33 888 5 5 2 444444 3 999 0 66 000 8 000 5 5
lowQualScore : ... . . . . . . . . .. . .. . . .. . . .. . ........... . . . . . . . . . . ... .... . ...................... . . . ... . . . ... . ....... . . .... . ... . . .. . . . .. ... . . ..... . . .. . ........ . .. . ... . ....... ... .. . . . . .... ... . .... ... . ..... . . ...... . . .. . ... . . . . . . . . . . . . . . ... . . . . . .. . . . . . . . . .... . . . .. . ... . . ... . .. . . . . . . .. . . . .. . . .... . . .. . . .. ..... .. . ... . ....... ......... . ............. ... . .. . .. . .. . . ... . ..... .. . . . . . . .. .. . . . . . .......... . . ... . . . . ............ . . . ... . .... .. ... . . . . . . ........ . . . .. ........ .. . . .. . .... . . . ....... . . . .. .... .. ..... .. . .. . .. . . . . .. ... . .. ... ..... ... .... . .. ... . .......... .. .. . . .. . .. . .. . . . . . . ... . . .. . . .... . ..................................... . .... . .. . . .. . .... . . . . . .... . . ........... ..... . . . . . ... . . .. ................. . ... ... . . . . . . . . . . .... . .. .. . .... .. .. . . .. . . . ... . ..... .. . . .. . ... .. . ..... ........... .. . .... . .... . . .. ................ .. .............. ..... . ..... . . . .. .. ... . . . ...... . ... . .. ... . ... . .
lowQualScore : 000 0 5 5 5 0 0 0 0 55 0 00 5 3 33 3 3 00 3 77777777777 7 3 3 3 3 5 5 0 5 5 333 3333 3 7777777777777777777777 0 5 0 888 0 2 2 000 5 8888888 0 5 8888 2 222 0 2 88 2 3 0 77 333 0 0 00000 5 5 55 3 00000000 0 00 3 333 7 3333333 777 00 3 3 7 3 3333 777 7 0000 777 7 00000 3 3 777777 0 3 33 7 333 0 5 0 0 0 0 0 0 0 0 5 5 5 0 000 0 5 0 0 0 55 0 0 0 0 0 0 0 5 5555 0 0 5 00 0 000 0 5 000 5 00 5 0 0 0 0 0 00 7 7 0 55 5 0 5555 0 5 00 5 5 00 55555 55 0 555 0 0000000 000000000 0 0000000000000 000 0 55 0 22 5 55 0 0 888 2 55555 55 0 2 2 5 0 0 88 00 5 2 5 2 5 0000000000 5 0 555 2 0 5 5 000000000000 5 0 8 888 0 5555 88 777 3 3 7 7 7 3 00000000 3 3 0 00 00000000 22 8 0 00 2 2222 0 0 0 5555555 0 0 5 00 8888 88 00000 99 7 11 0 99 0 0 0 8 11 999 4 11 000 00000 111 6666 0 99 888 0 9999999999 44 99 0 0 99 9 11 4 11 0 5 0 4 1 1 333 7 7 99 4 7 1111 7 1111111111111111111111111111111111111 8 0000 0 22 7 3 22 0 0000 7 7 7 7 7 1111 4 7 22222222222 88888 5 7 7 7 0 555 7 2 22 00000000000000000 3 555 000 7 7 4 4 2 0 4 4 0 0 6666 0 88 22 4 0000 99 99 0 0 44 0 0 3 333 7 55555 99 0 0 99 2 888 99 0 00000 88888888888 66 0 2222 0 8888 0 0 22 1111111111111111 99 44444444444444 66666 0 99999 0 0 0 99 88 888 0 0 5 444444 2 444 2 99 000 9 000 7 7
consensus : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTGCTGTCTCCGGGGGGCACTGTTTTTTCCAGGTCCCCTGGGC-C--GATGGTACTTCTAT-GCTT---AATTTATAT-GCTGCCAATT----G--T--CATCGGC-GCATACAAAA-TTCAT-TTGTTGGTATAATTTATTAAA-T-GGCCATGACAAATACGCCAAAC-TAATAT-GACTC-TGTGT--TTTTATTGG-ATATTGGGCATATTT-GATAACCTAGT---GGCCAATAGG-TGGTN-TCTGTTCTCTTTTG--TC-TGT-CGTCGTG-GG-GG----TGA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--C-TATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTT-ATTTTA--TTTA--TAAG-----CTAAAG--TTA----GGTT-A--GGA---AAA-TT-A-----C--G-TCG--GGTT-CGA-CCT--TCATGTGTTGT--GCATCT-GC--GCA-TGTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAG-AGCAGACG-TACAA-AAT---T-T------------TTGA---------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-C-ATATTGG-TGTGTG--G--ATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---TTG---GTTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG----C-TGTC-ACC-GGGGGCACTG---TTT--TTTTC--CAGGT-CCC-T-GGGCCA-AGA-TGGTACTTCT-ATGCT-----TAA--T-T-TA--TATGCTGCCAA---TTG--T-TTCA--CT-GGCGC------G----TACAAAAAN-TCA-TTTGTTGT---TA-TAA---NTATTAA-ATGGCCA-TG-ACAAA----CAC---------GCC--A--------------AACAT----NATATGAC-TC----GTGTTTTTC-TG-GA-A--TT--GG---GC-AT-ATTTGATAACCTA------GTA-G-CCAATA--GGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
Reference ( family-123 ) : GGCCACTCTAGTCCATTAATTTTCACAAAGCCTGAAAATTTAATTCTTGTGGGTTTCAATTAATATCTTTTGTCTATNTTATTTAGGTTCCATCATCCATNGGNTCAATCANTTTGCACTTGCATATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTTATGGCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------T-GTACCCTACAATTCAATTTGTTTGTCAAGTCGCATAGT-TCCAGATATAATTGTTTATTCAATTGTGGTGGAAACAACATTGGTCAATCAAGCAACA---TGGGGGGGGGGGGGGGGGGG----GTCAAAAAATTCTTCAAATCCAC------GTTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTNCTATTGC-AAATTCAGANGGCCTG---AAAAATGCTNGCTNCCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGGGAGGGGGCATCTATAATTA-----T-CCTGACATTACGTACAAATCGNCGC-GCCTT-GT-T-TAGAAGGGTTGGAGTTCATTTATCTGACTTGGGGAA-ATAGCG-T-TTTATCAA-TACATT-GANTAATGCCTTTGGAT-CAT-TTATCAA-GT-TAA----A-CTTTNCAACAACATTT--CCTTGAT-AGCA---TGTGGGTGCTTTTTGTTGACCAANTTGNTGGCACTTNGTNAGTAAGCCAANTTACTTGCATTCATTGTTAACCATTTACATGCACACGGTTCTTAAGTTCATATATTTTAATTTGNGTCTNGCCGNCATTTGTGCTGAAAGTTTGGNCAGTGCCACTGGCACTACATTTCCNATTGGTGATTGCTCGTCTGGTACACCAGTTGTAAGTNTNATATTAGGCACCAGTTTCAGTGCTTCCNATTTACTATACATGCGAATTTGAATANNGTGATTTTGTGACTTTAGGCACGCAATTGTGCGCTCCTCTTCATTTCGTTGAGAAAAATTCACTGGGGTGCAAAATGGCANTATTTACTATTNTGATTTAGCTTTGTCTNGTTACCAGTAGTTTTGATTTAGACACCGTNNTCTTCCTTGTTGACCTCTAATTTNGTAAAANTTTGGGCACCACTGGGC---------TGC-AAAATTC--GC--------CGC-C-CCA-TTCAG-TGT-TGGCGGATGG-GTCA-AT-T-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTGCTGTCTCCNGGGGGCACTGTTTTTTCCAGGTCCCC---GC-C--GATGGTACTTCTAT-GCTT---AATTTATAT-GCTGCCAATT----G--T--CATCGGC-GCATACAAAA-CTCAT-TTGTTNGTATAATTTATTAAA-T-GGCCATGACAAACACGCCAAACATAATAT-GACTC-TGTGT--TTTTATTGGGATATTGGGCATATTT-GATAACCTAGT---GGCCAATAGG-TGGTN-TCTGTTCTCTTTTG--TC-TGT-CGTCGTG-GG-GG----TGA-AAT-TTGTCGCG-AC-AAATAAT-AGGTG---TTATCCA--C-TATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTT-ATTTTA--TTTA--TAAG-----CTAAAG--TTA----GGTT-A--GGA---AAA-TT-A-----C--G-TCG--GGTT-CGA-CCT--TCNTGTGTTGT--GCATCT-GC--GCA-TGTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAA-CT--CAAAGAG-AGCAGACG-TACAA-AAT---T-T------------TNTA---------------TACCCAC--C-CTCCCT-CCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-GGTT-C-ATATTGG-TGTGTG--G--ATTCATCATTC-GGC-GCCTAG-GAG-GCGGCCANGAACTGG-AATTGATGGAC-GTTCGG-C-TGTG-A------TGTACC---TTG---GTTTCTGA-T-CGGG-CCGGCAT-AATTTTTGC-A-TAGTTTG----C-TGTC-ACC-GGGGGCACTG---TTT--TTTTC--CAGGT-CCC-T-GGGCCA-AGA-TGGTA-TTCT-ATGCT-----TAA--T-T-TA--TATGCTGCCAA---TTG--T-TTCA--CT-GGCGC------G----TACAAAAAT-TCA-TTTGTTGT---TA-TAA---NTATTAA-ATGGCCA-TG-ACAAA----CAC---------GCC--A--------------AACAT----NATATGAC-TC----GTGTTTTTC-TG-GA-A--TT--GG---GC-AT-ATTTGATAACCTA------GTA-G-CCAATA--GGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCG---TGGG-GG-TGAAATTTGTCGCAAAATAA
gi|1 : GGCCACTCTAGTCCATTAATTTTCACAAAGCTTAAAAATTTAATTCTTGTGGGTTTCA-TTAATATCTTTTGTCTATTTTATTTAGATTCCATCATCCATGGGCTCAATCAGTTTGCACTTGCA-ATACAATCAAGATCACCTT-CATGCAATTCATTGTACCATTTT---GCATGGGAAGAGGGGTAATGGTATGGGAAAAC---------TTGTACCCTACAATTCAATTTGTGTTTCAAGTCGCATAGT-TCCAGATATAATTGTT-ATTCA-TTGTGGTGGAAACAACATTGGTCAATCAAGCAACACACTTGGGGGGGGGCGGGGGGGC----TCCAAAAAATTCTTCAAATCCACTTTACAGTTA-----TTAATAGTTAT-TGCTTCAAC-ACTTCCTGAT-ACAGCTATTATTGGT-CCCA--TATTTTGCCGTT-GCATT-CTTGGATAAATTCAT-TTGC-AAGTTCAGAAGACCTGTGAAAAAATGCTGGCTCCTAG-----ATT-AACAGTTATTAAA-TC--TTTCAGGGAGGGGGCATCTATAATTA-----TGCCTGATATT-CGTACAAATCAACAC-GCCTT-GT-T-TAGAAGGGTTGG--TTCATTTATCTGACTTGGGGAA-ATAGCA-T-ATTATCAAATACATT--AATAATGC-TTTGGATTCAT-TCATTAA-GT-TAA----AACTTTCCAACAACATTT--CCTTGATCAGCAATCTGTGGGTGCTTTTTGTTG-CCAACTTGGTGGCACTTGGTTAGTAAGC-AATTTA-TTGCAT-CATTGTTAACCATTTACATGCACATGGT-CTTAA-TTCATATATTTTAATTTAGGTCTGGCCGGCATTTGTGCTGAAAGTTTGGGCAGTGCCATTGGCACTA-ATTTTCCATTGGTGATTGCTCTTTTGGTACACCAGTTGTAAGTTTGAT-TT--GCA-CAGTT---GTGCTTTCTATTTAC-AT---TGTGAATTTGAATAATGTAATTTTGTGACTTTAGGCACGCAATTGTGCGTTCCTCTTCATTT-ATTGAAAAAAAAT-ACTGGGGTGCAAAAT-GCAG-ATTTACTATTGTGATT--GCTTTGTCTGG-TACCAGTAGTTTTGATTTAGACATTGTGCTCTTCCT-----ACTTC--ATTTGGTAAAAATT-------CACTGGGC---------TGC-AAAATTT--GC--------CGC-C-CCA-TTCAG-TGT-TGG-GGATGGAGTCA-ATCT-ACGTTGTCCA---T-GCCC-CATTTGGCAT-AATTTTG-CATAGTTTGCTGTC-CCGGGGGGCACTGTTTTTTCCAGGTCCCCTGGGCAA--GATGGTACTTCTAT-GCTT---AATTTATAT-GCTGTCAGCT----GTTT--CATCGGCGGCATCAAAAA-TTCAT-TTGTTG--ATAATTTATTAAATT-GGCCATGACAAATACGCCAAAC-TAATAT-GACTCATGT-T--TTTTATTGGGATATGGGGCATA-TT-GAT-ACCTAG--------AAGA-G-TGGTT-TCTGTTCTCTCTTG--TCTTGT-CGTCGTG-GG-GG----TGA-AAT-TTGTCGCATAC-AAATAA--AGGTG---TTATCCA--C-TATGGA-T-AAC--C-TAGTT-ATT-TAGCGCAAA-T--AATTT-AGTTCA--TTTA--TAGG-----TTAAAG--TTA----GGTT-T--GG----AAA-TT-G-----C--G-TCG--GGTTGCGG-TCT--TCAAGTATTGT--GCATCT-GC--GCA-TGT-CAG-A--AAACTTCCTTTCTCTTT-A-C-AAA-CT--CCAAGAG-AGCAGACG-T-TAA-AAT---TAT------------TTGA---------------T-CCCAC--C-CTCCCT--CCTGTAT--TTAA-GTTTGGGAGC---GGTTGCTTTG--C--TT-TAA-TTTTAT-A-TTCAGCG-TCAT-GGTT-CAATATGGA-TGTGTG--G--G------ATTA-GGC-G-CTAGAGAG-GT--TCAAG-ACTGG-AA-TGATGGAC---TCAG-CATGTG-GCAGCCTTGT-CC---TTG---GTTTATGA-T-TGAG-CTGGC-T-AATTTTTGC-A-TAGTTTGT---C-TGTC-ATC-GGGGGC-CTG---TTT--TTATC--CAGGT-CCC-T-GGGCCA-AGA-TGGTACTTCTCATGCT-----TA-----T-TA--TATGCTG-CAG---CTG--T-TTCA--ATCGGCGC------A-----ATAAAAA--TCA-TTTG-TGT---T--TAA---TTATTAA-ATGGCCA-TG-A-AAA----TAC---------GCC--A--------------AACAT----AATATGAC-TC----ATGTTTTTA-TG-GA-A--TT--GG---GCAAT-ATTTGATAA-CTA------G-A--------A--GGTGGTTTCTGTTCTCT---TTTGTCTGTCGTCGGAATGGG-GGTTGAAATTTGTCGCAAAATAA
gi|10 : CT-----TAAATT-T-TA--TATGCTGCAAA---TTG--T-TTCA--CG-CGCGC------GCCATCACAAAATC-TCA-TTTGTT-TGAATA-TAA---TTA--AA-ATGGCCACTGCACACG----CAC---------GCCCAA--------------AACACTTAACACATGGC-TCTCAAGTTCTTGTC-TGAGA-AAGTT--GGCGAGC-ATAATATGATAACCTA------GTATGCCCAATAGCGGTGGTCTc
gi|11 : AATAAT-AGGGT---TTATCCAACT-TATGGAATAAAC--C-TAGTTTATT-TAGCGCAAATT--AATTT-ATTTTATTTTTAATTAAGCCCCCCTAAAA--TTA----GGTTAA--GAA---AAA-TTAA-----CTAG-TCG--GGTT-CAA-CTT--TC-TGTGTTGT--GCATCT-GC--GCATTGTCCAGAATCAATCTTCCCTTCACTTTAA-C-GAA-TT--CAAAGAG-AGCAGACG-TACAA-AAT---T-T------------gcatgctgctgcgtttagtcttat
gi|12 : tACTGGAC---------TGC-AAAATT---GC--------TGC-T-CCACTTTAGATTC-TGGTGAATAG-GTCATAG-G-ACATCGGTAA---G-GAAC-G--TTGACAC-ATTTTTG-CATAGATTGCTGTCTCCTGTGGGTACTACCTTTTCT------------------ATGACAC-TCTGTCACTT---GATTTTTTT-TCT-CCGATT----G------ATCAGC-GCATA--------CAT-TTGTTCG-ATAATT
gi|13 : GGT----TTATCCA--C-TATGGA-TAAAC--C-TGGTT-ATT-TAGCGCAAATT--AATTT-ATTTTA--TTTA--TAAG-----CTAAAA--TTA----GGTT-A--GGA---AAG-TT-A-----C--G-TCG--GGTT-CGA-CAT--TCTTATGTTGT--GCATCT-GC--GCA-TGTCCAG-AT
gi|14 : agATCAAGATCACCTTTCATGCAATTCATT-TACTATTTTATGGCATGGGAAAAGGGGTA-TGATATGGGAAAACGACAAAACGT-GTACCCTACAATTCAATTTTTTTGTCAAGTCGCATAGT-TCCAGATATAATT
gi|15 : AACA---TGGGAGGGGGGGGGGGGGGGGCTTGTCACGA------TCATTTCTCT------GTTGCCTATTCA----TTATATG-------TATTTCATTATTTCAGCATCCATTAGTATC-AAGTATTT-G--------A---CTTG-A-AAATTCCTA
gi|16 : CGCAAATT--AAT---ATTTTA--TTTA--TAAG-----CTAAAA--TTA----AGTT-A--GGA---AAATTT-G-----C--G-ACGGAGGTT-CGA-CCT--TCATGTGTTGT--GCATCT-GC--Gcg
gi|17 : GCAT-AATTTT-GC-A-AAGATTAATTCC-TGTC-TTTTGGGGATTCTGGTTTTT--TTTTCTTCAGGC-CCC-TAGGGCCA-AGA-
gi|18 : taaGTTGT--GCATCT-GC--GCA-TGTCAAG-ATCAATTTTCCTTTCACTTT-G-C-GAA-TT--C--GGAG-AGCAGACGTTAAAA-AGT---T-T------------
gi|19 : AC--C-TGATT-ATT-AAGCGCAAATT--AATTT-ATTTCA--TCTA--TAAG-----C
gi|2 : GGCCACTCTAGTCCATTAATTTTCACA---TCTGAAAATTTAATT-TTG-GGGTTTCAATTAATATCTTT-GT-TATATTATTTAAGTTCCATCATTCATTGGATC--TCATTTTGCA--TGCATATACAATCAGGATCACTCG-TATGCAATTCATTA---CATTTTATGGC-TGGGA-----GGTAATGGTATGGAAAAAC---------T-GTACC-TACA-TTCAATTTGTTTGTCA-GTCAC-TAGTATCCATGTATAATTGTTTATTCAATTGTGGTGGAAACAACATTG-TCA-TCA-GCAACA---TGGGGGGGGGGGGGGGGAGG----GTCAAAAAATTCTTCAAATCCAC------ATTA-----TCA----TTAT-TGCT-CAATTACTTC-TAATTACAGCATTTATTGGT-TC-A--TATTT-GCC--T-GCATT-CTTG-ATAAATTACTATGACAAAATTCAGATGGTTTG---AAAAATGCTTGCTGTCAGTTAGTATTTAACAGTTATTAAAATCATTTTCAGAG-GGAGGCATCTATAAGT------T-TCTGA-ATTACG-ACAACTAACCGC-ACATTAGTAT-TAGAAAGGT--GAGTTCATTTATCTG-CTTGGGAAATATAGCA-TATTTATC---TA-ATTAAAGTAATGCCTTTG--T-C-T-TTATCAACGT-TAC----A-CTTTTCAACAACATTTTACCTTGAT-AGCA---TGT-GGTGCTTTTTGTTGACCAAATTGTTGA-ACTTTGTGAGTAAGCCAAATTACTTGCATTCATTGTTAACCATTT-CATGCACACGGTTCTTAAGTTCATA-A-TTTAATTTGTG-CTCG-CGTCA--TGTGCTGAAA-TTTGGCTA-TGCCACT-GCACTACATTTCCAATT-GTGATTGCTTGTCTGGTAC-C--GTTGTAAATATTATATTAGGCACCAGTTTCAATGCTTCTAATTTACTATACATGCGAATTTG-ATATGGTGA-TTTGTGATTTTA-GCAC-CAATTGTGCGCT-CTCTT-ATTTCGTTG---AAAATTCACT--GGTGCAAAATGGCACTATTTAC-ATTTTGATTTAG-TTTGTCTCGTTAC--GTAG-TTTGATTTAG-CACCATTATCTTTCTTGTTGACCTCTAATTTTGT---ACTTTGGGCACCATTGTGCTTCTTTCTTTGCGAAAATTCTGGCTGCATATTCGC-CGCCA-T--AGTTGA-TGGCGGA--G-GTCA-AT-T-ACGTTGTCCATAGT-GTTCACATTTG--AT-AATTATGTCATAGTATGCTGT-TC---GGGGCACTGTTTTTTCCAGTTCCCT---GC-T--GATGGTAC-TCTAT-GCTT---AA--TATAT-G-TGCCAA------G--T--CATCGAC-GCATACAAAA---TAA-TTAT--GTATAAATTATTAAA-TGGGCCATG-C-AATACCCCTAAC----TATAGACTC-TATGTTATTTTATTGG--TATTGGGCATATTT-GA-AACCTAG--------A--AGG-TGGTA-TTTG-TCTTTTTTT--TC-TGTCCGTCGTG-GG-GT----TAT-AATCTTGT--CG-ACAAAATAAT-AGTTC---TT-TACA--C-T-TGGC-T-AAC--C-TAGTTCATT-TAGC-CAA--T--AATTA-G--TCA--TTT---TAGGT----TTAAAG--TTA-----GTT-A--GGA---AAA-TT-G-----CTTC-TCG--GGTT-CTG-TCT--TCAAGTATTGT--GCATCT-GC--G-A-TGTCAAG-AACA--TTTCCTTTCTCTTT-A-CAAAA-CT--CACGGAG-AGCA-ACG-T--AA-AAT---T-T------------TATA---------------TAACCAC--G-CT-CCT-CCCT-TAT--TTAA-GTT---TAGCTTGGATTGCTT-----GCTT---A-TTTTATAATTTC-GCT-TCCTAGGTTCC-ATA-TGG-CGTGTG--G--ATTCGTTAT------------G-GAA-A-GGTCAAAA---------TGGTGGAC-GTTC-A-C-TGTG-ACCTC--TGT-CC---TTG---GT---TAA-TATGGT-ACGGTAT-A---TTTGC-A-TGTTTTG----C--GTCTATC--GCGGCACTG-----T--TTTTC--CA-GC-CCC-T--GGCCA-AGA-TGGTACTTCT-A-GCT-----TAAG-TGT-TATTTATGCTGCCAA----CG--TATTCAATCG-GGCGC------A----TACAAAAATATCATTTTGTTG----TA-TAATATTTACTAA-ATGGCCATTG-ACAAA----TAC---------GCC--A--------------A--------TATATGAC-TT-------TTTTTA-TG-AT-A--TT---G---GC-CT-ATTTGATAA--TA------G-------AAT---GGTGGTTTTT-TTCT-T---TTTGTCTGTCGTCG---TGGG-GA-TGAAATTTGTCGCAA
gi|21 : AT-GGT--C-ATATTGG-TGTGTG--GACATTCA
gi|3 : AGAAAAATTCACTGGGCTGCAAAAT
gi|3 : tgtCACTGGGC---------TGC-AAAATT---GT--------CGCGC-CCA-TTCAA-TGTGTGGCGGATGG-GTCA-AT-CGACATTGTCTA---TTGCCC-CATT--GCATTAATTTTG-CATAGTTTGCTGTCTCCAGG------T-TTTTTTCCAGGTCCCCTGGGC-CAAGATGGTATTTCTAT-GCTTTAAAATTCATATTGCTGCCAATTTTTTG--TTTCATCA-C-GCATACAAAAATTCATGTTGTTGATATA---TATTAAA-T-TGCCATGACAAACACGC-AAACATAATAT-GACTC--GTGT--TTTTCTTGC-ACATTGGGCATATTTTGATTACCTAGT---AGCCAATACG-TGGTT-TCTGTTTTCTTA-A--TT-TGTACGTTGTG-GAAGG----TGA-AAT-TTGTCGTA-A---ACTAAT-AGG-G---TTATCCA--C-TATGGA-TAAAC--T-TGGTT-ATT-TAGCGCAAATT--AACCG-ATTTTA--TTTA--TAAG-----CTAAA---TTA----GGTT-A---GA---AAA-TT-A-----C--G-TCG--GG-T-CTA-CCT--TCATGTG-TGTTGGCATCT-GC--GCA-TGTCCAG-ATCAGTCTTCA-TTCACTTT-G-C-GAA-TT--CAAAGAG-AGCAGACG-TACAA-AAT---T-T------------CTGA---------------TACCCAC--C-CTCCCTCCCCTGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CGTTT-TAATTTTTAT-CTTTCAGCG-TCAT-GG-T-C-ATATTGG-TGTGTG--G--A-----CATTC--AT-GCCTAG-GAG-GCGGCCACGTA-TGG-AATTGATGGAC-GTTC-G-C-TCTGAA------TGTACCCAATTA---GTTTCTTA-T-CGGA-CTGGCAT-AA--TTTGCAA-TAGTTTG----C-TGTC-TCC-AGGGGCACTG---TTT--TTTTC--CAGGTCCCC-T-GGGCCA-AGA-TGGTATTTCT-ATGCTTTAAATAA--T-T-CA--TATGCTGCCAATTTTTG--T-TTCA--C--GGCGC------A----TACAAAAAT-TCA-TTTGTTGA---TA-TAT---ATTTTAA-ATTGCCA-TG-ACAAA----CAC---------GCC--A--------------AACATA---AATATGACTTC----GTGTTTTTCTTG-CACA--TT--GG---GC-AT-ATTTGATTACCTA------GTA-G-CCAATA--CGTGGTTTCTGTTTTCTAAATT----TGTCGCTG---TGGGAGG-TGAAATTTGTCGCAAAATAAtgtcgcgcccattcaatgtgtggcggatgggtcaatcgacattgtctattgccccattgcattaattttgcatagtttgctgtctccaggtttttttccaggtcccctgggccaagatggtatttctatgctttaaaattcatattgctgccaattttttgtttcatcacgcatacaaaaattcatgttgttgatatatattaaattgccatgacaaacacgcaaacataatatgactcgtgtttttcttgcacattgggcatattttgattacctagtagccaatacgtggtttctgttttcttaatttgtacgttgtggaaggtgaaatttgtcgtaaactaatagggttatccactatggataaacttggttatttagcgcaaattaaccgattttatttataagctaaattaggttagaaaattacgtcgggtctaccttcatgtgtgttggcatctgcgcatgtccagatcagtcttcattcactttgcgaattcaaagagagcagacgtacaaaatttctgatacccaccctccctcccctgcatttaagtttgtagctggttgctttgcgttttaatttttatctttcagcgtcatggtcatattggtgtgtggacattcatgcctaggaggcggccacgtatggaattgatggacgttcgctctgaatgtacccaattagtttcttatcggactggcataatttgcaatagtttgctgtctccaggggcactgtttttttccaggtcccctgggccaagatggtatttctatgctttaaataattcatatgctgccaatttttgtttcacggcgcatacaaaaattcatttgttgatatatattttaaattgccatgacaaacacgccaaacataaatatgacttcgtgtttttcttgcacattgggcatatttgattacctagtagccaatacgtggtttctgttttctaaatttgtcgctgtgggaggtgaaatttgtcgcaaaataa
gi|4 : tgtagaaaaattG---TTATCCA--C-TATGG--TAAACTGC-TG-TT-ATT-TAGCGCAAATT--AAT---ATTT-A--TTTA--TAAG-----CTAAAA--T-A----GGTT-A--GGA---AAA-TT-A-----C--GGTCG--GGT--CGA-CCT--TCTTGTGTTG---GCATCTTGC--GCA-TGTCCAG-ATCAATCTTCCTTTCACTTT-G-C-GAAATT--CAAAGAG-AGCAGATA-AAAAA-AAA---A-TAAAAAAAAAAAATTGA---------------TACCCAC--CTCTCCTT-CCCTGTATATTTAA-GTTT-GTAGCT--G-TTGCTTTG--CGTTT-TAA-TGATAT-CTTTCAGCG-TCAT-GGT--------------------------CA-CATTC-AGC-GCCTAG-GAG-GTGGCCACGTACTGG-AGTTGATGGAT-GTTCGG-C-TG-G-A------TGTACCTAATTA---GTTTCCTA-T-CGGGACTGGCAT-AA-TTTTGC-A-TAGATTG----C-TGTC-TCCAGGGGGCACTG----TT--TTTTC--CAGGTCCCC-T-AGGCCA-AGA-TGGTATTTCT-ATGCT-----TAA--T-T-CA--TATGCTGCCAA---TTG--T-TTCA--TT-GGCGC------ATAT-TACAAAAAT-TCA-TTTGTTG-----A-TAG---ATATTAA-ANGG-CA-T--ACAAAAATTCATTTGTTGATGGCC--ATGACAAACAAGCCAAACAT----AATATGAC-TT----GTGTTTTTCTTG-GATA--TT--GG---GC-AT-ATTTGATAACCTATAGCTTGTA-G-CCAATA--GGTGGTTTCTGTTTTCT---TTTGTCTATCGCTG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|5 : ctagTT-AATAACCTAGTTTAGGCCAATAGGATGGTGATCTGTTTTCCTTTGCGTC-TGT-CGTCGTGCGA-AGCCTTCGATAAT-TT-TCTCG--C-AAATCATGAGGCGCTATTATCCA--CTTATGGA-TAAAC--CGTGGTT-ATTCTAGCGCCAACTTAAATTTAATTATA--TTT---TCAGTGTC-CTAAAGCTTTATAAGGGGT-ACGGGAAACAAA-TT-AATACTC--G---G--GGTT-CGATCCTTCTCATGTTTTGT--GCATCT-GCCGGCATTGT-CAA-ATCAATC-TCCTTCCA-TTT-GTC-GAA-CTTCCAAAGAGCAGCAGACG-TTCAATAATTACT-T------------TGTAGAGGCGAATATAGATTACCCACTTC-CTCCTC-CCCTGCAT--TTAAGGTTTGGTAGCT--GGTATCTTTGGTCTTTTATAT-TTTTAT-CTTTCAGCGTTCA---ATTGCAATATTGGTTGTGTGCTA--GTTCATCATTCAGGCGGCCTAG-GAGTGCGGCCAGGAACTGGAAATTGATGGACGGTTCGGAC-CTTG-A------TGTACC---T
gi|6 : atttggcatcagctaGCAT--TTAA-GTTT-GTAGCT--GGTTGCTTTG--CTTTT-TAA-TTTTAT-CTTTCAGCG-TCAT-TGTC-A-ATATTGG-TGTGTG--T--ATTTATCATTC-AGC-GCCTAG-GAG-GCGGCCAGGAACTGG-AATTGATGGAC-TTTCGC-T-TG----------TGTACC---TTGGAAGTTTCTGAGT-CGGG-ACGG-ATGAA--TTTGC-AGTAGTTAG----CGTGTC-ACCAGGGGGCACTG---TTTTATTTTT--CAGGT-CCC-C-TGGTCAGAGATTGGTA-TTCT--T-CT-----TAA--T-TATT--TATGCTGCCAA---TTGTTT-TTCA--TC-GGTGCATGCATA----TACAAAAA--TCA-TTTGTTGT---TA-TAA---TTATTAACATGGCCA-TG-ACTTATCG-CAC---------GCC--A--------------AACAC----TACATGGC-TCT---GTCTTTTCT-TG-GA-A--TT--GG---GC-AT-ATTTGATAACCTA------GTA-G-CCAATA--GGTGGTTTCTGTTCTCT---TTTGTCTATCGTCG---TGGA-GG-TGAAATTTGTCGCAAAATA
gi|7 : C---TTG---GTTTCTGA-T-CGGG-CTGGTAT-GATTTT-GC-A-TAGTTTG----C-TGTC-ACC-AGGGGCAATG---GGT--TTTTT--CAGGT-CCCCT-GGGCCA-AAA-TG-TA-A-AT-ATGAT-----TAA--T-T-TG--TATGCTGTCAA---TTG--T-TTCA--CT-GACGC------G----TAAAAAAAA-TCA-TTTGTTGTG--TAATAA---ATATTAA-ATGGCCT-AA-ACAAAA---CGC---------GCC--A--------------AACAT----TATATGAC-TC----ATGTTTTTC-TT-GG-A--TTTTGA---GC-AT-ATTTGATAACTTA------GTA-G-CTAATA--GGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GA-GAAAATGT-TCGCAAAA
gi|8 : C---TTG---GTTTCTGA-T-CGGGACTGGTAT-GATTTT-GC-A-TAGTTTG----C-TGTC-ACC-AGGGGCAATG---GGT--TTTTT--CAGGT-CCCCT-GGGCCA-AAA-TG-TA-A-AT-ATGAT-----TAA--T-T-TG--TATGCTGTCAA---TTG--T-TTCA--CT-GACGC------G----TACAAAAAA-TCA-TTTGTTGTA--TA-TAA---ATATTAA-ATGGCCA-TA-ACAAA----CGC---------GCC--A--------------AACAT----TATATGAC-TC----ATGTTTTTC-TT-GG-A--TTTTGA---GC-AT-ATTTGATAACTTA------GTA-G-CTAATA--GGTGGTTTTTGTTCTCT---TTTGTCT---GTTG---TGGA-GG-AGAAAATTGTCGCAAA
gi|9 : TAT-TGCT-CAGTTACTCA-GACGTACAGC---TATT------------TTT-GCC--TCGTATTACTTG-GTTAATTA-TATTGC-AAATTCATAGGG--TG---AAAAAT
gi|9 : acattcttagcggaAAGGGACATCTATAATTAAGTTAT-CCAGACCTTA-GTACATATTGTGACTGTCAG-GT-CCTAGAAGGGATAGAGTTCATTTATCTGACTT-GGGCA-ATGGTGTT-TTTATCAA-TACCTT-GTCTAAT-TCTTTGGAT-CATATTATCAA-ATCCAAAGTTA-CTTTAC--CAACATTT--CCTTGATAAGCA---TGtagtcttttgtgcgacataagggacatctataattaagttatccagaccttagtacatattgtgactgtcaggtcctagaagggatagagttcatttatctgacttgggcaatggtgtttttatcaataccttgtctaattctttggatcatattatcaaatccaaagttactttaccaacatttccttgataagcatgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AATAGTTTTGAAATAAATATTGTGCAAGTGTAAATAATTTA