lowQualScore : 1 1 2 1 1 1 1 1 33 1 3 1
lowQualScore : . . . . . . . . .. . . .
lowQualScore : 4 4 9 4 4 4 4 4 44 4 2 6
consensus : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
Reference ( gi|16 ) : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|15 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-ACTA-TGATA
gi|7 : AAGGCCTCA-A-GGGCC-TGAGAGG-TC-GAC-T-CG--C-AC-A-TGATA
gi|5 : caAAGGCCTCA-A-TGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|13 : tcaAAGGCCTCA-A-GGGCC-TGAGA-GCTC-GAC-T-CG--C-AC-A-TGAT
gi|19 : aAAGGCCTCA-A-GGACC-CGAGA-G-TC-GAC-T-CG--C-AC-A-TGGTA
gi|9 : AAGGCCTCA-A-GGACC-TGAGA-G-TC-GAC-T-TG--C-AC-A-CGATA
gi|22 : caAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-A--A-TGA
gi|11 : aAAGGCCTCA-A-GGGCC-CGAGA-G-TC-GACTT-CG--C-AC-A-TGA
gi|10 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GCG-T-CG--C-AC-A-TGGTAgta
gi|6 : caAAGGCCTCA-A-GGGCCTTGAAA-G-TCAGAC-T-CG--C-AC-A-TGATA
gi|8 : aAAGGC-TCA-A-GGGCCCTGAGA-G-TC-GAC-T-CG--C-AC-A-TGAT
gi|24 : caAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C--C-A-ta
gi|14 : aAAGGCCTCA-A-GGG-C-TGGGA-G-TC-GAC-TCCG--C-AC-A-TGATAt
gi|4 : aAGGGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-TG--CAAC-A-TGATA
gi|21 : aaaAAGGCCTCA-A-GGGCC-TGAGA----C-GAC-T-CGCTC-AC-A-TGA
gi|3 : caAAGGCCTCA-A-GGCCG-TGAGA-G-TG-AAC-T-CG--C-ACAA-TGATA
gi|28 : tcaAAGGCCTGA-A-GGGCC-TGAGA-G-TC-AAC-T-CA--C-
gi|17 : caAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CGC-C-AC-A-TGATA
gi|12 : AGGCCTCA-AAGGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|18 : AAGCCTCACA-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-ATTGATg
gi|27 : AGGCCTCA-A-AGGCC-TGAGA-G-TC-GAC-T-TG--C-A
gi|29 : cGGTCTCA-A-GGGCC-TAAAT-G-TC-GAC-T-AG--C-a
gi|25 : GCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAcctt
gi|23 : CCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|20 : TCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAg
gi|30 : aataaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG-----C-A-TGATAg
gi|2 : TCA-A-GGGCC-TGAGA-G-TC-GAC-T-CT--C-GC-A-TCATAg
gi|1 : tgcaaaaaaaaaaaA-A-AGGCC-TGAGA-G-TC-GAC-T-CT--C-AC-A-TCATAgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): CAAAGGCATAAAAGGTATGATAGTCGACTCACC
Alignments
lowQualScore : 1 1 2 1 1 1 1 1 33 1 3 1
lowQualScore : . . . . . . . . .. . . .
lowQualScore : 4 4 8 4 4 4 4 4 33 4 1 5
consensus : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
Reference ( family-1206 ) : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|1 : A-A-AGGCC-TGAGA-G-TC-GAC-T-CT--C-AC-A-TCATA
gi|10 : tgccaaaaattacaaatgAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GCG-T-CG--C-AC-A-TGGTAgt
gi|11 : caAAGGCCTCA-A-GGGCC-CGAGA-G-TC-GACTT-CG--C-AC-A-TGA
gi|12 : AGGCCTCA-AAGGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAgta
gi|13 : AAGGCCTCA-A-GGGCC-TGAGA-GCTC-GAC-T-CG--C-AC-A-TGATg
gi|14 : aAAGGCCTCA-A-GGG-C-TGGGA-G-TC-GAC-TCCG--C-AC-A-TGATA
gi|15 : aAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-ACTA-TGATA
gi|16 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|17 : AGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CGC-C-AC-A-TGATA
gi|18 : AAGCCTCACA-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-ATTGAT
gi|19 : AAGGCCTCA-A-GGACC-CGAGA-G-TC-GAC-T-CG--C-AC-A-TGGTA
gi|2 : TCA-A-GGGCC-TGAGA-G-TC-GAC-T-CT--C-GC-A-TCATA
gi|20 : tgcaaaaaaaaaaaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAgt
gi|21 : aataaAAGGCCTCA-A-GGGCC-TGAGA----C-GAC-T-CGCTC-AC-A-TGAg
gi|22 : caAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-A--A-TGA
gi|23 : aCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|24 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C--C-A-g
gi|25 : aGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAt
gi|27 : AGGCCTCA-A-AGGCC-TGAGA-G-TC-GAC-T-TG--C-A
gi|28 : cAAGGCCTGA-A-GGGCC-TGAGA-G-TC-AAC-T-CA--C-a
gi|29 : caGGTCTCA-A-GGGCC-TAAAT-G-TC-GAC-T-AG--C-
gi|3 : AAGGCCTCA-A-GGCCG-TGAGA-G-TG-AAC-T-CG--C-ACAA-TGATAcctt
gi|30 : tcaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG-----C-A-TGATA
gi|4 : AGGGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-TG--CAAC-A-TGATAg
gi|5 : aaaAAGGCCTCA-A-TGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|6 : tcaAAGGCCTCA-A-GGGCCTTGAAA-G-TCAGAC-T-CG--C-AC-A-TGATA
gi|7 : aAAGGCCTCA-A-GGGCC-TGAGAGG-TC-GAC-T-CG--C-AC-A-TGATA
gi|8 : caAAGGC-TCA-A-GGGCCCTGAGA-G-TC-GAC-T-CG--C-AC-A-TGAT
gi|9 : caAAGGCCTCA-A-GGACC-TGAGA-G-TC-GAC-T-TG--C-AC-A-CGATAta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCATAAAAGGTATGATAGTCGACTCACC
Alignments
lowQualScore : 1 1 2 1 1 1 1 1 33 1 3 1
lowQualScore : . . . . . . . . .. . . .
lowQualScore : 4 4 8 4 4 4 4 4 33 4 1 5
consensus : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
Reference ( family-1206 ) : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|1 : A-A-AGGCC-TGAGA-G-TC-GAC-T-CT--C-AC-A-TCATA
gi|10 : tgccaaaaattacaaatgAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GCG-T-CG--C-AC-A-TGGTAgt
gi|11 : caAAGGCCTCA-A-GGGCC-CGAGA-G-TC-GACTT-CG--C-AC-A-TGA
gi|12 : AGGCCTCA-AAGGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAgta
gi|13 : AAGGCCTCA-A-GGGCC-TGAGA-GCTC-GAC-T-CG--C-AC-A-TGATg
gi|14 : aAAGGCCTCA-A-GGG-C-TGGGA-G-TC-GAC-TCCG--C-AC-A-TGATA
gi|15 : aAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-ACTA-TGATA
gi|16 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|17 : AGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CGC-C-AC-A-TGATA
gi|18 : AAGCCTCACA-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-ATTGAT
gi|19 : AAGGCCTCA-A-GGACC-CGAGA-G-TC-GAC-T-CG--C-AC-A-TGGTA
gi|2 : TCA-A-GGGCC-TGAGA-G-TC-GAC-T-CT--C-GC-A-TCATA
gi|20 : tgcaaaaaaaaaaaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAgt
gi|21 : aataaAAGGCCTCA-A-GGGCC-TGAGA----C-GAC-T-CGCTC-AC-A-TGAg
gi|22 : caAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-A--A-TGA
gi|23 : aCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|24 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C--C-A-g
gi|25 : aGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAt
gi|27 : AGGCCTCA-A-AGGCC-TGAGA-G-TC-GAC-T-TG--C-A
gi|28 : cAAGGCCTGA-A-GGGCC-TGAGA-G-TC-AAC-T-CA--C-a
gi|29 : caGGTCTCA-A-GGGCC-TAAAT-G-TC-GAC-T-AG--C-
gi|3 : AAGGCCTCA-A-GGCCG-TGAGA-G-TG-AAC-T-CG--C-ACAA-TGATAcctt
gi|30 : tcaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG-----C-A-TGATA
gi|4 : AGGGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-TG--CAAC-A-TGATAg
gi|5 : aaaAAGGCCTCA-A-TGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|6 : tcaAAGGCCTCA-A-GGGCCTTGAAA-G-TCAGAC-T-CG--C-AC-A-TGATA
gi|7 : aAAGGCCTCA-A-GGGCC-TGAGAGG-TC-GAC-T-CG--C-AC-A-TGATA
gi|8 : caAAGGC-TCA-A-GGGCCCTGAGA-G-TC-GAC-T-CG--C-AC-A-TGAT
gi|9 : caAAGGCCTCA-A-GGACC-TGAGA-G-TC-GAC-T-TG--C-AC-A-CGATAta
blockSeqs : C A T G C A T C CT A T T
blockSeqs : . . C . . . . . C . A .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
finalCons : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCATAAAAGGTATGATAGTCGACTCACC
Alignments
lowQualScore : 1 1 2 1 1 1 1 1 33 1 3 1
lowQualScore : . . . . . . . . .. . . .
lowQualScore : 4 4 8 4 4 4 4 4 33 4 1 5
consensus : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
Reference ( family-1206 ) : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|1 : A-A-AGGCC-TGAGA-G-TC-GAC-T-CT--C-AC-A-TCATA
gi|10 : tgccaaaaattacaaatgAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GCG-T-CG--C-AC-A-TGGTAgt
gi|11 : caAAGGCCTCA-A-GGGCC-CGAGA-G-TC-GACTT-CG--C-AC-A-TGA
gi|12 : AGGCCTCA-AAGGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAgta
gi|13 : AAGGCCTCA-A-GGGCC-TGAGA-GCTC-GAC-T-CG--C-AC-A-TGATg
gi|14 : aAAGGCCTCA-A-GGG-C-TGGGA-G-TC-GAC-TCCG--C-AC-A-TGATA
gi|15 : aAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-ACTA-TGATA
gi|16 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|17 : AGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CGC-C-AC-A-TGATA
gi|18 : AAGCCTCACA-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-ATTGAT
gi|19 : AAGGCCTCA-A-GGACC-CGAGA-G-TC-GAC-T-CG--C-AC-A-TGGTA
gi|2 : TCA-A-GGGCC-TGAGA-G-TC-GAC-T-CT--C-GC-A-TCATA
gi|20 : tgcaaaaaaaaaaaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAgt
gi|21 : aataaAAGGCCTCA-A-GGGCC-TGAGA----C-GAC-T-CGCTC-AC-A-TGAg
gi|22 : caAAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-A--A-TGA
gi|23 : aCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|24 : AAGGCCTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG--C--C-A-g
gi|25 : aGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATAt
gi|27 : AGGCCTCA-A-AGGCC-TGAGA-G-TC-GAC-T-TG--C-A
gi|28 : cAAGGCCTGA-A-GGGCC-TGAGA-G-TC-AAC-T-CA--C-a
gi|29 : caGGTCTCA-A-GGGCC-TAAAT-G-TC-GAC-T-AG--C-
gi|3 : AAGGCCTCA-A-GGCCG-TGAGA-G-TG-AAC-T-CG--C-ACAA-TGATAcctt
gi|30 : tcaTCA-A-GGGCC-TGAGA-G-TC-GAC-T-CG-----C-A-TGATA
gi|4 : AGGGCCTCA-A-GG-CC-TGAGA-G-TC-GAC-T-TG--CAAC-A-TGATAg
gi|5 : aaaAAGGCCTCA-A-TGGCC-TGAGA-G-TC-GAC-T-CG--C-AC-A-TGATA
gi|6 : tcaAAGGCCTCA-A-GGGCCTTGAAA-G-TCAGAC-T-CG--C-AC-A-TGATA
gi|7 : aAAGGCCTCA-A-GGGCC-TGAGAGG-TC-GAC-T-CG--C-AC-A-TGATA
gi|8 : caAAGGC-TCA-A-GGGCCCTGAGA-G-TC-GAC-T-CG--C-AC-A-TGAT
gi|9 : caAAGGCCTCA-A-GGACC-TGAGA-G-TC-GAC-T-TG--C-AC-A-CGATAta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCATAAAAGGTATGATAGTCGACTCACC