lowQualScore : 1111 111111111 11111 111 1111 44444444444444444 2 1 5555555555555555555555555 1111 111 55555555555555 1111 22222 1 22 33 1 1111 33 1 22 333 33333333 11 77777777777777777777777777 4444444 1 3 1 11 111 88888888888888888888888888 1111 1111 5555 1111111 11111 1 2 1 1 33333333 55 1 222
lowQualScore : 0000 0 4 666666666 5 5 77777 66 55 888 5 888 66 0000 888 77777777777777777 5 5 5 5 5 5 66 5 5 0 1 66 5 9999999999999999999999999 0 8888 2222 000 777 4 2 5 6 6 55 6 3 88888888888888 8 88 8 8 55 99 2 3 0 7777 8 8 8 3 55555 0 33 8 00 8 11 3 9999 0 44 1 0 8 0 8 8 0 11 6 777 99 44444444 11 8 4 00000000000000000000000000 3 0000000 0 0 2 2 44 0 3 6 6 66 8 5 777 5 44444444444444444444444444 6 2 99 0 5 1111 2222 1111 3 3 3333333 66666 9 2 7 0 0 0 22222222 3 55 0 000 2 3
lowQualScore : .... . . ......... . . ..... .. .. ... . ... .. .... ... ................. . . . . . . .. . . . . .. . ......................... . .... .... ... ... . . . . . .. . . .............. . .. . . .. .. . . . .... . . . . ..... . .. . .. . .. . .... . .. . . . . . . . .. . ... .. ........ .. . . .......................... . ....... . . . . .. . . . . .. . . ... . .......................... . . .. . . .... .... .... . . ....... ..... . . . . . . ........ . .. . ... . .
lowQualScore : 6666 1 0 555555555 0 1 00000 99 44 777 0 888 99 6666 888 33333333333333333 6 7 7 0 0 0 99 0 0 8 4 99 0 3333333333333333333333333 7 0000 1111 000 111 4 5 7 7 7 77 7 7 77777777777777 0 88 0 0 77 22 8 0 8 0000 0 0 0 8 88888 0 22 0 00 0 44 7 5555 8 66 8 8 0 8 0 0 8 88 7 555 22 88888888 00 0 6 44444444444444444444444444 0 4444444 0 0 5 5 00 0 2 7 7 88 0 0 000 6 00000000000000000000000000 7 5 22 6 7 9999 1111 5555 2 2 8888888 77777 0 2 8 0 5 2 00000000 2 00 5 555 5 2
consensus : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----GTT---GT---------C--G-GG-TGTTNTT-GGGAA-GT-ACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGA--ATT-GGG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGAT-TTAGGGTATTGCGGGT-CACTT-C-CGGTTATTTCGAGTCACTTCGT-AAAC-AT--A-ATA-AAACCTAAATAA-A-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----A-TTGC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGCTTATT-TTTTTT---AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCACGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGGGAAAAAA--TATCG-GCTCCAATA-A-CA--------------------CATTCTCGTAATTT-CACTTAAA-TAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-G-ATATTTTT-CAATGTAACAAATAAAAANAAT-ATACAAC-ACATATATANAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCAT--TATAAAATAAATAACATG-AT-ATATACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-TGTCCCA-ATTTTTCTACGAGAGATACATA-CATACGTACGTAGTTCTTCACCTAAT--AAATTATATN-CCCTCATCAGGTGTGATACAGTGT
Reference ( gi|1 ) : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTATAC--T--GCATT--AAATAAAA-CTAAT--AAGGTT-AT---TAT--TG----GTT---GT---------T--G-G--TGTTTTT-GGCAA-GT-ACATT-ATG--TGAGTAAA-TAGATGTA-TGCATCGA--ATT-GAG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGAT-TTAGGGTATTGCGGGT-CACTT-C-CGGTTATTTCGAGTCACTTCGT-AAAC-AT--A-ATA-AAACCTAAATAA-A-AGGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----A-TTGC-TA-TAATT-TAATTTTGAATGTGT-TCAGA-AAAGCA--TTTTTATT-GGACAAATGGCTTATTGTTTTTT---AATTGATATATGTTATATACTCACACA-AATTGT-AACG-TACGGTCACGCGTGC-ATTTCGGAGTA-TAGATC--AAACATGGTGAATAAA--TATCA-GCTCCAGT--A-CA--------------------CATTTTCATAATTTCCACTT-AA-TAAATATA-GCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-G-ATA-TTTT-CAATGTAGCAAATAAAACAAAT-ATACAACAACATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATATTATAAAATAAATAACATG-AT-ATATACATG-----TATCTGAATCTAAATAGACTCTCAATCTGATCTTGTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTCTTCACCTAATAAAAATCATATA-CCCTCATCAGGTGTGATACAGTGT
gi|22 : CAGTCATTTAGGGTATTTC----GGGTCA-CT
gi|20 : gtaGTCATTAAGGGTATTTC----GGCTAA-CTTTTT-------GCAT-GTATAC--T--GCATT--GTAGAAAA-CTAA
gi|3 : ATTTGGGGTATTGC----GGGTCA-CTTcg
gi|10 : tctattattggttgtcgggttgtttttgggaaagtacattgtgtgagtaatagatgtaatgcataaaattgggatttactcttcggataaaagattgtatatgcgagttttatttgtaacctccgTTTAGGGTATTTC----GGGTCA-CTTTTTTAGTTTTACAT-TTCTAC-----GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----GTT---GT---------T--GAG--TGTTATT-GG-AA-GT-ACATCAACG--TGAGTAAACCAGACGTA-TGGATCGA--ATT-G-G-TTT-C----------------------T--A-ATGCGAG----TTTT---ATTTA----CTCTAGTATTAGGccggttatttcgagtcctttcgtgaaactatataaacttaaataaacaggctcataatatcggtttgtgaacagaattagaaagaattgctataattgtaatttgaatttggatcagacaaagcatttttttattgggaccaatggcttattttttttaattgaatactatatacacaccaaattgtaaacgctacgtgcacgcgtgcaatttcggagtactggaataaacacgggggaaaatatcagctccaatagcacattctcgtaatttacttaaataaatatatgcaagtaattataatataatatacttatttgaaacaatgatatttttcaatgtaaaataaaaataatacacacatattacaactttgagaaatgtaaaggcctatgttttaaataaataaaaacaatgacttgatttatctagactcattaaataataacatgataatatacatgcatgttatctgaattaaatagacttcgatctgatctggtcccacatttttctacgagagatacataagtacgtagttcttaacctaataattgttccctcatcaggtgtgatcagtgt
gi|2 : TAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTCTAC--T--GCATT--AAATAAAAACTAAC--AAGGTT-AT---TAT--TG----GTT---GT---------C--G-GG-TGTTTTTTGGGAA-GT-ACATA-ATG--TGAGTAAA-TAGATGTA-TGCATCGA--ATTTGGG-TTTAC--TTCG-A-TAAAAAACGATTGT--A-ATGCGAG----TTTT---ATTTGTG-CCTCCGAT-TTGGGGTATTGGGGGTCCACTTCC-CGGTTATTTCGAGTCACTTCGTGAAACTAT----ATA-AAACCTAAATAA-A-AGGCTCAATAAAAT--CGTTTGGTGAACAG-ATTAGAAATACTTCATTTGCGTA-TAA--------TTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGCTTCTTTTTTTTTTTAAATTGATATATG-TATATACACACACACAATT-T-AACG-TACGTGCACGCGTGC-ATTTCGGAGTACTGGATTCAAAACTGGGCGGAAAAA--TATCA-GCTCCAATAGA-TA--------------------CATCTTCGTAATTT-TAC-T-AA-TAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-G-ATATTTTT-CAATGTAAC-ACTAA---AAATAATGCAAC-ACATAT-TAGAAC-TTGAGAAA--AATGT-AACGCCTATGTTATAAATAAAGTG-AAAATAAA---CATTCAAGGAACCTTGTTTTATCTAGACACA---TATAAAATAAATAACATG--------ACATA-----TATCTGAATCTAAATAGATTTTCGATCTGATC-TGTCCCA-ATTTTTCTACGAGAGACTGATA-CATACCTACGTAGTTCTTC-CCTAAT--AAATTATATT-CC--CATCAAGTGTGATACAGTGT
gi|12 : TAGGGTATTTATATAGGGTCT-CTTTTT-------ACAT-TTTTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----GTA---G-------------------GTTGTT-GG----GT---AGT-GTGACTGAGTAAA-TAGATGTA-TGGATTGA--ATT-
gi|8 : TTC----GGGT-A-CTTTT--------ACAT-TTATACCGT--GCATCTCAAATAAA--CTAAC--CAAGTTCAT---TAT--TG----GGT---TT---------TCGG-G--CGTTTTT-GG-AA-GTTACACT-ATG--GGAGTAAA-TAGATGTA-TG--TCAATTATT-G-G-TTTAC-CTTCG-ATTAAAA--CGATTGTAAA-ATGCGAG----TTTCTAAATTTGTA-CCTCCGAT-TAA--GTA-TGC-GAT-CACTT-CACG--TATTTCGA-TCACTTCGT-GAA
gi|6 : TTC----GGGTTAACTTA---------ACAT-GTATAC--TTGGAATT--GTAGAACA-CTAACTCGAGGTT-GTATCTGTGGTG----GTT---GTGGTATTATTT--G-GG-TGTTATT-GGGAT-GT-ATATT-ATC--TGACTAAA-CAG----A-CGTAT-GA--AAT-GA--------------------A--CGACGG---------GAG----GCTT---ATTT--------TGAT-CGA----ATTGCGGGT-CACTT-C-CGG-TATTTTGAGTCA----------------------------AAATAA-A-AGGCTGAATAATATACCGTTTTATGATCAAACTTAAGTAAT----A-TTGC-TATTAGCT-TATTTTCGGTTTTA--TCAGA-GATGTA--TTTTTATT-GAACAGA-GACT--TTATTTTTtc
gi|21 : gtaccaagtagaggttttaTCA-GTTTTT-------ACAT-TTCTAC--T--GCATT--AAATGAAT-CTAAC--ATGGCT-AT---TCT--TG----GTT---Ga
gi|5 : -CTTTGT-------ACATCTTGTAC-------AT---AGAGAAAA-CGAA----------------AT--TGCCCCGTTCAAGT---------T--GAG--TGTTATT-GGGAA-GT-AGATT-ATG--TGAGTTAA-TAGATGTA-TGGATCGA--ATT-ATG-TTTAC-CTTCG-A-TAAAA--CGATTCT--A-ATGCAAGCTAGTTTT---ATTTGTA-CCTCCGAT-TTGGGGTATTGCGGGT-CAC---C-TGGTTATTTCGAGTCACTTCTTGAAAC--T--ATATA-AAACCTAAATAA-A-AAGCTCAATAATAT--TGTTTGGTGAACAGAATTAGAAAGA----A-TTGC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAGGCA--TTTTTATT-GGACAAATGGCGCA---TTTTTA---AATTG
gi|3 : tttaaaaggtttctgctacttgtttgcT-AT---TAT--TG----GTT---GT---------C--G-GGTTGTTTTT-GGGAAAGT-ACATT-GTG--TGAGTAA--TAGATGTAATGCATAAA--ATT-GGGATTTACTCTTCGGA-TAAAA---GATTGT--ATATGCGAG----TTTT---ATTTGTAACCTCCGAT-TTGGGGTATTGCGGGT-CACTT-C-CGGTTATTTCGAGTCCTTTCGT-GAA--AC--T-ATATAAACTTAAATAA-ACAGGCTC-ATAATAT--CGGTTTGTGAACAGAATTAGAAAGA----A-TTGC-TA-TAATTGTAA-TTTGAATTTGGATCAGACAAAGCATTTTTTTATTGGGACCAATGGCTTATT-TTTTTT---AATTGA---ATACTATATACACAC-CA-AATTGTAAACGCTACGTGCACGCGTGCAATTTCGGAGTACTGGAAT--AAACACGGGGGA-AAA--TATCA-GCTCCAAT--AGCA--------------------CATTCTCGTAATTT--ACTTAAA-TAAATATATGCAAGTAATTATAATATAATATACTTATTTGAAACAAT-G-ATATTTTT-CAATGTA--AAATAAAAATAAT-ACAC----ACATAT-TACAACTTTGAG--A--AATGTAAAGGCCTATGTTTTAAATAAA-TA-AAAACA------AT----GA---CTTGATTTATCTAGACTCAT-T----AAAT-AATAACATG-ATAATATACATGCATGTTATCTGAAT-TAAATAGACT-TCGATCTGATCTGGTCCCACATTTTTCTACGAGAGATACATA--A---GTACGTAGTTCTTAACCTAAT---AAT--TGTT-CCCTCATCAGGTGTGAT-CAGTGTtacacgcgtg
gi|16 : tcAA-GT-GCATT-ACG--T----AAA-CAGACGTA-TGAATCGA--ATT-GGG-TT--------------------AATTCT--A-ATGCGAG----ATTT---ATTTGTA-CCTCTAAT-
gi|22 : gAT-TTAGGGTATTTCGGGT-CACTat
gi|10 : gtacagtcT-TTAGGGTATTTCGGGT-CACTT-T-T--TTAGTTTTA--CATTTC-T-ACGC-ATTAA-ATA-AAAC-----TAACA-AGGTT--AT--TAT--TGGTTGTTG
gi|4 : GCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----A-TTGC-TA-TAATT-TAA-TTTGAATGTGT-TCAGA-AAAGCAT-TTTTTATT-GGACAAATGGCTTATTGTTTTTT---AATTGATATATG-TATATACTCACACA-AATTGT-AACG-TACGTGCACGCGTGC-ATTTCGGAGTACTAGATC--AAACATGG-GATAAAA--TATCA-GCTCCAGT--A-CA--------------------CATTTTCATAATTT-CACTTAAA-TAAATATATGCAA--CATTACGATAT-ATATACTTATTTGAAACAAT-GTAT--TTTT-CAATGTAGC-AATAAAAACAAT-ATACAACACTATAT---GAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATA-TATAAAATAAATAACATGAAT-AT-TACATG-----TATCTGAATCTAAATAGACT-TCAATCTGATC-TGTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTTCTCACCTAAT--AAATCATATA--CCTCATCAGGTGTGATACAGTGagtgttattggaagtacatcaacgtgagtaaaccagacgtatggatcgaattggtttctaatgcgagttttatttactctagtattagg
gi|9 : GACAAATGACCTATT--CTTTA---AATTGATATGT-------ACACACACA-AAT-GT-AACA-T----------GTGT-AATACAGGGTG---GATC--AAGCA-GCCCAACAAAATTATGG-CCTCCAAT--A-CATTAAAAAAAAAAAGTTGACACAATCCTGTAATTTTAACAG-AAGTAAATATA-G---GTCATTATATTAT-G-ATATTTATTTGAAACAAT-G-A
gi|13 : gttGGCCTCTTGTTTTA----AATTGATATAT-CTATATACACACACA-GATTGT-AACG-TACTTGCACGCGTGG-ATTTCGGAGTACTGGATC--AAACA-GGGGAAc
gi|15 : tgGTAACGTG-GC-ATTTCGGAGTACTGGATC---GACAGGGGG---AAA--TATCGCGCTCAATTA-A-TA--------------------CATTCTCGTACTTT-CACTa
gi|7 : acatAACAATTG-ATA-TTTT----TCTAACAA-TAAAA------ATA---------ATACA-AAC-T---GAGA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATCTAGACTCAT---------------------AT-ATATAC-----------CTGAATCTATATAGACTCTCGATCTGATC-TGTCCCA-ATTTTTCTACGAGAGATATACA-TAGATGTACGTAGTTCTTCAGCTAAT--AAATTATATATTCCTCATCAGTTGTGATACAGTGT
gi|11 : -G-ATA-TTTTTCAAT----CAAACAATAAAAAT-A-------------ATACAAC-TTGAGAAA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATTTAGACTC---CGATAAAATAAATA--ATG-AC--TGTACATG-----Ta
gi|18 : AAC-TT-AGAAATGCATGTAAAGACCTATATTCCATATAAAGTGAAAAATGAATTTCAT----GGAA
gi|14 : ATGTTTTAAATAAAGTG-AAAATAAA---CAT----TGAGCCTTGTTTTATCTACACTCA---TATAAAATAAATGACATG-AT-ATATACATG-----TATCTGAATCTAAAattgtcatttt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GGCTAGTTAGGTGATCACATGGATCATATTGTCATGCATGTTATCTAAGTGAAATATAATCCGACCTGAGCTG
Unaligned ( gi|19 ): AGTACTGGATCGAACAGGGGGGAAATATCGCGGCTCCAATTAATACATTCTCGTACTTTCACCTATA
Alignments
lowQualScore : 1111 1111111 11111 2222222222 222222222222222222222222222 1111 3333333333 1111 111 11 1 11111 11 111 55555555555555555555 1 44444444444444444 1111 2222222 111 11111 1 11 111 111
lowQualScore : 0000 0 4 4444444 4 1 44444 66 4 66 4 777 66 9999 4 777 1111111111 5 1 5 4 4 66 4 0 4 5 0 4 444444444444444444444444444 66 5 0000 888 0 5 5 4 6 6 6 3 1 5555555555 8 8 99 3 4444 6 6 6 777 3 3 77 6 88 6 5 0 77777 66 6 6 6 5 5 66 5 5 333 5 77 5 5 55555555555555555555 77 5 66 0 8 0 5 2 8 7 1 77777777777777777 5 0 77 4 5 9999 0000 1111111 1 1 444 5 44444 3 8 8 8 1 99 5 1 0 111 6 222 0
lowQualScore : .... . . ....... . . ..... .. . .. . ... .. .... . ... .......... . . . . . .. . . . . . . ........................... .. . .... ... . . . . . . . . . .......... . . .. . .... . . . ... . . .. . .. . . . ..... .. . . . . . .. . . ... . .. . . .................... .. . .. . . . . . . . . ................. . . .. . . .... .... ....... . . ... . ..... . . . . . .. . . . ... . ... .
lowQualScore : 6666 1 0 4444444 4 0 11111 11 4 11 4 888 11 4444 4 888 1111111111 0 0 0 4 4 11 4 7 4 3 1 4 888888888888888888888888888 99 0 6666 888 1 0 0 3 7 7 7 2 0 3333333333 0 0 22 2 2222 7 7 7 222 2 2 77 7 55 7 0 0 66666 77 7 7 7 7 7 99 0 0 000 7 99 7 7 00000000000000000000 44 7 33 6 0 8 7 5 2 3 0 55555555555555555 7 7 99 0 0 2222 6666 6666666 4 4 333 7 33333 2 0 0 0 4 22 6 4 8 888 8 222 8
consensus : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGAT-TTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAACTATAATA-AAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-CA-CTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAGCAAATAAAAANAATACACAAC-ACATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
Reference ( family-11819 ) : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGAT-TTAGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAAC-ATAATA-AAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-CA-CTTAAATAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAANAATATACAAC-ACATATATANAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATA-CATACGTACGTAGTTCTTCACCTAAT--AAATTATAT-NCCCTCATCAGGTGTGATACAGTGT
gi|1 : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTATAC--T--GCATT--AAATAAAA-CTAAT--AAGGTT-AT---TAT--TG----G-TT---GT---------TGG-T-GTTTTT-GGCAA-GTACATT-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATT-G--AG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGAT-TTAGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAAC-ATAATA-AAACCTAAATAAA-AGGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATGTGT-TCAGA-AAAGCA--TTTTTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATGTTATATACTCACACA-AATTGT-AACG-TACGGTCA-CGCGTGC-ATTTCGGAGTA-TAGATC--AAACATGGT-GAA-TAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTTCCA-CTT-AATAAATATA-GCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATA-TTTTCAATGTAGCAAATAAAACAAATATACAACAACATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATAT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCAATCTGATCTT-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTCTTCACCTAATAAAAATCATAT-ACCCTCATCAGGTGTGATACAGTGT
gi|10 : TTTAGGGTATTTC----GGGTCA-CTTTTTTAGTTTTACAT-TTCTAC-----GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------TGAGT-GTTATT--GGAA-GTACATCAACG--TGAGTAAACCAGACGTA-TGGATCGAATT-G--G--------TTTC-----------------T--A-ATGCGAG----TTTT---ATTTA----CTCTAGTATTAGG
gi|11 : -GATATTTTTCAAT----CAAACAATAAAAATA-------------ATACAAC-TTGAGAAA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATTTAGACTC---C-GATAAAATAAATA--ATGAC--TG-TACATG-----T
gi|12 : TAGGGTATTTATATAGGGTCT-CTTTTT-------ACAT-TTTTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TA---G----------------GTTGTT-GGGTA-G-----T-GTGACTGAGTAAA-TAGATGTA-TGGATTGAATT-
gi|13 : GGC-CTCTT-GTTTTA----AATTGATATAT-CTATATACACACACA-GATTGT-AACG-TACTTGCA-CGCGTGG-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-A
gi|14 : tgATGTTTTAAATAAAGTG-AAAATAAA---CAT----TGAGCCTTGTTTTATCTACACTC--A--TATAAAATAAATGACATGAT-ATA-TACATG-----TATCTGAATCTAAA
gi|15 : ACATGTAACGTG-GC-ATTTCGGAGTACTGGATC---GACA-GGG-G---GAAAT-AT--CGCGCTCAAT-TA-------------------ATACATTCTCGTACTTT-CA-CT
gi|16 : GAA-GTGCATT-ACG--T----AAA-CAGACGTA-TGAATCGAATT-G--GG-TT--------------------AATTCT--A-ATGCGAG----ATTT---ATTTGTA-CCTCTAAT-
gi|18 : AAC-TT-AGAAATGCATGTAAAGACCTATATTCCATATAAAGTGAAAAATGAATTTCAT----GGAAat
gi|19 : AGTACTGGATC--GAACA-GGG-G-G-GAAAT-ATCGCG-GCTCCAATTA-------------------ATACATTCTCGTACTTT-CA-CCTAattgtcatttt
gi|2 : TAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTCTAC--T--GCATT--AAATAAAAACTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTTTTTGGGAA-GTACATA-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATTTG--GG-TTTAC--TTCG-A-TAAAAAACGATTGT--A-ATGCGAG----TTTT---ATTTGTG-CCTCCGAT-TTGGGGTATTGGGGGTCCACTTC-CCGGTTATTTCGAGTCACTTCGTGAAACTATA-TA-AAACCTAAATAAA-AGGCTCAATAAAAT--CGTTTGGTGAACAGA-TTAGAAATACTTCATTTGCGTA-TAATT--------GAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTCTT-TTTTTTTTTAAATTGATATATG-TATATACACACACACAATT-T-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATTCAAAACT-GGGCGGA-AAAAT-AT--CA-GCTCCAA-TAG------------------ATACATCTTCGTAATTT-TA-CT--AATAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAC-TAAAAATAATG--CAAC-ACATAT-TAGAAC-TTGAGAAA--AATGTAACG-CCTATGTTATAAATAAAGTG-AAAATAAA---CATTCAAGGAACCTTGTTTTATCTAGACAC--AT--ATAAAATAAATAACATGA--------CATA-----TATCTGAATCTAAATAGATTTTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGACTGATA-CATACCTACGTAGTTCTTC-CCTAAT--AAATTATAT-TCC--CATCAAGTGTGATACAGTGTta
gi|20 : GTCATTAAGGGTATTTC----GGCTAA-CTTTTT-------GCAT-GTATAC--T--GCATT--GTAGAAAA-CTAAC--
gi|21 : TCA-GTTTTT-------ACAT-TTCTAC--T--GCATT--AAATGAAT-CTAAC--ATGGCT-AT---TCT--TG----G-TT---Gg
gi|22 : CAGTCATTTAGGGTATTTC----GGGTCA-CT
gi|3 : gtaT-AT---TAT--TG----G-TT---GT---------CGGGTTGTTTTT-GGGAAAGTACATT-GTG--TGAGTAA--TAGATGTAATGCATAAAATT-G--GGATTTACTCTTCGGA-TAAAA---GATTGT--ATATGCGAG----TTTT---ATTTGTAACCTCCGAT-TTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCCTTTCGT-GAA--ACTATATAAACTTAAATAAACAGGCTC-ATAATAT--CGGTTTGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATTGTAA-TTTGAATTTGGATCAGACAAAGCATTTTTTTATTGGGACCAATGGC-TTATT-TTTTTT----AATTGA---ATACTATATACACAC-CA-AATTGTAAACGCTACGTGCA-CGCGTGCAATTTCGGAGTACTGGAAT--AAACA-CGG-GGG-AAAAT-AT--CA-GCTCCAA-TA-------------------GCACATTCTCGTAATTT--A-CTTAAATAAATATATGCAAGTAATTATAATATAATATACTTATTTGAAACAAT-GATATTTTTCAATGTA--AAATAAAAATAATAC---AC-ACATAT-TACAACTTTGAG--A--AATGTAAAGGCCTATGTTTTAAATAAA-TA-AAAACA------AT----GA---CTTGATTTATCTAGACTC--AT-T---AAAT-AATAACATGATAATA-TACATGCATGTTATCTGAAT-TAAATAGACT-TCGATCTGATC-TGGTCCCACATTTTTCTACGAGAGATACATA--A---GTACGTAGTTCTTAACCTAAT---AAT--TGT-TCCCTCATCAGGTGTGAT-CAGTGT
gi|4 : tcGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTT-GAATGTGT-TCAGA-AAAGCATTTT-TTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATG-TATATACTCACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTAGATC--AAACA-TGG-GAT-AAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTT-CA-CTTAAATAAATATATGCAA--CATTACGATAT-ATATACTTATTTGAAACAAT-G-TATTTTTCAATGTAGC-AATAAAAACAATATACAAC-AC-TATAT-GAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--ATATATAAAATAAATAACATGA--ATATTACATG-----TATCTGAATCTAAATAGACT-TCAATCTGATC-T-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTTCTCACCTAAT--AAATCATAT-A-CCTCATCAGGTGTGATACAGTG
gi|5 : -CTTTGT-------ACATCTTGTAC-------AT---AGAGAAAA-CGAA----------------AT--TGCCCCG-TTCAAGT---------TGAGT-GTTATT-GGGAA-GTAGATT-ATG--TGAGTTAA-TAGATGTA-TGGATCGAATT-A--TG-TTTAC-CTTCG-A-TAAAA--CGATTCT--A-ATGCAAGCTAGTTTT---ATTTGTA-CCTCCGAT-TTGGGGTATTGCGGGTC-AC--C-T-GGTTATTTCGAGTCACTTCTTGAAACTATA-TA-AAACCTAAATAAA-AAGCTCAATAATAT--TGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAGGCA--TTTTTATT-GGACAAATGGC-GCA---TTTTTA----AATTG-TACACGC
gi|6 : tttaaaaggtttctgctacttgtttgcTTC----GGGTTAACTTA---------ACAT-GTATAC--TTGGAATT--GTAGAACA-CTAACTCGAGGTT-GTATCTGTGGTG----G-TT---GTGGTATTATTTGGGT-GTTATT-GGGAT-GTATATT-ATC--TGACTAAA-CAGAC-----GTAT-GAAAT-G----------------------AA--CGACGG---------GAG----GCTT---ATTT--------TGAT-CGA----ATTGCGGGTC-ACTTC-C-GG-TATTTTGAGTCA-------------------------AAATAAA-AGGCTGAATAATATACCGTTTTATGATCAAACTTAAGTAAT----ATT-GC-TATTAGCT-T-ATTTTCGGTTTTA-TCAGA-GATGTA--TTTTTATT-GAACAGA-GACTTTATT-TTTgtg
gi|7 : gtaccaagtagaggttttaAACAATTGATATTTTTC----TAACAA-TAAAAATAATACA---------------AAC-T---GAGA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATCTAGACTC--AT-------------------AT-ATA-TAC-----------CTGAATCTATATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATATACA-TAGATGTACGTAGTTCTTCAGCTAAT--AAATTATATATTCCTCATCAGTTGTGATACAGTGTa
gi|8 : TTC----GGGT-A-CTTTT--------ACAT-TTATACCGT--GCATCTCAAATAAA--CTAAC--CAAGTTCAT---TAT--TG----GGTT---TT---------CGGGC-GTTTTT-GGAAG-TTACACT-ATG--GGAGTAAA-TAGATGTA-TG--TC-AATT-ATTGG-TTTAC-CTTCG-ATTAAAA--CGATTGTAAA-ATGCGAG----TTTCTAAATTTGTA-CCTCCGAT-TAA--GTA-TGC-GATC-ACTTCAC-G--TATTTCGA-TCACTTCGT-GAAa
gi|9 : GACAAATGAC-CTATT-CTTTA-----AATTGATATGT-------ACACACACA-AAT-GT-AACA-T-----------GTGT-AATACAGGGT---GGATC--AAGCA-GCC-CAACAAAATTAT--GG-CCTCCAA-TACATTAAAAAAAAAAAGTTGACACAATCCTGTAATTT-TAACAGAAGTAAATATA----GGTCATTATATTAT-G-ATATTTATTTGAAACAAT-GAtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGCTAGTTAGGTGATCACATGGATCATATTGTCATGCATGTTATCTAAGTGAAATATAATCCGACCTGAGCTG
Alignments
lowQualScore : 1111 1111111 11111 2222222222 222222222222222222222222222 1111 2 2222 1111 111 11 1 11111 11 111 55555555555555555555 111 1 4444444444444444 1111 2222222 111 11111 1 2 111
lowQualScore : 0000 0 4 4444444 4 1 44444 66 4 66 4 777 66 9999 4 777 1111111111 5 1 5 4 4 66 4 0 4 5 0 4 444444444444444444444444444 66 5 0000 888 5 88 6 6 6 1 0 5 2222 8 99 3 4444 6 6 6 777 3 3 77 6 88 6 5 0 77777 66 6 6 6 5 5 66 5 5 333 5 77 5 5 55555555555555555555 333 66 66 8 0 5 777 1 1 5555555555555555 5 0 77 5 9999 0000 1111111 1 1 000 5 44444 3 8 8 8 1 0 5 1 0 111 6 88 0
lowQualScore : .... . . ....... . . ..... .. . .. . ... .. .... . ... .......... . . . . . .. . . . . . . ........................... .. . .... ... . .. . . . . . . .... . .. . .... . . . ... . . .. . .. . . . ..... .. . . . . . .. . . ... . .. . . .................... ... .. .. . . . ... . . ................ . . .. . .... .... ....... . . ... . ..... . . . . . . . . . ... . .. .
lowQualScore : 6666 1 0 4444444 4 0 11111 11 4 11 4 888 11 4444 4 888 1111111111 0 0 0 4 4 11 4 7 4 3 1 4 888888888888888888888888888 99 0 6666 888 7 33 7 7 7 0 0 6 4444 0 22 2 2222 7 7 7 222 2 2 77 7 55 7 0 0 66666 77 7 7 7 7 7 99 0 0 000 7 99 7 7 00000000000000000000 111 33 44 0 8 7 888 3 0 0000000000000000 7 7 99 0 2222 6666 6666666 4 4 777 7 33333 2 0 0 0 4 0 6 4 8 888 4 88 8
consensus : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAAC-ACATAT-TAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
Reference ( family-11819 ) : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAGCAAATAAAAANAATACACAAC-ACATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
gi|1 : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTATAC--T--GCATT--AAATAAAA-CTAAT--AAGGTT-AT---TAT--TG----G-TT---GT---------TGG-T-GTTTTT-GGCAA-GTACATT-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATT-G--AG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGATTTAGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAAC-ATAATAAAACCTAAATAAA-AGGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATGTGT-TCAGA-AAAGCA--TTTTTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATGTTATATACTCACACA-AATTGT-AACG-TACGGTCA-CGCGTGC-ATTTCGGAGTA-TAGATC--AAACATGGT-GAA-TAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTTCC-ACTT-AATAAATATA-GCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATA-TTTTCAATGTAGCAAATAAAACAAATATACAACAACATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATAT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCAATCTGATCTT-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTCTTCACCTAATAAAAATCATAT-ACCCTCATCAGGTGTGATACAGTGT
gi|10 : TTTAGGGTATTTC----GGGTCA-CTTTTTTAGTTTTACAT-TTCTAC-----GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------TGAGT-GTTATT--GGAA-GTACATCAACG--TGAGTAAACCAGACGTA-TGGATCGAATT-G--G--------TTTC-----------------T--A-ATGCGAG----TTTT---ATTT
gi|11 : -GATATTTTTCAATCAAACAA-TAAAAATAATACA----------------AC-TTGAGAAA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATTTAGACTC---C-GATAAAATAAATA--ATGAC--TG-TACATG-----Tactctagtattagg
gi|12 : TAGGGTATTTATATAGGGTCT-CTTTTT-------ACAT-TTTTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TA---G----------------GTTGTT-GGGTA-G-----T-GTGACTGAGTAAA-TAGATGTA-TGGATTGAATT-
gi|13 : GGC-CTCTT-GTTTTA----AATTGATATAT-CTATATACACACACA-GATTGT-AACG-TACTTGCA-CGCGTGG-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-A
gi|14 : tgATGTTTTAAATAAAGTG-AAAATAAA---CAT----TGAGCCTTGTTTTATCTACACTC--A--TATAAAATAAATGACATGAT-ATA-TACATG-----TATCTGAATCTAAA
gi|15 : ACATGTAACGTG-GC-ATTTCGGAGTACTGGATC---GACA-GGG-G---GAAAT-AT--CGCGCTCAAT-TA-------------------ATACATTCTCGTACTTT-C-ACT
gi|16 : GAA-GTGCATT-ACG--T----AAA-CAGACGTA-TGAATCGAATT-G--GG-TT--------------------AATTCT--A-ATGCGAG----ATTT---ATTTGTA-CCTCTAAT
gi|18 : AAC-TT-AGAAATGCATGTAAAGACCTATATTCCATATAAAGTGAAAAATGAATTTCAT----GGAAat
gi|19 : AGTACTGGATC--GAACA-GGG-G-G-GAAAT-ATCGCG-GCTCCAATTA-------------------ATACATTCTCGTACTTT-C-ACCTAattgtcatttt
gi|2 : TAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTCTAC--T--GCATT--AAATAAAAACTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTTTTTGGGAA-GTACATA-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATTTG--GG-TTTAC--TTCG-A-TAAAAAACGATTGT--A-ATGCGAG----TTTT---ATTTGTG-CCTCCGATTTGGGGTATTGGGGGTCCACTTC-CCGGTTATTTCGAGTCACTTCGTGAAACTATA-TAAAACCTAAATAAA-AGGCTCAATAAAAT--CGTTTGGTGAACAGA-TTAGAAATACTTCATTTGCGTA-TAATT--------GAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTCTT-TTTTTTTTTAAATTGATATATG-TATATACACACACACAATT-T-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATTCAAAACT-GGGCGGA-AAAAT-AT--CA-GCTCCAA-TAG------------------ATACATCTTCGTAATTT-T-ACT--AATAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAAC-ACTAAAAATAAT--GCAAC-ACATAT-TAGAAC-TTGAGAAA--AATGT-AACGCCTATGTTATAAATAAAGTG-AAAATAAA---CATTCAAGGAACCTTGTTTTATCTAGACAC--A--TATAAAATAAATAACATG--------ACATA-----TATCTGAATCTAAATAGATTTTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGACTGATA-CATACCTACGTAGTTCTTC-CCTAAT--AAATTATAT-TCC--CATCAAGTGTGATACAGTGTta
gi|20 : GTCATTAAGGGTATTTC----GGCTAA-CTTTTT-------GCAT-GTATAC--T--GCATT--GTAGAAAA-CTAAC--
gi|21 : TCA-GTTTTT-------ACAT-TTCTAC--T--GCATT--AAATGAAT-CTAAC--ATGGCT-AT---TCT--TG----G-TT---Gg
gi|22 : CAGTCATTTAGGGTATTTC----GGGTCA-CT
gi|3 : gtaT-AT---TAT--TG----G-TT---GT---------CGGGTTGTTTTT-GGGAAAGTACATT-GTG--TGAGTAA--TAGATGTAATGCATAAAATT-G--GGATTTACTCTTCGGA-TAAAA---GATTGT--ATATGCGAG----TTTT---ATTTGTAACCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCCTTTCGTGAAACTAT-AT-AAACTTAAATAAACAGGCTC-ATAATAT--CGGTTTGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATTGTAA-TTTGAATTTGGATCAGACAAAGCATTTTTTTATTGGGACCAATGGC-TTATT-TTTTTT----AATTGA---ATACTATATACACAC-CA-AATTGTAAACGCTACGTGCA-CGCGTGCAATTTCGGAGTACTGGAAT--AAACA-CGG-GGG-AAAAT-AT--CA-GCTCCAA-TA-------------------GCACATTCTCGTAATTT---ACTTAAATAAATATATGCAAGTAATTATAATATAATATACTTATTTGAAACAAT-GATATTTTTCAATGTA--AAATAAAAATAATAC---AC-ACATAT-TACAACTTTGAG--A--AATGTAAAGGCCTATGTTTTAAATAAA-TA-AAAACA------AT----GA---CTTGATTTATCTAGACTC--AT-T---AAAT-AATAACATGATAATA-TACATGCATGTTATCTGAAT-TAAATAGACT-TCGATCTGATC-TGGTCCCACATTTTTCTACGAGAGATACATA--A---GTACGTAGTTCTTAACCTAAT---AAT--TGT-TCCCTCATCAGGTGTGAT-CAGTGT
gi|4 : tcGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTT-GAATGTGT-TCAGA-AAAGCATTTT-TTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATG-TATATACTCACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTAGATC--AAACA-TGG-GAT-AAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTT-C-ACTTAAATAAATATATGCAA--CATTACGATAT-ATATACTTATTTGAAACAAT-G-TATTTTTCAATGTAGC-AATAAAAACAATATACAAC-AC-TATAT-GAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--ATATATAAAATAAATAACATGA--ATATTACATG-----TATCTGAATCTAAATAGACT-TCAATCTGATC-T-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTTCTCACCTAAT--AAATCATA--TACCTCATCAGGTGTGATACAGTG
gi|5 : -CTTTGT-------ACATCTTGTAC-------AT---AGAGAAAA-CGAA----------------AT--TGCCCCG-TTCAAGT---------TGAGT-GTTATT-GGGAA-GTAGATT-ATG--TGAGTTAA-TAGATGTA-TGGATCGAATT-A--TG-TTTAC-CTTCG-A-TAAAA--CGATTCT--A-ATGCAAGCTAGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-AC--C-T-GGTTATTTCGAGTCACTTCTTGAAACTAT-ATAAAACCTAAATAAA-AAGCTCAATAATAT--TGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAGGCA--TTTTTATT-GGACAAATGGC-GCA---TTTTTA----AATTG-TACACGC
gi|6 : tttaaaaggtttctgctacttgtttgcTTC----GGGTTAACTTA---------ACAT-GTATAC--TTGGAATT--GTAGAACA-CTAACTCGAGGTT-GTATCTGTGGTG----G-TT---GTGGTATTATTTGGGT-GTTATT-GGGAT-GTATATT-ATC--TGACTAAA-CAGAC-----GTAT-GAAAT-G----------------------AA--CGACGG---------GAG----GCTT---ATTT--------TGATC----GAATTGCGGGTC-ACTTC-C-GGT-ATTTTGAGTCA------------------------AAATAAA-AGGCTGAATAATATACCGTTTTATGATCAAACTTAAGTAAT----ATT-GC-TATTAGCT-T-ATTTTCGGTTTTA-TCAGA-GATGTA--TTTTTATT-GAACAGA-GACTTTATT-TTTgtg
gi|7 : gtaccaagtagaggttttaAACAATTGATATTTTTC----TAACAA-TAAAAATAATACA---------------AAC-T---GAGA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATCTAGACTC--AT-------------------AT-ATA-TAC-----------CTGAATCTATATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATATACA-TAGATGTACGTAGTTCTTCAGCTAAT--AAATTATATATTCCTCATCAGTTGTGATACAGTGTa
gi|8 : TTC----GGGT-A-CTTTT--------ACAT-TTATACCGT--GCATCTCAAATAAA--CTAAC--CAAGTTCAT---TAT--TG----GGTT---TT---------CGGGC-GTTTTT-GGAAG-TTACACT-ATG--GGAGTAAA-TAGATGTA-TG--TC-AATT-ATTGG-TTTAC-CTTCG-ATTAAAA--CGATTGTAAA-ATGCGAG----TTTCTAAATTTGTA-CCTCCGATT--AAGTA-TGC-GATC-ACTTCAC-G--TATTTCGA-TCACTTCGT-GAAa
gi|9 : GACAAATGAC-CTATT-CTTTA-----AATTGATATGT-------ACACACACA-AAT-GT-AACA-T-----------GTGT-AATACAGGGT---GGATC--AAGCA-GCC-CAACAAAATTAT--GG-CCTCCAA-TACATTAAAAAAAAAAAGTTGACACAATCCTGTAATTT-TAACAGAAGTAAATAT----AGGTCATTATATTAT-G-ATATTTATTTGAAACAAT-GAtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGCTAGTTAGGTGATCACATGGATCATATTGTCATGCATGTTATCTAAGTGAAATATAATCCGACCTGAGCTG
Alignments
lowQualScore : 1111 1111111 11111 2222222222 222222222222222222222222222 1111 2222 1111 111 11 1 11111 11 111 55555555555555555555 111 1 33333333333333333 1111 2222222 111 11111 1 2 111
lowQualScore : 0000 0 4 4444444 4 1 44444 66 4 66 4 777 66 9999 4 777 1111111111 5 1 5 4 4 66 4 0 4 5 0 4 444444444444444444444444444 66 5 0000 888 5 88 6 6 6 1 2 5 2222 8 99 3 4444 6 6 6 777 3 3 77 6 88 6 5 0 77777 66 6 6 6 5 5 66 5 5 333 5 77 5 5 55555555555555555555 333 66 66 8 0 5 4 7 1 88888888888888888 5 0 77 5 9999 0000 1111111 1 1 000 5 44444 3 8 8 8 1 0 5 1 0 111 6 88 0
lowQualScore : .... . . ....... . . ..... .. . .. . ... .. .... . ... .......... . . . . . .. . . . . . . ........................... .. . .... ... . .. . . . . . . .... . .. . .... . . . ... . . .. . .. . . . ..... .. . . . . . .. . . ... . .. . . .................... ... .. .. . . . . . . ................. . . .. . .... .... ....... . . ... . ..... . . . . . . . . . ... . .. .
lowQualScore : 6666 1 0 4444444 4 0 11111 11 4 11 4 888 11 4444 4 888 1111111111 0 0 0 4 4 11 4 7 4 3 1 4 888888888888888888888888888 99 0 6666 888 7 33 7 7 7 0 5 6 4444 0 22 2 2222 7 7 7 222 2 2 77 7 55 7 0 0 66666 77 7 7 7 7 7 99 0 0 000 7 99 7 7 00000000000000000000 111 33 44 0 8 7 2 3 3 88888888888888888 7 7 99 0 2222 6666 6666666 4 4 777 7 33333 2 0 0 0 4 0 6 4 8 888 4 88 8
consensus : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
Reference ( family-11819 ) : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
gi|1 : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTATAC--T--GCATT--AAATAAAA-CTAAT--AAGGTT-AT---TAT--TG----G-TT---GT---------TGG-T-GTTTTT-GGCAA-GTACATT-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATT-G--AG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTAGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAAC-ATAATAAAACCTAAATAAA-AGGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATGTGT-TCAGA-AAAGCA--TTTTTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATGTTATATACTCACACA-AATTGT-AACG-TACGGTCA-CGCGTGC-ATTTCGGAGTA-TAGATC--AAACATGGT-GAA-TAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTTCC-ACTT-AATAAATATA-GCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATA-TTTTCAATGTAGCAAATAAAACAAATATACAACAAC-ATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATAT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCAATCTGATCTT-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTCTTCACCTAATAAAAATCATAT-ACCCTCATCAGGTGTGATACAGTGT
gi|10 : TTTAGGGTATTTC----GGGTCA-CTTTTTTAGTTTTACAT-TTCTAC-----GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------TGAGT-GTTATT--GGAA-GTACATCAACG--TGAGTAAACCAGACGTA-TGGATCGAATT-G--G--------TTTC-----------------T--A-ATGCG----AGTTTT---ATTT
gi|11 : -GATATTTTTCAATCAAACAA-TAAAAATAATACA-----------------AC-TTGAGAAA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATTTAGACTC---C-GATAAAATAAATA--ATGAC--TG-TACATG-----Tactctagtattagg
gi|12 : TAGGGTATTTATATAGGGTCT-CTTTTT-------ACAT-TTTTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TA---G----------------GTTGTT-GGGTA-G-----T-GTGACTGAGTAAA-TAGATGTA-TGGATTGAATT-
gi|13 : GGC-CTCTT-GTTTTA----AATTGATATAT-CTATATACACACACA-GATTGT-AACG-TACTTGCA-CGCGTGG-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-A
gi|14 : tgATGTTTTAAATAAAGTG-AAAATAAA---CAT----TGAGCCTTGTTTTATCTACACTC--A--TATAAAATAAATGACATGAT-ATA-TACATG-----TATCTGAATCTAAA
gi|15 : ACATGTAACGTG-GC-ATTTCGGAGTACTGGATC---GACA-GGG-G---GAAAT-AT--CGCGCTCAAT-TA-------------------ATACATTCTCGTACTTT-C-ACT
gi|16 : GAA-GTGCATT-ACG--T----AAA-CAGACGTA-TGAATCGAATT-G--GG-TT--------------------AATTCT--A-ATGCG----AGATTT---ATTTGTA-CCTCTAAT
gi|18 : AAC-TT-AGAAATGCATGTAAAGACCTATATTCCATATAAAGTGAAAAATGAATTTCAT----GGAAat
gi|19 : AGTACTGGATC--GAACA-GGG-G-G-GAAAT-ATCGCG-GCTCCAATTA-------------------ATACATTCTCGTACTTT-C-ACCTAattgtcatttt
gi|2 : TAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTCTAC--T--GCATT--AAATAAAAACTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTTTTTGGGAA-GTACATA-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATTTG--GG-TTTAC--TTCG-A-TAAAAAACGATTGT--A-ATGCG----AGTTTT---ATTTGTG-CCTCCGATTTGGGGTATTGGGGGTCCACTTC-CCGGTTATTTCGAGTCACTTCGTGAAACTATA-TAAAACCTAAATAAA-AGGCTCAATAAAAT--CGTTTGGTGAACAGA-TTAGAAATACTTCATTTGCGTA-TAATT--------GAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTCTT-TTTTTTTTTAAATTGATATATG-TATATACACACACACAATT-T-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATTCAAAACT-GGGCGGA-AAAAT-AT--CA-GCTCCAA-TAG------------------ATACATCTTCGTAATTT-T-ACT--AATAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAAC-ACTAAAAATAAT--GCAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGT-AACGCCTATGTTATAAATAAAGTG-AAAATAAA---CATTCAAGGAACCTTGTTTTATCTAGACAC--A--TATAAAATAAATAACATG--------ACATA-----TATCTGAATCTAAATAGATTTTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGACTGATA-CATACCTACGTAGTTCTTC-CCTAAT--AAATTATAT-TCC--CATCAAGTGTGATACAGTGTta
gi|20 : GTCATTAAGGGTATTTC----GGCTAA-CTTTTT-------GCAT-GTATAC--T--GCATT--GTAGAAAA-CTAAC--
gi|21 : TCA-GTTTTT-------ACAT-TTCTAC--T--GCATT--AAATGAAT-CTAAC--ATGGCT-AT---TCT--TG----G-TT---Gg
gi|22 : CAGTCATTTAGGGTATTTC----GGGTCA-CT
gi|3 : gtaT-AT---TAT--TG----G-TT---GT---------CGGGTTGTTTTT-GGGAAAGTACATT-GTG--TGAGTAA--TAGATGTAATGCATAAAATT-G--GGATTTACTCTTCGGA-TAAAA---GATTGT--ATATGCG----AGTTTT---ATTTGTAACCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCCTTTCGTGAAACTAT-AT-AAACTTAAATAAACAGGCTC-ATAATAT--CGGTTTGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATTGTAA-TTTGAATTTGGATCAGACAAAGCATTTTTTTATTGGGACCAATGGC-TTATT-TTTTTT----AATTGA---ATACTATATACACAC-CA-AATTGTAAACGCTACGTGCA-CGCGTGCAATTTCGGAGTACTGGAAT--AAACA-CGG-GGG-AAAAT-AT--CA-GCTCCAA-TA-------------------GCACATTCTCGTAATTT---ACTTAAATAAATATATGCAAGTAATTATAATATAATATACTTATTTGAAACAAT-GATATTTTTCAATGTA--AAATAAAAATAATAC---AC-AC-ATAT-TACAACTTTGAG--A--AATGTAAAGGCCTATGTTTTAAATAAA-TA-AAAACA------AT----GA---CTTGATTTATCTAGACTC--AT-T---AAAT-AATAACATGATAATA-TACATGCATGTTATCTGAAT-TAAATAGACT-TCGATCTGATC-TGGTCCCACATTTTTCTACGAGAGATACATA--A---GTACGTAGTTCTTAACCTAAT---AAT--TGT-TCCCTCATCAGGTGTGAT-CAGTGT
gi|4 : tcGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTT-GAATGTGT-TCAGA-AAAGCATTTT-TTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATG-TATATACTCACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTAGATC--AAACA-TGG-GAT-AAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTT-C-ACTTAAATAAATATATGCAA--CATTACGATAT-ATATACTTATTTGAAACAAT-G-TATTTTTCAATGTAGC-AATAAAAACAATATACAAC-ACTATAT---GAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--ATATATAAAATAAATAACATGA--ATATTACATG-----TATCTGAATCTAAATAGACT-TCAATCTGATC-T-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTTCTCACCTAAT--AAATCATA--TACCTCATCAGGTGTGATACAGTG
gi|5 : -CTTTGT-------ACATCTTGTAC-------AT---AGAGAAAA-CGAA----------------AT--TGCCCCG-TTCAAGT---------TGAGT-GTTATT-GGGAA-GTAGATT-ATG--TGAGTTAA-TAGATGTA-TGGATCGAATT-A--TG-TTTAC-CTTCG-A-TAAAA--CGATTCT--A-ATGCAAGCTAGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-AC--C-T-GGTTATTTCGAGTCACTTCTTGAAACTAT-ATAAAACCTAAATAAA-AAGCTCAATAATAT--TGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAGGCA--TTTTTATT-GGACAAATGGC-GCA---TTTTTA----AATTG-TACACGC
gi|6 : tttaaaaggtttctgctacttgtttgcTTC----GGGTTAACTTA---------ACAT-GTATAC--TTGGAATT--GTAGAACA-CTAACTCGAGGTT-GTATCTGTGGTG----G-TT---GTGGTATTATTTGGGT-GTTATT-GGGAT-GTATATT-ATC--TGACTAAA-CAGAC-----GTAT-GAAAT-G----------------------AA--CGACGG---------G----AGGCTT---ATTT--------TGATC----GAATTGCGGGTC-ACTTC-C-GGT-ATTTTGAGTCA------------------------AAATAAA-AGGCTGAATAATATACCGTTTTATGATCAAACTTAAGTAAT----ATT-GC-TATTAGCT-T-ATTTTCGGTTTTA-TCAGA-GATGTA--TTTTTATT-GAACAGA-GACTTTATT-TTTgtg
gi|7 : gtaccaagtagaggttttaAACAATTGATATTTTTC----TAACAA-TAAAAATAATACA----------------AAC-T---GAGA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATCTAGACTC--AT-------------------AT-ATA-TAC-----------CTGAATCTATATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATATACA-TAGATGTACGTAGTTCTTCAGCTAAT--AAATTATATATTCCTCATCAGTTGTGATACAGTGTa
gi|8 : TTC----GGGT-A-CTTTT--------ACAT-TTATACCGT--GCATCTCAAATAAA--CTAAC--CAAGTTCAT---TAT--TG----GGTT---TT---------CGGGC-GTTTTT-GGAAG-TTACACT-ATG--GGAGTAAA-TAGATGTA-TG--TC-AATT-ATTGG-TTTAC-CTTCG-ATTAAAA--CGATTGTAAA-ATGCG----AGTTTCTAAATTTGTA-CCTCCGATT--AAGTA-TGC-GATC-ACTTCAC-G--TATTTCGA-TCACTTCGTGAAa
gi|9 : GACAAATGAC-CTATT-CTTTA-----AATTGATATGT-------ACACACACA-AAT-GT-AACA-T-----------GTGT-AATACAGGGT---GGATC--AAGCA-GCC-CAACAAAATTAT--GG-CCTCCAA-TACATTAAAAAAAAAAAGTTGACACAATCCTGTAATTT-TAACAGAAGTAAATAT----AGGTCATTATATTAT-G-ATATTTATTTGAAACAAT-GAtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGCTAGTTAGGTGATCACATGGATCATATTGTCATGCATGTTATCTAAGTGAAATATAATCCGACCTGAGCTG
Alignments
lowQualScore : 1111 1111111 11111 2222222222 222222222222222222222222222 1111 2222 1111 111 11 1 11111 11 111 55555555555555555555 111 1 33333333333333333 1111 2222222 111 11111 1 2 111
lowQualScore : 0000 0 4 4444444 4 1 44444 66 4 66 4 777 66 9999 4 777 1111111111 5 1 5 4 4 66 4 0 4 5 0 4 444444444444444444444444444 66 5 0000 888 5 88 6 6 6 1 2 5 2222 8 99 3 4444 6 6 6 777 3 3 77 6 88 6 5 0 77777 66 6 6 6 5 5 66 5 5 333 5 77 5 5 55555555555555555555 333 66 66 8 0 5 4 7 1 88888888888888888 5 0 77 5 9999 0000 1111111 1 1 000 5 44444 3 8 8 8 1 0 5 1 0 111 6 88 0
lowQualScore : .... . . ....... . . ..... .. . .. . ... .. .... . ... .......... . . . . . .. . . . . . . ........................... .. . .... ... . .. . . . . . . .... . .. . .... . . . ... . . .. . .. . . . ..... .. . . . . . .. . . ... . .. . . .................... ... .. .. . . . . . . ................. . . .. . .... .... ....... . . ... . ..... . . . . . . . . . ... . .. .
lowQualScore : 6666 1 0 4444444 4 0 11111 11 4 11 4 888 11 4444 4 888 1111111111 0 0 0 4 4 11 4 7 4 3 1 4 888888888888888888888888888 99 0 6666 888 7 33 7 7 7 0 5 6 4444 0 22 2 2222 7 7 7 222 2 2 77 7 55 7 0 0 66666 77 7 7 7 7 7 99 0 0 000 7 99 7 7 00000000000000000000 111 33 44 0 8 7 2 3 3 88888888888888888 7 7 99 0 2222 6666 6666666 4 4 777 7 33333 2 0 0 0 4 0 6 4 8 888 4 88 8
consensus : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
Reference ( family-11819 ) : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
gi|1 : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTATAC--T--GCATT--AAATAAAA-CTAAT--AAGGTT-AT---TAT--TG----G-TT---GT---------TGG-T-GTTTTT-GGCAA-GTACATT-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATT-G--AG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTAGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGT-AAAC-ATAATAAAACCTAAATAAA-AGGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATGTGT-TCAGA-AAAGCA--TTTTTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATGTTATATACTCACACA-AATTGT-AACG-TACGGTCA-CGCGTGC-ATTTCGGAGTA-TAGATC--AAACATGGT-GAA-TAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTTCC-ACTT-AATAAATATA-GCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATA-TTTTCAATGTAGCAAATAAAACAAATATACAACAAC-ATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATAT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCAATCTGATCTT-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTCTTCACCTAATAAAAATCATAT-ACCCTCATCAGGTGTGATACAGTGT
gi|10 : TTTAGGGTATTTC----GGGTCA-CTTTTTTAGTTTTACAT-TTCTAC-----GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------TGAGT-GTTATT--GGAA-GTACATCAACG--TGAGTAAACCAGACGTA-TGGATCGAATT-G--G--------TTTC-----------------T--A-ATGCG----AGTTTT---ATTT
gi|11 : -GATATTTTTCAATCAAACAA-TAAAAATAATACA-----------------AC-TTGAGAAA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATTTAGACTC---C-GATAAAATAAATA--ATGAC--TG-TACATG-----Tactctagtattagg
gi|12 : TAGGGTATTTATATAGGGTCT-CTTTTT-------ACAT-TTTTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TA---G----------------GTTGTT-GGGTA-G-----T-GTGACTGAGTAAA-TAGATGTA-TGGATTGAATT-
gi|13 : GGC-CTCTT-GTTTTA----AATTGATATAT-CTATATACACACACA-GATTGT-AACG-TACTTGCA-CGCGTGG-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-A
gi|14 : tgATGTTTTAAATAAAGTG-AAAATAAA---CAT----TGAGCCTTGTTTTATCTACACTC--A--TATAAAATAAATGACATGAT-ATA-TACATG-----TATCTGAATCTAAA
gi|15 : ACATGTAACGTG-GC-ATTTCGGAGTACTGGATC---GACA-GGG-G---GAAAT-AT--CGCGCTCAAT-TA-------------------ATACATTCTCGTACTTT-C-ACT
gi|16 : GAA-GTGCATT-ACG--T----AAA-CAGACGTA-TGAATCGAATT-G--GG-TT--------------------AATTCT--A-ATGCG----AGATTT---ATTTGTA-CCTCTAAT
gi|18 : AAC-TT-AGAAATGCATGTAAAGACCTATATTCCATATAAAGTGAAAAATGAATTTCAT----GGAAat
gi|19 : AGTACTGGATC--GAACA-GGG-G-G-GAAAT-ATCGCG-GCTCCAATTA-------------------ATACATTCTCGTACTTT-C-ACCTAattgtcatttt
gi|2 : TAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTCTAC--T--GCATT--AAATAAAAACTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTTTTTGGGAA-GTACATA-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATTTG--GG-TTTAC--TTCG-A-TAAAAAACGATTGT--A-ATGCG----AGTTTT---ATTTGTG-CCTCCGATTTGGGGTATTGGGGGTCCACTTC-CCGGTTATTTCGAGTCACTTCGTGAAACTATA-TAAAACCTAAATAAA-AGGCTCAATAAAAT--CGTTTGGTGAACAGA-TTAGAAATACTTCATTTGCGTA-TAATT--------GAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTCTT-TTTTTTTTTAAATTGATATATG-TATATACACACACACAATT-T-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATTCAAAACT-GGGCGGA-AAAAT-AT--CA-GCTCCAA-TAG------------------ATACATCTTCGTAATTT-T-ACT--AATAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAAC-ACTAAAAATAAT--GCAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGT-AACGCCTATGTTATAAATAAAGTG-AAAATAAA---CATTCAAGGAACCTTGTTTTATCTAGACAC--A--TATAAAATAAATAACATG--------ACATA-----TATCTGAATCTAAATAGATTTTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGACTGATA-CATACCTACGTAGTTCTTC-CCTAAT--AAATTATAT-TCC--CATCAAGTGTGATACAGTGTta
gi|20 : GTCATTAAGGGTATTTC----GGCTAA-CTTTTT-------GCAT-GTATAC--T--GCATT--GTAGAAAA-CTAAC--
gi|21 : TCA-GTTTTT-------ACAT-TTCTAC--T--GCATT--AAATGAAT-CTAAC--ATGGCT-AT---TCT--TG----G-TT---Gg
gi|22 : CAGTCATTTAGGGTATTTC----GGGTCA-CT
gi|3 : gtaT-AT---TAT--TG----G-TT---GT---------CGGGTTGTTTTT-GGGAAAGTACATT-GTG--TGAGTAA--TAGATGTAATGCATAAAATT-G--GGATTTACTCTTCGGA-TAAAA---GATTGT--ATATGCG----AGTTTT---ATTTGTAACCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCCTTTCGTGAAACTAT-AT-AAACTTAAATAAACAGGCTC-ATAATAT--CGGTTTGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATTGTAA-TTTGAATTTGGATCAGACAAAGCATTTTTTTATTGGGACCAATGGC-TTATT-TTTTTT----AATTGA---ATACTATATACACAC-CA-AATTGTAAACGCTACGTGCA-CGCGTGCAATTTCGGAGTACTGGAAT--AAACA-CGG-GGG-AAAAT-AT--CA-GCTCCAA-TA-------------------GCACATTCTCGTAATTT---ACTTAAATAAATATATGCAAGTAATTATAATATAATATACTTATTTGAAACAAT-GATATTTTTCAATGTA--AAATAAAAATAATAC---AC-AC-ATAT-TACAACTTTGAG--A--AATGTAAAGGCCTATGTTTTAAATAAA-TA-AAAACA------AT----GA---CTTGATTTATCTAGACTC--AT-T---AAAT-AATAACATGATAATA-TACATGCATGTTATCTGAAT-TAAATAGACT-TCGATCTGATC-TGGTCCCACATTTTTCTACGAGAGATACATA--A---GTACGTAGTTCTTAACCTAAT---AAT--TGT-TCCCTCATCAGGTGTGAT-CAGTGT
gi|4 : tcGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTT-GAATGTGT-TCAGA-AAAGCATTTT-TTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATG-TATATACTCACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTAGATC--AAACA-TGG-GAT-AAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTT-C-ACTTAAATAAATATATGCAA--CATTACGATAT-ATATACTTATTTGAAACAAT-G-TATTTTTCAATGTAGC-AATAAAAACAATATACAAC-ACTATAT---GAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--ATATATAAAATAAATAACATGA--ATATTACATG-----TATCTGAATCTAAATAGACT-TCAATCTGATC-T-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTTCTCACCTAAT--AAATCATA--TACCTCATCAGGTGTGATACAGTG
gi|5 : -CTTTGT-------ACATCTTGTAC-------AT---AGAGAAAA-CGAA----------------AT--TGCCCCG-TTCAAGT---------TGAGT-GTTATT-GGGAA-GTAGATT-ATG--TGAGTTAA-TAGATGTA-TGGATCGAATT-A--TG-TTTAC-CTTCG-A-TAAAA--CGATTCT--A-ATGCAAGCTAGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-AC--C-T-GGTTATTTCGAGTCACTTCTTGAAACTAT-ATAAAACCTAAATAAA-AAGCTCAATAATAT--TGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAGGCA--TTTTTATT-GGACAAATGGC-GCA---TTTTTA----AATTG-TACACGC
gi|6 : tttaaaaggtttctgctacttgtttgcTTC----GGGTTAACTTA---------ACAT-GTATAC--TTGGAATT--GTAGAACA-CTAACTCGAGGTT-GTATCTGTGGTG----G-TT---GTGGTATTATTTGGGT-GTTATT-GGGAT-GTATATT-ATC--TGACTAAA-CAGAC-----GTAT-GAAAT-G----------------------AA--CGACGG---------G----AGGCTT---ATTT--------TGATC----GAATTGCGGGTC-ACTTC-C-GGT-ATTTTGAGTCA------------------------AAATAAA-AGGCTGAATAATATACCGTTTTATGATCAAACTTAAGTAAT----ATT-GC-TATTAGCT-T-ATTTTCGGTTTTA-TCAGA-GATGTA--TTTTTATT-GAACAGA-GACTTTATT-TTTgtg
gi|7 : gtaccaagtagaggttttaAACAATTGATATTTTTC----TAACAA-TAAAAATAATACA----------------AAC-T---GAGA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATCTAGACTC--AT-------------------AT-ATA-TAC-----------CTGAATCTATATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATATACA-TAGATGTACGTAGTTCTTCAGCTAAT--AAATTATATATTCCTCATCAGTTGTGATACAGTGTa
gi|8 : TTC----GGGT-A-CTTTT--------ACAT-TTATACCGT--GCATCTCAAATAAA--CTAAC--CAAGTTCAT---TAT--TG----GGTT---TT---------CGGGC-GTTTTT-GGAAG-TTACACT-ATG--GGAGTAAA-TAGATGTA-TG--TC-AATT-ATTGG-TTTAC-CTTCG-ATTAAAA--CGATTGTAAA-ATGCG----AGTTTCTAAATTTGTA-CCTCCGATT--AAGTA-TGC-GATC-ACTTCAC-G--TATTTCGA-TCACTTCGTGAAa
gi|9 : GACAAATGAC-CTATT-CTTTA-----AATTGATATGT-------ACACACACA-AAT-GT-AACA-T-----------GTGT-AATACAGGGT---GGATC--AAGCA-GCC-CAACAAAATTAT--GG-CCTCCAA-TACATTAAAAAAAAAAAGTTGACACAATCCTGTAATTT-TAACAGAAGTAAATAT----AGGTCATTATATTAT-G-ATATTTATTTGAAACAAT-GAtc
blockSeqs : TATA A TAGTTTT C C TTG TC A TC C ATC GG CCCC G CAA GGTATTATTT T A T A A AC C A G T TTGGTTTACCTTCGATTAAAAC AA T AGCT TAA A TG C A C C G T ATA C AC A CTTC T G T GTA T T GA C TT G T G TTTTA AC C A C A A CA . C AAC T CG C T ACATTAAAAAAAAAAAGTTG TA TA AT A T A A C GCAACACATATTAG T TG A ATTT TCAA ATATA A A TAA T CATGT T . G C T C T T A T TA
blockSeqs : . . . . T CGT . . . . . . . . . T . G . . . . . . G . GGATTTACTCTTCGGATAAAA . . . . . TG . . . T G T ATA . . A . . . . TA T T G . TT . . . A GC . . . . . . . . AA . . . . AG C TA AT . . A A A ACAACACTATATG . . . T . CGA A A TA . . C . . . T . T T A C T
blockSeqs : . . . . C T . . . . . . . . . C . T . . . . . . A . GGTTTACTTCGATAAAAAAC . . . . . TG . . . C G T AT . . A . . . . T T T T . TT . . . T C . . . . . . . . GA . . . . A C TA AT . . G A A ACACATATTAC . . . A . ATA A A TA . . . . . . A . G A A T T
blockSeqs : . . . . A T . . . . . . . . . C . T . . . . . . C . TGTTTACCTTCGATAAAAC . . . . . . . . . C G . . . . C . . . . T . . G . . . . . T G . . . . . . . . GG . . . . A T GA . . . A . . A . . . A . ATA A A C . . . . . . T . . T . . .
blockSeqs : . . . . C T . . . . . . . . . T . A . . . . . . C . GTTTC . . . . . . . . . . . . . . . . . . . . A . . . . . A G . . . . . . . . AT . . . . A C . . . . . A . . . A . ATT . . A . .
blockSeqs : . . . . G T . . . . . . . . . C . A . . . . . . G . GGTT . . . . . . . . . . . . . . G . . . . . . . . . . T . AT . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . T . . . . . . T . AAC . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : GGTTTACTTCGATAAAAC********* AT** T** TT GC A******************* C** TA AT ACAACACTA******** ATA**** TA* A**
originalCons : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTAC-CTTCG-A-TAAAA--CGATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAAC-AC-ATAT-TAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--AT-TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
finalCons : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-GGGTTTACTTCGATAAAAC---------GATTGT--A-ATGCG----AGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAAACTATAT--AAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATTT--ATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTTC--ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATACACAACACTA--------AAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATA----TAAAATAAATAACATGATA-TA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAATA--AATCATAT-TCCCTCATCAGGTGTGATACAGTGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGCTAGTTAGGTGATCACATGGATCATATTGTCATGCATGTTATCTAAGTGAAATATAATCCGACCTGAGCTG
Alignments
lowQualScore : 1111 1111111 11111 2222222222 33333333333333333333333333333 1111 1 1111 111 11 1 11111 11 111 55555555555555555555 111 1 7777777777777777 1111 111111 1111 11111 1 2 111
lowQualScore : 0000 0 4 4444444 4 1 44444 66 4 66 4 777 66 9999 4 777 1111111111 5 1 5 4 4 66 4 0 4 6 4 66666666666666666666666666666 66 5 0000 888 5 88 6 6 6 1 6 1 5 6 8 99 3 4444 6 6 6 222 3 77 6 88 6 5 0 77777 66 6 6 6 5 5 66 5 5 333 5 77 5 5 55555555555555555555 333 66 66 8 0 5 4 7 1 6 1111111111111111 5 0 77 5 9999 0000 222222 1 1 9999 5 44444 3 8 8 8 1 0 5 1 0 111 6 88 0
lowQualScore : .... . . ....... . . ..... .. . .. . ... .. .... . ... .......... . . . . . .. . . . . . ............................. .. . .... ... . .. . . . . . . . . . .. . .... . . . ... . .. . .. . . . ..... .. . . . . . .. . . ... . .. . . .................... ... .. .. . . . . . . . ................ . . .. . .... .... ...... . . .... . ..... . . . . . . . . . ... . .. .
lowQualScore : 6666 1 0 4444444 4 0 11111 11 4 11 4 888 11 4444 4 888 1111111111 0 0 0 4 4 11 4 7 4 9 4 00000000000000000000000000000 99 0 6666 888 7 33 7 7 7 0 7 0 6 0 0 22 2 2222 7 7 7 555 7 77 7 55 7 0 0 66666 77 7 7 7 7 7 99 0 0 000 7 99 7 7 00000000000000000000 111 33 44 0 8 7 2 3 3 7 1111111111111111 7 7 99 0 2222 6666 333333 4 4 0000 7 33333 2 0 0 0 4 0 6 4 8 888 4 88 8
consensus : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTA-C-T--TCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAA-ACTATATAAAACCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATAC-ACA-ACA-TA-------AAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--A---TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
Reference ( family-11819 ) : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTNTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTNTT-GGGAA-GTACATT-ATG--TGAGTAAA-TAGACGTA-TGNATCGAATT-G--GG-TTTA-C-T--TCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTGAA-ACTATATAAA-CCTAAATAAA-AGGCTCAATAATAT--CGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTATT-TTTTTT----AATTGATATATGCTATATACACACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-AAAAT-AT--CG-GCTCCAA-TA-------------------ACACATTCTCGTAATTT-C-ACTTAAATAAATATATGCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAACAAATAAAAATAATAC-ACA-ACACTA-------AAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--A---TATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATACATACCATACGTACGTAGTTCTTCACCTAAT--AAATCATAT-TCCCTCATCAGGTGTGATACAGTGT
gi|1 : CAGTCATTTAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTATAC--T--GCATT--AAATAAAA-CTAAT--AAGGTT-AT---TAT--TG----G-TT---GT---------TGG-T-GTTTTT-GGCAA-GTACATT-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATT-G--AG-TTTA-CCT--TCG-A-TAAAA--CGATTGT--A-ATGCGAG----TTTT---ATTTGTA-CCTCCGATTTAGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCACTTCGTAAACATAATA-AAA-CCTAAATAAA-AGGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-TAATTTTGAATGTGT-TCAGA-AAAGCA--TTTTTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATGTTATATACTCACACA-AATTGT-AACG-TACGGTCA-CGCGTGC-ATTTCGGAGTA-TAGATC--AAACATGGT-GAA-TAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTTCC-ACTT-AATAAATATA-GCAAGTCATTACGATAT-ATATACTTATTTGAAACAAT-GATA-TTTTCAATGTAGCAAATAAAACAAATAT-ACA-ACAACATATATAGAAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTC--ATATTATAAAATAAATAACATGAT-ATA-TACATG-----TATCTGAATCTAAATAGACTCTCAATCTGATCTT-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTCTTCACCTAATAAAAATCATAT-ACCCTCATCAGGTGTGATACAGTGT
gi|10 : TTTAGGGTATTTC----GGGTCA-CTTTTTTAGTTTTACAT-TTCTAC-----GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------TGAGT-GTTATT--GGAA-GTACATCAACG--TGAGTAAACCAGACGTA-TGGATCGAATT-G--G-------T-T--TC-----------------T--A-ATGCGAG----TTTT---ATTT
gi|11 : -GATATTTTTCAATCAAACAA-TAAAAATAATAC-A-----------------AC-TTGAGAAA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATTTAGACTC--C---GATAAAATAAATA--ATGAC--TG-TACATG-----Tactctagtattagg
gi|12 : TAGGGTATTTATATAGGGTCT-CTTTTT-------ACAT-TTTTAC--T--GCATT--AAATAAAA-CTAAC--AAGGTT-AT---TAT--TG----G-TA---G----------------GTTGTT-GGGTA-G-----T-GTGACTGAGTAAA-TAGATGTA-TGGATTGAATT-
gi|13 : GGC-CTCTT-GTTTTA----AATTGATATAT-CTATATACACACACA-GATTGT-AACG-TACTTGCA-CGCGTGG-ATTTCGGAGTACTGGATC--AAACA-GGG-GAA-A
gi|14 : tgATGTTTTAAATAAAGTG-AAAATAAA---CAT----TGAGCCTTGTTTTATCTACACTC--A---TATAAAATAAATGACATGAT-ATA-TACATG-----TATCTGAATCTAAA
gi|15 : ACATGTAACGTG-GC-ATTTCGGAGTACTGGATC---GACA-GGG-G---GAAAT-AT--CGCGCTCAAT-TA-------------------ATACATTCTCGTACTTT-C-ACT
gi|16 : GAA-GTGCATT-ACG--T----AAA-CAGACGTA-TGAATCGAATT-G--GG-TT----------------------AATTCT--A-ATGCGAG----ATTT---ATTTGTA-CCTCTAAT
gi|18 : -------AAC-TT-AGAAATGCATGTAAAGACCTATATTCCATATAAAGTGAAAAATGAATTTCAT----GGAAat
gi|19 : AGTACTGGATC--GAACA-GGG-G-G-GAAAT-ATCGCG-GCTCCAATTA-------------------ATACATTCTCGTACTTT-C-ACCTAattgtcatttt
gi|2 : TAGGGTATTTC----GGGTCA-CTTTTT-------ACAT-TTCTAC--T--GCATT--AAATAAAAACTAAC--AAGGTT-AT---TAT--TG----G-TT---GT---------CGGGT-GTTTTTTGGGAA-GTACATA-ATG--TGAGTAAA-TAGATGTA-TGCATCGAATTTG--GG-TTTA-C-T--TCG-A-TAAAAAACGATTGT--A-ATGCGAG----TTTT---ATTTGTG-CCTCCGATTTGGGGTATTGGGGGTCCACTTC-CCGGTTATTTCGAGTCACTTCGTGAA-ACTATATAAAACCTAAATAAA-AGGCTCAATAAAAT--CGTTTGGTGAACAGA-TTAGAAATACTTCATTTGCGTA-TAATT--------GAATTTGG-TCAGA-AAAGCATTTTTTTATT-GGACAAATGGC-TTCTT-TTTTTTTTTAAATTGATATATG-TATATACACACACACAATT-T-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTGGATTCAAAACT-GGGCGGA-AAAAT-AT--CA-GCTCCAA-TAG------------------ATACATCTTCGTAATTT-T-ACT--AATAAATATATGCAAGTCATTATAATAT-ATATACTTATTTGAAACAAT-GATATTTTTCAATGTAAC-ACTAAAAATAATGCAACACATATTAG------AAC-TTGAGAAA--AATGT-AACGCCTATGTTATAAATAAAGTG-AAAATAAA---CATTCAAGGAACCTTGTTTTATCTAGACAC--A---TATAAAATAAATAACATG--------ACATA-----TATCTGAATCTAAATAGATTTTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGACTGATA-CATACCTACGTAGTTCTTC-CCTAAT--AAATTATAT-TCC--CATCAAGTGTGATACAGTGTta
gi|20 : GTCATTAAGGGTATTTC----GGCTAA-CTTTTT-------GCAT-GTATAC--T--GCATT--GTAGAAAA-CTAAC--
gi|21 : TCA-GTTTTT-------ACAT-TTCTAC--T--GCATT--AAATGAAT-CTAAC--ATGGCT-AT---TCT--TG----G-TT---Gg
gi|22 : CAGTCATTTAGGGTATTTC----GGGTCA-CT
gi|3 : gtaT-AT---TAT--TG----G-TT---GT---------CGGGTTGTTTTT-GGGAAAGTACATT-GTG--TGAGTAA--TAGATGTAATGCATAAAATT-G--GGATTTA-C-TCTTCGGA-TAAAA---GATTGT--ATATGCGAG----TTTT---ATTTGTAACCTCCGATTTGGGGTATTGCGGGTC-ACTTC-C-GGTTATTTCGAGTCCTTTCGTGAA-ACTATATAAA-CTTAAATAAACAGGCTC-ATAATAT--CGGTTTGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATTGT-AATTTGAATTTGGATCAGACAAAGCATTTTTTTATTGGGACCAATGGC-TTATT-TTTTTT----AATTGA---ATACTATATACACAC-CA-AATTGTAAACGCTACGTGCA-CGCGTGCAATTTCGGAGTACTGGAAT--AAACA-CGG-GGG-AAAAT-AT--CA-GCTCCAA-TA-------------------GCACATTCTCGTAATTT---ACTTAAATAAATATATGCAAGTAATTATAATATAATATACTTATTTGAAACAAT-GATATTTTTCAATGTA--AAATAAAAATAATAC-ACACATATTAC------AACTTTGAG--A--AATGTAAAGGCCTATGTTTTAAATAAA-TA-AAAACA------AT----GA---CTTGATTTATCTAGACTC--A---T-T-AAAT-AATAACATGATAATA-TACATGCATGTTATCTGAAT-TAAATAGACT-TCGATCTGATC-TGGTCCCACATTTTTCTACGAGAGATACATA--A---GTACGTAGTTCTTAACCTAAT---AAT--TGT-TCCCTCATCAGGTGTGAT-CAGTGT
gi|4 : tcGCTCAATAATAT--TGTTTGGTGGATAGAATTAAAAAGA----ATT-GC-TA-TAATT-T-AATTTGAATGTGT-TCAGA-AAAGCATTTT-TTATT-GGACAAATGGC-TTATTGTTTTTT----AATTGATATATG-TATATACTCACACA-AATTGT-AACG-TACGTGCA-CGCGTGC-ATTTCGGAGTACTAGATC--AAACA-TGG-GAT-AAAAT-AT--CA-GCTCCAG-T--------------------ACACATTTTCATAATTT-C-ACTTAAATAAATATATGCAA--CATTACGATAT-ATATACTTATTTGAAACAAT-G-TATTTTTCAATGTAGC-AATAAAAACAATAT-ACA-ACACTATATG---AAC-TTGAGAAA--AATGTAAAGGCCTATGTTTTAAATAAAGTG-AAAATAAA---CAT----GGAACCTTGTTTTATCTAGACTCATA---TATAAAATAAATAACATGA--ATATTACATG-----TATCTGAATCTAAATAGACT-TCAATCTGATC-T-GTCCCA-ATTATTCTACGAGAGATACATACCATACGAACGTAGTTTCTCACCTAAT--AAATCATA--TACCTCATCAGGTGTGATACAGTG
gi|5 : -CTTTGT-------ACATCTTGTAC-------AT---AGAGAAAA-CGAA----------------AT--TGCCCCG-TTCAAGT---------TGAGT-GTTATT-GGGAA-GTAGATT-ATG--TGAGTTAA-TAGATGTA-TGGATCGAATT-A--TG-TTTA-CCT--TCG-A-TAAAA--CGATTCT--A-ATGCAAGCTAGTTTT---ATTTGTA-CCTCCGATTTGGGGTATTGCGGGTC-AC--C-T-GGTTATTTCGAGTCACTTCTTGAA-ACTATATAAAACCTAAATAAA-AAGCTCAATAATAT--TGTTTGGTGAACAGAATTAGAAAGA----ATT-GC-TA-TAATT-T-ATTTTGAATTTGG-TCAGA-AAGGCA--TTTTTATT-GGACAAATGGC-GCA---TTTTTA----AATTG-TACACGC
gi|6 : tttaaaaggtttctgctacttgtttgcTTC----GGGTTAACTTA---------ACAT-GTATAC--TTGGAATT--GTAGAACA-CTAACTCGAGGTT-GTATCTGTGGTG----G-TT---GTGGTATTATTTGGGT-GTTATT-GGGAT-GTATATT-ATC--TGACTAAA-CAGACGTA-T-----GAAAT-G------------------------AA--CGACGG---------GAG----GCTT---ATTT--------TGATC----GAATTGCGGGTC-ACTTC-C-GGT-ATTTTGAGTCA------------------------AAATAAA-AGGCTGAATAATATACCGTTTTATGATCAAACTTAAGTAAT----ATT-GC-TATTAGCT-T-ATTTTCGGTTTTA-TCAGA-GATGTA--TTTTTATT-GAACAGA-GACTTTATT-TTTgtg
gi|7 : gtaccaagtagaggttttaAACAATTGATATTTTTC----TAACAA-TAAAAATAATAC-A----------------AAC-T---GAGA--AATGTAAAGACCTATATTTAAAATAAAGTG-AAAATAAT---CAT----GGAACCTTGTCATATCTAGACTC--A---TATA------------------TA-TAC-----------CTGAATCTATATAGACTCTCGATCTGATC-T-GTCCCA-ATTTTTCTACGAGAGATATACA-TAGATGTACGTAGTTCTTCAGCTAAT--AAATTATATATTCCTCATCAGTTGTGATACAGTGTa
gi|8 : TTC----GGGT-A-CTTTT--------ACAT-TTATACCGT--GCATCTCAAATAAA--CTAAC--CAAGTTCAT---TAT--TG----GGTT---TT---------CGGGC-GTTTTT-GGAAG-TTACACT-ATG--GGAGTAAA-TAGATGTA-TG--TC-AATT-ATTGG-TTTACC-T--TCG-ATTAAAA--CGATTGTAAA-ATGCGAG----TTTCTAAATTTGTA-CCTCCGATT--AAGTA-TGC-GATC-ACTTCAC-G--TATTTCGA-TCACTTCGTGAA-a
gi|9 : GACAAATGAC-CTATT-CTTTA-----AATTGATATGT-------ACACACACA-AAT-GT-AACA-T-----------GTGT-AATACAGGGT---GGATC--AAGCA-GCC-CAACAAAATTAT--GG-CCTCCAA-TACATTAAAAAAAAAAAGTTGACACAATCCTGTAATTT-TAACAGAAGTAAATAT----AGGTCATTATATTAT-G-ATATTTATTTGAAACAAT-GAtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGCTAGTTAGGTGATCACATGGATCATATTGTCATGCATGTTATCTAAGTGAAATATAATCCGACCTGAGCTG