lowQualScore : 111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111
lowQualScore : 1 111111111111111111 22 1 22222222222 222222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 11 222 333333333333333333 2222 55555555 3333333 11 333333333 222 1 8888888888 22
lowQualScore : 6 333333333333333333 4 4 22 8 2 2 777 7 44 99 1 4 11111111111 66 666666 7 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 7777 6 3 0 1 77 7 6 77 4 3 3 00 333 55 666666666666666666 7777 4 4 99999999 0 4444444 33 222222222 000 5 1111111111 77
lowQualScore : . .................. . . .. . . . ... . .. .. . . ........... .. ...... . ................................................................................................................. .. .... . . . . .. . . .. . . . .. ... .. .................. .... . . ........ . ....... .. ......... ... . .......... ..
lowQualScore : 7 666666666666666666 0 6 33 1 5 2 666 3 77 00 2 4 11111111111 11 333333 4 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55 9999 0 7 3 4 99 3 6 22 1 6 6 00 222 55 111111111111111111 2222 4 4 88888888 2 3333333 00 000000000 333 0 5555555555 55
consensus : TTGTTACTGAAT-A-TNAGT--A-----AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAAGTGGAATTCCACACCGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TGATTGTGTGTG--AA-GTGAA---------CTACC----AAGTTGC-AAAC-ACTT---TGAAAATTAC--TTGT-AAACT--AAACACTT---AAATACCAT---TGTAAACAAGTAT--ATAGTGGAAAAAGGATTCC--AAGTAATTACTGATATTTTTGAAAA--TTTAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGTT-AAA--AAACTGTATGT--AACTGT----C---CGGTCACTTA-GGATTTAA-TTC-CATGGCCGT--TTTTGCCGAAAATCACTTGGCGTGATTTA-C-----AGGGTGCTATCAA-NCTTT---------TAC-CTCAACGATTCCCGATTTTATAAATTTGTTTTGT
Reference ( gi|1 ) : TTGTTTCTGAATTA-TTAGT--AT---TACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAAGAGGAATTCCATACTGATTTTGT-A-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGC-A-----------G--TACTA---A--TGATTGTGTGTGTTAA-TTAAAACTT-GT--CTACC----AAGTTGC-AAAC-ACTT---TAAAAATTACGATTAT-AAACTA-AAACACTGACAAAGTACCATAACTGTAAACAAGTATTAATAGTGGAAAAAGGATTTC--AAGCAGTTACTGATATTTTTGAGAA--TCTAAAGATCATGCATAGT-GATTTTCCTCA-AACTT--GAGTT-CAA--AAACTGTATGT--GACTGT-TGCCATGCAGTCACTTA-GAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATTTA-A-----AGGGTGCTATCAA-CCTTT---------TAC-CACAACCAT---TG-----ATAA--TTGTTTTGT
gi|6 : TTGTTACTGAATTC-CTAAT-----------TAACATTGTGACA-CAAATTAAATATTCAGAATAAAAGTGGAATTCCACACTGATTTTGT-A-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGC-A-----------G--TACTA---C--TGATTGTGTGTG--AA-GTGAAA--------TTACC----AAGTTGC-AAAC-ACTT---TGAAA--TACTTTTGT-AAAC
gi|2 : gacatagtgtTTGTTGCTGAAT------GC--AA---AACC-AACATTGTGAAA-CAAATTAAATATTCAGAATAAAAGAGGAATTCCACACTGATTTGGT-G-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTAC-A-----------GACTTCTA---A--TGATTGTGTGT------------------------C----AAGTTGC-AAAC-ACTTG--GAAAAAGTACaattatagtgggaatggattccaagtaatcactgatatttttgaaaatttaaagatcaagtatagtgattttctcaaacttgagt
gi|4 : atgtgttgtTTGTTACTGAAT-A-TGA----------AACTGGCATCG-GAAA-CAATT--AATATCA-GAATAAA-GTGGAATTCCATACTGATTT-GT-C-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGC-A-----------G--TACTA------TGAT----TGTG-------------T-GT--C--------AAGT-G--AAACTACC-------AAGTTGC--------------AAACACTTTGAAAATATCAT---TGTAAACAAGTAT----AGTGGAAA--GGATT-C--AA-TAATTACTGATATTTTTGAGAA--TTTAAAGA--------------------TCA-AACTT--GAGTA-AAATCAAACTGTTTGT----------------CAGTCACTTA-AGATTTAA-TTA-CATGGCCGTA---TTGCCAAAAATCACTTGGTGTGagtgggaaagggattccaagtagatgatatttttgaaaatttaaagattaagtttggtgattttgctcaaacttgaattaaaaaactgtatgtagctaggtcactaagatgtaattccatggccattttgccaacaatcacttggtgtgatttacaggatgctatcaagctttttacgctcaataattcctgattttataaatttgttttg
gi|7 : aatgacttgtgtgTTGTTACTGAATCAGTTACTGAATCAGTAATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAAGAGGAATTCCACACTGATTTGGTAA-AAA-GAAATTTAGTAATTACCGTAAAAGTTGCTAC-A-----------G--TATTT---A--TGATTGTGTGT------------------------C----AAGTTGC-AAAC-ACTT---CGAAAA-TACCATTGT-AAAC--------------AAGTA-CAT--TTGTTAATGTGTGTTTACAGTGGGAAAAGGATTTtga
gi|3 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtTTGTTACTGAAT-A-TAAGA--A-----A--TAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGATTGCACACTGATTTTGT-ACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA-----------G--TGCTA---AAGTGGCT-TGTGTCTCAA-GGAAA---------CTACC----AAGTTGC-AAAC-ACCT---TGAAAAT------------ACTA-----ATTG-----------TAACTGTA------------TAATGAAAAAAGGTTCTCAAAAATAATAACTGAT-TTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACTT---G--AAGTTTTA-AT--AACTGT----CA---GGTCACTTA-AGATTTAA-TTC-CATGGaca
gi|9 : tcatcacagatgacacatgcttgtTTGTTACTGAATC--TGA----------AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAAGTTGAATTCTCTATTGAATCTTT-A-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGC-A-----------A--TACGAC--A--T-ACTAT-TGTGT--A-TCAAG--TT-GT--T----------G-TGC--AAT-ACTTTTCTAATATTTATGACT-T-AAACTcggt
gi|17 : atgtTTGTTACTGAA-------GT--AG---AAACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAAGTGGAATTCTACACAGATTTTGT-A-AAA-G
gi|8 : ttgtCTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAAGTGGAATTCCATACAAACTGTGT------------------AC---CGTACAAGTTGCTGC-A-----------G--CACCA---A--TGACTGTGTGCAATAAGTTAAA---------CTACCG---AAGTTGA-AAAC-ACTT---ttt
gi|12 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtttgttgctgcatatgaaaCTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGAGAGGAATTCCATACTGATTTAGT-A-AAA-GAAATTTA
gi|5 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgttcgttactgaattcaaaaCATTGTAAAA-CAAATTAGATATTCAGAACAAAAGTGGAAACCGAAATCGATTTTGT-A-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGC-AATACAGTAGATG--TACTACAAA--TGATTATGTGT--CAC-GTGAAACT--------ACC----ACATTGC-A--C-AC---------AATT----------------------TGA--AAATACCA---CTGCAAACAAG----GATAGTGGAAAAAGGATTCA--AAGTAATTAC--ATATCTTTGAAAA--TTTAAAGATCAtt
gi|2 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtttgctactgaatatagaaagggGAATGCAAAACCAACATTGT-G-AAA-CAAATTAAATATTCAGAATAAAAG----AGG-A-----------A--TTCCAC--AC-TGATT-TG-GTG--AA-ATGAAATTTAGTAACTACCGTAAAAGTTGCTACAG-ACTTC--TAATGATTGTG--TGTCAAGTTGCAAACACT----------------TGGAAA-AAGTAC----AGTGGGAAAGGGATTCC--AAGTAG--A-TGATATTTTTGAAAA--TTTAAAGATTAAGTTTGGT-GATTTTGCTCA-AACTT--GAATT-AAA--AAACTGTATGT--AGCTA----------GGTCACTAA-GA-TGTAA-TTC-CATGGCCAT---TTTGCCAACAATCACTTGGTGTGATTTA-C-----AGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTGagaac
gi|19 : atgtgttgtttgttgctC----AAGTTGC-AAAC-ACTT---TGAAAA-TACCATTGC-AAAC
gi|6 : -AAACACTT-TGAAATACTTT---TGTAAACAA---TTA-TAGTGGGAAT-GGATTCC--AAGTAATCACTGATATTTTTGAAAA--TTTAAAGATCAAGTATAGT-GATTTT-CTCA-AACTT--GAGTaatcataattggaaaaggatttgaag
gi|19 : gacatagtgtttgttactgaattcctaattaacattgtgacacaaattaaatattcagaataaaagtggaattccacactgattttgtaaaataaatttgataactatcataaaagttgctgcagtactactgattgtgtgtgaagtgaaattaccaagttgc-AAACACTTTGAAAATACCAT---TGCAAACAATCAT-AAT--TGGAAAA-GGATTTG--AAG
gi|15 : caagttgcGTAAACAAGTAT----AGTGGAAAAAGGATTCC--AGGTAATTACTGATATTTTTGAAAA--TTAAAAGATCAAGTATAGT-TATTGTCCTCA-AACTT--GGGTT-AAA--A
gi|11 : TCC--AAGTAATTACTGATATTTTTGAAAA--TTCAAAGATTAGGTTTGGT-GATTTTCCTCG-AACTC--GAATTAAAA--AAACTGTATATC-GATT-----CCGT--------TTA---------------ATGGCC---GTTTTGTCAAAAATCACTT-GTGTGATTTA-C-----AGGGTGCTATCAA-GCTTT---------
gi|13 : TAAAGGTCAAGTATGGT-GATTTTCCTCA-GACTT--GAGT--------ATCTATACATAAAAATGTCTATCATGCAGTCATTTATGA--TTAA-TTC-CATGG-C-TG-TTTTGTTGAACATCACTAGGCATGATT
gi|10 : AAAGATCAAGTTTGGT-GATTTTCCTCA-AATTT--TAATT-AAA--AAACTGTATGT--AG--------------GTCACCAA-GG-TTTAA-TTC-CATGGCCGTTAT---GCCAAAAATCACTCGATGTGATTTA-C-----AGGGTGCTATCAA-ACTTTTTATGTGTGTAC-CTCAACGAT---CA-----ATAA--TTGTTTTGTgcactgcactctcaaattttta
gi|18 : AAAATTCAAGTACGGT-GATTTTCGTAA-AACCT--TTATA-CAT--AAA---TATGT----CTGT--------CAGTCGCATA-TGATTTAATTTC-CATGG
gi|16 : tcGTATGGT-GATTTTCCTCA-AACTTCAGAGTT-TAA--AAActgttttat
gi|21 : aaATGGT-GATTTTCCTCA-AACTTCAGAGCTAAAA--AAACTGAATGT--aaaaaggaatgtttatttcaatagccgttttgcaaaaaatcacttggtgtgatttacag
gi|14 : CAGTCAGATA-TGATTAAA-TTTTCATGG-C-TG-TTTTGCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAA-CGTTT---------TAC-
gi|16 : aaaggtcaagtaaggtgatataagatgtctatTTTAT-TTC-AATAGCCGT---TTTGCAAAAAATCACTTGGTGTGATTTA-C-----AG
gi|20 : aagtatggtgattttcctcaaacttcagagtttaaaaaaaaaaggaatgTTTTGTAAAAAATCACTTGGTGTGATTTA-C-----AGGGTGCTATCAA-ACTTT---------
Alignments
lowQualScore : 222222222222222222222222222222222222222222222
lowQualScore : 4444444444444 22222222222 1111 444444444444444444444 1111 333333333333333333333333333333333333333333333 111111 1 1111 2222222222222222 666666666666666 222 111111 222222222 1 7777777777 33
lowQualScore : 2222222222222 4 4 1 4 3 7 44 2 33 66 4 11111111111 3333 66 66 4 555555555555555555555 3333 4 222222222222222222222222222222222222222222222 777777 9 0 0000 4 3 3 99 3333333333333333 55 4 333333333333333 7 4 777 4 4 000 1 2 2 444444 1 5 222222222 0 3 9999999999 00
lowQualScore : ............. . . . . . . .. . .. .. . ........... .... .. .. . ..................... .... . ............................................. ...... . . .... . . . .. ................ .. . ............... . . ... . . ... . . . ...... . . ......... . . .......... ..
lowQualScore : 4444444444444 0 0 8 7 6 3 77 3 00 11 4 11111111111 2222 11 11 4 333333333333333333333 9999 4 111111111111111111111111111111111111111111111 333333 0 7 7777 0 3 3 22 0000000000000000 00 1 666666666666666 4 8 000 0 0 555 9 4 4 444444 0 7 999999999 0 7 7777777777 77
consensus : TTGTTACTGAAT-ATNAG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACCGATTTTGTA-AAA-GAAATTTAATAACTANCGTAAAAGTTG--CTGC-A-----------GTACTA---A--TG--A-TTGTGTGTN--AAG-TG-AAA--------CTACC----AAGTTGC-AAACACTTTGAA-AATTAC--TT-T-AACT---A---------AAA-TACCAT---TGTAAACAAGTAT--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T--A---AA--AAACTGTATGTAACTGT-------CGGTCACTTANGA---TTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATT--CG-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAAT-ATNAGTA--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACCGATTTTGTA-AAA-GAAATTTAATAACTACCGTAAAAGTTG--CTGC-A-----------GTACTA---A--TG--A-TTGTGTGTG--AAG-TG-AA---------CTACC----AAGTTGC-AAACACTTTGAA-AATTAC--TTGTAAACT---AAACACT--TAAA-TACCAT---TGTAAACAAGTAT--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T--A---AA--AAACTGTATGTAACTGTC------CGGTCACTTAGGA---TTTAA-TTC-CATGGCCGT--TTTTGCCGAAAATCACTTGGCGTGATT------TACAGGGTGCTATCAANC-TTT---------TAC-CTCAACGATTCCCGATTTTATAAATTTGTTTTGT
gi|1 : TTGTTTCTGAATTATTAGTATTACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGTA-AAA-GAAATTTAATAACTAACGTAAAAGTTG--CAGC-A-----------GTACTA---A--TG--A-TTGTGTGTGTTAAT-TA-AAACTTGT---CTACC----AAGTTGC-AAACACTTTAAA-AATTACGATTATAAACTA--AAACACTGACAAAGTACCATAACTGTAAACAAGTATTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGT-GATTTTCCTCA-AACTT--GAGT---------T--C---AA--AAACTGTATGTGACTGTTGCCATGCAGTCACTTAGAA---TTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : AAAGATCAAGTTTGGT-GATTTTCCTCA-AATTT--TAAT---------T--A---AA--AAACTGTATGTA-------------GGTCACCAAGG----TTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGAT---CA-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGT-GATTTTCCTCG-AACTC--GAAT---------TA-A---AA--AAACTGTATATCGAT-TC------CG--------------TTTA-------ATGGCCG---TTTTGTCAAAAATCACTT-GTGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAAT--TCA--A--AACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGTA-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGT-GATTTTCCTCA-GACTT--GAGTATCTATACAT--A---AA--AA--TGTCTATCA-TG--------CAGTCATTTATGA----TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTATC-------AGTCAGATATGA---TTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTAT--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGT-TATTGTCCTCA-AACTT--GGGT---------T--A---AA--A
gi|16 : AAGTATGGT-GATTTTCCTCA-AACTTCAGAGT---------TTAA---AA--AAA--------AA--------------------AGGAATGTTTAT-TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAAG---TAG-A--AACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGTA-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGT-GATTTTCGTAA-AACCT-----T---------T--ATACAT--AAA---TATGT--CTGT-------CAGTCGCATATGA---TTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C----AAGTTGC-AAACACTTTGA--------------------------------AAA-TACCAT---TGCAAACAATCAT--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : GAATGCAAAACCAACATTGTG-AAA-CAAATTAAATATTCAGAATAAAAGAGGAATTCC-A------------CACTG---A--T-----TTG---GTG--AAA-TG-AAATTTAGTAACTACCGTAAAAGTTGCTACAGACTTCTAATGATTGT--GTGTCAAGTTGCAAACACT--T--------------GGAAA-AAGTAC--A--GTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGT-GATTTTGCTCA-AACTT--GAAT---------T--A---AA--AAACTGTATGTAGCTA---------GGTCAC-TAAGA---TGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgtttgttgct--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGT-GATTTTCCTCA-AACTTCAGAGC---------TA-A---AA--AAACTGAATGT
gi|3 : TTGTTACTGAAT-ATAAG-A--AA-TAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGG-ATTGCACACTGATTTTGTACAAACGAAATT--ATTACTACTGTACGAGTTG--CAGCAA-----------GTGCTA---AAGTG--GCTTGTGTCTC--AAG-GA-AA---------CTACC----AAGTTGC-AAACACCTTGAA-AAT-----------ACT---A-----------------AT---TGT-AAC---TGT--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACT---------T-------G--AAGTTTTA-ATAACTGTC------AGGTCACTTAAGA---TTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAAT-ATGA-----AACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GTC-ACA-GAAAATTCAGAACTACCGTAAA-GTTG--CTGC-A-----------GTACT----A--TG--A-TTGTGTGTC--AAG-TGAAA---------CTACC----AAGTTGC-AAACACTTTGA--------------------------------AAA-TATCAT---TGTAAACAAG--T--ATAGTGG--AAAGGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-AACTT--GAGT---------A--A---AATCAAACTGTTTGT-------------CAGTCACTTAAGA---TTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAAT-AT-AGAA--AG--GGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGTA-GAA-GAAATGTGATATCTAAATTAAAAGTTT--CTGC-AATACAGTAGATGTACTACAAA--TG--A-TTATGTGTC--ACG-TG-AAA--------CTACC----ACATTGC-ACACAATTTGAA--------------------------------AA-TACCAC---TGCAAACAAG--G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAAT-TCC--TA--A-TTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGTA-AAA-TAAATTTGATAACTATCATAAAAGTTG--CTGC-A-----------GTACTA---C--TG--A-TTGTGTGTG--AAG-TGAAA---------TTACC----AAGTTGC-AAACACTTTGAA-A--TAC--TT-----------------------------T---TGTAAACAA-T-T--ATAGTGG-GAATGGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGT-GATTTT-CTCA-AACTT--GAGT---------aac
gi|7 : gacatagtgtGTTACTGAAT---CAGTA--A-TTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTA-AAAAGAAATTTAGTAATTACCGTAAAAGTTG--CTAC-A-----------GTATTT---A--TG--A-TTGTGTGT-------------------------C----AAGTTGC-AAACACTTCGAA-AAT-ACCATTGTAAAC--------------AAG-TACATT---TGTTAATGTGTGTTTACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCAT-ATGA-----AACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG--------------------TACCGTACAAGTTG--CTGC-A-----------GCACCA---A--TG--A-CTGTGTGCAATAAGTTA-AA---------CTACCG---AAGTTGA-AAACACTTtaca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAAT-CTGA-----AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTTA-AAA-GAAATTAAATATCTGAAGTGAAAGTTG--CTGC-A-----------ATACGAC--A--TACTA-TTGTGTATC--AAG-T
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 3333333333 1 22222222222 111111 111 11111 8888888888888888888888888888888888888888888 444444444444444444444444 1111 11111111111111111 5555555555555555 1 111 111111 222222222 1 555555555 11
lowQualScore : 7777777777 3 3 0 6 2 3 0 22 1 55555555555 66 777777 66 4 66 555 4 22222 4 3333333333333333333333333333333333333333333 1 000000000000000000000000 1 0 0000 4 3 3 99 77777777777777777 55 88 0000000000000000 0 1 4 4 555 7 444444 1 1 5 222222222 0 3 7 333333333 88
lowQualScore : .......... . . . . . . . .. . ........... .. ...... .. . .. ... . ..... . ........................................... . ........................ . . .... . . . .. ................. .. .. ................ . . . . ... . ...... . . . ......... . . . ......... ..
lowQualScore : 1111111111 6 6 5 2 2 6 9 11 0 66666666666 11 444444 11 4 11 888 5 55555 4 4444444444444444444444444444444444444444444 1 444444444444444444444444 4 8 7777 0 3 3 22 66666666666666666 00 11 0000000000000000 8 0 0 0 666 3 444444 4 0 7 999999999 0 7 3 777777777 33
consensus : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGTA-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGCA-----------G--TACTA---A--TG--A-T--TGTGTGT--CAAGTGAAA-----CTACC-AAGTTGCAAACACTTTGAAAAT--------------AAAA-----------TACCAT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGTG-ATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAAT-ATNAG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACCGATTTTGTA-AAA-GAAATTTAATAACTANCGTAAAAGTTGCTGCA-----------G--TACTA---A--TG--A-T--TGTGTGT--NAAGTGAAA-----CTACC-AAGTTGCAAACACTTTGAAAATTAC--TT-T-AACTAAAA-----------TACCAT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGTG-ATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
gi|1 : TTGTTTCTGAATTATTAGTATTACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGTA-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGCA-----------G--TACTA---A--TG--A-TTGTGTGTGT--TAATTAAAACTTGTCTACC-AAGTTGCAAACACTTTAAAAATTACGATTATAAACTAAAACACTGACAAAGTACCATAACTGTAAACAAGTA------------------TTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGTG-ATTTTCCTCA-AACTT--GAGT---------T---C---AA--AAA-CTGTATGTGACTGTTGCCATGC-AGTCACTTAGAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : AAAGATCAAGTTTGGTG-ATTTTCCTCA-AATTT--TAAT---------T---A---AA--AAA-CTGTATGTA--------------GGTCAC-CAAGGTTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGA-TC--A-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGTG-ATTTTCCTCG-AACTC--GAAT---------T---A---AA--AAAACTGTATAT------------------------CGATTCCG-TTT-AATGGCCGT--TTT-GTCAAAAATCACTTG-TGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAAT--TCA--A--AACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGTA-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGTG-ATTTTCCTCA-GACTT--GAGTATCTATACAT---A---AA--AA---TGTCTATCA-TG--------C-AGTCATTTATGA-TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTAT-------C-AGTCAGATATGATTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTA------------------T--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGTT-ATTGTCCTCA-AACTT--GGGT---------T---A---AA--A
gi|16 : AAGTATGGTG-ATTTTCCTCA-AACTTCAGAGT---------TTAAA---AA--AAA---------AA-------------GG------AATGTTTAT-TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAAG---TAG-A--AACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGTA-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGTG-ATTTTCGTAA-AACCT-----T---------T---ATACAT--AAA----TATGT--CTGT-------C-AGTCGCATATGATTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C-AAGTTGCAAACACTTTGAAAA------------------------------TACCAT---TGCAAACAATCA------------------T--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : TTGTTGCTGAAT-GCAA-----AACCAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GAGGAATTCCACACTGATTTGGTG-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTACA-----------GACTTCTA---A--TG--A-T--T--GTGT-----GT-------------C-AAGTTGCA------------------------------AA-----------CAC--T---TGGAAA-AAGTA------------------C--A--GTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGTG-ATTTTGCTCA-AACTT--GAAT---------T---A---AA--AAA-CTGTATGTAGCTA----------GGTCAC-TAAGATGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgt--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGTG-ATTTTCCTCA-AACTTCAGAGC---------TA--A---AA--AAA-CTGAATGT
gi|3 : TTGTTACTGAAT-ATAAG-A--AA-TAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGA-TTGCACACTGATTTTGTACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA----------G--TGCTA---AAGTG--GCT--TGTGTCT--CAAG-GAAA-----CTACC-AAGTTGCAAACACCTTGAAAAT-----------ACTAA------------------T---TGTAA-C---TG------------------T--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACT---------T---G---AA--G---TTTTA-ATAACTGT-------CAGGTCACTTAAGATTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAAT-AT--G-A--AACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GTC-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGCA-----------G--TACTA------TG--A-T--TGTGTGT--CAAGTGAAA-----CTACC-AAGTTGCAAACACTTTGAAAAT------------------------------ATCAT---TGTAAACAAGTA------------------T--A--GTGGAAA--GGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-AACTT--GAGT---------A---A---AATCAAA-CTGT------TTGT-------C-AGTCACTTAAGATTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAAT-AT-AG-A--AAG-GGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGTA-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGCAATACAGTAGATG--TACTACAAA--TG--A-T--TATGTGT--CACGTGAAA-----CTACC-ACATTGCACACAATTTG-------------------AAAA-----------TACCAC---TGCAAACAAG--------------------G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAAT-TCCT-----AATTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGTA-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGCA-----------G--TACTA---C--TG--A-T--TGTGTGT--GAAGTGAAA-----TTACC-AAGTTGCAAACACTTTGAAA--TAC--TT-T-----------------------------TGTAAACAA-T-------------------T--ATAGTGGGAAT-GGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGTG-ATTTT-CTCA-AACTT--GAGT---------aac
gi|7 : gacatagtgtGTTACTGAAT---CAG-T--AATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTA-AAAAGAAATTTAGTAATTACCGTAAAAGTTGCTACA-----------G--TATTT---A--TG--A-T--TGTGTGT--------------------C-AAGTTGCAAACACTTCG-------------------AAAA-----------TACCAT---TGTAAACAAGTACATTTGTTAATGTGTGTTT--ACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCAT-AT--G-A--AACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG--------------------TACCGTACAAGTTGCTGCA-----------G--CACCA---A--TG--A-C--TGTGTGCAATAAGTTAAA-----CTACCGAAGTTGAAAACACTTtaca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAAT-CT--G-A--AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTTA-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGCA-----------A--TACGAC--A--TACTA-T--TGTGTAT--CAAGT
Alignments
lowQualScore : 2222222222 22222222222 111111 111 11111 999999999999999999999999999999999 444444444444444444444444 1 1111 22222222222222222 5555555555555555 1 111 111111 222222222 1 555555555 11
lowQualScore : 4444444444 3 3 0 2 444 7 22 0 4 11111111111 66 777777 66 4 444 4 22222 4 333333333333333333333333333333333 1 888 222222222222222222222222 9 0 0000 4 3 3 99 00000000000000000 55 88 0000000000000000 0 1 4 4 555 7 444444 1 1 5 222222222 0 3 7 333333333 88
lowQualScore : .......... . . . . ... . .. . . ........... .. ...... .. . ... . ..... . ................................. . ... ........................ . . .... . . . .. ................. .. .. ................ . . . . ... . ...... . . . ......... . . . ......... ..
lowQualScore : 5555555555 6 6 5 2 000 3 11 1 4 11111111111 11 444444 11 4 111 5 55555 4 222222222222222222222222222222222 4 888 333333333333333333333333 0 7 7777 0 3 3 22 77777777777777777 00 11 0000000000000000 8 0 0 0 666 3 444444 4 0 7 999999999 0 7 3 777777777 33
consensus : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-TTGTGTGT--CAAGTGAAACT-----ACC-AAGTTGCAAACACTT--------------------TGAAA-----A-AAAATACCAT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-TTGTGTGT--CAAGTGAAACT-----ACC-AAGTTGCAAACACTT--------------------TGAAA-----ATAAAATACCAT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
gi|1 : TTGTTTCTGAATTATTAGTATTACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGT-A-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGC-A-----------G--TACTA---A--TG--A-TTGTGTGTGTTAATTAAAACTTGTCTACC-AAGTTGCAAACACTTTAAAAATTACGATTATAAACTAAAACACTGACAAAGTACCATAACTGTAAACAAGTA------------------TTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGT-GATTTTCCTCA-AACTT--GAGT---------T---C---AA--AAA-CTGTATGTGACTGTTGCCATGC-AGTCACTTAGAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : AAAGATCAAGTTTGGT-GATTTTCCTCA-AATTT--TAAT---------T---A---AA--AAA-CTGTATGTA--------------GGTCAC-CAAGGTTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGA-TC--A-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGT-GATTTTCCTCG-AACTC--GAAT---------T---A---AA--AAAACTGTATAT------------------------CGATTCCG-TTT-AATGGCCGT--TTT-GTCAAAAATCACTTG-TGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAAT--T-CA-A--AACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGT-A-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGT-GATTTTCCTCA-GACTT--GAGTATCTATACAT---A---AA--AA---TGTCTATCA-TG--------C-AGTCATTTATGA-TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTAT-------C-AGTCAGATATGATTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTA------------------T--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGT-TATTGTCCTCA-AACTT--GGGT---------T---A---AA--A
gi|16 : AAGTATGGT-GATTTTCCTCA-AACTTCAGAGT---------TTAAA---AA--AAA---------AA-------------GG------AATGTTTAT-TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAA--GT-AG-A--AACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGT-A-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGT-GATTTTCGTAA-AACCT-----T---------T---ATACAT--AAA----TATGT--CTGT-------C-AGTCGCATATGATTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C-AAGTTGCAAACACTT--------------------TG----------AAAATACCAT---TGCAAACAATCA------------------T--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : TTGTTGCTGAAT-GC-A--A--AACCAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GAGGAATTCCACACTGATTTGGT-G-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTAC-A-----------GACTTCTA---A--TG--A-TTGTGTGT--CAAGT-------------------TGCAAACACTT--------------------GGAAA-----A----------------------AGTA------------------C--A--GTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGT-GATTTTGCTCA-AACTT--GAAT---------T---A---AA--AAA-CTGTATGTAGCTA----------GGTCAC-TAAGATGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgt--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGT-GATTTTCCTCA-AACTTCAGAGC---------TA--A---AA--AAA-CTGAATGT
gi|3 : TTGTTACTGAAT-AT-AA-G--AAATAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGA-TTGCACACTGATTTTGT-ACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA-----------G--TGCTA---AAGTG--GCTTGTGTCT--CAAG-GAAACT-----ACC-AAGTTGCAAACACCT--------------------TGAAA-----AT--ACTA--AT---TGT-AAC---TG------------------T--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACT---------T--------G--AAG-TTTTA-ATAACTGT-------CAGGTCACTTAAGATTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAAT-AT--G-A--AACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GT-C-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGC-A-----------G--TACTA------TG--A-TTGTGTGT--CAAGTGAAACT-----ACC-AAGTTGCAAACACTT--------------------TG----------AAAATATCAT---TGTAAACAAG--------------------T--ATAGTGG--AAAGGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-AACTT--GAGT---------A---A---AATCAAA-CTGT------TTGT-------C-AGTCACTTAAGATTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAAT-AT-AG-A--AAG-GGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGT-A-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGC-AATACAGTAGATG--TACTACAAA--TG--A-TTATGTGT--CACGTGAAACT-----ACC-ACATTGCACACAATT--------------------TG----------AAAATACCAC---TGCAAACAAG--------------------G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAAT--T-CC-T--AATTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGC-A-----------G--TACTA---C--TG--A-TTGTGTGT--GAAGTGAAATT-----ACC-AAGTTGCAAACACTT--------------------TG-----------AAATACTTT---TGTAAACAA-T-------------------T--ATAGTGG-GAATGGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGT-GATTTT-CTCA-AACTT--GAGT---------aac
gi|7 : gacatagtgtGTTACTGAAT--C-AG-T--AATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTAA-AAA-GAAATTTAGTAATTACCGTAAAAGTTGCTAC-A-----------G--TATTT---A--TG--A-TTGTGTGT--------------------C-AAGTTGCAAACACTT--------------------CG----------AAAATACCAT---TGTAAACAAGTACATTTGTTAATGTGTGTTT--ACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCAT-AT--G-A--AACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG---------------------TACCGTACAAGTTGCTGC-A-----------G--CACCA---A--TG--A-CTGTGTGCAATAAGTTAAACT-----ACCGAAGTTGAAAACACTT--------------------taca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAAT-CT--G-A--AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTT-A-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGC-A-----------A--TACGAC--A--TACTA-TTGTGTAT--CAAGT
Alignments
lowQualScore : 2222222222 22222222222 111111 222222222222 1111111 111 1111 222222222222 6666 444444444444444444444 1 1111 22222222222222222 5555555555555555 1 111 111111 222222222 1 555555555 11
lowQualScore : 4444444444 3 3 0 2 444 7 22 0 4 11111111111 66 777777 66 4 9999 222222222222 5555555 111 3 3333 222222222222 2222 5 888 999999999999999999999 66 5 0 0000 4 3 3 99 00000000000000000 55 88 0000000000000000 0 1 4 4 555 7 444444 1 1 5 222222222 0 3 7 333333333 88
lowQualScore : .......... . . . . ... . .. . . ........... .. ...... .. . .... ............ ....... ... . .... ............ .... . ... ..................... .. . . .... . . . .. ................. .. .. ................ . . . . ... . ...... . . . ......... . . . ......... ..
lowQualScore : 5555555555 6 6 5 2 000 3 11 1 4 11111111111 11 444444 11 4 4444 888888888888 7777777 999 1 9999 888888888888 6666 0 888 000000000000000000000 11 2 7 7777 0 3 3 22 77777777777777777 00 11 0000000000000000 8 0 0 0 666 3 444444 4 0 7 999999999 0 7 3 777777777 33
consensus : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTG----AAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAAAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
gi|1 : TTGTTTCTGAATTATTAGTATTACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGT-A-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGC-A-----------G--TACTA---A--TG--A-TTGTGTGTGTTAATTAAAACTTGT--CTACCAAGTTGCAAAC-ACTTTAAAAATTACGATTATAAACTAAAACACT----GACAAAGTACC-ATAACTGTAAACAAGTA------------------TTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGT-GATTTTCCTCA-AACTT--GAGT---------T---C---AA--AAA-CTGTATGTGACTGTTGCCATGC-AGTCACTTAGAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : AAAGATCAAGTTTGGT-GATTTTCCTCA-AATTT--TAAT---------T---A---AA--AAA-CTGTATGTA--------------GGTCAC-CAAGGTTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGA-TC--A-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGT-GATTTTCCTCG-AACTC--GAAT---------T---A---AA--AAAACTGTATAT------------------------CGATTCCG-TTT-AATGGCCGT--TTT-GTCAAAAATCACTTG-TGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAAT--T-CA-A--AACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGT-A-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGT-GATTTTCCTCA-GACTT--GAGTATCTATACAT---A---AA--AA---TGTCTATCA-TG--------C-AGTCATTTATGA-TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTAT-------C-AGTCAGATATGATTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTA------------------T--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGT-TATTGTCCTCA-AACTT--GGGT---------T---A---AA--A
gi|16 : AAGTATGGT-GATTTTCCTCA-AACTTCAGAGT---------TTAAA---AA--AAA---------AA-------------GG------AATGTTTAT-TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAA--GT-AG-A--AACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGT-A-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGT-GATTTTCGTAA-AACCT-----T---------T---ATACAT--AAA----TATGT--CTGT-------C-AGTCGCATATGATTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C----AAGTTGC------------AAACACTTTG----AAAATACC-AT---TGCAAACAATCA------------------T--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : TTGTTGCTGAAT-GC-A--A--AACCAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GAGGAATTCCACACTGATTTGGT-G-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTAC-A-----------GACTTCTA---A--TG--A-T----TGTG------------TGT--C----AAGT-------------------TGC------------AAACACTTGGAAAAAG------------------------------------------T--ACAGTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGT-GATTTTGCTCA-AACTT--GAAT---------T---A---AA--AAA-CTGTATGTAGCTA----------GGTCAC-TAAGATGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgt--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGT-GATTTTCCTCA-AACTTCAGAGC---------TA--A---AA--AAA-CTGAATGT
gi|3 : TTGTTACTGAAT-AT-AA-G--AAATAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGA-TTGCACACTGATTTTGT-ACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA-----------G--TGCTA---AAGTG--GCT----TGTG------------TCT--C----AAG--G-AAACTACC----AAGTTGC------------AAACACCTTG----AAAATACTAAT---TGT-AAC---TG------------------T--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACT---------T--------G--AAG-TTTTA-ATAACTGT-------CAGGTCACTTAAGATTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAAT-AT--G-A--AACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GT-C-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGC-A-----------G--TACTA------TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTG----AAAATATC-AT---TGTAAACAAG--------------------T--ATAGTGG--AAAGGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-AACTT--GAGT---------A---A---AATCAAA-CTGT------TTGT-------C-AGTCACTTAAGATTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAAT-AT-AG-A--AAG-GGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGT-A-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGC-AATACAGTAGATG--TACTACAAA--TG--A-T----TATG------------TGT--C----ACGT-G-AAACTACC----ACATTGC------------ACACAATTTG----AAAATACC-AC---TGCAAACAAG--------------------G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAAT--T-CC-T--AATTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGC-A-----------G--TACTA---C--TG--A-T----TGTG------------TGT--G----AAGT-G-AAATTACC----AAGTTGC------------AAACACTTTG-----AAATACT-TT---TGTAAACAA-T-------------------T--ATAGTGG-GAATGGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGT-GATTTT-CTCA-AACTT--GAGT---------aac
gi|7 : gacatagtgtGTTACTGAAT--C-AG-T--AATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTAA-AAA-GAAATTTAGTAATTACCGTAAAAGTTGCTAC-A-----------G--TATTT---A--TG--A-T----TGTG------------TGT---------------------C----AAGTTGC------------AAACACTTCG----AAAATACC-AT---TGTAAACAAGTACATTTGTTAATGTGTGTTT--ACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCAT-AT--G-A--AACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG---------------------TACCGTACAAGTTGCTGC-A-----------G--CACCA---A--TG--A-C----TGTG------------TGCAAT----AAGT-T-AAACTACCG---AAGTTGA------------AAACACTTtaca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAAT-CT--G-A--AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTT-A-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGC-A-----------A--TACGAC--A--TACTA-T----TGTG------------TAT--C----AAGT-
Alignments
lowQualScore : 2222222222 22222222222 111111 222222222222 1111111 111 1111 222222222222 444444444444444444444444 1 1111 22222222222222222 5555555555555555 1 111 111111 222222222 1 555555555 11
lowQualScore : 4444444444 3 3 0 2 444 7 22 0 4 11111111111 66 777777 66 4 9999 222222222222 5555555 111 3 3333 222222222222 5 888 222222222222222222222222 9 0 0000 4 3 3 99 00000000000000000 55 88 0000000000000000 0 1 4 4 555 7 444444 1 1 5 222222222 0 3 7 333333333 88
lowQualScore : .......... . . . . ... . .. . . ........... .. ...... .. . .... ............ ....... ... . .... ............ . ... ........................ . . .... . . . .. ................. .. .. ................ . . . . ... . ...... . . . ......... . . . ......... ..
lowQualScore : 5555555555 6 6 5 2 000 3 11 1 4 11111111111 11 444444 11 4 4444 888888888888 7777777 999 1 9999 888888888888 0 888 333333333333333333333333 0 7 7777 0 3 3 22 77777777777777777 00 11 0000000000000000 8 0 0 0 666 3 444444 4 0 7 999999999 0 7 3 777777777 33
consensus : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
gi|1 : TTGTTTCTGAATTATTAGTATTACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGT-A-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGC-A-----------G--TACTA---A--TG--A-TTGTGTGTGTTAATTAAAACTTGT--CTACCAAGTTGCAAAC-ACTTTAAAAATTACGATTATAAACTAAAACACTGACAAAGTACC-ATAACTGTAAACAAGTA------------------TTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGT-GATTTTCCTCA-AACTT--GAGT---------T---C---AA--AAA-CTGTATGTGACTGTTGCCATGC-AGTCACTTAGAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : AAAGATCAAGTTTGGT-GATTTTCCTCA-AATTT--TAAT---------T---A---AA--AAA-CTGTATGTA--------------GGTCAC-CAAGGTTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGA-TC--A-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGT-GATTTTCCTCG-AACTC--GAAT---------T---A---AA--AAAACTGTATAT------------------------CGATTCCG-TTT-AATGGCCGT--TTT-GTCAAAAATCACTTG-TGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAAT--T-CA-A--AACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGT-A-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGT-GATTTTCCTCA-GACTT--GAGTATCTATACAT---A---AA--AA---TGTCTATCA-TG--------C-AGTCATTTATGA-TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTAT-------C-AGTCAGATATGATTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTA------------------T--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGT-TATTGTCCTCA-AACTT--GGGT---------T---A---AA--A
gi|16 : AAGTATGGT-GATTTTCCTCA-AACTTCAGAGT---------TTAAA---AA--AAA---------AA-------------GG------AATGTTTAT-TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAA--GT-AG-A--AACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGT-A-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGT-GATTTTCGTAA-AACCT-----T---------T---ATACAT--AAA----TATGT--CTGT-------C-AGTCGCATATGATTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGCAAACAATCA------------------T--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : TTGTTGCTGAAT-GC-A--A--AACCAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GAGGAATTCCACACTGATTTGGT-G-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTAC-A-----------GACTTCTA---A--TG--A-T----TGTG------------TGT--C----AAGT-------------------TGC------------AAACACTTGGAAAA------------------AGTA------------------C--A--GTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGT-GATTTTGCTCA-AACTT--GAAT---------T---A---AA--AAA-CTGTATGTAGCTA----------GGTCAC-TAAGATGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgt--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGT-GATTTTCCTCA-AACTTCAGAGC---------TA--A---AA--AAA-CTGAATGT
gi|3 : TTGTTACTGAAT-AT-AA-G--AAATAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGA-TTGCACACTGATTTTGT-ACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA-----------G--TGCTA---AAGTG--GCT----TGTG------------TCT--C----AAG--G-AAACTACC----AAGTTGC------------AAACACCTTGAAAATACTAAT---TGT-AAC---TG------------------T--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACT---------T--------G--AAG-TTTTA-ATAACTGT-------CAGGTCACTTAAGATTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAAT-AT--G-A--AACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GT-C-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGC-A-----------G--TACTA------TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATATC-AT---TGTAAACAAG--------------------T--ATAGTGG--AAAGGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-AACTT--GAGT---------A---A---AATCAAA-CTGT------TTGT-------C-AGTCACTTAAGATTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAAT-AT-AG-A--AAG-GGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGT-A-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGC-AATACAGTAGATG--TACTACAAA--TG--A-T----TATG------------TGT--C----ACGT-G-AAACTACC----ACATTGC------------ACACAATTTGAAAATACC-AC---TGCAAACAAG--------------------G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAAT--T-CC-T--AATTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGC-A-----------G--TACTA---C--TG--A-T----TGTG------------TGT--G----AAGT-G-AAATTACC----AAGTTGC------------AAACACTTTG-AAATACT-TT---TGTAAACAA-T-------------------T--ATAGTGG-GAATGGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGT-GATTTT-CTCA-AACTT--GAGT---------aac
gi|7 : gacatagtgtGTTACTGAAT--C-AG-T--AATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTAA-AAA-GAAATTTAGTAATTACCGTAAAAGTTGCTAC-A-----------G--TATTT---A--TG--A-T----TGTG------------TGT---------------------C----AAGTTGC------------AAACACTTCGAAAATACC-AT---TGTAAACAAGTACATTTGTTAATGTGTGTTT--ACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCAT-AT--G-A--AACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG---------------------TACCGTACAAGTTGCTGC-A-----------G--CACCA---A--TG--A-C----TGTG------------TGCAAT----AAGT-T-AAACTACCG---AAGTTGA------------AAACACTTtaca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAAT-CT--G-A--AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTT-A-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGC-A-----------A--TACGAC--A--TACTA-T----TGTG------------TAT--C----AAGT-
Alignments
lowQualScore : 2222222222 22222222222 111111 222222222222 1111111 111 1111 222222222222 444444444444444444444444 1 1111 22222222222222222 5555555555555555 1 111 111111 222222222 1 555555555 11
lowQualScore : 4444444444 3 3 0 2 444 7 22 0 4 11111111111 66 777777 66 4 9999 222222222222 5555555 111 3 3333 222222222222 5 888 222222222222222222222222 9 0 0000 4 3 3 99 00000000000000000 55 88 0000000000000000 0 1 4 4 555 7 444444 1 1 5 222222222 0 3 7 333333333 88
lowQualScore : .......... . . . . ... . .. . . ........... .. ...... .. . .... ............ ....... ... . .... ............ . ... ........................ . . .... . . . .. ................. .. .. ................ . . . . ... . ...... . . . ......... . . . ......... ..
lowQualScore : 5555555555 6 6 5 2 000 3 11 1 4 11111111111 11 444444 11 4 4444 888888888888 7777777 999 1 9999 888888888888 0 888 333333333333333333333333 0 7 7777 0 3 3 22 77777777777777777 00 11 0000000000000000 8 0 0 0 666 3 444444 4 0 7 999999999 0 7 3 777777777 33
consensus : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
gi|1 : TTGTTTCTGAATTATTAGTATTACCTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGT-A-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGC-A-----------G--TACTA---A--TG--A-TTGTGTGTGTTAATTAAAACTTGT--CTACCAAGTTGCAAAC-ACTTTAAAAATTACGATTATAAACTAAAACACTGACAAAGTACC-ATAACTGTAAACAAGTA------------------TTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGT-GATTTTCCTCA-AACTT--GAGT---------T---C---AA--AAA-CTGTATGTGACTGTTGCCATGC-AGTCACTTAGAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : AAAGATCAAGTTTGGT-GATTTTCCTCA-AATTT--TAAT---------T---A---AA--AAA-CTGTATGTA--------------GGTCAC-CAAGGTTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGA-TC--A-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGT-GATTTTCCTCG-AACTC--GAAT---------T---A---AA--AAAACTGTATAT------------------------CGATTCCG-TTT-AATGGCCGT--TTT-GTCAAAAATCACTTG-TGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAAT--T-CA-A--AACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGT-A-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGT-GATTTTCCTCA-GACTT--GAGTATCTATACAT---A---AA--AA---TGTCTATCA-TG--------C-AGTCATTTATGA-TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTAT-------C-AGTCAGATATGATTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTA------------------T--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGT-TATTGTCCTCA-AACTT--GGGT---------T---A---AA--A
gi|16 : AAGTATGGT-GATTTTCCTCA-AACTTCAGAGT---------TTAAA---AA--AAA---------AA-------------GG------AATGTTTAT-TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAA--GT-AG-A--AACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGT-A-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGT-GATTTTCGTAA-AACCT-----T---------T---ATACAT--AAA----TATGT--CTGT-------C-AGTCGCATATGATTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGCAAACAATCA------------------T--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : TTGTTGCTGAAT-GC-A--A--AACCAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GAGGAATTCCACACTGATTTGGT-G-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTAC-A-----------GACTTCTA---A--TG--A-T----TGTG------------TGT--C----AAGT-------------------TGC------------AAACACTTGGAAAA------------------AGTA------------------C--A--GTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGT-GATTTTGCTCA-AACTT--GAAT---------T---A---AA--AAA-CTGTATGTAGCTA----------GGTCAC-TAAGATGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgt--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGT-GATTTTCCTCA-AACTTCAGAGC---------TA--A---AA--AAA-CTGAATGT
gi|3 : TTGTTACTGAAT-AT-AA-G--AAATAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGA-TTGCACACTGATTTTGT-ACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA-----------G--TGCTA---AAGTG--GCT----TGTG------------TCT--C----AAG--G-AAACTACC----AAGTTGC------------AAACACCTTGAAAATACTAAT---TGT-AAC---TG------------------T--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACT----ACT---------T--------G--AAG-TTTTA-ATAACTGT-------CAGGTCACTTAAGATTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAAT-AT--G-A--AACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GT-C-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGC-A-----------G--TACTA------TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATATC-AT---TGTAAACAAG--------------------T--ATAGTGG--AAAGGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-AACTT--GAGT---------A---A---AATCAAA-CTGT------TTGT-------C-AGTCACTTAAGATTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAAT-AT-AG-A--AAG-GGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGT-A-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGC-AATACAGTAGATG--TACTACAAA--TG--A-T----TATG------------TGT--C----ACGT-G-AAACTACC----ACATTGC------------ACACAATTTGAAAATACC-AC---TGCAAACAAG--------------------G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAAT--T-CC-T--AATTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGC-A-----------G--TACTA---C--TG--A-T----TGTG------------TGT--G----AAGT-G-AAATTACC----AAGTTGC------------AAACACTTTG-AAATACT-TT---TGTAAACAA-T-------------------T--ATAGTGG-GAATGGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGT-GATTTT-CTCA-AACTT--GAGT---------aac
gi|7 : gacatagtgtGTTACTGAAT--C-AG-T--AATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTAA-AAA-GAAATTTAGTAATTACCGTAAAAGTTGCTAC-A-----------G--TATTT---A--TG--A-T----TGTG------------TGT---------------------C----AAGTTGC------------AAACACTTCGAAAATACC-AT---TGTAAACAAGTACATTTGTTAATGTGTGTTT--ACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCAT-AT--G-A--AACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG---------------------TACCGTACAAGTTGCTGC-A-----------G--CACCA---A--TG--A-C----TGTG------------TGCAAT----AAGT-T-AAACTACCG---AAGTTGA------------AAACACTTtaca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAAT-CT--G-A--AGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTT-A-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGC-A-----------A--TACGAC--A--TACTA-T----TGTG------------TAT--C----AAGT-
blockSeqs : GTAGA T C A AC T TA A ATACAGTAGAT AC CAAA CT C . . AAT G T G . A . GTACATTTGTTAATGTGTGTTT T A TCAA A G C CA ATCTATACATA TC AC AACTGTCAG T A T T T T TACATA T A T TTATGTGTG G G T CCTGATTTT AT
blockSeqs : ATAAG . . T AA C TA . . . AAG . . . . C G T . . . . GTAT T G C . . . CA TTAAA . C CATGCA A C . . T T . T G . . . A . CA .
blockSeqs : ATAGA . . G A . TC . . . CA . . . . C G T . . . . TCAT T A C . . . . TATAC . C CTATCA A T . . T T . C A . . .
blockSeqs : TCAA . . T A . TG . . . A . . . . C G T . . . . GTAC T A G . . . . TAA . C CTGTCA T T . . T T . C C . .
blockSeqs : GCAA . . T G . TG . . . C . . . . C T T . . . . TGT C G C . . . . TA . T AGCTAG T A . . T T . T G . .
blockSeqs : ATGA . . T C . TA . . . A . . . . G . . . . . . GT . . A . . . . TA . C TTGTCA . T . . . . . T A . .
blockSeqs : TCCT . . G A . AA . . . A . . . . C . . . . . . GG . . C . . . . TA . . AAG . A . . . . .
blockSeqs : CAGT . . T A . . . . . . . . . . . . . TT . . . . . . . TA . . AG . A . . . .
blockSeqs : ATGA . . T A . . . . . . AA . . . . A . . .
blockSeqs : CTGA . . . . . . . . T .
blockSeqs : . . .
blockSeqCons : NCGA****** **** ************ C****** G** **** ************ *** GTAT******************** CTNTCA********** T**
originalCons : TTGTTACTGAAT-AT-AG-A--AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTAACTGT-------C-GGTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
finalCons : TTGTTACTGAATNCGA------AACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGTC------AAGTG--AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTAT--------------------ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-AACTT--GAGT---------T---A---AA--AAA-CTGTATGTCTNTCA----------GTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Alignments
lowQualScore : 22222222222 111111 222222222222 1111111 111 1111 222222222222 444444444444444444444444 1 1111 22222222222222 111 3333333333333333 1 222 111111 222222222 1 555555555 11
lowQualScore : 9999 3 3 0 2 444 7 22 0 4 11111111111 66 777777 66 4 9999 222222222222 5555555 111 3 3333 222222222222 5 888 222222222222222222222222 9 0 0000 4 3 3 555 99 44 11111111111111 111 0 3 0000000000000000 0 3 4 4 000 1 444444 1 1 5 222222222 0 3 7 333333333 88
lowQualScore : .... . . . . ... . .. . . ........... .. ...... .. . .... ............ ....... ... . .... ............ . ... ........................ . . .... . . . ... .. .. .............. ... . . ................ . . . . ... . ...... . . . ......... . . . ......... ..
lowQualScore : 5555 6 6 5 2 000 3 11 1 4 11111111111 11 444444 11 4 4444 888888888888 7777777 999 1 9999 888888888888 0 888 333333333333333333333333 0 7 7777 0 3 3 888 22 66 77777777777777 444 7 5 7777777777777777 8 8 0 0 555 9 444444 4 0 7 999999999 0 7 3 777777777 33
consensus : TTGTTACTGAATNC--GAAACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-A---ACTT--GAG--T---------T----AAA---AAACTGTATGT--CTGT-------CA-GTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
Reference ( family-1181 ) : TTGTTACTGAATNC--GAAACTAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-GAAATTTAATAACTACCGTAAAAGTTGCTGC-A-----------G--TACTA---A--TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGTAAACAAGTA------------------T--ATAGTGGAAAAAGGATTCC---AAGTAATTACTGATATTTTTGAAAATT-TAAAGATCAAGTATGGT-GATTTTCCTCA-A---ACTT--GAG--T---------T----AAA---AAACTGTATGT--CTNT-------CA-GTCACTTANGATTTAA-TTC-CATGGCCGT--TTTTGCCAAAAATCACTTGGTGTGATT------TACAGGGCGCTATCAANC-TTT---------TAC-CTCAACGATTC--G-----ATAA--TTGTTTTGT
gi|1 : CTAACATTGTGAAA-CAAATCAAATATTTTGAATAAAA-GAGGAATTCCATACTGATTTTGT-A-AAA-GAAATTTAATAACTAACGTAAAAGTTGCAGC-A-----------G--TACTA---A--TG--A-TTGTGTGTGTTAATTAAAACTTGT--CTACCAAGTTGCAAAC-ACTTTAAAAATTACGATTATAAACTAAAACACTGACAAAGTACC-ATAACTGTAAACAAGTA------------------TTAATAGTGGAAAAAGGATTTC---AAGCAGTTACTGATATTTTTGAGAATC-TAAAGATCATGCATAGT-GATTTTCCTCA-A---ACTT--GAG--T---------T----CAA---AAACTGTATGTGACTGTTGCCATGCA-GTCACTTAGAATTTAA-TTC-CATGGACATGATTTTGCCAAAAATCACTTGGTGTGATT------TAAAGGGTGCTATCAACC-TTT---------TAC-CACAACCATT---G-----ATAA--TTGTTTTGT
gi|10 : ttgtttctgaattattagtattacAAAGATCAAGTTTGGT-GATTTTCCTCA-A---ATTT--TAA--T---------T----AAA---AAACTGTATG------T-------AG-GTCAC-CAAGGTTTAA-TTC-CATGGCCG---TTATGCCAAAAATCACTCGATGTGATT------TACAGGGTGCTATCAAAC-TTTTTATGTGTGTAC-CTCAACGA-TC--A-----ATAA--TTGTTTTGT
gi|11 : TCC---AAGTAATTACTGATATTTTTGAAAATT-CAAAGATTAGGTTTGGT-GATTTTCCTCG-A---ACTC--GAA--T---------TA---AAA---AAACTGTATAT--C----------------------GATTCCG-TTT-AATGGCCG---TTTTGTCAAAAATCACTT-GTGTGATT------TACAGGGTGCTATCAAGC-TTT---------
gi|12 : TCGTTACTGAATTC--AAAACTAAAATTGTGAAA-CAAATCAAATATTTAGAATAAGA-GAGGAATTCCATACTGATTTAGT-A-AAA-GAAATTTA
gi|13 : gtaacttacaaggaccatacaatctcagcacagacagcaatgacgtgttgt-TAAAGGTCAAGTATGGT-GATTTTCCTCA-G---ACTT--GAG--TATCTATACAT----AAA---AA--TGTCTAT--CATG-------CA-GTCATTTATGA-TTAA-TTC-CATGGCTG---TTTTGTTGAACATCACTAGGCATGA-T------TGCACTGCACTCTCAAAT-TTT---------TAtt
gi|14 : ATGT--CTAT-------CA-GTCAGATATGATTAAA-TTTTCATGGCTGT--TTT-GCTGAAAATCACTTGGCAAAATTTACATATACACAACGCTCTCAACG-TTT---------TAC-
gi|15 : aaaggtcaagtaaggtgatataagGTAAACAAGTA------------------T--A--GTGGAAAAAGGATTCC---AGGTAATTACTGATATTTTTGAAAATT-AAAAGATCAAGTATAGT-TATTGTCCTCA-A---ACTT--GGG--T---------T----AAA---A
gi|16 : AAGTATGGT-GATTTTCCTCA-A---ACTTCAGAG--T---------TTAAAAAA---AAAAGGAATGT--TTAT---------------------------TTC-AATAGCCGT--TTT-GCAAAAAATCACTTGGTGTGATT------TACAG
gi|17 : TTGTTACTGAAGTA--GAAACTAACATTGTGAAA-GAAATTAAATACTCAGAATAGAA-GTGGAATTCTACACAGATTTTGT-A-AAA-G
gi|18 : ttgtT-CAAAATTCAAGTACGGT-GATTTTCGTAA-A---ACCT-------T---------T----ATACATAAA---TATGT--CTGT-------CA-GTCGCATATGATTTAATTTC-CATGGCTGT--TTTttt
gi|19 : C----AAGTTGC------------AAACACTTTGAAAATACC-AT---TGCAAACAATCA------------------T--A-ATTGG-AAAAGGATTTG---AAGat
gi|2 : TTGTTGCTGAATGC--AAAACCAACATTGTGAAA-CAAATTAAATATTCAGAATAAAA-GAGGAATTCCACACTGATTTGGT-G-AAATGAAATTTAGTAACTACCGTAAAAGTTGCTAC-A-----------GACTTCTA---A--TG--A-T----TGTG------------TGT--C----AAGT-------------------TGC------------AAACACTTGGAAAA------------------AGTA------------------C--A--GTGGGAAAGGGATTCC---AAGTAG--A-TGATATTTTTGAAAATT-TAAAGATTAAGTTTGGT-GATTTTGCTCA-A---ACTT--GAA--T---------T----AAA---AAACTGTATGT--AGCT-------AG-GTCAC-TAAGATGTAA-TTC-CATGGCCA---TTTTGCCAACAATCACTTGGTGTGATT------TACAGGATGCTATCAAGCTTTT---------TACGCTCAATAATTCCTGATTTTATAAATTTGTTTTG
gi|20 : atgtgttgt--TTTTGTAAAAAATCACTTGGTGTGATT------TACAGGGTGCTATCAAAC-TTT---------
gi|21 : ctgATGGT-GATTTTCCTCA-A---ACTTCAGAG--C---------TA---AAA---AAACTGAATGT--
gi|3 : TTGTTACTGAATATAAGAAA-TAATACTGTGAAATCAAATTAACTTTTCAGAATAAAACGTGGA-TTGCACACTGATTTTGT-ACAAACGAAATT--ATTACTACTGTACGAGTTGCAGCAA-----------G--TGCTA---AAGTG--GCT----TGTG------------TCT--C----AAG--G-AAACTACC----AAGTTGC------------AAACACCTTGAAAATACTAAT---TGT-AAC---TG------------------T--ATAATGAAAAAAGG-TTCTCAAAAATAATAACTGATTTGTTTAGAAATTATATAGATTAAGTATGGTGGATTGTCCTCACAACTACTT--GAAGTT---------T----TAA---TAACTG----------T-------CAGGTCACTTAAGATTTAA-TTC-CATGGCGGT--
gi|4 : tcatcacagatgacacatgcttgtTTGTTACTGAATAT--GAAACTGGCATCG-GAAA-CAA-TTAA-TAT-CAGAATAAA--GTGGAATTCCATACTGATTT-GT-C-ACA-GAAAATTCAGAACTACCGTAAA-GTTGCTGC-A-----------G--TACTA------TG--A-T----TGTG------------TGT--C----AAGT-G-AAACTACC----AAGTTGC------------AAACACTTTGAAAATATC-AT---TGTAAACAAG--------------------T--ATAGTGG--AAAGGATTC-----AATAATTACTGATATTTTTGAGAATT-TAAAGA--------------------TCA-A---ACTT--GAG--T---------A----AAATC-AAAC----TGT--TTGT-------CA-GTCACTTAAGATTTAA-TTA-CATGGCCG---TATTGCCAAAAATCACTTGGTGTG
gi|5 : aatgacttgtgtgTTGCTACTGAATAT--AGAAAGGGCATTGTAAAA-CAAATTAGATATTCAGAACAAAA-GTGGAAACCGAAATCGATTTTGT-A-GAA-GAAATGTGATATCTAAATTAAAAGTTTCTGC-AATACAGTAGATG--TACTACAAA--TG--A-T----TATG------------TGT--C----ACGT-G-AAACTACC----ACATTGC------------ACACAATTTGAAAATACC-AC---TGCAAACAAG--------------------G--ATAGTGGAAAAAGGATTCA---AAGTAATTAC--ATATCTTTGAAAATT-TAAAGATCAAGtga
gi|6 : tacttacaccgaccacatggtctcagtacagactacaatgatatgctgtTTGTTACTGAATTC--CTAATTAACATTGTGACA-CAAATTAAATATTCAGAATAAAA-GTGGAATTCCACACTGATTTTGT-A-AAA-TAAATTTGATAACTATCATAAAAGTTGCTGC-A-----------G--TACTA---C--TG--A-T----TGTG------------TGT--G----AAGT-G-AAATTACC----AAGTTGC------------AAACACTTTG-AAATACT-TT---TGTAAACAA-T-------------------T--ATAGTGG-GAATGGATTCC---AAGTAATCACTGATATTTTTGAAAATT-TAAAGATCAAGTATAGT-GATTTT-CTCA-A---ACTT--GAG--T---------aac
gi|7 : gacatagtgtGTTACTGAATCA--GTAATTAACACTGTGAAA-CAAATCAAATATTTCGAATAAAA-GAGGAATTCCACACTGATTTGGTAA-AAA-GAAATTTAGTAATTACCGTAAAAGTTGCTAC-A-----------G--TATTT---A--TG--A-T----TGTG------------TGT---------------------C----AAGTTGC------------AAACACTTCGAAAATACC-AT---TGTAAACAAGTACATTTGTTAATGTGTGTTT--ACAGTGGGAAAAGGATT
gi|8 : acttacaccaaccaattgatctcagtacagacaacaatgatgtgttgtttgttactgaatcaTTGTTGCTGCATAT--GAAACTAACATATTGAAA-CAAATCAAGTATTCAGAATAAAA-GTGGAATTCCATACAAACTGTG---------------------TACCGTACAAGTTGCTGC-A-----------G--CACCA---A--TG--A-C----TGTG------------TGCAAT----AAGT-T-AAACTACCG---AAGTTGA------------AAACACTTtaca
gi|9 : acttacaccgaccatatcatctcaatacagacagcaatgacatgttgtTTGTTACTGAATCT--GAAGCTGGTATTGTTAAA-CAAATTAAATATTCAGAATAAAA-GTTGAATTCTCTATTGAATCTTT-A-AAA-GAAATTAAATATCTGAAGTGAAAGTTGCTGC-A-----------A--TACGAC--A--TACTA-T----TGTG------------TAT--C----AAGT-