lowQualScore                  :                                                            22                                     111111                               222222222222        1    1111111111                         22222222             66666666666                  111       2  1          11                   111                                                                                         11111   11        22222           111               11           2         1111                          1                                                        1111111111111      1   11                                         11                 11              333333333                       22222222                          
lowQualScore                  :                                                            00      3     666     4    4  4  3     000000      3  3     666      3 3  3 222222222222   55   2  4 4444444444    3 999     3       3  22222222  3 3 44     00000000000   3  7777 3      777  3 3  1  2   44     66  44   555  3   4  222    3 4    2 5    3  999   7777    44 3     3   1 3 6   6   3 5  3  3 44 888    777    3 11111   11 3 3 3  66666 44 3      444 555 6  3  3   11        55 6   1     9999   6666   3 7777 88888    6  6   4 4   55     8  6666        4 9999   66   9999  4 8888888888888      5   00    4 55 4 4   4    4   8  4 4   8 4     33 777 4 4      4  11   777  3     777777777 777     7   66      0 77777777    4   55 4     8        
lowQualScore                  :                                                            ..      .     ...     .    .  .  .     ......      .  .     ...      . .  . ............   ..   .  . ..........    . ...     .       .  ........  . . ..     ...........   .  .... .      ...  . .  .  .   ..     ..  ..   ...  .   .  ...    . .    . .    .  ...   ....    .. .     .   . . .   .   . .  .  . .. ...    ...    . .....   .. . . .  ..... .. .      ... ... .  .  .   ..        .. .   .     ....   ....   . .... .....    .  .   . .   ..     .  ....        . ....   ..   ....  . .............      .   ..    . .. . .   .    .   .  . .   . .     .. ... . .      .  ..   ...  .     ......... ...     .   ..      . ........    .   .. .     .        
lowQualScore                  :                                                            55      3     444     0    0  0  6     555555      6  6     444      6 6  6 555555555555   00   6  0 1111111111    3 222     3       3  88888888  3 3 66     55555555555   3  1111 3      555  3 3  2  9   66     22  66   888  3   0  555    2 1    7 4    3  444   4444    66 3     3   0 3 7   7   3 0  3  3 66 111    777    3 77777   44 3 3 3  33333 66 3      666 888 7  3  3   44        55 7   2     8888   3333   3 1111 33333    5  0   0 0   55     0  0000        4 4444   11   4444  4 1111111111111      0   66    4 55 0 0   0    0   0  0 0   0 0     55 000 0 0      0  99   000  6     777777777 000     5   55      7 00000000    0   55 0     0        
consensus                     :                                                      AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAATC-CA-AACAT---AAATAC-A-AA-T-----AC-NAA-CAA--CCAGAA-A---GTACCGTAGTG-T---TGCAA-ACGAAAA-AC-TA--AA-CC-T-T--GACCAG-TTT---GC-GGT-AT----T-TTCTGT--TTC-C-GTCCCGGTT--TTTATT-TT--ACT---AT-TCG-TT---TATTTGCTTCCGGGTTTG-AT-N-TTCG---TTCT--T-GATGG-CCACG-A-TTG-ACA-CGGT-TC-A--C--GATCG-CAGTGT-T-----GAAN-A-T-A-TA-ATA-A--G-TTGCACGA-C---T-TT-TT-GAA-NTTCTTTTTGCATATTTGACACA---ATA-A--CCT-G----A-----TCACTTTTACC-A-TAA--TTTAT-GTAAT-CTTTTTTG-T----AAT--GAT----AA-TA-A-TN-T-C---AGAAAAACGC--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GAT---CG-AAAAA-A------CC---ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
Reference ( gi|4 )            :                                                      AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAATC-CA-AACAT---AAATAC-A-AA-T-----AC-CAG-CAA--CCATAA-A---GTACCGTAGTG-T---TGCAA-ACGAAAA-AC-TG--AT-CC-T-T--GACCA--TTT---ATAGGT-AT----T-TTCTGT--GTC-C-GTACCTGTT--TTTATG-TT--ACT---AT-TCG-TT---TATTTGTTTCCGGGTTTG-AT-T-TTCG---TTCT--T-GATGG-CCACG-A-TTG-ACA-CGGT-TC-A--C--AATCG-CGGTGT-T-----GAAT-A-T-A-TA-ATC-A--G-TTGCACAG-C---T-TT-TT-GAA-TTTTTTTTTGTA-ATTTGACACT---ATA-A--CCT-G----A-----TCACATTCACC-A-TAA--TTTAT-GTAAT-CTTTTTTG-T----AAT--GAT----AA-TA-A-TG-T-C---AGAAAACCGC--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCT-GAT---TG-AAAAA-A------TC---ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
gi|1                          :                                                      AAAATT--CACTCA-CCCTA---CACGT-GTCA-TTTACGTCACC------CAAATC-CA-A-CATTGTAAATAC-A-AA-TTTAATGC-AAA-CAA--CCAGAA-AAAAGTACCGTAGTGGT---TTCAA-ACGAAAAGAC-TA--GT-AC-C-T--GATCAA-TTC---CTGGGT-AT----T-TTCTGT--GTT-CTGTCTCCAGT--TTTATT-TT--ACT---AT-TCGATT---TATTTGTTTCCGGGTTGA-AT-GGTTCG---TTCTGAT-GATGGGCCACG-AATTGCACA-CAGT-TCGA--CGGATTTA-CGA-GTCT-----GAAA-A-T-A-TA-AT--A--G-TTGCACGA-C---T-TT-TT-GAAATTCTGTTTTGCATATTTGACACA---ATA----CCT-G----G-----ACACTTTTACC-A-TAA--TTTAT-GAGATTCTTTTTTG-T----AAT--GAT----AA-TATA-TT-T-C---TGAAAA-TGCTTTTTC-C--C-G-AAC-GGGTGGAG-CA-G-GTAGG-GGGTGCAA---TAC-AACTCT-CCC-GAT---CG-AAAAAGA------CC---ATTCA-CTC--GGTGACAGCGC-----GAGAGGCG--T-AATTCTTAGAGCAC
gi|7                          :   tcaaggatttttaaaaaaattcactcacccacaggggtgagtggcaggtaaAAAATTTTCACTCA-CCCAC---
gi|5                          :                                                 tttttAAAATT--CACTCA-CCCAC---CTCTT-GTCA-TT-AC-TCGCC------CAAA----ATGGCAT---A--TAC-A-AA-T-----GC-AAA-CAA--CCAGAA-A---TTACCGAAGTT-T---TACAA-ACGAAAA-AC-TA--AA-CC-T-T--GACT------------GGT------------------TC-C----CCGGTG--TTT---------------C-TCG-TT-----TCTG-TTCTAGATT--------TTCG---TTTT--T-GATGG-CCATG-A-TTG-AAA-CAGT-CC-A--C--GATCG-CAATGT-T-----TAAA-A-C-T-TA-----A--G-TTGCACGA-C---T-TT-TT-TAA-ACTCTTTCTGCATATTTGACACA---ATA-A--CCT-G----A-----TAACTTTTACC-A-TAA--TTTAT-GCAA-----------C----AAT--AAT----AA-T--A-TT-T-T---AGCAAAACAC--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-ATA-G-GGGTGC-ATGTT-C-AAATCT-CCC-GAT---TG-AAAAA-A------AC---ACTCACATC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCACtggtgagtggcaggtattaattcactcacccaccacttgtcattactcacccaaatccaaacatgaatacaaatacaaacaaccagaaagttgcaaacggaaaactaaaccttgaccagtttgcggtattttctgtttccgtcccggtttttattttactattcgtttattgcttctggatttgatcttcattcttgatggccacgattgacacggttcacgatcgtagtgttaaatatataataagttgcactactttttgaaattctttttgcatatttgacacaataacctgatcacttttaccataatttatgtattct
gi|8                          :      tcaaggattttttaaatttttcactcacccacgggagagtggcaggtaAAAATTT-CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCATTGCACTACATGTA-CA-AACAT---AAATGC-A-AA-T-----AC-CAA-CAA--CCATAA-A---GTACCGTAGTG-T---TGCAA-ACGAAAA-AC-TA--AA-CCATAT--GACCAA-TTC---AC-GGT-AT----T-TTCTGT--TTC-C-ATCCCAGTT--TTTATT-TT--ACT---AT-TCG-TT---TATTTGTTTCTGACTTTG-AT-T-TTCG---TTCT--T-GATGG-CC----A-TTG-ACA-TGGT-TC-A--C--GATCG-CATTGT-T-----GAAA-A-T-A-TA-ACA-A--G-TTGCATGA-C---T-TT-TTGGAA-TTCTTTTT--TC-ATT------T---ATA-A--CCT-G----A-----TCACTTTTA
gi|2                          :        ctaggatttttaaaaattttcactcacccacggataagtggcaggtAAAATT--CACTCAGCCCTA---CACTT-GTCAATT-AC--CACC------CAAATC-CA-AACAT---AAATAC-A-AA-TTC---AC-CAA-CAA--CCAGAAGA---GTA-CATAGTG-TC--TGATA-TCGAAAA-ACTTA--AC-CC-T-TTGGACCG--------ATCGGT-ATTCTAT-TTATGT--TTCGC-GT-CCGGTTTATTTA-G-TTTCACT---AT-CTA-ATCC-TATTGGTGTCCAGGTGTGAAT-T-TTCA---TTCT--A-CATGG--CAGGCA-TTG-ACA-CGGTATC-AATG--GATCA-C-GTGT-T-----GAA--A-T-C-TA-ATTAA--G-TGGCACGA-C---T-TT-TT-G-A-TTTTTTTTT-TA-ATTGAACACA---ATA-C--CTT-G----A-----TCCTTTTTACC-A-TAA--TTTATAGTAAT-CTTTTTTGAT----AAT--GATAATAAA-TA-A-TT-T-C---AGAAAAACGCA-TTTCGC--CAG-AACAGAGT-GAG--A-G-GTA-GCAGGTGA-A---T-CAAACTCT-CCT-GGT---CG-ACAAT-A------TC---ACTCA-CTC-TGGT--C-G--------GAGA-GCA--T-AATGCATAGA
gi|6                          : ctcctagattttgtgaagaattttcttcactccccatgggtgagtgacaggctAAAATTTTCACTCA-CCCA
gi|16                         :                                           ctagattttttAAAATT--CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAATC-CA-AACAT---AAATAC-A-AA-T-----AC-CAA-CAA--CCAGAA-A---GTACCGTAGTG-T---TGCAA-ATGAAAT-AA-TA--AA-CC-T-T--GACCAG-TTT---GC-GGT-AT----T-TTCgctgtgagtagcaggtataattcactcacccaccacttagtcattactcacccaaaccaaacatgaatacaaaatacaaaacaaccagaaagttgcaaacggaaaactagaaaccttgaccagtttgcgtgattttctgtttccgtcccggttttattttactatgtcgtttattgcttctggatttgatcttcattcttgatggccacgatggacacgttcacgatcgtagtgttaaataataatagttgcactactttttgaaattctttttgcatatttgacacaatagacctgatcacttttaccattaatttatgtattc
gi|15                         : ctaggatttttaaaaaatttcactcacccacgggtgagtcagagtggcaggtaAAAAT---CACTCA-CCCACTGGCACTT-GTCA-TT-AC-TCGCC------CAAATC-C----------AAATAC-A-AA--------------CAA--CCAGAA-A---TTACCATAGTG-T---TACAT-ACGAAAA-TC-CA--AA-CC-T-T--GACTG--GTT---GCCGGG-GT----T-TTC-GT---TC-C-G-----GTT--TTTATT-TT--ACT---AT-
gi|12                         :        aggatttttataatttttcgctcacccacgggtgagtggtaggtcaAAAATT--CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAATT-CA-AACAT---AGATAC-A-AA-T-----GC-CAA-CAA--CCA
gi|7                          :                           atttttcactcacccacgggtgagtgacaggtaTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAATC-CA-AACAT---GAATAC-A-AA-T-----AC-AAA-CAA--CCAGAA-A---GT--------------TGCAA-ACGGAAA-AC-TA--AA-CC-T-T--GACCAG-TTT---GC-GGT-AT----T-TTCTGT--TTC-C-GTCCCGGTT--TTTATT-TT--ACT---AT-TCG-TT---TATT-GCTTCTGGATTTG-AT-C-TTCA---TTCT--T-GATGG-CCACG-A-TTG-ACA-CGGT-TC-A--C--GATCG-TAGTGT-T-----AAAT-A-T-A-TA-ATA-A--G-TTGCACTA-C---T-TT-TT-GAA-ATTCTTTTTGCATATTTGACACA---ATA-A--CCT-G----A-----TCACTTTTACC-A-TAA--TTTAT-GTATT-CTgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtttccgtcccggtttttattttactataattcctttattttg
gi|6                          :                tttttaaaattttcactcacccactggtgagtggcaggtattaaTTCACTCA-CCCAC---CACTTAGTCA-TT-AC-TCACC------CAAA-C-CA-AACAT---GAATAC-A-AAAT-----AC-AAAACAA--CCAGAA-A---GT--------------TGCAA-ACGGAAA-AC-TAGAAA-CC-T-T--GACCA--GTT----TGCGTGAT----T-TTCTGT--TTC-C-GT-CCCGGT--TTTATT-TT--ACT---ATGTCG-TT---TATT-GCTTCTGGATTTG-AT-C-TTCA---TTCT--T-GATGG-CCACG-A-TGG-ACA-C-GT-TC-A--C--GATCG-TAGTGT-T-----AAAT-A---A-TA-AT--A--G-TTGCACTA-C---T-TT-TT-GAA-ATTCTTTTTGCATATTTGACACA---ATAGA--CCT-G----A-----TCACTTTTACC-ATTAA--TTTAT-GTATT-C
gi|9                          :           ctagattttttaaaattttcactcacccagctgtgagtagcaggtataaTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAATC-C--AACAT----GATACAA-AA-T-----ACAAAA-CAA--CCAGAA-A-------------G-T---TGCAA-ACGGAAA-ATACA--A---C-T-T--GACCAG-TTT-------GC-GT----TAATCTGT--TTC-C-GTCCCGGTT--TTTATT-TT--ACT---AT-TCG-TT---TA-TTGCTTCT-GATTTG-AT-C-TTC----TTCT--T-GATGG-CCACG-A-TTGAACA-C-GT-TC-A--C--GATCG--AGT-T-T-----AAATAA-T-A-TA-----A--G--TATACA--C---TATT-TT-GAA---ATCTTTTGCATATTTGACACA---ATA-G--ACT-G----A-----TCACTTTTACC-A-TTA--ATTA---------TTTTCTG-T----A
gi|3                          :                                                                             gagttggcaggtataa-TCACC------CAAATCGCA-AACAT---AAATAC-ACAA-TTC---AC-C-G-CAAAACCAGAA-A---ATACC--AGTG-TGTTTGCATTATGAAAA--C-TA--AA-CT-------ACCAGGTTTCGCGTATTC-AT----T-TTCTGTTTGTC---GT-CCCGTT--TTTATTCTT--TCT---AA-TCA-TCCTATATTTTGTTCCAG-TTTG-ATGT-TTCCATTTTCT--TTAATGG-CCAGG-A-TTG-ACA-CGGT--C-A--T--GGAC--CAGTGT-TA----GAAA-A-T-AATATATA-A--G-TTGCACGGAC---TGTT-TT-GAA-TTGTTTTTTTTA--TTTGACATCGAAATA-A--CCTTG----A-----CCCTATTTACCCA-TAA--TT-AT-GTA-T-CTTTGTTG-TGTCGAAT--GAT----AAATA-AATA-T-CTTCAGAAAAACGC--TTTC-C--C-G-AAC-AGGT-GAG-CAGG-GTAGG-GGGTG--A---T-C-AACTCT-CCC-GATGTCTC-GAAAA-T------TC---ACT-ACCTCTTGGTGACGGCA------GAGA-GCAATC-AATTC-TAGAGCAC
gi|22                         :                                                                                                                                                                           AGTG-T---TGCAT-ATGAAAA-AC-TA--AA-CC-T-T--GACAA--GTT---CGCGGT-AT----T-TTCTGT--TTC-C-GTCCCGGTT--TTTATT-TT--ACT---AT-t
gi|17                         :                                                                                                                                                                               -T---TGCAA-ACGAAAC-AC-T---ATACC-T-T--GACCAG-TTT---GC-GGT-AT----T-TTCTGT--TTC-T-GTCCCGGTT--TTTATT-TT--ACT---AT-TCG-TT---TATTTGTTTCCAGGTTTG-AT-T-TTCG---TTCT--T-GATGG-GCACA-A-TTA-ACA-CAGT-TC-A--C--GATCG-CAGTGT-T-----GAAA-A-T-A-TA-ATA-A--G-TTGCA
gi|12                         :                                                                                                                                                                                                                                                  CTGT--TTC-C-GTCCCGGTT--TTTATT-TT--ACTATAAT-TCC-TT---TATTTtg
gi|11                         :                                                                                                                               atttttcactcacccacgggtgagtgacaggtaaaaattcactcacccaccacttgtcattactcacccaaattcaaacatagatacaaatgccaacaaccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTG-AT-G-TTTG---TCCT--T-G-T---CCGTG-A-TTG-ACA-CAGG-TC-A--C--AATCC-CAATAT-TTTTAAAAAT-A-TGA-TA-GTT-A--AATTACACAA-C---T-TT-TT-GAA-ATTCTTTTTGCATATTTGACACA---ACA-A--CCT-G----A-----TCA---TTAGC-A-TTA--TTTAT-AT-AT-C-------------AAT--AAT----------A-TT-T-C---AGAAAAACTC--TTTA-CGGC-G-AAT-GGGT-GAG-CA-G-GTA-G-TGGTG--A---T-C-AACTCT-CC--GAT---TG-AAAAA-AAACC--CC---ACTCACCTC-GGATGACGG--------GAGA-GCG--T-AATTC-TAGAGCACtg
gi|10                         :                                                                                                                                                                                                                                                                                                                     TTG-AT-G-T-CA---TATT--T-AATGG-CCAGG-AGTTG-ACAGCGGT-TC-A--T--GATCGACAGTGT-T-----GAAT-AAT-A-TACATG-AAGG-TTGCGCAG-CGACT-TTGTT-GAA-TTTTTTGTT--A-ATT-GACACA---AGA-AGACC--G----AGAGCGTCAC-TTTACC-A--AA--TTGATCGTAAT-CTTTTTTG-T----GATATGAG----AG-TG-A-TA-TGC---AGAAAACGAC--TTTC-C--G-GTAAC-AGGT-GAGGCA-GTGTA-G-GGG----A---T-C-CACTCT-CCC-G-T---CG-AAAAATA------TC---ACTCACCTC-TGGTGACTG--------GAGA-GCA--TAAATTC-T-GAGCGCt
gi|20                         :                                                                                                                                                                                                                                                                                                                     TTG-AT-T-TTCG---TTCT--T-GATGG-CCACG-A-TTG-GCA-CAGT-TC-A--C--GATCG-CAGTGT-T-----GAAA-A-T-A-T---TA-A--G----------------TT-TT-GAA-ATTCTTTTTGCAGATTTGACACA---ACA-A--CCA-G----A-----TCACtg
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                              CACAT-C---T-TG-TT-GAA-ATTCTTTTTGCATATTTGACATA---ATA-A--CCT-GTCATA-----TCACTTTTACC-A-TAAAATTTAT-GTTAT-CTTTTTTG-T----AAT--GAT----AA-TA---TT-T-A---AAAAAAACGC--TTTC-C--C-G-AAC-GGGT------------A-G-GGGTG--A---T-C-AACTCT-CCC-GAT---TGAAAAAA-A------AC---ACTCACCTC-GGGTGACGGGAGACTCCGAGA-GTG--T-AATTC-TAGAGCAC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AT-CTTGTTTG-T----AAT--GAT----AA-TA-G-TATT-C---AGAAAAAGGC---TTC-C--C-G-AAC--GGT-GAGACA-G-GTA-G-GGGTG--A---T-C-AACTCTCCCC-GAT---CG-AAAAA-AAAAAACCC---ACTCA-CTC-GGGTGATGG--------GAGA-GTG--T-AATTC-TAGAGCACtg
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AT--GAT----AA-TA-G-TA-TTC---AGAAAAACGC--TT-C-C--C-G-AAC-GG-T-GAG-CA-G-GTA-G-GG-TG--A---T-C-AACTCT-CCCCGAT---CG-AAAAA-AAAAAACCC---ACTCAC-TC-GGGTGATGG--------GAGA-GTG--T-AATTC-TAAGGCACt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                --C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACACT-CCC-GGT---CG-AAAAt
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -AAAAA-C------TCCCAACTCAAATC-GGGTGACAG--------GAGA-GCA--T-AATTC-TAGAGCA

Unaligned ( gi|14 ): AGTGCTCTAGGATTTTTAAAAAAAATTCAGTCACCCACGGGTGAGTGGCAGGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGACCAGTTCACAGTATTTTGTTTCCGTCCCGGTTCTTAT
Unaligned ( gi|21 ): ATTTTTTAATAAATTTCACTCGCCAACAGATGAGTGGAAGGTAAAAATTCACTCACCCTAGTCCAAACATAAATACAAAC

lowQualScore                  :                                                                                                                                                                     11                                                                          11111                                                                                                                                                     111                                                                                                                                                                                                                                                           1111111                                                            11                                  222222222                        22222222                          
lowQualScore                  :                                                                                                                                                                     22      2     555     3    3  3  3     888888    3  3       555      3 3  3 77777  44 3 3         3 6666 4444444   3 3 3    3       3    44 3   2 2 555        33 0 2 2    888888888      2  2 2    2      33    2  3     555  3   3  111  2   5   33 4    3  44  44      999      3   0 3 6   6   3 3  3  3 44  3  555  33      888   4 3  3 99 3  6666 44  3     88888   3  3     1 3   3                 555    3 44   3 6666 77777     3      3 3 55       7  666         4 8888   55   8888  4 1111111 55 8          4 99    4 55 3 3   3    3   7  3 3   7 3     22 666 3 3      3   3  7777   3     999999999 7777     5   55        44444444    3   55 3     7        
lowQualScore                  :                                                                                                                                                                     ..      .     ...     .    .  .  .     ......    .  .       ...      . .  . .....  .. . .         . .... .......   . . .    .       .    .. .   . . ...        .. . . .    .........      .  . .    .      ..    .  .     ...  .   .  ...  .   .   .. .    .  ..  ..      ...      .   . . .   .   . .  .  . ..  .  ...  ..      ...   . .  . .. .  .... ..  .     .....   .  .     . .   .                 ...    . ..   . .... .....     .      . . ..       .  ...         . ....   ..   ....  . ....... .. .          . ..    . .. . .   .    .   .  . .   . .     .. ... . .      .   .  ....   .     ......... ....     .   ..        ........    .   .. .     .        
lowQualScore                  :                                                                                                                                                                     88      7     000     6    3  3  1     888888    1  1       444      1 1  1 55555  33 3 3         6 9999 6666666   1 1 1    1       1    22 1   9 9 000        99 6 9 9    333333333      9  9 9    9      99    9  1     444  1   6  444  1   5   77 8    1  11  22      666      1   2 1 2   2   1 8  1  1 22  1  444  22      555   0 1  1 66 1  5555 22  1     44444   1  1     0 1   1                 444    1 22   1 5555 77777     3      6 6 00       3  111         0 5555   55   5555  0 2222222 00 0          0 55    0 00 6 6   6    6   3  6 6   3 6     33 444 6 6      6   6  7777   6     666666666 7777     9   00        55555555    6   00 6     3        
consensus                     :                                                                                                                                                               AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-NA-A-CAACCAGAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTA--A-ACC-T-T---GACCAGTT--CGC-G-GTAT----T----TTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCCGGGTTTG-ATN-TT--CGTTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CG-AT---CG-CAGTGTT---GAAAA-TA-TA-A-TA----A--GT-TGCAC---G-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATA-A--CCT-G----A-----TCACT-TTTACC-A-T--AATTTAT-GTAA-TCTTTTTTG-T----AAT--GAT----AA-TA-A----T-TT-CAGAAAAACG-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GA----TCG-AAAAA-A------CC----ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
Reference ( family-11054 )    :                                                                                                                                                               AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-NA-A-CAACCAGAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTA--A-ACC-T-T---GACCAGTT--TGC-G-GTAT----T----TTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGCTTCCGGGTTTG-ATN-TT--CGTTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CG-AT---CG-CAGTGTT---GAANA-TA-TA-A-TA----A--GT-TGCAC---G-ACT-TT-TTGAANT-TCT-TTTTGCATATTTGACAC---AATA-A--CCT-G----A-----TCACT-TTTACC-A-T--AATTTAT-GTAA-TCTTTTTTG-T----AAT--GAT----AA-TA-A----T-NT-CAGAAAAACG-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GA----TCG-AAAAA-A------CC----ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
gi|1                          :                                                                                                                                                               AAAATT--CACTCA-CCCTA---CACGT-GTCA-TTTACGTCACC------CAAA-TC-CAA-CATTGTAAATAC-A-AA-TTTAATGC-AA-A-CAACCAGAA-AAAAGTACC-GTAGTGGT-T-TCAA-ACGAAAAGACTA--GTACC-T-----GATCAATTCCTG--G-GTAT----T----TTCTGTGTT-C-TGTCTCCAGTT--TT-A-TT-TTACT---AT-TCGATT---TATTTGTTTCCGGGTTGA-ATGGTT--CGTTCTGA-TGATGGGCCACG-AATTGCACA-CAGT-TCGA--CGGATTTACG--AGT-CT---GAAAA-TA-TA-A-TA-------GT-TGCAC---G-ACT-TT-TTGAAAT-TCTGTTTTGCATATTTGACAC---AAT--A--CCT-G----G-----ACACT-TTTACC-A-T--AATTTAT-GAGATTCTTTTTTG-T----AAT--GAT----AA-TATA----T-TT-CTG-AAAATG-CTTTTTC-C--C-G-AAC-GGGTGGAG-CA-G-GTAGG-GGGTGCAA---TAC-AACTCT-CCC-GA----TCG-AAAAAGA------CC----ATTCA-CTC--GGTGACAGCGC-----GAGAGGCG--T-AATTCTTAGAGCAC
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                          tcaaggatttttaaaaaaattcactcacccacaggggtgagtggcaggtaaTTG-ATG-T---CATATT---TAATGG-CCAGG-AGTTG-ACAGCGGT-TC-A--TG-AT---CGACAGTGTT---GAATAATA-TACA-TG----AAGGT-TGCGCAGCG-ACT-TTGTTGAATT-T----TTTGT-TAATTGACAC---AAGA-AGACC--G----AGAGCGTCACT-TT-ACC-A----AATTGATCGTAA-TCTTTTTTG-T----GATATGAG----AG-TG-A----T-ATGCAGAAAA-CGAC--TTTC-C--G-GTAAC-AGGT-GAGGCA-GTGTA-G-GGG----A---T-C-CACTCT-CCC-G-----TCG-AAAAATA------TC----ACTCACCTC-TGGTGACTG--------GAGA-GCA--TAAATTC-T-GAGCGC
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                            TTTG-ATG-TT--TGTCCT---TG-T---CCGTG-A-TTG-ACA-CAGG-TC-A--CA-AT---CC-CAATATTTTTAAAAA-TA-TG-A-TAGTTAA--AT-TACAC---A-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AACA-A--CCT-G----A-----TCA----TTAGC-A-T--TATTTAT-AT-A-TC-------------AAT--AAT----------A----T-TT-CAGAAAAACT-C--TTTA-CGGC-G-AAT-GGGT-GAG-CA-G-GTA-G-TGGTG--A---T-C-AACTCT--CC-GA----TTG-AAAAA-AAACC--CC----ACTCACCTC-GGATGACGG--------GAGA-GCG--T-AATTC-TAGAGCACtg
gi|12                         :                                                                                                                                                               AAAATT--CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TT-CAAACAT---AGATAC-A-AA-T-----GC-CA-A-CAACCAGAt
gi|12                         :                                                                                                                                                                                                                                                                                                                          atttttcactcacccacgggtgagtgacaggtaCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACTATAAT-TCC-TT---TATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtttccgtcccggtttttattttactataattcctttattttg
gi|13                         :                                                                                                                                                                                                                                                                                                                                                atttttcactcacccacgggtgagtgacaggtaaaaattcactcacccaccacttgtcattactcacccaaattcaaacatagatacaaatgccaacaaccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAC---A-TCT-TG-TTGAAAT-TCT-TTTTGCATATTTGACAT---AATA-A--CCT-GTCATA-----TCACT-TTTACC-A-TAAAATTTAT-GTTA-TCTTTTTTG-T----AAT--GAT----AA-T--A----T-TT-AAAAAAAACG-C--TTTC-C--C-G-AAC-G-----------G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GA----TTGAAAAAA-A------AC----ACTCACCTC-GGGTGACGGGAGACTCCGAGA-GTG--T-AATTC-TAGAGCACtg
gi|14                         :                                                                                                                                                                                                                                                                                                                    C-T-T---GACCAGTT--CAC-A-GTAT----T----TT--GT-TT-C-CGTC-CCGGTT--CTTA-Ttg
gi|15                         : agtgctctaggatttttaaaaaaaattcagtcacccacgggtgagtggcaggtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT---CACTCA-CCCACTGGCACTT-GTCA-TT-AC-TCGCC------CAAA-TC----------------C-A-AA-T-----AC-AA-A-CAACCAGAA-A---TTACC-ATAGTG-T-T-ACAT-ACGAAAA-TCCA--A-ACC-T-T---GACTGGTT--GCC-G-G---------------GGT-TT-T-CGTT-CCGGTT--TTTA-TT-TTACT---AT-
gi|16                         :                                                                                                                 aggatttttataatttttcgctcacccacgggtgagtggtaggtcaAAAAATTTCACTCA-CCCAC---
gi|16                         :                                                                                                                                                   ctaggatttttaAAAATT--CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-CA-A-CAACCAGAA-A---GTACC-GTAGTG-T-T-GCAA-ATGAAAT-AATA--A-ACC-T-T---GACCAGTT--TGC-G-GTAT----T----TTCgggtgagtcagagtggcaggtaaaaattcactcacccaccacttgtcattactcacccaaatccaaacataaatacaaataccaacaaccagaaagtaccgtagtgttgcaaatgaaataataaaccttgaccagtttgcggtattttc
gi|17                         :                                                                                                                                                                                                                                   ctaggatttttaaaaaatttcactcacccacgggtgagtcagagtggcaggta-T-T-GCAA-ACGAAAC-ACTA--T-ACC-T-T---GACCAGTT--TGC-G-GTAT----T----TTCTGT-TT-C-TGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCCAGGTTTG-ATT-TT--CGTTCT---TGATGG-GCACA-A-TTA-ACA-CAGT-TC-A--CG-AT---CG-CAGTGTT---GAAAA-TA-TA-A-TA----A--GT-TGCAT---G-
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        A-TCTTGTTTG-T----AAT--GAT----AA-TA-G----TATT-CAGAAAAAGG-C---TTC-C--C-G-AAC--GGT-GAGACA-G-GTA-G-GGGTG--A---T-C-AACTCTCCCC-GA----TCG-AAAAA-AAAAAACCC----ACTCA-CTC-GGGTGATGG--------GAGA-GTG--T-AATTC-TAGAGCAC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AT--GAT----AA-TA-G----T-ATTCAGAAAAACG-C--TT-C-C--C-G-AAC-GG-T-GAG-CA-G-GTA-G-GG-TG--A---T-C-AACTCT-CCCCGA----TCG-AAAAA-AAAAAACCC----ACTCAC-TC-GGGTGATGG--------GAGA-GTG--T-AATTC-TAAGGCACt
gi|2                          :                                                                                                                                                               AAAATT--CACTCAGCCCTA---CACTT-GTCAATT-AC--CACC------CAAA-TC-CAAACAT---AAATAC-A-AA-TTC---AC-CA-A-CAACCAGAAGA---GTA-C-ATAGTG-TCT-GATA-TCGAAAA-ACTT--A-ACC-C-TTTGGACCGAT-----C-G-GTATTCTAT----TTATGT-TT-CGCGT--CCGGTTTATTTAGTT-TCACT---AT-CTA-ATCC-TATTGGTGTCCAGGTGTGAATT-TT--CATTCT---ACATGG--CAGGCA-TTG-ACA-CGGTATC-AATGG-AT---CA-C-GTGTT---GAA-A-TC-TA-ATTA----A--GT-GGCAC---G-ACT-TT-TTGATTT-TTT-TTTTA---ATTGAACAC---AATA-C--CTT-G----A-----TCCTT-TTTACC-A-T--AATTTATAGTAA-TCTTTTTTGAT----AAT--GATAATAAA-TA-A----T-TT-CAGAAAAACG-CA-TTTCGC--CAG-AACAGAGT-GAG--A-G-GTA-GCAGGTGA-A---T-CAAACTCT-CCT-GG----TCG-ACAAT-A------TC----ACTCA-CTC-TGGT--C-G--------GAGA-GCA--T-AATGCATAGAt
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                        ctcctagattttgtgaagaattttcttcactccccatgggtgagtgacaggctTTG-ATT-TT--CGTTCT---TGATGG-CCACG-A-TTG-GCA-CAGT-TC-A--CG-AT---CG-CAGTGTT---GAAAA-TA-T----TA----A--G----------------TT-TTGAAAT-TCT-TTTTGCAGATTTGACAC---AACA-A--CCA-G----A-----TCAC
gi|21                         :                                                                                                                                                                                                -TC-AC-TCACC------CTAG-TC-CAAACAT---AAATAC-A-AA-
gi|22                         :                                                                                                                                                                                                                                    attttttaataaatttcactcgccaacagatgagtggaaggtaaaaatAGTG-T-T-GCAT-ATGAAAA-ACTA--A-ACC-T-T---GACAAGTT--CGC-G-GTAT----T----TTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-c
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAAA-A------CTCCCAACTCAAATC-GGGTGACAG--------GAGA-GCA--T-AATTC-TAGAGCA
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         --C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACACT-CCC-GG----TCG-AAAA
gi|3                          :                                                                                                                                                                                                      -TCACC------CAAA-TCGCAAACAT---AAATAC-ACAA-TTC---AC-CGCA-AAACCAGAA-A---ATACCAGT-GTG-T-TTGCATTATGAAAA--CTA--A-ACT--------ACCAGGT--TTC-GCGTAT----TCATTTTCTGT-TTGT-CGTC-CCG-TT--TTTA-TTCTTTCT---AA-TCA-TCCTATATTTTGTTCCAG-TTTG-ATG-TTTCCATTTTCTTTAATGG-CCAGG-A-TTG-ACA-CGGT--C-A--TG-GA---C--CAGTGTTA--GAAAA-TAATATA-TA----A--GT-TGCAC---GGACTGTT-TTGAATTGTTT-TTTT---TATTTGACATCGAAATA-A--CCTTG----A-----CC-CTATTTACCCA-T--AATT-AT-GTA--TCTTTGTTG-TGTCGAAT--GAT----AAATA-AATATC-TT-CAGAAAAACG-C--TTTC-C--C-G-AAC-AGGT-GAG-CAGG-GTAGG-GGGTG--A---T-C-AACTCT-CCC-GATGTCTCG--AAAA-T------TC----ACT-ACCTCTTGGTGACGGCA------GAGA-GCAATC-AATTC-TAGAGCAC
gi|4                          :                                                                                                                                                               AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-CA-G-CAACCATAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTG--A-TCC-T-T---GACCA-TT--TATAG-GTAT----T----TTCTGT-GT-C-CGTA-CCTGTT--TTTA-TG-TTACT---AT-TCG-TT---TATTTGTTTCCGGGTTTG-ATT-TT--CGTTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CA-AT---CG-CGGTGTT---GAATA-TA-TA-A-TC----A--GT-TGCAC---A-GCT-TT-TTGAATT-TTT-TTTTGTA-ATTTGACAC---TATA-A--CCT-G----A-----TCACA-TTCACC-A-T--AATTTAT-GTAA-TCTTTTTTG-T----AAT--GAT----AA-TA-A----T-GT-CAGAAAACCG-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCT-GA----TTG-AAAAA-A------TC----ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCACt
gi|5                          :                                                                                                                                                               AAAATT--CACTCA-CCCAC---CTCTT-GTCA-TT-AC-TCGCC------CAAAAT----GGCAT---A--TAC-A-AA-T-----GC-AA-A-CAACCAGAA-A---TTACC-GAAGTT-T-T-ACAA-ACGAAAA-ACTA--A-ACC-T-T---GAC-----------------------------TGG-TT-C-C----CCGGTG--TTT--------------C-TCG-TT---T--CTG-TTC-----TAG-ATT-TT--CGTTTT---TGATGG-CCATG-A-TTG-AAA-CAGT-CC-A--CG-AT---CG-CAATGTT---TAAAA-C--T----TA----A--GT-TGCAC---G-ACT-TT-TTTAAAC-TCT-TTCTGCATATTTGACAC---AATA-A--CCT-G----A-----TAACT-TTTACC-A-T--AATTTAT-GCAA-----------C----AAT--AAT----AA-T--A----T-TT-TAGCAAAACA-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-ATA-G-GGGTGC-ATGTT-C-AAATCT-CCC-GA----TTG-AAAAA-A------AC----ACTCACATC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
gi|6                          :                                                                                                               tcaaggattttttaaatttttcactcacccacgggagagtggcaggtaAAAATTTTCACTCA-CCCA
gi|6                          :                                                                                                                                                          ctagattttttTTCACTCA-CCCAC---CACTTAGTCA-TT-AC-TCACC------CAAA--C-CAAACAT---GAATAC-A-AAAT-----AC-AA-AACAACCAGAA-A---GT-------------T-GCAA-ACGGAAA-ACTAGAA-ACC-T-T---GACCAGTT--TGC-G-TGAT----T----TTCTGT-TT-C-CGTC-CCGGTT--TT-A-TT-TTACT---ATGTCG-TT---TA-TTGCTTCTGGATTTG-ATC-TT--CATTCT---TGATGG-CCACG-A-TGG-ACA-C-GT-TC-A--CG-AT---CG-TAGTGTT---AAATA--A-TA-A-T-----A--GT-TGCAC---T-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATAGA--CCT-G----A-----TCACT-TTTACC-ATT--AATTTAT-GTAT-TCgctgtgagtagcaggtataattcactcacccaccacttagtcattactcacccaaaccaaacatgaatacaaaatacaaaacaaccagaaagttgcaaacggaaaactagaaaccttgaccagtttgcgtgattttctgtttccgtcccggttttattttactatgtcgtttattgcttctggatttgatcttcattcttgatggccacgatggacacgttcacgatcgtagtgttaaataataatagttgcactactttttgaaattctttttgcatatttgacacaatagacctgatcacttttaccattaatttatgtattc
gi|7                          :                                                                                                              ctagattttttaaaattttcactcacccagctgtgagtagcaggtataaAAAATTTTCACTCA-CCCAC---
gi|7                          :                                                                                                                                                                tttttTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---GAATAC-A-AA-T-----AC-AA-A-CAACCAGAA-A---GT-------------T-GCAA-ACGGAAA-ACTA--A-ACC-T-T---GACCAGTT--TGC-G-GTAT----T----TTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATT-GCTTCTGGATTTG-ATC-TT--CATTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CG-AT---CG-TAGTGTT---AAATA-TA-TA-A-TA----A--GT-TGCAC---T-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATA-A--CCT-G----A-----TCACT-TTTACC-A-T--AATTTAT-GTAT-TCTtggtgagtggcaggtattaattcactcacccaccacttgtcattactcacccaaatccaaacatgaatacaaatacaaacaaccagaaagttgcaaacggaaaactaaaccttgaccagtttgcggtattttctgtttccgtcccggtttttattttactattcgtttattgcttctggatttgatcttcattcttgatggccacgattgacacggttcacgatcgtagtgttaaatatataataagttgcactactttttgaaattctttttgcatatttgacacaataacctgatcacttttaccataatttatgtattct
gi|8                          :                                                                                                                   tttttaaaattttcactcacccactggtgagtggcaggtattaaAAAATTTTCACTCA-CCCAC---
gi|8                          :                                                                                                                                                   ctaggatttttaAAAATTT-CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCATTGCACTACATG-TA-CAAACAT---AAATGC-A-AA-T-----AC-CA-A-CAACCATAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTA--A-ACCATAT---GACCAATT--CAC-G-GTAT----T----TTCTGT-TT-C-CATC-CCAGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCTGACTTTG-ATT-TT--CGTTCT---TGATGG-CC----A-TTG-ACA-TGGT-TC-A--CG-AT---CG-CATTGTT---GAAAA-TA-TA-A-CA----A--GT-TGCAT---G-ACT-TT-TTGGAAT-TCT-TTTTTCAT-TT----------ATA-A--CCT-G----A-----TCACT-TTTAggataagtggcaggtaaaatttcactcacccaccacttgtcattactcattgcactacatgtacaaacataaatgcaaataccaacaaccataaagtaccgtagtgttgcaaacgaaaaactaaaccatatgaccaattcacggtattttctgtttccatcccagtttttattttactattcgtttatttgtttctgactttgattttcgttcttgatggccattgacatggttcacgatcgcattgttgaaaatataacaagttgcatgactttttggaattcttttttcatttataacctgatcactttta
gi|9                          :                                                                                                                       ctaggatttttaaaaattttcactcacccacggataagtggcaggtTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-C-AACAT----GATACAA-AA-T-----ACAAA-A-CAACCAGAA-A--------------G-T-T-GCAA-ACGGAAA-A-TA--C-AAC-T-T---GACCAGTT--TGC-G-TTA----------ATCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TA-TTGCTTCT-GATTTG-ATC-TT--C-TTCT---TGATGG-CCACG-A-TTGAACA-C-GT-TC-A--CG-AT---CG--AGT-TT---AAATA--A-T--A-TA----A--GTATACAC---T-A---TT-TTGAAAT---C-TTTTGCATATTTGACAC---AATA-G--ACT-G----A-----TCACT-TTTACC-A-T--TAATTA---------TTTTCTG-T----A

lowQualScore                  :                                                                                                                                                                     11                                                                          11111                                                                                                                                                    111                                                                                        1111                                                                                                                                                                111111111                                                         11                                  222222222                        22222222                          
lowQualScore                  :                                                                                                                                                                     22      2     555     3    3  3  3     888888    3  3       555      3 3  3 77777  44 3 3         3 6666 4444444   3 3 3    3       3    44 3   2 2 555      33  6666  2  33  6666       2  2 2    2      33    2  3     555  3   3  111  2        2 4    3  44  44      999      3   0 3 6   6   3 3  3  3 44  3  555  33      0000  3   3 3 77 3  6666 44  3     88888   3  3       3   3       0         555    3 44   3 6666 77777     3      3 3 55       7  666         4 8888   55   8888  4 555555555            4 99    4 55 3 3   3    3   7  3 3   7 3     22 666 3 3      3   3  7777   3     999999999 7777     5   55        44444444    3   55 3     7        
lowQualScore                  :                                                                                                                                                                     ..      .     ...     .    .  .  .     ......    .  .       ...      . .  . .....  .. . .         . .... .......   . . .    .       .    .. .   . . ...      ..  ....  .  ..  ....       .  . .    .      ..    .  .     ...  .   .  ...  .        . .    .  ..  ..      ...      .   . . .   .   . .  .  . ..  .  ...  ..      ....  .   . . .. .  .... ..  .     .....   .  .       .   .       .         ...    . ..   . .... .....     .      . . ..       .  ...         . ....   ..   ....  . .........            . ..    . .. . .   .    .   .  . .   . .     .. ... . .      .   .  ....   .     ......... ....     .   ..        ........    .   .. .     .        
lowQualScore                  :                                                                                                                                                                     88      7     000     6    3  3  1     888888    1  1       444      1 1  1 55555  33 3 3         6 9999 6666666   1 1 1    1       1    22 1   9 9 000      99  2222  9  99  1111       9  9 9    9      99    9  1     444  1   6  444  1        3 8    1  11  22      666      1   2 1 2   2   1 8  1  1 22  1  444  22      5555  1   1 1 88 1  5555 22  1     44444   1  1       1   1       4         444    1 22   1 5555 77777     3      6 6 00       3  111         0 5555   55   5555  0 777777777            0 55    0 00 6 6   6    6   3  6 6   3 6     33 444 6 6      6   6  7777   6     666666666 7777     9   00        55555555    6   00 6     3        
consensus                     :                                                                                                                                                               AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-NA-A-CAACCAGAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTA--A-ACC-T-T---GACCAG--TTC--GCG-GT--AT----TTTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCCGGGTTTG-ATN-TT--CGTTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CG-AT---CG-CAGTGTT---GAA-AAT-A-TA-A-TA----A--GT-TGCAC---G-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATA-A--CCT-G----A-----TCACT-TTTACC-A-T--AATTTAT-GTAA-TCTTTTTTG-T----AAT--GAT----AA-TA-A----T-TTCAGAAAAACG-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GA----TCG-AAAAA-A------CC----ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
Reference ( family-11054 )    :                                                                                                                                                               AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-NA-A-CAACCAGAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTA--A-ACC-T-T---GACCAG--TTC--GCG-GT--AT----TTTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCCGGGTTTG-ATN-TT--CGTTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CG-AT---CG-CAGTGTT---GAA-AAT-A-TA-A-TA----A--GT-TGCAC---G-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATA-A--CCT-G----A-----TCACT-TTTACC-A-T--AATTTAT-GTAA-TCTTTTTTG-T----AAT--GAT----AA-TA-A----T-TTCAGAAAAACG-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GA----TCG-AAAAA-A------CC----ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
gi|1                          :                                                                                                                                                               AAAATT--CACTCA-CCCTA---CACGT-GTCA-TTTACGTCACC------CAAA-TC-CAA-CATTGTAAATAC-A-AA-TTTAATGC-AA-A-CAACCAGAA-AAAAGTACC-GTAGTGGT-T-TCAA-ACGAAAAGACTA--GTACC-T-----GATCAA--TTCCTG-G-GT--AT----TTTCTGTGTT-C-TGTCTCCAGTT--TT-A-TT-TTACT---AT-TCGATT---TATTTGTTTCCGGGTTGA-ATGGTT--CGTTCTGA-TGATGGGCCACG-AATTGCACA-CAGT-TCGA--CGGATTTACG--AGT-CT---GAA-AAT-A-TA-A-TA-------GT-TGCAC---G-ACT-TT-TTGAAAT-TCTGTTTTGCATATTTGACAC---AAT--A--CCT-G----G-----ACACT-TTTACC-A-T--AATTTAT-GAGATTCTTTTTTG-T----AAT--GAT----AA-TATA----T-TTCTG-AAAATG-CTTTTTC-C--C-G-AAC-GGGTGGAG-CA-G-GTAGG-GGGTGCAA---TAC-AACTCT-CCC-GA----TCG-AAAAAGA------CC----ATTCA-CTC--GGTGACAGCGC-----GAGAGGCG--T-AATTCTTAGAGCAC
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                         tcaaggatttttaaaaaaattcactcacccacaggggtgagtggcaggtaaTTG-ATG-T---CATATT---TAATGG-CCAGG-AGTTG-ACAGCGGT-TC-A--TG-AT---CGACAGTGTT---GAATAAT-A-TACA-TG----AAGGT-TGCGCAGCG-ACT-TTGTTGAA----TT-TTTTGT-TAATTGACAC---AAGA-AGACC--G----AGAGCGTCACT-TT-ACC-A----AATTGATCGTAA-TCTTTTTTG-T----GATATGAG----AG-TG-A----TATGCAGAAAA-CGAC--TTTC-C--G-GTAAC-AGGT-GAGGCA-GTGTA-G-GGG----A---T-C-CACTCT-CCC-G-----TCG-AAAAATA------TC----ACTCACCTC-TGGTGACTG--------GAGA-GCA--TAAATTC-T-GAGCGC
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                           TTTG-ATG-TT--TGTCCT---TG-T---CCGTG-A-TTG-ACA-CAGG-TC-A--CA-AT---CC-CAATATTTTTAAA-AAT-A-TG-A-TAGTTAA--AT-TACAC---A-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AACA-A--CCT-G----A-----TCA----TTAGC-A-T--TATTTAT-AT-A-TC-------------AAT--AAT----------A----T-TTCAGAAAAACT-C--TTTA-CGGC-G-AAT-GGGT-GAG-CA-G-GTA-G-TGGTG--A---T-C-AACTCT--CC-GA----TTG-AAAAA-AAACC--CC----ACTCACCTC-GGATGACGG--------GAGA-GCG--T-AATTC-TAGAGCACtg
gi|12                         :                                                                                                                                                               AAAATT--CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TT-CAAACAT---AGATAC-A-AA-T-----GC-CA-A-CAACCAGAt
gi|12                         :                                                                                                                                                                                                                                                                                                                         atttttcactcacccacgggtgagtgacaggtaCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACTATAAT-TCC-TT---TATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtttccgtcccggtttttattttactataattcctttattttg
gi|13                         :                                                                                                                                                                                                                                                                                                                                                atttttcactcacccacgggtgagtgacaggtaaaaattcactcacccaccacttgtcattactcacccaaattcaaacatagatacaaatgccaacaaccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAC---A-TCT-TG-TTGAAAT-TCT-TTTTGCATATTTGACAT---AATA-A--CCT-GTCATA-----TCACT-TTTACC-A-TAAAATTTAT-GTTA-TCTTTTTTG-T----AAT--GAT----AA-T--A----T-TTAAAAAAAACG-C--TTTC-C--C-G-AAC-G-----------G-GTA-G-GGGTG--A---T-C-AACTCT-CCC-GA----TTGAAAAAA-A------AC----ACTCACCTC-GGGTGACGGGAGACTCCGAGA-GTG--T-AATTC-TAGAGCACtg
gi|14                         :                                                                                                                                                                                                                                                                                                                    C-T-T---GACCAG--TTC--ACA-GT--AT----TTT--GT-TT-C-CGTC-CCGGTT--CTTA-Ttg
gi|15                         : agtgctctaggatttttaaaaaaaattcagtcacccacgggtgagtggcaggtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT---CACTCA-CCCACTGGCACTT-GTCA-TT-AC-TCGCC------CAAA-TC----------------C-A-AA-T-----AC-AA-A-CAACCAGAA-A---TTACC-ATAGTG-T-T-ACAT-ACGAAAA-TCCA--A-ACC-T-T---GACTGG--TTG--CCG-G-------------GGT-TT-T-CGTT-CCGGTT--TTTA-TT-TTACT---AT-
gi|16                         :                                                                                                                 aggatttttataatttttcgctcacccacgggtgagtggtaggtcaAAAAATTTCACTCA-CCCAC---
gi|16                         :                                                                                                                                                   ctaggatttttaAAAATT--CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-CA-A-CAACCAGAA-A---GTACC-GTAGTG-T-T-GCAA-ATGAAAT-AATA--A-ACC-T-T---GACCAG--TTT--GCG-GT--AT----TTTCgggtgagtcagagtggcaggtaaaaattcactcacccaccacttgtcattactcacccaaatccaaacataaatacaaataccaacaaccagaaagtaccgtagtgttgcaaatgaaataataaaccttgaccagtttgcggtattttc
gi|17                         :                                                                                                                                                                                                                                   ctaggatttttaaaaaatttcactcacccacgggtgagtcagagtggcaggta-T-T-GCAA-ACGAAAC-ACTA--T-ACC-T-T---GACCAG--TTT--GCG-GT--AT----TTTCTGT-TT-C-TGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCCAGGTTTG-ATT-TT--CGTTCT---TGATGG-GCACA-A-TTA-ACA-CAGT-TC-A--CG-AT---CG-CAGTGTT---GAA-AAT-A-TA-A-TA----A--GT-TGCAT---G-
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        A-TCTTGTTTG-T----AAT--GAT----AA-TA-G----TATTCAGAAAAAGG-C---TTC-C--C-G-AAC--GGT-GAGACA-G-GTA-G-GGGTG--A---T-C-AACTCTCCCC-GA----TCG-AAAAA-AAAAAACCC----ACTCA-CTC-GGGTGATGG--------GAGA-GTG--T-AATTC-TAGAGCAC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AT--GAT----AA-TA-G----TATTCAGAAAAACG-C--TT-C-C--C-G-AAC-GG-T-GAG-CA-G-GTA-G-GG-TG--A---T-C-AACTCT-CCCCGA----TCG-AAAAA-AAAAAACCC----ACTCAC-TC-GGGTGATGG--------GAGA-GTG--T-AATTC-TAAGGCACt
gi|2                          :                                                                                                                                                               AAAATT--CACTCAGCCCTA---CACTT-GTCAATT-AC--CACC------CAAA-TC-CAAACAT---AAATAC-A-AA-TTC---AC-CA-A-CAACCAGAAGA---GTA-C-ATAGTG-TCT-GATA-TCGAAAA-ACTT--A-ACC-C-TTTGGACCGA--T-----CG-GT--ATTCTATTTATGT-TT-CGCGT--CCGGTTTATTTAGTT-TCACT---AT-CTA-ATCC-TATTGGTGTCCAGGTGTGAATT-TT--CATTCT---ACATGG--CAGGCA-TTG-ACA-CGGTATC-AATGG-AT---CA-C-GTGTT---G-A-AAT-C-TA-ATTA----A--GT-GGCAC---G-ACT-TT-TTG--AT-TTT-TTTTTTA-ATTGAACAC---AATA-C--CTT-G----A-----TCCTT-TTTACC-A-T--AATTTATAGTAA-TCTTTTTTGAT----AAT--GATAATAAA-TA-A----T-TTCAGAAAAACG-CA-TTTCGC--CAG-AACAGAGT-GAG--A-G-GTA-GCAGGTGA-A---T-CAAACTCT-CCT-GG----TCG-ACAAT-A------TC----ACTCA-CTC-TGGT--C-G--------GAGA-GCA--T-AATGCATAGAt
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                       ctcctagattttgtgaagaattttcttcactccccatgggtgagtgacaggctTTG-ATT-TT--CGTTCT---TGATGG-CCACG-A-TTG-GCA-CAGT-TC-A--CG-AT---CG-CAGTGTT---GAA-AAT-A-T----TA----A--G----------------TT-TTGAAAT-TCT-TTTTGCAGATTTGACAC---AACA-A--CCA-G----A-----TCAC
gi|21                         :                                                                                                                                                                                                -TC-AC-TCACC------CTAG-TC-CAAACAT---AAATAC-A-AA-
gi|22                         :                                                                                                                                                                                                                                    attttttaataaatttcactcgccaacagatgagtggaaggtaaaaatAGTG-T-T-GCAT-ATGAAAA-ACTA--A-ACC-T-T---GACAAG--TTC--GCG-GT--AT----TTTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-c
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAAA-A------CTCCCAACTCAAATC-GGGTGACAG--------GAGA-GCA--T-AATTC-TAGAGCA
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        --C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACACT-CCC-GG----TCG-AAAA
gi|3                          :                                                                                                                                                                                                      -TCACC------CAAA-TCGCAAACAT---AAATAC-ACAA-TTC---AC-CGCA-AAACCAGAA-A---ATACCAGT-GTG-T-TTGCATTATGAAAA--CTA--A-ACT--------ACCAGGTTTC--GCGTATTCAT----TTTCTGT-TTGT-CGTC-CCG-TT--TTTA-TTCTTTCT---AA-TCA-TCCTATATTTTGTTCCAG-TTTG-ATG-TTTCCATTTTCTTTAATGG-CCAGG-A-TTG-ACA-CGGT--C-A--TG-GA---C--CAGTGTTA--GAA-AAT-AATATA-TA----A--GT-TGCAC---GGACTGTT-TTGAATTGTTT-TTTT---TATTTGACATCGAAATA-A--CCTTG----A-----CC-CTATTTACCCA-T--AATT-AT-GTA--TCTTTGTTG-TGTCGAAT--GAT----AAATA-AATATC-TTCAGAAAAACG-C--TTTC-C--C-G-AAC-AGGT-GAG-CAGG-GTAGG-GGGTG--A---T-C-AACTCT-CCC-GATGTCTCG--AAAA-T------TC----ACT-ACCTCTTGGTGACGGCA------GAGA-GCAATC-AATTC-TAGAGCAC
gi|4                          :                                                                                                                                                               AAAATTTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---AAATAC-A-AA-T-----AC-CA-G-CAACCATAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTG--A-TCC-T-T---GACCAT--TTA--TAG-GT--AT----TTTCTGT-GT-C-CGTA-CCTGTT--TTTA-TG-TTACT---AT-TCG-TT---TATTTGTTTCCGGGTTTG-ATT-TT--CGTTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CA-AT---CG-CGGTGTT---GAA-TAT-A-TA-A-TC----A--GT-TGCAC---A-GCT-TT-TTGAATT-TTT-TTTTGTA-ATTTGACAC---TATA-A--CCT-G----A-----TCACA-TTCACC-A-T--AATTTAT-GTAA-TCTTTTTTG-T----AAT--GAT----AA-TA-A----T-GTCAGAAAACCG-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-GTA-G-GGGTG--A---T-C-AACTCT-CCT-GA----TTG-AAAAA-A------TC----ACTCACCTC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCACt
gi|5                          :                                                                                                                                                               AAAATT--CACTCA-CCCAC---CTCTT-GTCA-TT-AC-TCGCC------CAAAAT----GGCAT---A--TAC-A-AA-T-----GC-AA-A-CAACCAGAA-A---TTACC-GAAGTT-T-T-ACAA-ACGAAAA-ACTA--A-ACC-T-T---GACTGG--TTC--------------------------------C-CCGGTG--TTT--------------C-TCG-TT---T--CTGTTC------TAG-ATT-TT--CGTTTT---TGATGG-CCATG-A-TTG-AAA-CAGT-CC-A--CG-AT---CG-CAATGTT---TAA-AAC---T----TA----A--GT-TGCAC---G-ACT-TT-TTTAAAC-TCT-TTCTGCATATTTGACAC---AATA-A--CCT-G----A-----TAACT-TTTACC-A-T--AATTTAT-GCAA-----------C----AAT--AAT----AA-T--A----T-TTTAGCAAAACA-C--TTTC-C--C-G-AAC-GGGT-GAG-CA-G-ATA-G-GGGTGC-ATGTT-C-AAATCT-CCC-GA----TTG-AAAAA-A------AC----ACTCACATC-GGGTGACGG--------GAGA-GCG--T-AATTC-TAGAGCAC
gi|6                          :                                                                                                               tcaaggattttttaaatttttcactcacccacgggagagtggcaggtaAAAATTTTCACTCA-CCCA
gi|6                          :                                                                                                                                                          ctagattttttTTCACTCA-CCCAC---CACTTAGTCA-TT-AC-TCACC------CAAA--C-CAAACAT---GAATAC-A-AAAT-----AC-AA-AACAACCAGAA-A---GT-------------T-GCAA-ACGGAAA-ACTAGAA-ACC-T-T---GACCAG--TTT--GCG-TG--AT----TTTCTGT-TT-C-CGTC-CCGGTT--TT-A-TT-TTACT---ATGTCG-TT---TA-TTGCTTCTGGATTTG-ATC-TT--CATTCT---TGATGG-CCACG-A-TGG-ACA-C-GT-TC-A--CG-AT---CG-TAGTGTT-----A-AATAA-TA-A-T-----A--GT-TGCAC---T-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATAGA--CCT-G----A-----TCACT-TTTACC-ATT--AATTTAT-GTAT-TCgctgtgagtagcaggtataattcactcacccaccacttagtcattactcacccaaaccaaacatgaatacaaaatacaaaacaaccagaaagttgcaaacggaaaactagaaaccttgaccagtttgcgtgattttctgtttccgtcccggttttattttactatgtcgtttattgcttctggatttgatcttcattcttgatggccacgatggacacgttcacgatcgtagtgttaaataataatagttgcactactttttgaaattctttttgcatatttgacacaatagacctgatcacttttaccattaatttatgtattc
gi|7                          :                                                                                                              ctagattttttaaaattttcactcacccagctgtgagtagcaggtataaAAAATTTTCACTCA-CCCAC---
gi|7                          :                                                                                                                                                                tttttTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-CAAACAT---GAATAC-A-AA-T-----AC-AA-A-CAACCAGAA-A---GT-------------T-GCAA-ACGGAAA-ACTA--A-ACC-T-T---GACCAG--TTT--GCG-GT--AT----TTTCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TATT-GCTTCTGGATTTG-ATC-TT--CATTCT---TGATGG-CCACG-A-TTG-ACA-CGGT-TC-A--CG-AT---CG-TAGTGTT---AAA-TAT-A-TA-A-TA----A--GT-TGCAC---T-ACT-TT-TTGAAAT-TCT-TTTTGCATATTTGACAC---AATA-A--CCT-G----A-----TCACT-TTTACC-A-T--AATTTAT-GTAT-TCTtggtgagtggcaggtattaattcactcacccaccacttgtcattactcacccaaatccaaacatgaatacaaatacaaacaaccagaaagttgcaaacggaaaactaaaccttgaccagtttgcggtattttctgtttccgtcccggtttttattttactattcgtttattgcttctggatttgatcttcattcttgatggccacgattgacacggttcacgatcgtagtgttaaatatataataagttgcactactttttgaaattctttttgcatatttgacacaataacctgatcacttttaccataatttatgtattct
gi|8                          :                                                                                                                   tttttaaaattttcactcacccactggtgagtggcaggtattaaAAAATTTTCACTCA-CCCAC---
gi|8                          :                                                                                                                                                   ctaggatttttaAAAATTT-CACTCA-CCCAC---CACTT-GTCA-TT-AC-TCATTGCACTACATG-TA-CAAACAT---AAATGC-A-AA-T-----AC-CA-A-CAACCATAA-A---GTACC-GTAGTG-T-T-GCAA-ACGAAAA-ACTA--A-ACCATAT---GACCAA--TTC--ACG-GT--AT----TTTCTGT-TT-C-CATC-CCAGTT--TTTA-TT-TTACT---AT-TCG-TT---TATTTGTTTCTGACTTTG-ATT-TT--CGTTCT---TGATGG-CC----A-TTG-ACA-TGGT-TC-A--CG-AT---CG-CATTGTT---GAA-AAT-A-TA-A-CA----A--GT-TGCAT---G-ACT-TT-TTGGAAT-TCT-TTTTTCAT-TT----------ATA-A--CCT-G----A-----TCACT-TTTAggataagtggcaggtaaaatttcactcacccaccacttgtcattactcattgcactacatgtacaaacataaatgcaaataccaacaaccataaagtaccgtagtgttgcaaacgaaaaactaaaccatatgaccaattcacggtattttctgtttccatcccagtttttattttactattcgtttatttgtttctgactttgattttcgttcttgatggccattgacatggttcacgatcgcattgttgaaaatataacaagttgcatgactttttggaattcttttttcatttataacctgatcactttta
gi|9                          :                                                                                                                       ctaggatttttaaaaattttcactcacccacggataagtggcaggtTTCACTCA-CCCAC---CACTT-GTCA-TT-AC-TCACC------CAAA-TC-C-AACAT----GATACAA-AA-T-----ACAAA-A-CAACCAGAA-A--------------G-T-T-GCAA-ACGGAAA-A-TA--C-AAC-T-T---GACCAG--TTT--GCG-TT--A------ATCTGT-TT-C-CGTC-CCGGTT--TTTA-TT-TTACT---AT-TCG-TT---TA-TTGCTTCT-GATTTG-ATC-TT--C-TTCT---TGATGG-CCACG-A-TTGAACA-C-GT-TC-A--CG-AT---CG--AGT-TT-----A-AAT-A-AT-A-TA----A--GTATACAC---T-A---TT-TTGAAAT---C-TTTTGCATATTTGACAC---AATA-G--ACT-G----A-----TCACT-TTTACC-A-T--TAATTA---------TTTTCTG-T----A