lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111
lowQualScore : 666666666666666666666 22 22 11 4 1111 44444444444444444444444444444444444444444444444444 1 11 1 111 3333 7777777 111 44 111 11 444 1111 333333 44 2222 33 1 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 1111 11 1 11111 55555555555555555 2 1 111 5555 2 1 66666666666666 111111 11 44444444444444444 111 111 111111 222222 1 111 555555555555555555555555555555555555555 1111111 2 2222 222222 222222222 3333333 22222222222 2222222 33 222222 11111 11 1 11 11 44444444444444444444444444444444444444444444 22222222 2222222222 111 22 111 4444 55555 111 111 33333333333 3 1 2222222222222 4 111 222222 6666 33 111
lowQualScore : 777777777777777777777 8 77 22 11 0 7777 8 77777777777777777777777777777777777777777777777777 0 33 0 555 8888 7777777 222 00 0 444 1 11 0 555 8 0 5 0 7777 8 3 777777 6 00 5555 44 5 88 4 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 0 1 0000 99 11 5 0 22222 55 999 66 77777777777777777 66 5 4 5 5 1 5 222 7777 5 66 5 4 00000000000000 5 0 666666 5 5 33 22222222222222222 0 000 5 5 000 666666 77 777777 1 5 5 77 000 5 666666666666666666666666666666666666666 4444444 0 6 2222 333333 444444444 9999999 8 11111111111 0000000 8 8 0 8 77 11 88 000000 3 8 88888 8 0 2 8 99 8 5 11 11 55555555555555555555555555555555555555555555 8 5 77777777 0 8 9999999999 888 11 99 6 6 111 6666 99999 99 6 6 6 6 6 3 66666 6 44444 111 222 33333333333 8888 8 0 0 3 5555555555555 1 0 444 444444 8 1111 11 0 8 0 222 8 8
lowQualScore : ..................... . .. .. .. . .... . .................................................. . .. . ... .... ....... ... .. . ... . .. . ... . . . . .... . . ...... . .. .... .. . .. . . ............................................................................................................................................................................... . . . .... .. .. . . ..... .. ... .. ................. .. . . . . . . ... .... . .. . . .............. . . ...... . . .. ................. . ... . . ... ...... .. ...... . . . .. ... . ....................................... ....... . . .... ...... ......... ....... . ........... ....... . . . . .. .. .. ...... . . ..... . . . . .. . . .. .. ............................................ . . ........ . . .......... ... .. .. . . ... .... ..... .. . . . . . . ..... . ..... ... ... ........... .... . . . . ............. . . ... ...... . .... .. . . . ... . .
lowQualScore : 222222222222222222222 0 00 00 00 0 0000 0 99999999999999999999999999999999999999999999999999 0 88 0 888 2222 0000000 222 00 8 000 0 00 8 444 0 8 0 8 0000 0 2 888888 7 00 8888 22 5 88 2 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 6 6666 00 00 0 0 22222 11 555 99 66666666666666666 99 0 4 7 7 4 7 000 9999 0 99 0 4 11111111111111 7 1 444444 7 7 66 99999999999999999 1 000 7 7 000 444444 99 666666 4 7 7 99 000 7 222222222222222222222222222222222222222 2222222 4 8 8888 000000 000000000 2222222 0 88888888888 2222222 0 0 8 0 44 00 88 000000 8 0 22222 0 8 2 0 44 0 0 00 00 88888888888888888888888888888888888888888888 0 6 66666666 8 0 2222222222 888 44 22 7 7 777 0000 33333 22 7 7 7 7 7 7 00000 7 88888 777 000 88888888888 2222 0 0 0 2 8888888888888 4 0 000 888888 0 0000 22 8 0 8 666 0 0
consensus : TTCAAGTTTTCCTTGAAAA-ACTAATGACT--TAAAATTT-CAAATA-AAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--C-CATCATA-T-ATTCT--GAAA---AGG--AAAAATGTTGAA-GA--TT-ATAA--TCATGTAACTGAAAATT--G-GGGGTA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-TAT-AAC-ACACA-AATTGAT-GA-CTTTAC-AATCATCATTTTAAATCAA-TTTTAGGATC----------AGTACTTGT--ATTTA--------ATATACA---ACATTACAT-TTATGC-AATAT-GATTGNNTACTTACGNAANNNNNGGNNNCGNNNATANTATATATA-AGATATACA---T-TATAT------GTATATA----GN------------------------TACA-CATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATTTT---CC--TT--------TTT--TTTT-CT-TGAAAA-AA-GAT-TAAAA-TAGGATT---GAAACATTCT--CCTGGTACAT-TTTT---C--CATG---C-AATGGTCTA------TAA-GT-ATTCAAAAAAAGG--------------TTT---AAAAA-GT-TTA---AATTACT------TN-ATTTTTATA-AATTACC-A-TGAC-AAC--T---AA-GTGAA-------T--CACT-T-TTC----A--------------GTTTT-C--T--AAATATAAGGAATT--AAAAAGTGT------TTA--G------AAT------GTA-GTATAAACNTAATGTGTATG-T--TTGT-C-GTGG-CAACATAATTAATT-ACAT-C----AATTCCTTCT-AAA---A-CT-ATTTCAGCCT-TTTCTTCC-CATGGA--AAT--AGGGGAAA----AAACTGTCC-AATAA--TTT----AATAAA-CT-A-TGTG-CAAT------ATGTA-TACA--------GGTTTC-AGTAATGATCTAA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-AAAGG--A--AAAA--GT-CA-C-GCA-TAGGAAGTCACAGGGGAAAA-AAAGTC---ACAAT---AT-TNAATG-CATG-TATTTT-TNAAATT-CTGACA-GTACTAATAG----G-A-AN---AATGTCAC-TGT---AAAAA-AA--NAGT-CAAACTG-TATGTGT-ACATTTTTCTA-TGTACATGT-ATAT-TTATTTTC-CCGGGG
Reference ( gi|2 ) : TTCAAGTTTTCCTTGAAAA-ACTAA-GATT--TAAAATTT-CAAAT--AAAAA--TAA--GGCATTGTTCT----AGTAATA-TTT---T---AA--GTAAC--C-CATTATA-T-ATTCC--GAAA---AGG--AAAAATGTTGAA-GA--TT-ATAA--CCATGAAACTGAAACTTTTGGGGGGTA-A-CGGCTTACCATGGCAAC---GTAA--TAACCCCTAACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACATTTAT-AAC-ACACATGATTGAT-G--CTTTACCAATCATCATTTTAAATCAATTTTTAGGATC----------AGTAGTTGT--ATTT---------TCGTACA---ACATTACAT-TTATGCTAGTATTGAT-GCCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATACA---T-TACAT------GTATATA----AT------------------------TACA-CATACTTTTGAA----GTACTAAG-AGC-AC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATTTT---TC--TTG------GTTT--TTTT-CTGTGAAAA-AA-GAT-TAAAA-TAGGATTTGAAAAACATT-T--CCTGGGACAT-TTTT---C--CAT----C-AATGGTCTA------TAA-GT-ATTTAAAAAAAGG--------------TTT---AAAAA-GT-TTA---AATTACT------TT-ATTTTTATA-AATTACC-A-TGAC-AAC--T---AA-GTGAA-------T--C-------------A--------------GTTTT-C--T--AAATATAAAGAAT---AAAAAGTGT------TTA--G------AAT------GTA-GTATAACCTTAATGT-TATG-T--T-GT-C-GTGG-CAACACAATTAATT-ACAT-C----AATTCCTTCT-AAA---A-CT-ATTTCAGTCT-TTTTCTTC-CATGGA--AAT--AGGGGAAA----AAACTGT-C-AATAA--TTT----AATAAA-CT-A-TGTG-CAAT------ATGTA-TACA--------GTTTTG-AGTAATGATCTAATTTTCTTA--G-GATGTAGGAA-AG---AAAGTC-CGAAAGG--A--AAAA--GT-CA-C-GCA-TAGGAAGTCACAGGGGAAAA-AAAGTTCA-ACAAT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTG-CA-GTACTAATAG----G-A-AT---AATGTCACATGT---AAAAA-AA--TAGT-CAAA-TGTTATGTGTAACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
gi|1 : TTCAAGTTTTCCTTGAAAA--CTAA-CAATGATACAATTTTCAAAT--AAAAAAATAGATGGCATT-TTCTTCTAAGTAATA-TGA---T---AACTGTAACACC-CAT-ATA-TTATTTCATGAAAGGAAGG--GAAAATGTTGAA-GACATTGATAAATCCATGTA-CTGAAAATT--GGGGGGTAGA-CG--TTACCATGGCAACCACGTAAAATAACCCC--ACA-AATCATAAAAATGT---TT----TCGT-GCATTTTGTCACAT--ATCAAC-ACACAACATTG-T-GA-CTTTAC-AATCATCATT--AAATCCAATTTTAGGATC----------AGT--TTGT--ATTTATACATAGGTAATACA---GCAT-ACAGATTATGC-AATATGGATTGGCTATTTACAAAATATATAGATACGATAATAT---------AGATAT------------------------TA----GA------------------------TACA-CATACTTT-GAAAGTAGTACTAAG-AAC-GC-ATCGTTATA--C-TT--ACTGTCATTTAC--ATTTTCTTTC--TTG-------TTT--TCCT-CT-TGAAAA-AAAGAT-TAAAAGTAGAAT----GAAACATT-CTCCCTGGTACAT-TTT-------CATTAAAC-AATGGTCTA------TAAAGT-ATTCAAAAAA-GG--------------TTT---ACAAACGTATTA---AATTATT------TT-ATTTTT-TATAATTACC-A-CGAC-AAC--T---A--GTGAA-------T--C-------------ACTTTATCCATTAACGTTTTTC--TTAGAATATAA-GAATTAAAAAAAGTGT------TTATAG------AATC-----GTA-GTATAAACCTATGGT-TATG-T--TTGT-CCGTGGGCAACATTAT-AAT--ACAT-A----AAT--CTTCT-TAATTTA-CT-ATTTCAGTCT-TTTC--TC-CATGGAGAAAT--AGGGGGAAGGAAAAACTGT-C-AATA---TTT----AATAAAACT-AATGTG-CAATTGATACATG-A-TACA--------GGTTTC--GTAATGATCTGAATTTCTTAAGG-GATGTAGGAAGAG---AAGGGT-CAAAGGG--A--AAAAAAGT-CAAC-GCAATAGGAAGTCACAGGGAAAAATAAAGTC---ACAAT---ATATTAATG-CATG--A-TTT-TCAAATT-CTGACATATACTAATAGGATCG-A-AT---AATGTCAC-TGTATAAAAAA-AA--TAGT-CAAACTG-TATGTG--ACATTTT--TG-TGT-CATGTCGTAT-TTATTTTC-CGGG
gi|3 : taaccctttagactaccaaaagaatTTCAAGTTTTCCTTGAAAATGCTAATGAC----AAAATTT-CAAAT--AAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---TTATAAT-GTAAC--CTCAT-ATAAT-ATTCT--GAAA---AGGCAAAAAATGTTGAAAGA--TT-ATAA--TCATGTA-CTGAAATTT----GGGGTA-AGCGG-TTACCATGGCAAC---GTAA--T-ACCCC--ACA-AATCAATAAAATGTGTTTTTTTGTTGT-GCATTTTGTCACA--TAT-AACAACACA-GATTGAT-GAACTTTACAACTCATCA-TTTAAATCAA-TTTTAGG-CC------------TAGTTGT--ATTTA--------ACATATATACACATAACAT-GTATGC-AATATTG
gi|9 : accttttaacatacacagaaaaTTCAAGTTTTCC----------------TT--TAAAACTT-GAAATA-AAAAA--TAA--GGCATT-TTCT----AATAATAGTTT---TATAAA--GTAAC--C-AA-TATA-C-ATTTT---AAA---AGG--AAACATGTTGAA-GA--TT-ATAA--TCATGTAA-TGAAA----TATGGGTTA-A-AGG-TTACCATGGGAAG---GGAA--TAACCC--AACA-AATCATAAAAATGTGTTTT----TCATGGAATTTT---ACATATAA-AAC-ACACA-AATTGATGG--CTTTA-AAGTCATCA-TTTGAATGGA-TTTTAGGATC-------------ACTTGT--ATTT---------ATATAAA---ATATTACAggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgaagtactcagtgcgccatgttataacttttactgtcattacattttcttttttttttccttgaaaaaagattaaaatgattgaaacattctcctggtacatttttcatgacaatggtcctaagtatttcaaaaaaggttttgggttttttttttaaaaagtttaaataactttatttttataattaccgatgacaaactaagaagtgaatcactttat
gi|10 : ccctttaactagcagcaaatTTCAAGTTTTCCTT-CAAA-ACTGATGA-C--AAAAATTT-CTAATA-AAAAA--TAA--GGCATT-TTCT----AGTAATG-TTTTTAT---AAT-GTAGC--C-CA-CATA-T-ATCCT---------------AAAATGTTGAA-GA--TT-ATAA--TTATG-TACTGAAAAT-----GGGGTA-A-CGG-TTATCATGGCAAC---GAAA--TAATCCC--ACA-GGTCATAAAAAT-TTTTTT----TCGT-GCATTTTATCACA--TA--AAC-ACACAT-ATGGATGG--TTTTA--GATAACCATTTCAA--TAGATTTTAGGATC-------------ACTTGT--ATaccatacatat
gi|18 : gccctttaactacctgaaaat-ACTAATGAC----AAAATTT-CAAATAAAAAAA--TGA--AGCATT-TTCT----AGTAATA-TTT---T---AT--ATAA
gi|8 : GGGTA-T-CG--TTACCATGGCA-C---GTAA--TAACCC--AACACAATCATAAA--TGTGTT-------CGT-GCATTTTGTCACAT--AT-A-C-AC-CA--AATGAT-G--ACCTAC--ATCATCATT---AATCAATTTT---GGTC----------AGT---TGT--ATTT---------------A---TCATTATA---------------GA--GCATACTTATGCAAATATGGATGCTATACATAGTATATATA-AAATATA-----T-TA---------G-ATATA----GA------------------------TACA-CATACTTT-GAA----GTACTAAGAAGCGGC-TT-GTTATA--C--T-TACTGTCA-TTAC--ATTTT---CC--TTT------TTTT--TTTC-CTATGAAAA-AC-GATATAGAA-TA-GATTTGATGAACATTCT--CCTGGTACAT-TTt
gi|12 : AT-AAG-ACACA-AATTGAT-GA-CTTTAC-AGTCATCA-TTTGAATCAA-TTTTAGGATCACTTGACACTAGTATTTATACATTT---------ATATACA---ACA-TACAT-TTAgcagtacaagtctatttctaaaacatttacaagcaatcagtcgataccataaattgctgttttatt
gi|7 : CAGATATACAAAGTATACAT------TTATATA----ATATTGGATGTTATTTTCAATAGATATGCA-CATG-TTTTGAA----ATACCAAG-TGC-GC-AT-GTTTTA--T-TT-TACTGTCA-TTAC--ATTTT---CT--TT--------TTT--TTTT-CTaatgcaattttggacgcaaaat
gi|11 : gaatcacttgtatttataAGATATACA---TGTATAT------AGATATA----GA------------------------TACA-CATACTTT-AAA----GTACTAAG-TGC-GC-AT-GCTATA--C-TT-TACT------------TTTT---CC--T----------------------TGAAAA-AA-GAT-TAAAA-T-TGATT---GAAACATTCT--CCTGGTACAT-TTTtcatacaatagtctaccggtataagtattcaaaaaggatttttaaaaaagtttttgctatttaattttcataattgccatgacaactaaatgaatcacattattccaaagttttcttaatataggaatgcaaagtgtttaaaattagaatatagtataaacatattttgtatttgccgtggcaacataataattatatcaatccctcctaaaactatttcaaccttttcttcccatgaaataggggaaaactgtccaataaagtatgatcaatttgtattactagtatactggtttcagtaatactgttatttt
gi|5 : tatttacaatatatatatttATGTATA---T-TATATACAGAAGTATATAGAACATG-----------------------TATA-CATAATTTTGAA----GTACTAAG-AGC-GG-A--GTTATA--CCTT-TACTGTCATT-ACTGATTTGG--TC--TT--------TTT--TTTT-CCTTGAAAA-AA-GAT--AAAA-TAGAAGT---GAAACATC-T--CCTGGTACAGATTTT---C--AATA---CGAATGGTCTA------TAA-GT-ATC-AAAAAAAGG--------------TTT---AAAAA-GT-TTA---AATTACT------TT-ATTTTCTTA-TATTACC-A-TGAC-AAC--T---AA-GTGAA-------T--CACTTTATCCTTAAA--------------GTTTT-C--T--AAATCT-AAGAA----AAAAAGTGT------TTA--G------AAT-------TA-GTACAAACCTAATGT-TATA-TTGT-GT-C-GTGG-CAACATAA-TAATT-ACATGCATCAAATTCCTTCTAAAA---A-CT-ATTTCAGTCTCTTCTTTCC-CATGGA--AAT--ATGG---A----AAACTGTCC-AATA----TT----AGTAAA-CTAA-TGTG-CAAT------A-GTA-TACA--------GGTTTC-AGTAATGATCTAA-TTTCTTA--GTGATGTAGGAA-AGTTAAAAGGC------GA--A--AAAA--GT-CA-C-GCA-TA-GAAGTCA---AGGAGAA-AAAGTC---ACAATATAAT-TAAATGCCATG-TA-TTT-TCAAATT-CTGACA-GTAC-AATAG----GAA-AT---AATGTCAC-TGT---AAAAA-AAATTAGTCCAAACTG-TATGTGT-ACATTTTTCTG-TGTACATGT-ATATCTTATTTTC-CCGGGGc
gi|4 : ATATATA---T-CATAC------GAAT-TAT---AC------------------------TATATCATACTTT-GAA----GTACTAAG-TGT-GC-ATAGTTATA--C-TTGTACTGTCATTTAC--ATTAT---TCA-TTT------CCTT--GTTC-CT-TGAAAAGAA-GATATAAAA-TAGCATT---GAAACATTCT--CCTGCTACAT-TTTCTAAC--TAC----A-GATGG-CTA------TAA-GTTATTCCAAAAAGGT--------------TCT---AAAAA-GT-TTATGAAGTTACT------TTCATTTTT-TA---TTACCCACTGCA-AACCGT---AACGTGAAATCACTTT--CCTTA---------A--------------GTTTT-TCTT--AAATATAAGAAATT--AAAAAGTGT------TTA--G------AATTAGAATGTAAGTATA-CCT--ATGCGTATG-T--TTGTTC-G-AG-CAACATTAT-AATTCACAT-C----AATTCCTTCT-AAA---AACT-ATTTCAGACT-TTT-CTTCGCATTGA--AATTTAGGGGAAA----AA-CTGT-CCAATA---TTT----ATCA---CTGA-TGTG-CA-T------GTGTAGTACATGTAGCAGGTGTTGCAGTAATGATCGA--TTTCTTA--G-GATGTA-GAA-AG---AAAGTC---AAAGGGAA--AAAA--GT-CA-CGGCA-TAGGAAGTCTCAGGG---AA-AAAG-TCA-CTAAT---AT-TTAA-G-CATGTTATTTTATT--ATTACTGACA-GTACTAATAG----G-A-ACAGAAATGTCAC-TAA---AAAAA-AG--AAGT-CAAACTG-TATGTGTTACATTTTTCTACTGTACATGT-A-AT-TTGTTTTCTCCGGGGg
gi|6 : tgtagtaca---T-TACA-------ATATATA----A--------------------------ATA-CATACTTT-GAA----GTACTAAG-AGT-GC-AT-GCCATA----------------TTAC--ATTTT---TTAATCGAGGCAGGCTTCATTTTACT-TAAAAC-AA-AAA-TCAAA-TAAAATT---AAAACATTCT--TCTGGTACAT-CTTC---T--TA-----C-AATGGCCCA------TAA-GT-ATTCAAAA-------------------T------------T-TTA---AATTACT------TA-ATTTTT-T--AACCACC-A-TGGC-AAC--T---AA-ATGAA-------TAACATTATCCTTA---A--------------GTTTT-C--T--AAATAT-AAGAAT---AAAAATTGC------TTA--GAATTAAAAT------TTA-GTATAAACAT-ATTT-TATGTT--T-GT-C-GTGG-CAACATAA-TGATT-AGAT-C----AATTCCTTCT-AAA---T-TTGATT--AACCT-TTTCTTCC-CAT-GA--AAT--AGGGTA-------------------AA--TTTGTGCAATAAA-CG-A-TGTG-CAAT------ATGTA-TGCA--------GGTTTC-AGTAATGATTTAA-TTTCTTA--G-GATGTTGGAA-GT---AAAGTCACAGAAAA--A--AAAA--GT-CA-C-GGA-TAGGAAATCACAGG---AAA-AAGG--CACACCAT---AT-TAAA--------TATTTT-AAAAATG-TTA-CA-GTAGTACTAG----G-ACAG---AAAGTCAC-TGT---AAAAA------AGT-CAAACTG-TATGTGT-ACATTTTTATA-TGTACATGT-ATAT-TTATTATC-CGGGGt
gi|3 : atatttatataatattgaatgttatTTTTGAA----GTACTCAG-TGC-GCCAT-GTTATAACT-TT-TACTGTCATT-AC--ATTTT---CT--TT--------TTT--TTTT-CCTTGAAAA-AA-GAT-TAAAA-T--GATT---GAAACATTCT--CCTGGTACAT-TTTT------CATGA--C-AATGGTCC-------TAA-GT-ATTTCAAAAAAGGTTTTGGGTTTTTTTTTT---AAAAA-GT-TTA---AATAACT------TT-ATTTTTAT--AATTACCGA-TGACAAAC--TAAGAA-GTGAA-------T--C-------------A--------------CTTTa
gi|13 : accttttaacatacacagaaaattcaagttttccttgaaaatgctaatgacaaaatttcaaataaaaaaataaggcattttctagtaatatttttataatgtaacctcatataatattctgaaaaggcaaaaaatgttgaaagattataatcatgtactgaaatttggggtaagcggttaccatggcaacgtaataccccacaaatcaataaaatgtgtttttttgttgtgcattttgtcacatataacaacacagattgatgaactttacaactcatcatttaaatcaattttaggcctagttgtatttaacatatatacacataacatgtatgcaatattgggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTC-T--CCTGGTACAT-TTT-------CATG---C-AATGGTCTA------CAA-GT-ATTC--AAAAAGGT-------------TTT---TAAAA-GT-TTA---AATTACTAGTATCTA-ATTTTTAT--AATTACC-A-TGGC-AAC--T---AA-at
gi|7 : T-TTTT---CTTCATA---C-AATAGTCTACCGGTATAA-GT-ATTCAAAAAG-GA--------------TTTTTAAAAAA-GT-TTT---TGCTATT------TA-ATTTTCATA-A-TTGCC-A-TGAC-AAC--T---AA-ATGAA-------T--CACATTATTCCAA-A--------------GTTTT-C--T--TAATAT-AGGAAT---GCAAAGTGTTTAAAATTA--G------AAT------ATA-GTATAAACATATTTTGTAT--T--T-GC-C-GTGG-CAACATAA-TAATT-ATAT-C----AATCCCTCCT-AAA---A-CT-ATTTCAACCT-TTTCTTCC-CAT-GA--AAT--AGGGG--A----AAACTGTCC-AATAAAGTAT----GATCAA-TT---TGTATTACT------A-GTA-TACT--------GGTTTC-AGTAATACTGTTATTTT
gi|15 : gaatcacttgtatttatacagatatacaaagtatacatttatataatattggatgttattttcaatagatatgcacatgttttgaaataccaagtgcgcatgttttattttactgtcattacattttctttttTA--G-GGTGTAGGAA-AT---AAAGTCAC--AGGG--A--AAAA--ATCCA-C-GGA-TAAAGAGTCACA--GGAAAG-AAAGC----ACAAT---GT----AT----TA-TTTTTT-TAAAATT-
gi|14 : --G-GGTGTAGGAA-AG---AAAGTC---ACAGG--AACAAAA--GT-CA-C-A-A-GAAAAAGCCAC-GGGGAAAA-AAAGT-----CAAT---AT-T
gi|16 : G----A-A-AG---AAAGTCAC-TGT---AAAAAAAA--AAGT-CAAACTG-TGTGTGT-ACATTTTTCTA-TGTACATGT-A-----TATTCTC-CCGGGGctgacagtactactaagaaagtcaatgtaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): CAACCCTTTAGCTACCAGAAAATTTCAAATTTTCCTTCAAAGCTGATGACAAAATTTCAA
Unaligned ( gi|19 ): AGTCACAGGGAAAAAAAGTCACGGAAAAAAGTCACTGGAAAAAAGGCACAACATAT
Unaligned ( gi|20 ): AGTCACAGGGAAAAAAGTCACGGAAAAAAGTCACTGGAAAAAAGGCACAACATAT
Unaligned ( gi|21 ): GTCGGAAGAGAAGAGGTCACAGCGAAAAAGTCAGAATGTTATA
Unaligned ( gi|22 ): TCATACATGCATGCATATTTCCCGGTGGGAG
Alignments
lowQualScore : 2222 22 111 1111 22222222222 1111111 111 1111111111 11 11 11 11 22222 11 111 11 1111 2222 111 11111 333333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 6666666666666666666666666666666666 1111111 1 11 1 2222222222222222222222 11 11 444444444444 1 33333333333333 111111 22222 1 66666666666666666666 111 22222 111111111 111111 22 222222222 1 2 111111 1 111 222 4444444 1 2222 2 3333333333333333 111 2222222222222 11 333333333333333333333 1111 1111 111 111 111
lowQualScore : 6 1111 1 1 77 5 777 6 4444 6 44444444444 5555555 444 8 6666666666 11 8 11 8 11 11 0 8 99999 6 888 33 111 99 1 44 6 2 4444 6 1 7777 77 5 000 1 88 66 88 33333 5 5 555555555 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 44444 5555555555555555555555555555555555 3333333 66 5 8 9999 55 4 4 8 00 66 1 0 66 4 3333333333333333333333 00 8 4 4 00 4 1 5 1 777 66 4 77 222222222222 4 4 4 4 3 0 00000000000000 66 5 888 444444 66 44444 0 5 5 66 888 5 5 22222222222222222222 111 99999 1 66666 999999999 999999 00 99 1 000000000 6 3 6 3 6 555555 1 3 111 6 2 6 000 99 1111111 0 3333 99 0 6 1111111111111111 7 6 6 6 6 77 5 5 000 1111111111111 66 5 5 5 00 0 2 55 44 4 1 66 4 66 666666666666666666666 8888 5 6 2222 5 5 1111 1 5 000 222 6 6 6 222 6 777 6 6
lowQualScore : . .... . . .. . ... . .... . ........... ....... ... . .......... .. . .. . .. .. . . ..... . ... .. ... .. . .. . . .... . . .... .. . ... . .. .. .. ..... . . ......... .............................................................................................. . ..... .................................. ....... .. . . .... .. . . . .. .. . . .. . ...................... .. . . . .. . . . . ... .. . .. ............ . . . . . . .............. .. . ... ...... .. ..... . . . .. ... . . .................... ... ..... . ..... ......... ...... .. .. . ......... . . . . . ...... . . ... . . . ... .. ....... . .... .. . . ................ . . . . . .. . . ... ............. .. . . . .. . . .. .. . . .. . .. ..................... .... . . .... . . .... . . ... ... . . . ... . ... . .
lowQualScore : 7 4444 4 4 44 7 000 7 2222 7 99999999999 8888888 000 0 4444444444 00 0 00 0 00 44 8 0 66666 7 777 33 777 22 0 00 7 5 2222 7 0 0000 44 7 444 4 00 44 00 77777 7 7 444444444 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 44444 0000000000000000000000000000000000 8888888 99 0 2 4444 44 4 4 9 66 33 9 0 11 4 6666666666666666666666 66 9 4 4 99 4 9 4 8 888 11 0 22 333333333333 4 4 4 4 0 1 66666666666666 44 0 888 444444 00 55555 0 0 0 99 888 0 7 99999999999999999999 777 33333 0 88888 333333333 222222 22 22 0 333333333 7 3 7 7 7 000000 7 3 777 7 2 7 000 22 7777777 8 7777 88 0 7 8888888888888888 3 7 7 7 7 99 7 7 000 1111111111111 99 0 0 0 66 1 2 99 00 4 8 11 4 99 999999999999999999999 3333 7 7 1111 7 7 0000 9 7 000 555 7 7 7 555 7 555 7 7
consensus : TTCAAGTTTTCCTTGAAAA---ACTAATGAC-TAAAATTT-CAAATAAAAAAA-ATAAGGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-T-AT-AAC-ACACA-A-ATTGATG-ACTTTAC-AA-TCATCATTTTAAATC-GATTTT-AGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATT--G-A----TTG--CCTA---TTTACGCAATATATGGATACGTACATANTATATATA---AGATAT---ACAT-T-ATATG-----------TAT-----ATAG-----ATA--CA-CATACTTTTGAA----GTACTAAGN-GCG-C-AT-GTTATA--CTT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACAT-TTT-CCA--T---A-C-A-ATGGTCTAT-AAGT-ATTCNAAAAAAGG--------------TTTA-AAAAGT-TTA---AATTACT------TT-ATTTTTATA-AATTACC-A-TGAC-AAC--T---AA-GTGAA-TCAC-TT----T-----TCC----AG---TTTTC--T--AAATATAAGGAA-T--AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TGT-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGGG----G-AAAAACTGTCCAATAA--TTTAAT-AAACTAATGTG-CA--------AT------ATGTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
Reference ( family-1086 ) : TTCAAGTTTTCCTTGAAAA---ACTAATGACTTAAAATTT-CAAATAAAAAAA-ATAAGGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-T-AT-AAC-ACACA-A-ATTGATG-ACTTTAC-AA-TCATCATTTTAAATC-AATTTT-AGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATAT---G-A----TTG--NNTA---CTTACGNAANNNNNGGNNNCGNNNATANTATATATA---AGATAT---ACAT-T-ATATG-----------TAT-----ATAG-----NTA--CA-CATACTTTTGAA----GTACTAAGN-GCG-C-AT-GTTATA--CTT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACAT-TTTTCCA--T---G-C-A-ATGGTCTAT-AAGT-ATTCAAAAAAAGG--------------TTTA-AAAAGT-TTA---AATTACT------TN-ATTTTTATA-AATTACC-A-TGAC-AAC--T---AA-GTGAA-TCAC-TT----T-----TC-----AG---TTTTC--T--AAATATAAGGAATT--AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGTGTATGTT-TGT-CGT-GGCAACATAATTAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGCCTTTTC-TTCCCATG--GAAA--TAGGG----GAAAAAACTGTCCAATAA--TTTAAT-AAACT-ATGTG-CA--------AT------ATGTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TNAATG-CATG-TATTTT-TNAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--NA-GT-CAAACTG-TATGTG-T-ACATTTTTCTA-TGTACATGT-ATAT-TTATTTTC-CCGGGG
gi|1 : TTCAAGTTTTCCTTGAAAACTAAC-AATGA--TACAATTTTCAAATAAAAAAATAGATGGCATT-TTCTTCTAAGTAATA-TGA---T---AACTGTAACACCCAT-AT---ATTATTTCATGAAAGGAAGG--GAAAATGTTG-AAGACATTGATAAATCCATGTA-CTGAAA-ATT---GGGGGGTAGA-CG--TTACCATGGCAACCACGTAAAATAACCCC-A-CA-AATCATAAAAATGT---TT----TCGT-GCATTTTGTCACAT---ATCAAC-ACACA-ACATTG-TG-ACTTTAC-AA-TCATCATT--AAATCCAATTTT-AGGATCAGT------TTGTATTTATAC----AT-AGGTAATACA---GCAT-ACAGATT--ATGC-AATAT---GGA----TTG--GCTA---TTTACAAAATATATAGATACG---ATAATATA--------GATAT-----------------------------------TAG-----ATA--CA-CATACTTT-GAAAGTAGTACTAAGA-ACG-C-ATCGTTATA--CTT--ACTGTCATTTAC--ATT-T--TC--------TTTCTTGT--TTTCCT--CT-TGAAAAA-AAGAT-TAAAAGTAGAA-T---GA--AACATTCTCCCTGGTACAT-TTT--CA--TTAAA-C-A-ATGGTCTATAAAGT-ATTC-AAAAAAGG--------------TTTACAAACGTATTA---AATTATT------TT-ATTTTT-TATAATTACC-A-CGAC-AAC--T----A-GTGAA-TCAC-TT----TATCCATT-----AACGTTTTTC--TTAGAATATAA-GAATTAAAAAAAGTGT------TTATAG------AATCGTAG--TATAAACCT----ATGGTTATGTT-TGTCCGTGGGCAACATTA-TAA-T-ACAT-A----AAT--CTTCT-TAATTTACT-ATTTCAGTCTTTTC-T--CCATGGAGAAA--TAGGGGGAAGGAAAAACTGT-CAAT-A--TTTAATAAAACTAATGTG-CA--------ATTGATACATG-ATACAGGT-TT-C-GTAATGATCTGAA-TTTCTTAAGG-GATGTAGGAAGAG---AAGGGT-C-A-AAGGGAAA--AAAAGT-CAAC-GCAATAGGAAGTCACAGGGAAAAATAAAGTC--AC-A--AT---ATATTAATG-CATG--A-TTT-TCAAATT-CTGACATATACTAATAGGATCG-A-A---TAATGTCAC-TGTATAAAAAAAA--TA-GT-CAAACTG-TATGTG---ACATTTT--TG-TGT-CATGTCGTAT-TTATTTTC-CGGG
gi|10 : taaccctttagactaccaaaagaatTTCAAGTTTTCCTTCAAAA----CTGATGACA-AAAATTT-CTAATAAAAAA---TAAGGCATT-TTCT----AGTAATG-TTT---TTATAAT-GTAGC--CCA-CAT---AT-ATCC--T-------------AAAATGTTG-AAGA--TT-ATAA--TTATGTA-CTGAAA-AT-----GGGG-TA-A-CGG-TTATCATGGCAAC---GAAA--TAATCCC--ACA-GGTCATAAAAAT-TTTTTT----TCGT-GCATTTTATCACA--T-A--AAC-ACACA-T-ATGGATG-GTTTTA--GA-TAACCATTTC-AATA-GATTTT-AGGATC-------ACTTGTAT
gi|11 : gccctttaactacctgaaaatACAATATATATATTTAGATAT---ACATGT-ATATA-----------GAT-----ATAG-----ATA--CA-CATACTTT-AAA----GTACTAAGT-GCG-C-AT-GCTATA--CTT-TAC---------------------------------------TTTTTC--CT-TG-AAAA-AAGAT-TAAAA-T-TGATT---GA--AACATTCT-CCTGGTACAT-TTT
gi|12 : tattt-AT-AAG-ACACA-A-ATTGATG-ACTTTAC-AG-TCATCA-TTTGAATC-AATTTT-AGGATCACTTGACACTAGTATTTATACATTTAT-A-----TACA---ACA-TACAT-TTAAATGC-AATc
gi|13 : TCT-CCTGGTACAT-TTT--CA--T---G-C-A-ATGGTCTAC-AAGT-ATTC--AAAAAGGT-------------TTTT-AAAAGT-TTA---AATTACTAGTATCTA-ATTTTTAT--AATTACC-A-TGGC-AAC--T---AA-tttggacgcaaaat
gi|14 : --G-GGTGTAGGAA-AG---AAAGT--C-A-CAGG---AACAAAAGT-C-AC-A--AGAAAAAGCCAC-GGGGAAAA-AAAGT----C-A--AT-----------------------------ATT-CTGACA-GTACTACTAA----G-A-A---A---GTCAA-TGT---AA
gi|15 : TA--G-GGTGTAGGAA-AT---AAAGTC-A-C-AGGG---A--AAAAATCC-AC-GG-ATAAAGAGTCACA--GGAAAG-AAAG-C--AC-A--AT---GT----AT----TA-TTTTTT-TAAAATT-
gi|16 : G----A-A-A---GAAAGTCAC-TGT---AAAAAAA--AAAGT-CAAACTG-TGTGTG-T-ACATTTTTCTA-TGTACATGT-A-----TATTCTC-CCGGGG
gi|17 : agTTCAAATTTTCCTT-CAAA---GCTGATGAC--AAAATTT-CAAaa
gi|18 : caaccctttagctaccagaaaat---ACTAATGAC--AAAATTT-CAAATAAAAAAA--TGAAGCATT-TTCT----AGTAATA-TTT---T---A
gi|19 : AGTCACA-GGGAAAA-AAAGTC--AC-tataat
gi|2 : TTCAAGTTTTCCTTGAAAA---ACTAA-GATTTAAAATTT-CAAATAAAAA----TAAGGCATTGTTCT----AGTAATA-TTT---T---AA--GTAAC--CCATTAT---AT-ATTC--CGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--CCATGAAACTGAAA-CTTTTGGGGGG-TA-A-CGGCTTACCATGGCAAC---GTAA--TAACCCCTAACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-TTAT-AAC-ACACATG-ATTGATG--CTTTACCAA-TCATCATTTTAAATC-AATTTTTAGGATCAGT----AGTTGTATTT---------TCG-----TACA---ACATTACAT-TT--ATGCTAGTATT--G-A----T-G--CCTA---TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC--AGATAT---ACAT-T-ACATG-----------TAT-----ATAA-----TTA--CA-CATACTTTTGAA----GTACTAAGA-GCA-C-AT-GTTATA--CTT-TACTGTCATTTAC--ATT-T--TT--------CTTGG--T--TTTTTT--CTGTG-AAAA-AAGAT-TAAAA-TAGGATTTGAAA--AACATT-T-CCTGGGACAT-TTTTCCA--T-----C-A-ATGGTCTAT-AAGT-ATTTAAAAAAAGG--------------TTTA-AAAAGT-TTA---AATTACT------TT-ATTTTTATA-AATTACC-A-TGAC-AAC--T---AA-GTGAA------------------TC-----AG---TTTTC--T--AAATATAAAGAA-T--AAAAAGTGT------T--TAG------AAT-GTAG--TATAACCTTA---ATGT-TATG-T-TGT-CGT-GGCAACACAATTAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTT-CTTCCATG--GAAA--TAGGG----GAAAAAACTGT-CAATAA--TTTAAT-AAACT-ATGTG-CA--------AT------ATGTATACAGTT-TT-GAGTAATGATCT-AATTTTCTTA--G-GATGTAGGAA-AG---AAAGTC-CGA-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTTCAAC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTG-CA-GTACTAATAG----G-A-A---TAATGTCACATGT---AAAAAAA--TA-GT-CAAA-TGTTATGTG-TAACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGGggaaaaaagtcactggaaaaaaggcacaacatat
gi|20 : AGTCAC-A-GGGA---A--AAAAGT-C-AC-GG-A-AAAAAGTCACTGG---AAA-AAAGGC--AC-A--AC---AT-
gi|3 : TTCAAGTTTTCCTTGAAAAT--GCTAATGAC--AAAATTT-CAAATAAAA-AA-ATAAGGCATT-TTCT----AGTAATA-TTTTTAT---AAT-GTAAC--C--TCATATAAT-ATTC--TGAAA---AGGCAAAAAATGTTGAAAGA--TT-ATAA--TCATGT-ACTG-AA-ATT---TGGGG-TA-AGCGG-TTACCATGGCAAC---GTAA--T-ACCCC--ACA-AATCAATAAAATGTGTTTTTTTGTTGT-GCATTTTGTCACA--T-AT-AACAACACA-G-ATTGATGAACTTTAC-AACTCATCA-TTTAAATC-AATTTT-AGGCCTAG-------TTGTATTTA-------AC-A-----TATATACACATAACAT-GT--ATGC-AATATTGGG-AAAATTTGCCCCTATTTTTTA-GCAATATAT--ATAC--ATATACTATATATA---AGat
gi|3 : accttttaacatacacagaaaaTTTTGAA----GTACTCAGT-GCG-CCAT-GTTATAACTTT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTTC-CT-TG-AAAA-AAGAT-TAAAA-T--GATT---GA--AACATTCT-CCTGGTACAT-TTTT-CA--T---GAC-A-ATGGTCC-T-AAGT-ATTTCAAAAAAGGTTTTGGGTTTTTTTTTTA-AAAAGT-TTA---AATAACT------TT-ATTTTTAT--AATTACCGA-TGACAAAC--TAAGAA-GTGAA-TCAC-TT----T-----taggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgaagtactcagtgcgccatgttataacttttactgtcattacattttcttttttttttccttgaaaaaagattaaaatgattgaaacattctcctggtacatttttcatgacaatggtcctaagtatttcaaaaaaggttttgggttttttttttaaaaagtttaaataactttatttttataattaccgatgacaaactaagaagtgaatcactttat
gi|4 : accttttaacatacacagaaaattcaagttttccttgaaaatgctaatgacaaaatttcaaataaaaaaataaggcattttctagtaatatttttataatgtaacctcatataatattctgaaaaggcaaaaaatgttgaaagattataatcatgtactgaaatttggggtaagcggttaccatggcaacgtaataccccacaaatcaataaaatgtgtttttttgttgtgcattttgtcacatataacaacacagattgatgaactttacaactcatcatttaaatcaattttaggcctagttgtatttaacatatatacacataacatgtatgcaatattgggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAT---ATAT-C-ATACG-----------AATT----ATA------CTA--TATCATACTTT-GAA----GTACTAAGT-GTG-C-ATAGTTATA--CTTGTACTGTCATTTAC--ATTAT--TC--------ATT----TCCTTGTTC--CT-TG-AAAAGAAGATATAAAA-TAGCATT---GA--AACATTCT-CCTGCTACAT-TTT-CTAACT---A-C-AGATGG-CTAT-AAGTTATTCCAAAAAGGT--------------TCTA-AAAAGT-TTATGAAGTTACT------TTCATTTTT-TA---TTACCCACTGCA-AACCGT---AACGTGAAATCAC-TT----T-----CCTTA--AG---TTTTTCTT--AAATATAAGAAATT--AAAAAGTGT------T--TAG------AAT--TAGAATGTAAGTATACCTATGCGTATGTT-TGTTCG--AGCAACATTAT-AATTCACAT-C----AATTCCTTCTAAAA---ACT-ATTTCAGACTTTTC-TTCGCATT--GAAATTTAGGG----G-AAAAACTGTCCAAT-A--TTTATC---ACTGATGTG-CATGTGTAGTAC------ATGTA-GCAGGTGTTGCAGTAATGATC--GA-TTTCTTA--G-GATGTA-GAA-AG---AAAGT--C-A-AAGGGA-A--AAAAGT-C-ACGGC-ATAGGAAGTCTCAGGG---AA-AAAGTC--ACTA--AT---AT-TTAA-G-CATGTTATTTTATT--ATTACTGACA-GTACTAATAG----G-A-ACAGAAATGTCAC-TAA---AAAAAAG--AA-GT-CAAACTG-TATGTGTT-ACATTTTTCTACTGTACATGT-A-AT-TTGTTTTCTCCGGGGat
gi|5 : tgtagtacaATGTATA---TTATAT---AC-----AGAAG-----------TAT-----ATAGAACATGTA--TA-CATAATTTTGAA----GTACTAAGA-GCG-G-A--GTTATAC-CTT-TACTGTCA-TTACTGATT-TGGTC--------TTT----T--TTTTTC--CT-TG-AAAA-AAGA--TAAAA-TAGAAGT---GA--AACA-TCT-CCTGGTACAGATTTTCAA--T---A-CGA-ATGGTCTAT-AAGT-A-TCAAAAAAAGG--------------TTTA-AAAAGT-TTA---AATTACT------TT-ATTTTCTTA-TATTACC-A-TGAC-AAC--T---AA-GTGAA-TCAC-TT----TA----TCCTTAAAG---TTTTC--T--AAATCTAAGAA-----AAAAAGTGT------T--TAG------AAT--TAG--TACAAACCTA---ATGT-TATATTGTGT-CGT-GGCAACATAA-TAATT-ACATGCATCAAATTCCTTCTAAAA---ACT-ATTTCAGTCTCTTCTTTCCCATG--GAAA--TATGG-------AAAACTGTCCAATA----TTAGT-AAACTAATGTG-CA--------AT------A-GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--GTGATGTAGGAA-AGTTAAAAGGC-------GA---A--AAAAGT-C-AC-GC-ATA-GAAGTCA---AGGAGAA-AAAGTC--AC-A--ATATAAT-TAAATGCCATG-TA-TTT-TCAAATT-CTGACA-GTAC-AATAG----GAA-A---TAATGTCAC-TGT---AAAAAAAATTA-GTCCAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATATCTTATTTTC-CCGGGGt
gi|6 : ATATT-TATATA---A--TATTGAATGT-T-ATTTACAA--------TAT-----ATAA-----ATA--CA---TACTTT-GAA----GTACTAAGA-GTG-C-AT-GCCATA----T-TAC----ATTT-----TT-TAATCGAGGCAGGCTT----C--ATTTTA--CT-TA-AAAC-AAAAA-TCAAA-TAAAATT---AA--AACATTCT-TCTGGTACAT-CTT--CT--T---A-C-A-ATGGCCCAT-AAGT-ATTCAAAA-------------------T---------T-TTA---AATTACT------TA-ATTTTT-T--AACCACC-A-TGGC-AAC--T---AA-ATGAA-TAACATTATCCT-----TA-----AG---TTTTC--T--AAATATAAGAA--T--AAAAATTGC------T--TAGAATTAAAAT-TTAG--TATAAACAT----AT-TTTATGTT-TGT-CGT-GGCAACATAA-TGATT-AGAT-C----AATTCCTTCT-AAA---TTTGATT--AACCTTTTC-TTCCCAT---GAAA--TAGGG----T--AAATTTGTGC----------AAT-AAACG-ATGTG-CA--------AT------ATGTATGCAGGT-TT-CAGTAATGATTT-AA-TTTCTTA--G-GATGTTGGAA-GT---AAAGTCAC-AGAAAA---A--AAAAGT-C-AC-GG-ATAGGAAATCACAGG----AA-AAAGGC--AC-ACCAT---AT-TAAA--------TATTTT-AAAAATG-TT-ACA-GTAGTACTAG----G-ACA---GAAAGTCAC-TGT---AAAAA-----A-GT-CAAACTG-TATGTG-T-ACATTTTTATA-TGTACATGT-ATAT-TTATTATC-CGGGGg
gi|7 : ATATACA---AAGTAT---ACAT-TTATATAATATTGGATGTTATTTTCAATAG-----ATATGCA-CATG-TTTTGAA----ATACCAAGT-GCG-C-AT-GTTTTA--TTT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTT--CT-TC-A----------TACAA-TAG----------------TCT-ACCGGTATA-------------------A-GTATTCAAA-AAGG-ATTTTTAAAAAAG--------------TTT-------T-T------GCTATT------TA-ATTTTCAT--AATTGCC-A-TGAC-AAC--T---AA-ATGAA-TCACATTA---T-----TCCAA--AG---TTTTC--T--TAATAT-AGGAA-T--GCAAAGTGTTTAAAAT--TAG------AAT-ATAG--TATAAACATA---TTTTGTA--TT-TGC-CGT-GGCAACATAA-TAATT-ATAT-C----AATCCCTCCT-AAA---ACT-ATTTCAACCTTTTC-TTCCCAT---GAAA--TAGGG----G--AAAACTGTCCAATAAAGTATGAT-CAATT--TGTATTA--------CT------A-GTATACTGGT-TT-CAGTAATACTGT-TA-TTTa
gi|8 : gaatcacttgtatttatacagGGG-TA-T-CG--TTACCATGGCA-C---GTAA--TAACCC--AACACAATCATAAA--TGTGTT-------CGT-GCATTTTGTCACAT---AT-A-C-AC-CA-A-AT-GATG-ACCT-AC-A--TCATCATT---AATC-AATTTT-GG--TCAGT-------TGTATTTA----------------T-------CATTATA-------------------G-A------G--CATA---CTTATGCAAATATGGATGCTATACATAGTATATATA---AAATAT---A--T-T-A---G------------AT-----ATAG-----ATA--CA-CATACTTT-GAA----GTACTAAGAAGCGGC-TT-GTTATA--CTT--ACTGTCATT-AC--ATT-T--TC--------CTT----T--TTTTTTTCCTATG-AAAA-ACGATATAGAA-TAGATTT---GATGAACATTCT-CCTGGTACA--TTTGCAG--T---A-C-A-A--GTCTAT-------TTCTAAAACA----------------TTTA-CAAt
gi|9 : TTCAAGTTTTCCTTTAAA-----------ACTTGAAAT----------AAAAA-ATAAGGCATT-TTCT----AATAATAGTTTTA-T---AAA-GTAAC--CAAT-AT---AC-ATTT--T-AAA---AGG--AAACATGTTG-AAGA--TT-ATAA--TCATGTAA-TGAAATAT-----GGGT-TA-A-AGG-TTACCATGGGAAG---GGAA--TAA-CCC-AACA-AATCATAAAAATGTGTTTT----TCATGGAATTTT---ACATAT-AA-AAC-ACACA-A-ATTGATG-GCTTTAA-AG-TCATCA-TTTGAATG-GATTTT-AGGATC-------ACTTGTATTT--------AT-A-----TAAA---ATATTACAA-CC--ATAC--ATAT---gcaatcagtcgataccataaattgctgttttatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTCGGAAGAGAAGAGGTCACAGCGAAAAAGTCAGAATGTTATA
Unaligned ( gi|22 ): TCATACATGCATGCATATTTCCCGGTGGGAG
Alignments
lowQualScore : 1 2222 222 222 1111 22222222222 1111111 111 1111111111 11 11 11 11 22222 11 111 11 1111 2222 111 11111 333333333 66666666666666666 111 222222 44444444444 111 111111111 111111 55555555555555555555555555 11111 1 2222222222222222222222 11 22222222222 1 33333333333333 111111 3333 5555555555555555555 11111 111111111 111111 22 1111 111111 1 111 222 222222222 1 222 111 33333333333333333333 111 2222222222222 11 333333333333333333333 1111 1111 111 111 111
lowQualScore : 0 1111 1 1 444 5 999 6 4444 99 22222222222 5555555 444 8 6666666666 11 8 11 8 11 11 0 8 99999 6 888 33 111 99 1 44 6 2 4444 6 1 7777 77 5 000 1 88 66 88 33333 77 5 555555555 22222222222222222 1 111 3 222222 99 0 55555555555 444 8 8 2 777777777 1 2 1 4 999999 33333333333333333333333333 0 22222 66 8 9999 55 4 4 8 9999 66 1 4 4 66 4 3333333333333333333333 00 8 4 4 8 4 1 5 1 777 66 4 55 44444444444 4 4 4 4 4 0 00000000000000 66 5 888 444444 55 0000 5 5 5 5 66 888 5 5 9999999999999999999 6 99 99 9 33333 999999999 999999 00 99 1 9999 6 6 666 6 6 6 555555 1 3 111 6 0 6 000 99 777777777 0 111 0 222 55 44444444444444444444 6 6 6 6 77 5 5 000 1111111111111 66 5 5 5 00 0 2 55 44 4 1 66 4 66 777777777777777777777 8888 5 6 2222 5 5 1111 1 5 000 222 6 6 6 222 6 777 6 6
lowQualScore : . .... . . ... . ... . .... .. ........... ....... ... . .......... .. . .. . .. .. . . ..... . ... .. ... .. . .. . . .... . . .... .. . ... . .. .. .. ..... .. . ......... ................. . ... . ...... .. . ........... ... . . . ......... . . . . ...... .......................... . ..... .. . .... .. . . . .... .. . . . .. . ...................... .. . . . . . . . . ... .. . .. ........... . . . . . . .............. .. . ... ...... .. .... . . . . .. ... . . ................... . .. .. . ..... ......... ...... .. .. . .... . . ... . . . ...... . . ... . . . ... .. ......... . ... . ... .. .................... . . . . .. . . ... ............. .. . . . .. . . .. .. . . .. . .. ..................... .... . . .... . . .... . . ... ... . . . ... . ... . .
lowQualScore : 8 4444 4 4 444 7 222 7 2222 22 44444444444 8888888 000 0 4444444444 00 0 00 0 00 44 8 0 66666 7 777 33 777 22 0 00 7 5 2222 7 0 0000 44 7 444 4 00 44 00 77777 11 7 444444444 22222222222222222 0 777 5 333333 88 6 00000000000 000 6 0 8 111111111 3 1 0 5 888888 66666666666666666666666666 1 55555 99 2 4444 44 4 4 9 7777 33 9 6 6 11 4 6666666666666666666666 66 9 4 4 9 4 9 4 8 888 11 0 55 11111111111 4 4 4 4 0 1 66666666666666 44 0 888 444444 88 2222 0 0 0 0 99 888 0 7 9999999999999999999 7 22 22 3 33333 333333333 222222 22 22 0 0000 7 7 888 7 7 7 000000 7 3 777 7 3 7 000 22 222222222 8 777 3 555 88 00000000000000000000 7 7 7 7 99 7 7 000 1111111111111 99 0 0 0 66 1 2 99 00 4 8 11 4 99 222222222222222222222 3333 7 7 1111 7 7 0000 9 7 000 888 7 7 7 555 7 555 7 7
consensus : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAA--TAAGGCATT-TTCT----AGTAATA--TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-T-AT-AAC-ACACA-A-ATTGATG-ACTTTAC-AA-TCATCATTTTAAATC-GATTTT-AGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATAC-GTACATANTATATATA---AGATAT---AC--GT-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAGN-GCG-C-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTT-CCA--T---AC-A-ATGGTCTAT-AAG-TATTC-AAAAAAGG--------------TTTA-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCCT---A-----G-TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
Reference ( family-1086 ) : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAA-ATAAGGCATT-TTCT----AGTAATA--TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-T-AT-AAC-ACACA-A-ATTGATG-ACTTTAC-AA-TCATCATTTTAAATC-GATTTT-AGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATGGATAC-GTACATANTATATATA---AGATAT---AC--AT-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAGN-GCG-C-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTT-CCA--T---AC-A-ATGGTCTAT-AAG-TATTCNAAAAAAGG--------------TTTA-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC----A-----G-TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
gi|1 : TTCAAGTTTTCCTTGAAAACTAAC-AATGA-T-ACAATTTTCAAATAAAAAAATAGATGGCATT-TTCTTCTAAGTAATA--TGA---T---AACTGTAACACCCAT-AT---ATTATTTCATGAAAGGAAGG--GAAAATGTTG-AAGACATTGATAAATCCATGTA-CTGAAA-ATT---GGGGGGTAGA-CG--TTACCATGGCAACCACGTAAAATAACCCC-A-CA-AATCATAAAAATGT---TT----TCGT-GCATTTTGTCACAT---ATCAAC-ACACA-ACATTG-TG-ACTTTAC-AA-TCATCATT--AAATCCAATTTT-AGGATCAGT------TTGTATTTATAC----AT-AGGTAATACA---GCAT-ACAGATT--ATGC-AATATGGA------TTG--GCTA---TTTACAAA-ATATATAGATAC-G---ATAATATA--------GATAT-----------------------------TAGA-----TA--CACATACTTT-GAAAGTAGTACTAAGA-ACG-C-ATCGTTATA--C-TT--ACTGTCATTTAC--ATT-T--TC--------TTTCTTGT--TTTCCT--CT-TGAAAAA-AAGAT-TAAAAGTAGAA-T---GA--AACATTCTCCCTGGTACA--TTTT--CA--TTAAAC-A-ATGGTCTATAAAG-TATTC-AAAAAAGG--------------TTTACAAACGTATT---AAATTATT------TT-ATTTTT-TATAATTA-CC-A-CGAC-AAC--T----A-GTG-AATCAC-TT-TATCC----ATTAACGTTTTT--CTTAGAATATAA-GAA-TTAAAAAAAGTGT------TTATAG------AATCGTAG--TATAAACCTA---TGGT-TATGTT-TG-TCCGTGGGCAACATTA-TAA-T-ACAT-A----AAT--CTTCT-TAATTTACT-ATTTCAGTCTTTTC-T--CCATGGAGAAA--TAGGGGGAAGG-AAAAACTGT-CAAT-ATTTAATAA-AACTAATGTGCA--------ATTGATACAT--G-ATACAGGT-TT-C-GTAATGATCTGAA-TTTCTTAAGG-GATGTAGGAAGAG---AAGGGT-C-A-AAGGGAAA--AAAAGT-CAAC-GCAATAGGAAGTCACAGGGAAAAATAAAGTC--AC-A--AT---ATATTAATG-CATG--A-TTT-TCAAATT-CTGACATATACTAATAGGATCG-A-A---TAATGTCAC-TGTATAAAAAAAA--TA-GT-CAAACTG-TATGTG---ACATTTT--TG-TGT-CATGTCGTAT-TTATTTTC-CGGG
gi|10 : taaccctttagactaccaaaagaatTTCAAGTTTTCCTTCAAAA----CTGATGACA-AAAATTT-CTAATAAAAAA---TAAGGCATT-TTCT----AGTAATG--TTT---TTATAAT-GTAGC--CCA-CAT---AT-ATCC--T-------------AAAATGTTG-AAGA--TT-ATAA--TTATGTA-CTGAAA-AT-----GGGG-TA-A-CGG-TTATCATGGCAAC---GAAA--TAATCCC--ACA-GGTCATAAAAAT-TTTTTT----TCGT-GCATTTTATCACA--T-A--AAC-ACACA-T-ATGGATG-GTTTTA--GA-TAACCATTTC-AATA-GATTTT-AGGATC-------ACTTGTAT
gi|11 : gccctttaactacctgaaaatACAATATATATATTTAGATAT---AC--ATGTATAT------A---GATATAGA-----TA--CACATACTTT-AAA----GTACTAAGT-GCG-C-AT-GCTATA--C-TT-TAC---------------------------------------TTTTTC--CT-TG-AAAA-AAGAT-TAAAA-T-TGATT---GA--AACATTCT-CCTGGTACA--TTTT-C
gi|12 : tattt-AT-AAG-ACACA-A-ATTGATG-ACTTTAC-AG-TCATCA-TTTGAATC-AATTTT-AGGATCACTTGACACTAGTATTTATACATTTAT-A-----TACA---ACA-TACAT-TTAAATGC-AATTTTG
gi|13 : TCT-CCTGGTACA--TTTT-C-A--T---GC-A-ATGGTCTAC-AAG-TATTC--AAAAAGGT-------------TTTT-AAAAGT-TT---AAATTACTAGTATCTA-ATTTTTAT--AATTA-CC-A-TGGC-AAC--T---AA-gacgcaaaat
gi|14 : --G-GGTGTAGGAA-AG---AAAGT--C-A-CAGG---AACAAAAGT-C-AC-A--AGAAAAAGCCAC-GGGGAAAA-AAAGT----C-A--AT-----------------------------ATT-CTGACA-GTACTACTAA----G-A-A---A---GTCAA-TGT---AA
gi|15 : TA--G-GGTGTAGGAA-AT---AAAGTC-A-C-AGGG---A--AAAAATCC-AC-GG-ATAAAGAGTCACA--GGAAAG-AAAG-C--AC-A--AT---GT----AT----TA-TTTTTT-TAAAATT-
gi|16 : G----A-A-A---GAAAGTCAC-TGT---AAAAAAA--AAAGT-CAAACTG-TGTGTG-T-ACATTTTTCTA-TGTACATGT-A-----TATTCTC-CCGGGG
gi|17 : agTTCAAATTTTCCTT-CAAA---GCTGATGAC--AAAATTT-CAAaa
gi|18 : caaccctttagctaccagaaaat---ACTAATGAC--AAAATTT-CAAATAAAAAAA--TGAAGCATT-TTCT----AGTAATA--TTT---T---A
gi|19 : AGTCACA-GGGAAAA-AAAGTC--AC-tataat
gi|2 : TTCAAGTTTTCCTTGAAAA---ACTAA-GATTTAAAATTT-CAAATAAAAA----TAAGGCATTGTTCT----AGTAATA--TTT---T---AA--GTAAC--CCATTAT---AT-ATTC--CGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--CCATGAAACTGAAA-CTTTTGGGGGG-TA-A-CGGCTTACCATGGCAAC---GTAA--TAACCCCTAACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT-TTAT-AAC-ACACATG-ATTGATG--CTTTACCAA-TCATCATTTTAAATC-AATTTTTAGGATCAGT----AGTTGTATTT---------TCG-----TACA---ACATTACAT-TT--ATGCTAGTATTGA------T-G--CCTA---TTNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNC--AGATAT---AC--AT-TACAT------G---TATATAAT-----TA--CACATACTTTTGAA----GTACTAAGA-GCA-C-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TT--------CTTGG--T--TTTTTT--CTGTG-AAAA-AAGAT-TAAAA-TAGGATTTGAAA--AACATT-T-CCTGGGACA--TTTTTCCA--T----C-A-ATGGTCTAT-AAG-TATTTAAAAAAAGG--------------TTTA-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCA--------------------G-TTTT--CT--AAATATAAAGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAACCTTA---ATGT-TATG-T-TG-T-CGT-GGCAACACAATTAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTT-CTTCCATG--GAAA--TAGG-----GGAAAAAACTGT-CAATAATTTAAT-A-AACT-ATGTGCA--------AT------AT--GTATACAGTT-TT-GAGTAATGATCT-AATTTTCTTA--G-GATGTAGGAA-AG---AAAGTC-CGA-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTTCAAC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTG-CA-GTACTAATAG----G-A-A---TAATGTCACATGT---AAAAAAA--TA-GT-CAAA-TGTTATGTG-TAACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGGggaaaaaagtcactggaaaaaaggcacaacatat
gi|20 : AGTCAC-A-GGGA---A--AAAAGT-C-AC-GG-A-AAAAAGTCACTGG---AAA-AAAGGC--AC-A--AC---AT-
gi|3 : TTCAAGTTTTCCTTGAAAAT--GCTAATGAC--AAAATTT-CAAATAAAA-AA-ATAAGGCATT-TTCT----AGTAATA--TTTTTAT---AAT-GTAAC--C--TCATATAAT-ATTC--TGAAA---AGGCAAAAAATGTTGAAAGA--TT-ATAA--TCATGT-ACTG-AA-ATT---TGGGG-TA-AGCGG-TTACCATGGCAAC---GTAA--T-ACCCC--ACA-AATCAATAAAATGTGTTTTTTTGTTGT-GCATTTTGTCACA--T-AT-AACAACACA-G-ATTGATGAACTTTAC-AACTCATCA-TTTAAATC-AATTTT-AGGCCTAG-------TTGTATTTA-------AC-A-----TATATACACATAACAT-GT--ATGC-AATATTGGGAAAATTTGCCCCTATTTTTTA-GCA-ATATAT--ATAC---ATATACTATATATA---AGat
gi|3 : accttttaacatacacagaaaaTTTTGAA----GTACTCAGT-GCG-CCAT-GTTATAACT-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTTC-CT-TG-AAAA-AAGAT-TAAAA-T--GATT---GA--AACATTCT-CCTGGTACA--TTTT-TCA--TG--AC-A-ATGGTCC-T-AAG-TATTTCAAAAAAGGTTTTGGGTTTTTTTTTTA-AAAAGT-TT---AAATAACT------TT-ATTTTTAT--AATTA-CCGA-TGACAAAC--TAAGAA-GTG-AATCAC-TT-T-taggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgaagtactcagtgcgccatgttataacttttactgtcattacattttcttttttttttccttgaaaaaagattaaaatgattgaaacattctcctggtacatttttcatgacaatggtcctaagtatttcaaaaaaggttttgggttttttttttaaaaagtttaaataactttatttttataattaccgatgacaaactaagaagtgaatcactttat
gi|4 : accttttaacatacacagaaaattcaagttttccttgaaaatgctaatgacaaaatttcaaataaaaaaataaggcattttctagtaatatttttataatgtaacctcatataatattctgaaaaggcaaaaaatgttgaaagattataatcatgtactgaaatttggggtaagcggttaccatggcaacgtaataccccacaaatcaataaaatgtgtttttttgttgtgcattttgtcacatataacaacacagattgatgaactttacaactcatcatttaaatcaattttaggcctagttgtatttaacatatatacacataacatgtatgcaatattgggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTACA--ATATATAT-------CAT---ACGAAT-TATAC----------TATAT--------------CATACTTT-GAA----GTACTAAGT-GTG-C-ATAGTTATA--C-TTGTACTGTCATTTAC--ATTAT--TC--------ATT----TCCTTGTTC--CT-TG-AAAAGAAGATATAAAA-TAGCATT---GA--AACATTCT-CCTGCTACA--TTTT-CTAACT---AC-AGATGG-CTAT-AAGTTATTCCAAAAAGGT--------------TCTA-AAAAGT-TTATGAAGTTACT------TTCATTTTT-T---ATTACCC-ACTGCA-AACCGT---AACGTGAAATCAC-TT-T-CCTTA--A-----G-TTTTTCTT--AAATATAAGAAATT---AAAAAGTGT------T--TAG------AAT--TAGAATGTAAGTATACCTATGCGTATGTT-TGTT-CG--AGCAACATTA-TAATTCACAT-C----AATTCCTTCTAAAA---ACT-ATTTCAGACTTTTC-TTCGCATT--GAAATTTAGG-----GG-AAAAACTGTCCAAT-ATTTATC----ACTGATGTGCATGTGTAGTAC------AT--GTA-GCAGGTGTTGCAGTAATGATC--GA-TTTCTTA--G-GATGTA-GAA-AG---AAAGT--C-A-AAGGGA-A--AAAAGT-C-ACGGC-ATAGGAAGTCTCAGGG---AA-AAAGTC--ACTA--AT---AT-TTAA-G-CATGTTATTTTATT--ATTACTGACA-GTACTAATAG----G-A-ACAGAAATGTCAC-TAA---AAAAAAG--AA-GT-CAAACTG-TATGTGTT-ACATTTTTCTACTGTACATGT-A-AT-TTGTTTTCTCCGGGGat
gi|5 : tgtaATGT---AT--AT-TATATACAGAAG---TATATAGAACATGTA--TACATAATTTTGAA----GTACTAAGA-GCG-G-A--GTTATA--CCTT-TACTGTCATT-ACTGATT-TGGTC--------TTT----T--TTTTTC--CT-TG-AAAA-AAGAT--AAAA-TAGAAGT---GA--AACAT-CT-CCTGGTACAGATTTT-CAA--T---ACGA-ATGGTCTAT-AAG-TAT-CAAAAAAAGG--------------TTTA-AAAAGT-TT---AAATTACT------TT-ATTTTCTTA-TATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-TATCCTTAAA-----G-TTTT--CT--AAATCTAAGAA------AAAAAGTGT------T--TAG------AAT--TAG--TACAAACCTA---ATGT-TATATTGTG-T-CGT-GGCAACATAA-TAATT-ACATGCATCAAATTCCTTCTAAAA---ACT-ATTTCAGTCTCTTCTTTCCCATG--GAAA--TATG-----G---AAAACTGTCCAATA--TTAGT-A-AACTAATGTGCA--------AT------A---GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--GTGATGTAGGAA-AGTTAAAAGGC-------GA---A--AAAAGT-C-AC-GC-ATA-GAAGTCA---AGGAGAA-AAAGTC--AC-A--ATATAAT-TAAATGCCATG-TA-TTT-TCAAATT-CTGACA-GTAC-AATAG----GAA-A---TAATGTCAC-TGT---AAAAAAAATTA-GTCCAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATATCTTATTTTC-CCGGGGt
gi|6 : ATATT-TATATA---A--TATTGAAT--GT-TATTT------ACAATATATAAA-----TA--CA--TACTTT-GAA----GTACTAAGA-GTG-C-AT-GCCATA-----T-TAC----ATTT-----TT-TAATCGAGGCAGGCTT----C--ATTTTA--CT-TA-AAAC-AAAAA-TCAAA-TAAAATT---AA--AACATTCT-TCTGGTACA--TCTT-CT---T---AC-A-ATGGCCCAT-AAG-TATTC----------------------------AAAATT-TT---AAATTACT------TA-ATTTTT-T--AACCA-CC-A-TGGC-AAC--T---AA-ATG-AATAACATT-A-TCCTTA-A-----G-TTTT--CT--AAATATAA-GAA-T---AAAAATTGC------T--TAGAATTAAAAT-TTAG--TATAAACAT----ATTT-TATGTT-TG-T-CGT-GGCAACATAA-TGATT-AGAT-C----AATTCCTTCT-AAA---TTTGATT--AACCTTTTC-TTCCCAT---GAAA--TAGG-----GT--AAATTTGTGC--------AAT-A-AAC-GATGTGCA--------AT------AT--GTATGCAGGT-TT-CAGTAATGATTT-AA-TTTCTTA--G-GATGTTGGAA-GT---AAAGTCAC-AGAAAA---A--AAAAGT-C-AC-GG-ATAGGAAATCACAGG----AA-AAAGGC--AC-ACCAT---AT-TAAA--------TATTTT-AAAAATG-TT-ACA-GTAGTACTAG----G-ACA---GAAAGTCAC-TGT---AAAAA-----A-GT-CAAACTG-TATGTG-T-ACATTTTTATA-TGTACATGT-ATAT-TTATTATC-CGGGGg
gi|7 : TA---TTTATACAGATATACAAA----GTATACATT-TATATA---A--TATTGGAT--GT-TATTT------T---CA-ATAGA-----TATGCACATG-TTTTGAA----ATACCAAGT-GCG-C-AT-GTTTTA--T-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTT--CT-TC-A----------TACAA-TAG----------------TCT-ACCGGTATA-------------------A-GTATTCAAA-AAG-GATTTTTAAAAAAG--------------TTT-------T-T------GCTATT------TA-ATTTTCAT--AATTG-CC-A-TGAC-AAC--T---AA-ATG-AATCACATTAT-TCCAA--A-----G-TTTT--CT--TAATAT-AGGAA-T---GCAAAGTGTTTAAAAT--TAG------AAT-ATAG--TATAAACAT----ATTT-TGTATT-TG-C-CGT-GGCAACATAA-TAATT-ATAT-C----AATCCCTCCT-AAA---ACT-ATTTCAACCTTTTC-TTCCCAT---GAAA--TAGG-----GG--AAAACTGTCCAATAA---AGT-ATGATCAATTTGTA--------TT------ACTAGTATACTGGT-TT-CAGTAATACTGT-TA-TTTa
gi|8 : gaatcacttgGGG-TA-T-CG--TTACCATGGCA-C---GTAA--TAACCC--AACACAATCATAAA--TGTGTT-------CGT-GCATTTTGTCACAT---AT-A-C-AC-CA-A-AT-GATG-ACCT-AC-A--TCATCATT---AATC-AATTTT-GG--TCAGT-------TGTATTTA----------------T-------CATTATA-----------------GA--------G--CATA---CTTATGCA-A-ATATGGATGCTATACATAGTATATATA---AAATAT---A----T-TA---------G----ATATAGA-----TA--CACATACTTT-GAA----GTACTAAGAAGCGGC-TT-GTTATA--C-TT--ACTGTCATT-AC--ATT-T--TC--------CTT----T--TTTTTTTCCTATG-AAAA-ACGATATAGAA-TAGATTT---GATGAACATTCT-CCTGGTACA--TTTG-CAG--T---AC-A-A--GTCTAT-------TTCTAAAACA----------------TTTA-CAAt
gi|9 : TTCAAGTTTTCCTT-----------------T-AAAACTT-GAAATAAAAAA---TAAGGCATT-TTCT----AATAATAGTTTTA--T---AAA-GTAAC--CAAT-AT---AC-ATTT--T-AAA---AGG--AAACATGTTG-AAGA--TT-ATAA--TCATGTAA-TGAAATAT-----GGGT-TA-A-AGG-TTACCATGGGAAG---GGAA--TAA-CCC-AACA-AATCATAAAAATGTGTTTT----TCATGGAATTTT---ACATAT-AA-AAC-ACACA-A-ATTGATG-GCTTTAA-AG-TCATCA-TTTGAATG-GATTTT-AGGATC-------ACTTGTATTT--------AT-A-----TAAA---ATATTACAA-CC--ATAC--ATATgcaatcagtcgataccataaattgctgttttatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTCGGAAGAGAAGAGGTCACAGCGAAAAAGTCAGAATGTTATA
Unaligned ( gi|22 ): TCATACATGCATGCATATTTCCCGGTGGGAG
Alignments
lowQualScore : 1 2222 222 1111 22222222222 1111111 111 1111111111 11 11 11 11 22222 11 111 11 1111 222 111 11111 333333333 66666666666666666 111 222222 44444444444 111 111111 111111 55555555555555555555555555 11111 1 1 2222222222222222222222 11 222222222 22222222222222 111111 3333 444444444444444 111 11111 111111111 111111 22 1111 111111 1 111 222 222222222 1 222 111 33333333333333333333 111 2222222222222 11 333333333333333333333 1111 1111 111 111 111
lowQualScore : 0 1111 1 1 444 5 3 99 6 4444 6 44444444444 5555555 444 8 6666666666 11 8 11 8 11 11 0 8 99999 6 888 33 111 99 1 44 6 2 4444 6 1 888 77 5 000 88 77777 33333 77 5 888888888 22222222222222222 1 111 3 222222 99 0 55555555555 444 8 8 2 66 555555 1 2 1 4 999999 55555555555555555555555555 0 22222 66 2 9999 55 4 4 8 9999 4 1 0 66 4 3333333333333333333333 00 8 4 4 8 4 1 5 1 777 66 4 99 111111111 4 4 4 4 4 44 99999999999999 5 777 5 888 444444 55 0000 5 5 5 5 66 888 5 5 666666666666666 111 99 99 9 33333 999999999 999999 00 99 1 9999 6 6 666 6 6 6 555555 1 3 111 6 0 6 000 99 777777777 0 111 0 222 55 44444444444444444444 6 6 6 6 77 5 5 000 1111111111111 66 5 5 5 00 0 2 55 44 4 1 66 4 66 777777777777777777777 8888 5 6 2222 5 5 1111 1 5 000 222 6 6 6 222 6 777 6 6
lowQualScore : . .... . . ... . . .. . .... . ........... ....... ... . .......... .. . .. . .. .. . . ..... . ... .. ... .. . .. . . .... . . ... .. . ... .. ..... ..... .. . ......... ................. . ... . ...... .. . ........... ... . . . .. ...... . . . . ...... .......................... . ..... .. . .... .. . . . .... . . . .. . ...................... .. . . . . . . . . ... .. . .. ......... . . . . . .. .............. . ... . ... ...... .. .... . . . . .. ... . . ............... ... .. .. . ..... ......... ...... .. .. . .... . . ... . . . ...... . . ... . . . ... .. ......... . ... . ... .. .................... . . . . .. . . ... ............. .. . . . .. . . .. .. . . .. . .. ..................... .... . . .... . . .... . . ... ... . . . ... . ... . .
lowQualScore : 8 4444 4 4 444 7 2 22 7 2222 7 99999999999 8888888 000 0 4444444444 00 0 00 0 00 44 8 0 66666 7 777 33 777 22 0 00 7 5 2222 7 0 888 44 7 444 00 66666 77777 11 7 999999999 33333333333333333 0 777 5 333333 88 6 00000000000 000 6 0 8 22 111111 3 1 0 5 888888 11111111111111111111111111 1 55555 99 8 4444 44 4 4 9 7777 4 9 0 11 4 6666666666666666666666 66 9 4 4 9 4 9 4 8 888 11 0 55 000000000 4 4 4 4 4 66 44444444444444 0 222 0 888 444444 88 2222 0 0 0 0 99 888 0 7 777777777777777 777 22 22 3 33333 333333333 222222 22 22 0 0000 7 7 888 7 7 7 000000 7 3 777 7 3 7 000 22 222222222 8 777 3 555 88 00000000000000000000 7 7 7 7 99 7 7 000 1111111111111 99 0 0 0 66 1 2 99 00 4 8 11 4 99 222222222222222222222 3333 7 7 1111 7 7 0000 9 7 000 888 7 7 7 555 7 555 7 7
consensus : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACA-T-TAT-AAC-ACACA-A-ATTGATG-ACTTTA-CAA-TCATCATTTTAAATC-GA-TTTTAGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATAC-GTACATANTATATATA---AGATAT---ACG--T-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTTCCA--T---AC-A-ATGGTCTAT-AAG-TA-TTC-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
Reference ( family-1086 ) : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACA-T-TAT-AAC-ACACA-A-ATTGATG-ACTTTA-CAA-TCATCATTTTAAATC-GA-TTTTAGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATAC-GTACATANTATATATA---AGATAT---ACG--T-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTTCCA--T---AC-A-ATGGTCTAT-AAG-TA-TTC-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
gi|1 : TTCAAGTTTTCCTTGAAAACTAAC-AATGA-T-ACAATTTTCAAATAAAAAAATAGATGGCATT-TTCTTCTAAGTAATA-TGA---T---AACTGTAACACCCAT-AT---ATTATTTCATGAAAGGAAGG--GAAAATGTTG-AAGACATTGATAAATCCATGTA-CTGAAA-ATT---GGGGGGTAGA-CG--TTACCATGGCAACCACGTAAAATAACCCC-A-CA-AATCATAAAAATGT---TT----TCGT-GCATTTTGTCACA-T--ATCAAC-ACACA-ACATTG-TG-ACTTTA-CAA-TCATCATT--AAATCCAA-TTTTAGGATCAGT------TTGTATTTATAC----AT-AGGTAATACA---GCAT-ACAGATT--ATGC-AATATGGA------TTG--GCTA---TTTACAAA-ATATATAGATAC-G---ATAATATA--------GATAT-----------------------------TAGA-----TA--CACATACTTT-GAAAGTAGTACTAAG-AAC-GC-ATCGTTATA--C-TT--ACTGTCATTTAC--ATT-T--TC--------TTTCTTGT--TTTCCT--CT-TGAAAAA-AAGAT-TAAAAGTAGAA-T---GA--AACATTCTCCCTGGTACA--TTTT-CA--TTAAAC-A-ATGGTCTATAAAG-TA-TTC-AAAAAAGG--------------TT-T-ACAAACGTATT---AAATTATT------TT-ATTTTT-TATAATTA-CC-A-CGAC-AAC--T----A-GTG-AATCAC-TT-TATCCATT---AACGTTTTT--CTTAGAATATAA-GAA-TTAAAAAAAGTGT------TTATAG------AATCGTAG--TATAAACCTA---TGGT-TATGTT-TG-TCCGTGGGCAACATTA-TAA-T-ACAT-A----AAT--CTTCT-TAATTTACT-ATTTCAGTCTTTTC-T--CCATGGAGAAA--TAGGGGGAAGG-AAAAACTGT-CAAT-ATTTAATAA-AACTAATGTGCA--------ATTGATACAT--G-ATACAGGT-TT-C-GTAATGATCTGAA-TTTCTTAAGG-GATGTAGGAAGAG---AAGGGT-C-A-AAGGGAAA--AAAAGT-CAAC-GCAATAGGAAGTCACAGGGAAAAATAAAGTC--AC-A--AT---ATATTAATG-CATG--A-TTT-TCAAATT-CTGACATATACTAATAGGATCG-A-A---TAATGTCAC-TGTATAAAAAAAA--TA-GT-CAAACTG-TATGTG---ACATTTT--TG-TGT-CATGTCGTAT-TTATTTTC-CGGG
gi|10 : taaccctttagactaccaaaagaatTTCAAGTTTTCCTTCAAAA----CTGATGACA-AAAATTT-CTAATAAAAAA-TAA--GGCATT-TTCT----AGTAATG-TTT---TTATAAT-GTAGC--CCA-CAT---AT-ATCC--T-------------AAAATGTTG-AAGA--TT-ATAA--TTATGTA-CTGAAA-AT-----GGGG-TA-A-CGG-TTATCATGGCAAC---GAAA--TAATCCC--ACA-GGTCATAAAAAT-TTTTTT----TCGT-GCATTTTATCACA---TA--AAC-ACACA-T-ATGGATG-GTTTTA--GA-TAACCATTTC-AATA-GA-TTTTAGGATC-------ACTTGTAT
gi|11 : gccctttaactacctgaaaatACAATATATATATTTAGATAT---ACA--TGTATAT------A---GATATAGA-----TA--CACATACTTT-AAA----GTACTAAG-TGC-GC-AT-GCTATA--C-TT-TAC---------------------------------------TTTTTC--CT-TG-AAAA-AAGAT-TAAAA-T-TGATT---GA--AACATTCT-CCTGGTACA--TTTTC
gi|12 : tatttAT-AAG-ACACA-A-ATTGATG-ACTTTA-CAG-TCATCA-TTTGAATC-AA-TTTTAGGATCACTTGACACTAGTATTTATACATTTAT-A-----TACA---ACA-TACAT-TTAAATGC-AATTTTG
gi|13 : TCT-CCTGGTACA--TTTTC-A--T---GC-A-ATGGTCTAC-AAG-TA-TTC-AAAAAGGT--------------TT-T-T-AAAAGT-TT---AAATTACTAGTATCTA-ATTTTTAT--AATTA-CC-A-TGGC-AAC--T---AA-gacgcaaaat
gi|14 : --G-GGTGTAGGAA-AG---AAAGT--C-A-CAGG---AACAAAAGT-C-AC-A--AGAAAAAGCCAC-GGGGAAAA-AAAGT----C-A--AT-----------------------------ATT-CTGACA-GTACTACTAA----G-A-A---A---GTCAA-TGT---AA
gi|15 : TA--G-GGTGTAGGAA-AT---AAAGTC-A-C-AGGG---A--AAAAATCC-AC-GG-ATAAAGAGTCACA--GGAAAG-AAAG-C--AC-A--AT---GT----AT----TA-TTTTTT-TAAAATT-
gi|16 : G----A-A-A---GAAAGTCAC-TGT---AAAAAAA--AAAGT-CAAACTG-TGTGTG-T-ACATTTTTCTA-TGTACATGT-A-----TATTCTC-CCGGGG
gi|17 : agTTCAAATTTTCCTT-CAAA---GCTGATGAC--AAAATTT-CAAaa
gi|18 : caaccctttagctaccagaaaat---ACTAATGAC--AAAATTT-CAAATAAAAAAATGA--AGCATT-TTCT----AGTAATA-TTT---T---A
gi|19 : AGTCACA-GGGAAAA-AAAGTC--AC-tataat
gi|2 : TTCAAGTTTTCCTTGAAAA---ACTAA-GATTTAAAATTT-CAAATAAAAA--TAA--GGCATTGTTCT----AGTAATA-TTT---T---AA--GTAAC--CCATTAT---AT-ATTC--CGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--CCATGAAACTGAAA-CTTTTGGGGGG-TA-A-CGGCTTACCATGGCAAC---GTAA--TAACCCCTAACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACATT-TAT-AAC-ACACATG-ATTGATG--CTTTACCAA-TCATCATTTTAAATC-AATTTTTAGGATCAGT----AGTTGTATTT---------TCG-----TACA---ACATTACAT-TT--ATGCTAGTATTGA-------TG--CCTA---TTNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNC--AGATAT---ACA--T-TACAT------G---TATATAAT-----TA--CACATACTTTTGAA----GTACTAAG-AGC-AC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TT--------CTTGG--T--TTTTTT--CTGTG-AAAA-AAGAT-TAAAA-TAGGATTTGAAA--AACATT-T-CCTGGGACAT-TTTTCCA--T----C-A-ATGGTCTAT-AAG-TA-TTTAAAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATC-----------------AG---TTTT--CT--AAATATAAAGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAACCTTA---ATGT-TATG-T-TG-T-CGT-GGCAACACAATTAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTT-CTTCCATG--GAAA--TAGG-----GGAAAAAACTGT-CAATAATTTAAT-A-AACT-ATGTGCA--------AT------AT--GTATACAGTT-TT-GAGTAATGATCT-AATTTTCTTA--G-GATGTAGGAA-AG---AAAGTC-CGA-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTTCAAC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTG-CA-GTACTAATAG----G-A-A---TAATGTCACATGT---AAAAAAA--TA-GT-CAAA-TGTTATGTG-TAACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGGggaaaaaagtcactggaaaaaaggcacaacatat
gi|20 : AGTCAC-A-GGGA---A--AAAAGT-C-AC-GG-A-AAAAAGTCACTGG---AAA-AAAGGC--AC-A--AC---AT-
gi|3 : TTCAAGTTTTCCTTGAAAAT--GCTAATGAC--AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTTTTAT---AAT-GTAAC--C--TCATATAAT-ATTC--TGAAA---AGGCAAAAAATGTTGAAAGA--TT-ATAA--TCATGT-ACTG-AA-ATT---TGGGG-TA-AGCGG-TTACCATGGCAAC---GTAA--T-ACCCC--ACA-AATCAATAAAATGTGTTTTTTTGTTGT-GCATTTTGTCACA---TAT-AACAACACA-G-ATTGATGAACTTTA-CAACTCATCA-TTTAAATC-AA-TTTTAGGCCTAG-------TTGTATTTA-------AC-A-----TATATACACATAACAT-GT--ATGC-AATATTGGGAAAATTTGCCCCTATTTTTTA-GCA-ATATAT--ATAC---ATATACTATATATA---AGat
gi|3 : accttttaacatacacagaaaaTTTTGAA----GTACTCAG-TGC-GCCAT-GTTATAACT-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTTC-CT-TG-AAAA-AAGAT-TAAAA-T--GATT---GA--AACATTCT-CCTGGTACA--TTTTTCA--TG--AC-A-ATGGTCC-T-AAG-TATTTC-AAAAAAGGTTTTGGGTTTTTTTTT-T-A-AAAAGT-TT---AAATAACT------TT-ATTTTTAT--AATTA-CCGA-TGACAAAC--TAAGAA-GTG-AATCAC-TT-T-taggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgaagtactcagtgcgccatgttataacttttactgtcattacattttcttttttttttccttgaaaaaagattaaaatgattgaaacattctcctggtacatttttcatgacaatggtcctaagtatttcaaaaaaggttttgggttttttttttaaaaagtttaaataactttatttttataattaccgatgacaaactaagaagtgaatcactttat
gi|4 : accttttaacatacacagaaaattcaagttttccttgaaaatgctaatgacaaaatttcaaataaaaaaataaggcattttctagtaatatttttataatgtaacctcatataatattctgaaaaggcaaaaaatgttgaaagattataatcatgtactgaaatttggggtaagcggttaccatggcaacgtaataccccacaaatcaataaaatgtgtttttttgttgtgcattttgtcacatataacaacacagattgatgaactttacaactcatcatttaaatcaattttaggcctagttgtatttaacatatatacacataacatgtatgcaatattgggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTACA--ATATATAT-------CAT---ACGAAT-TATAC----------TATAT--------------CATACTTT-GAA----GTACTAAG-TGT-GC-ATAGTTATA--C-TTGTACTGTCATTTAC--ATTAT--TC--------ATT----TCCTTGTTC--CT-TG-AAAAGAAGATATAAAA-TAGCATT---GA--AACATTCT-CCTGCTACA--TTTTCTAACT---AC-AGATGG-CTAT-AAGTTA-TTC-CAAAAAGG--------------TTCT-A-AAAAGT-TTATGAAGTTACT------TTCATTTTT-T---ATTACCC-ACTGCA-AACCGT---AACGTGAAATCAC-TT-T-CCT--TA--AG---TTTTTCTT--AAATATAAGAAATT---AAAAAGTGT------T--TAG------AAT--TAGAATGTAAGTATACCTATGCGTATGTT-TGTT-CG--AGCAACATTA-TAATTCACAT-C----AATTCCTTCTAAAA---ACT-ATTTCAGACTTTTC-TTCGCATT--GAAATTTAGG-----GG-AAAAACTGTCCAAT-ATTTATC----ACTGATGTGCATGTGTAGTAC------AT--GTA-GCAGGTGTTGCAGTAATGATC--GA-TTTCTTA--G-GATGTA-GAA-AG---AAAGT--C-A-AAGGGA-A--AAAAGT-C-ACGGC-ATAGGAAGTCTCAGGG---AA-AAAGTC--ACTA--AT---AT-TTAA-G-CATGTTATTTTATT--ATTACTGACA-GTACTAATAG----G-A-ACAGAAATGTCAC-TAA---AAAAAAG--AA-GT-CAAACTG-TATGTGTT-ACATTTTTCTACTGTACATGT-A-AT-TTGTTTTCTCCGGGGat
gi|5 : tgtaATGT---ATA--T-TATATACAGAAG---TATATAGAACATGTA--TACATAATTTTGAA----GTACTAAG-AGC-GG-A--GTTATA--CCTT-TACTGTCATT-ACTGATT-TGGTC--------TTT----T--TTTTTC--CT-TG-AAAA-AAGAT--AAAA-TAGAAGT---GA--AACAT-CT-CCTGGTACAGATTTTCAA--T---ACGA-ATGGTCTAT-AAG-TA-TCA-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTCTTA-TATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-TATCC--TTAAAG---TTTT--CT--AAATCTAAGAA------AAAAAGTGT------T--TAG------AAT--TAG--TACAAACCTA---ATGT-TATATTGTG-T-CGT-GGCAACATAA-TAATT-ACATGCATCAAATTCCTTCTAAAA---ACT-ATTTCAGTCTCTTCTTTCCCATG--GAAA--TATG-----G---AAAACTGTCCAATA--TTAGT-A-AACTAATGTGCA--------AT------A---GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--GTGATGTAGGAA-AGTTAAAAGGC-------GA---A--AAAAGT-C-AC-GC-ATA-GAAGTCA---AGGAGAA-AAAGTC--AC-A--ATATAAT-TAAATGCCATG-TA-TTT-TCAAATT-CTGACA-GTAC-AATAG----GAA-A---TAATGTCAC-TGT---AAAAAAAATTA-GTCCAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATATCTTATTTTC-CCGGGGt
gi|6 : ATATT-TATATA---A--TATTGAATG--T-TATTT------ACAATATATAAA-----TA--CA--TACTTT-GAA----GTACTAAG-AGT-GC-AT-GCCATA-----T-TAC----ATTT-----TT-TAATCGAGGCAGGCTT----C--ATTTTA--CT-TA-AAAC-AAAAA-TCAAA-TAAAATT---AA--AACATTCT-TCTGGTACA--TCTTCT---T---AC-A-ATGGCCCAT-AAG-TA-TTC-AAAA------------------T-----------T-TT---AAATTACT------TA-ATTTTT-T--AACCA-CC-A-TGGC-AAC--T---AA-ATG-AATAACATT-A-TCC--TTA-AG---TTTT--CT--AAATATAA-GAA-T---AAAAATTGC------T--TAGAATTAAAAT-TTAG--TATAAACAT----ATTT-TATGTT-TG-T-CGT-GGCAACATAA-TGATT-AGAT-C----AATTCCTTCT-AAA---TTTGATT--AACCTTTTC-TTCCCAT---GAAA--TAGG-----GT--AAATTTGTGC--------AAT-A-AAC-GATGTGCA--------AT------AT--GTATGCAGGT-TT-CAGTAATGATTT-AA-TTTCTTA--G-GATGTTGGAA-GT---AAAGTCAC-AGAAAA---A--AAAAGT-C-AC-GG-ATAGGAAATCACAGG----AA-AAAGGC--AC-ACCAT---AT-TAAA--------TATTTT-AAAAATG-TT-ACA-GTAGTACTAG----G-ACA---GAAAGTCAC-TGT---AAAAA-----A-GT-CAAACTG-TATGTG-T-ACATTTTTATA-TGTACATGT-ATAT-TTATTATC-CGGGGg
gi|7 : TA---TTTATACAGATATACAAA----GTATACATT-TATATA---A--TATTGGATG--T-TATTT------T---CA-ATAGA-----TATGCACATG-TTTTGAA----ATACCAAG-TGC-GC-AT-GTTTTA--T-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTT--CT-TC-A----------TACAA-TAG----------------TCT-ACCGGTATA------------------A-GTATTCAAA-AAG-GA-TT------------------------TT-TAA-AAAAGT-TT---TTGCTATT------TA-ATTTTCAT--AATTG-CC-A-TGAC-AAC--T---AA-ATG-AATCACATTAT-TCCA-A---AG---TTTT--CT--TAATAT-AGGAA-T---GCAAAGTGTTTAAAAT--TAG------AAT-ATAG--TATAAACAT----ATTT-TGTATT-TG-C-CGT-GGCAACATAA-TAATT-ATAT-C----AATCCCTCCT-AAA---ACT-ATTTCAACCTTTTC-TTCCCAT---GAAA--TAGG-----GG--AAAACTGTCCAATAA---AGT-ATGATCAATTTGTA--------TT------ACTAGTATACTGGT-TT-CAGTAATACTGT-TA-TTTa
gi|8 : gaatcacttgGGG-TA-T-CG--TTACCATGGCA-C---GTAA--TAACCC--AACACAATCATAAA--TGTGTT-------CGT-GCATTTTGTCACA---TAT--AC-AC-CA-A-A-TGATG-AC-CTA-C-A-TCATCATT---AATC-AA-TTTT--GGTCAG-------TTGTATTT--------AT---------------CATTATA-----------------GA--------G--CATA---CTTATGCA-A-ATATGGATGCTATACATAGTATATATA---AAATAT---A----T-TA---------G----ATATAGA-----TA--CACATAC-TTTGAA----GTACTAAGAAGCGGC-TT-GTTATA--C--T-TACTGTCA-TTAC--ATT-T--TC--------CTT----T--TTTTTTTCCTATG-AAAA-ACGATATAGAA-TAGATTT---GATGAACATTCT-CCTGGTACA--TTTGCAG--T---AC-A-A--GTCTAT--------TTC-TAAAAt
gi|9 : TTCAAGTTTTCCTT-----------------T-AAAACTT-GAAAT-AAAAAATAA--GGCATT-TTCT----AATAATAGTTTTA-T---AAA-GTAAC--CAAT-AT---AC-ATTT--T-AAA---AGG--AAACATGTTG-AAGA--TT-ATAA--TCATGTAA-TGAAATAT-----GGGT-TA-A-AGG-TTACCATGGGAAG---GGAA--TAA-CCC-AACA-AATCATAAAAATGTGTTTT----TCATGGAATTTT---ACA-TATAA-AAC-ACACA-A-ATTGATG-GCTTTA-AAG-TCATCA-TTTGAATG-GA-TTTTAGGATC-------ACTTGTATTT--------AT-A-----TAAA---ATATTACAA-CC--ATAC--ATATcatttacaagcaatcagtcgataccataaattgctgttttatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTCGGAAGAGAAGAGGTCACAGCGAAAAAGTCAGAATGTTATA
Unaligned ( gi|22 ): TCATACATGCATGCATATTTCCCGGTGGGAG
Alignments
lowQualScore : 1 2222 222 1111 22222222222 1111111 111 1111111111 11 11 11 11 22222 11 111 11 1111 222 111 11111 333333333 66666666666666666 111 222222 44444444444 111 111111 111111 55555555555555555555555555 11111 1 1 2222222222222222222222 11 222222222 22222222222222 111111 3333 444444444444444 111 11111 111111111 111111 22 1111 111111 1 111 222 222222222 1 222 111 33333333333333333333 111 2222222222222 11 333333333333333333333 1111 1111 111 111 111
lowQualScore : 0 1111 1 1 444 5 3 99 6 4444 6 44444444444 5555555 444 8 6666666666 11 8 11 8 11 11 0 8 99999 6 888 33 111 99 1 44 6 2 4444 6 1 888 77 5 000 88 77777 33333 77 5 888888888 22222222222222222 1 111 3 222222 99 0 55555555555 444 8 8 2 66 555555 1 2 1 4 999999 55555555555555555555555555 0 22222 66 2 9999 55 4 4 8 9999 4 1 0 66 4 3333333333333333333333 00 8 4 4 8 4 1 5 1 777 66 4 99 111111111 4 4 4 4 4 44 99999999999999 5 777 5 888 444444 55 0000 5 5 5 5 66 888 5 5 666666666666666 111 99 99 9 33333 999999999 999999 00 99 1 9999 6 6 666 6 6 6 555555 1 3 111 6 0 6 000 99 777777777 0 111 0 222 55 44444444444444444444 6 6 6 6 77 5 5 000 1111111111111 66 5 5 5 00 0 2 55 44 4 1 66 4 66 777777777777777777777 8888 5 6 2222 5 5 1111 1 5 000 222 6 6 6 222 6 777 6 6
lowQualScore : . .... . . ... . . .. . .... . ........... ....... ... . .......... .. . .. . .. .. . . ..... . ... .. ... .. . .. . . .... . . ... .. . ... .. ..... ..... .. . ......... ................. . ... . ...... .. . ........... ... . . . .. ...... . . . . ...... .......................... . ..... .. . .... .. . . . .... . . . .. . ...................... .. . . . . . . . . ... .. . .. ......... . . . . . .. .............. . ... . ... ...... .. .... . . . . .. ... . . ............... ... .. .. . ..... ......... ...... .. .. . .... . . ... . . . ...... . . ... . . . ... .. ......... . ... . ... .. .................... . . . . .. . . ... ............. .. . . . .. . . .. .. . . .. . .. ..................... .... . . .... . . .... . . ... ... . . . ... . ... . .
lowQualScore : 8 4444 4 4 444 7 2 22 7 2222 7 99999999999 8888888 000 0 4444444444 00 0 00 0 00 44 8 0 66666 7 777 33 777 22 0 00 7 5 2222 7 0 888 44 7 444 00 66666 77777 11 7 999999999 33333333333333333 0 777 5 333333 88 6 00000000000 000 6 0 8 22 111111 3 1 0 5 888888 11111111111111111111111111 1 55555 99 8 4444 44 4 4 9 7777 4 9 0 11 4 6666666666666666666666 66 9 4 4 9 4 9 4 8 888 11 0 55 000000000 4 4 4 4 4 66 44444444444444 0 222 0 888 444444 88 2222 0 0 0 0 99 888 0 7 777777777777777 777 22 22 3 33333 333333333 222222 22 22 0 0000 7 7 888 7 7 7 000000 7 3 777 7 3 7 000 22 222222222 8 777 3 555 88 00000000000000000000 7 7 7 7 99 7 7 000 1111111111111 99 0 0 0 66 1 2 99 00 4 8 11 4 99 222222222222222222222 3333 7 7 1111 7 7 0000 9 7 000 888 7 7 7 555 7 555 7 7
consensus : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACA-T-TAT-AAC-ACACA-A-ATTGATG-ACTTTA-CAA-TCATCATTTTAAATC-GA-TTTTAGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATAC-GTACATANTATATATA---AGATAT---ACG--T-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTTCCA--T---AC-A-ATGGTCTAT-AAG-TA-TTC-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
Reference ( family-1086 ) : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACA-T-TAT-AAC-ACACA-A-ATTGATG-ACTTTA-CAA-TCATCATTTTAAATC-GA-TTTTAGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATAC-GTACATANTATATATA---AGATAT---ACG--T-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTTCCA--T---AC-A-ATGGTCTAT-AAG-TA-TTC-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
gi|1 : TTCAAGTTTTCCTTGAAAACTAAC-AATGA-T-ACAATTTTCAAATAAAAAAATAGATGGCATT-TTCTTCTAAGTAATA-TGA---T---AACTGTAACACCCAT-AT---ATTATTTCATGAAAGGAAGG--GAAAATGTTG-AAGACATTGATAAATCCATGTA-CTGAAA-ATT---GGGGGGTAGA-CG--TTACCATGGCAACCACGTAAAATAACCCC-A-CA-AATCATAAAAATGT---TT----TCGT-GCATTTTGTCACA-T--ATCAAC-ACACA-ACATTG-TG-ACTTTA-CAA-TCATCATT--AAATCCAA-TTTTAGGATCAGT------TTGTATTTATAC----AT-AGGTAATACA---GCAT-ACAGATT--ATGC-AATATGGA------TTG--GCTA---TTTACAAA-ATATATAGATAC-G---ATAATATA--------GATAT-----------------------------TAGA-----TA--CACATACTTT-GAAAGTAGTACTAAG-AAC-GC-ATCGTTATA--C-TT--ACTGTCATTTAC--ATT-T--TC--------TTTCTTGT--TTTCCT--CT-TGAAAAA-AAGAT-TAAAAGTAGAA-T---GA--AACATTCTCCCTGGTACA--TTTT-CA--TTAAAC-A-ATGGTCTATAAAG-TA-TTC-AAAAAAGG--------------TT-T-ACAAACGTATT---AAATTATT------TT-ATTTTT-TATAATTA-CC-A-CGAC-AAC--T----A-GTG-AATCAC-TT-TATCCATT---AACGTTTTT--CTTAGAATATAA-GAA-TTAAAAAAAGTGT------TTATAG------AATCGTAG--TATAAACCTA---TGGT-TATGTT-TG-TCCGTGGGCAACATTA-TAA-T-ACAT-A----AAT--CTTCT-TAATTTACT-ATTTCAGTCTTTTC-T--CCATGGAGAAA--TAGGGGGAAGG-AAAAACTGT-CAAT-ATTTAATAA-AACTAATGTGCA--------ATTGATACAT--G-ATACAGGT-TT-C-GTAATGATCTGAA-TTTCTTAAGG-GATGTAGGAAGAG---AAGGGT-C-A-AAGGGAAA--AAAAGT-CAAC-GCAATAGGAAGTCACAGGGAAAAATAAAGTC--AC-A--AT---ATATTAATG-CATG--A-TTT-TCAAATT-CTGACATATACTAATAGGATCG-A-A---TAATGTCAC-TGTATAAAAAAAA--TA-GT-CAAACTG-TATGTG---ACATTTT--TG-TGT-CATGTCGTAT-TTATTTTC-CGGG
gi|10 : taaccctttagactaccaaaagaatTTCAAGTTTTCCTTCAAAA----CTGATGACA-AAAATTT-CTAATAAAAAA-TAA--GGCATT-TTCT----AGTAATG-TTT---TTATAAT-GTAGC--CCA-CAT---AT-ATCC--T-------------AAAATGTTG-AAGA--TT-ATAA--TTATGTA-CTGAAA-AT-----GGGG-TA-A-CGG-TTATCATGGCAAC---GAAA--TAATCCC--ACA-GGTCATAAAAAT-TTTTTT----TCGT-GCATTTTATCACA---TA--AAC-ACACA-T-ATGGATG-GTTTTA--GA-TAACCATTTC-AATA-GA-TTTTAGGATC-------ACTTGTAT
gi|11 : gccctttaactacctgaaaatACAATATATATATTTAGATAT---ACA--TGTATAT------A---GATATAGA-----TA--CACATACTTT-AAA----GTACTAAG-TGC-GC-AT-GCTATA--C-TT-TAC---------------------------------------TTTTTC--CT-TG-AAAA-AAGAT-TAAAA-T-TGATT---GA--AACATTCT-CCTGGTACA--TTTTC
gi|12 : tatttAT-AAG-ACACA-A-ATTGATG-ACTTTA-CAG-TCATCA-TTTGAATC-AA-TTTTAGGATCACTTGACACTAGTATTTATACATTTAT-A-----TACA---ACA-TACAT-TTAAATGC-AATTTTG
gi|13 : TCT-CCTGGTACA--TTTTC-A--T---GC-A-ATGGTCTAC-AAG-TA-TTC-AAAAAGGT--------------TT-T-T-AAAAGT-TT---AAATTACTAGTATCTA-ATTTTTAT--AATTA-CC-A-TGGC-AAC--T---AA-gacgcaaaat
gi|14 : --G-GGTGTAGGAA-AG---AAAGT--C-A-CAGG---AACAAAAGT-C-AC-A--AGAAAAAGCCAC-GGGGAAAA-AAAGT----C-A--AT-----------------------------ATT-CTGACA-GTACTACTAA----G-A-A---A---GTCAA-TGT---AA
gi|15 : TA--G-GGTGTAGGAA-AT---AAAGTC-A-C-AGGG---A--AAAAATCC-AC-GG-ATAAAGAGTCACA--GGAAAG-AAAG-C--AC-A--AT---GT----AT----TA-TTTTTT-TAAAATT-
gi|16 : G----A-A-A---GAAAGTCAC-TGT---AAAAAAA--AAAGT-CAAACTG-TGTGTG-T-ACATTTTTCTA-TGTACATGT-A-----TATTCTC-CCGGGG
gi|17 : agTTCAAATTTTCCTT-CAAA---GCTGATGAC--AAAATTT-CAAaa
gi|18 : caaccctttagctaccagaaaat---ACTAATGAC--AAAATTT-CAAATAAAAAAATGA--AGCATT-TTCT----AGTAATA-TTT---T---A
gi|19 : AGTCACA-GGGAAAA-AAAGTC--AC-tataat
gi|2 : TTCAAGTTTTCCTTGAAAA---ACTAA-GATTTAAAATTT-CAAATAAAAA--TAA--GGCATTGTTCT----AGTAATA-TTT---T---AA--GTAAC--CCATTAT---AT-ATTC--CGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--CCATGAAACTGAAA-CTTTTGGGGGG-TA-A-CGGCTTACCATGGCAAC---GTAA--TAACCCCTAACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACATT-TAT-AAC-ACACATG-ATTGATG--CTTTACCAA-TCATCATTTTAAATC-AATTTTTAGGATCAGT----AGTTGTATTT---------TCG-----TACA---ACATTACAT-TT--ATGCTAGTATTGA-------TG--CCTA---TTNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNC--AGATAT---ACA--T-TACAT------G---TATATAAT-----TA--CACATACTTTTGAA----GTACTAAG-AGC-AC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TT--------CTTGG--T--TTTTTT--CTGTG-AAAA-AAGAT-TAAAA-TAGGATTTGAAA--AACATT-T-CCTGGGACAT-TTTTCCA--T----C-A-ATGGTCTAT-AAG-TA-TTTAAAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATC-----------------AG---TTTT--CT--AAATATAAAGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAACCTTA---ATGT-TATG-T-TG-T-CGT-GGCAACACAATTAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTT-CTTCCATG--GAAA--TAGG-----GGAAAAAACTGT-CAATAATTTAAT-A-AACT-ATGTGCA--------AT------AT--GTATACAGTT-TT-GAGTAATGATCT-AATTTTCTTA--G-GATGTAGGAA-AG---AAAGTC-CGA-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTTCAAC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTG-CA-GTACTAATAG----G-A-A---TAATGTCACATGT---AAAAAAA--TA-GT-CAAA-TGTTATGTG-TAACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGGggaaaaaagtcactggaaaaaaggcacaacatat
gi|20 : AGTCAC-A-GGGA---A--AAAAGT-C-AC-GG-A-AAAAAGTCACTGG---AAA-AAAGGC--AC-A--AC---AT-
gi|3 : TTCAAGTTTTCCTTGAAAAT--GCTAATGAC--AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTTTTAT---AAT-GTAAC--C--TCATATAAT-ATTC--TGAAA---AGGCAAAAAATGTTGAAAGA--TT-ATAA--TCATGT-ACTG-AA-ATT---TGGGG-TA-AGCGG-TTACCATGGCAAC---GTAA--T-ACCCC--ACA-AATCAATAAAATGTGTTTTTTTGTTGT-GCATTTTGTCACA---TAT-AACAACACA-G-ATTGATGAACTTTA-CAACTCATCA-TTTAAATC-AA-TTTTAGGCCTAG-------TTGTATTTA-------AC-A-----TATATACACATAACAT-GT--ATGC-AATATTGGGAAAATTTGCCCCTATTTTTTA-GCA-ATATAT--ATAC---ATATACTATATATA---AGat
gi|3 : accttttaacatacacagaaaaTTTTGAA----GTACTCAG-TGC-GCCAT-GTTATAACT-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTTC-CT-TG-AAAA-AAGAT-TAAAA-T--GATT---GA--AACATTCT-CCTGGTACA--TTTTTCA--TG--AC-A-ATGGTCC-T-AAG-TATTTC-AAAAAAGGTTTTGGGTTTTTTTTT-T-A-AAAAGT-TT---AAATAACT------TT-ATTTTTAT--AATTA-CCGA-TGACAAAC--TAAGAA-GTG-AATCAC-TT-T-taggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgaagtactcagtgcgccatgttataacttttactgtcattacattttcttttttttttccttgaaaaaagattaaaatgattgaaacattctcctggtacatttttcatgacaatggtcctaagtatttcaaaaaaggttttgggttttttttttaaaaagtttaaataactttatttttataattaccgatgacaaactaagaagtgaatcactttat
gi|4 : accttttaacatacacagaaaattcaagttttccttgaaaatgctaatgacaaaatttcaaataaaaaaataaggcattttctagtaatatttttataatgtaacctcatataatattctgaaaaggcaaaaaatgttgaaagattataatcatgtactgaaatttggggtaagcggttaccatggcaacgtaataccccacaaatcaataaaatgtgtttttttgttgtgcattttgtcacatataacaacacagattgatgaactttacaactcatcatttaaatcaattttaggcctagttgtatttaacatatatacacataacatgtatgcaatattgggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTACA--ATATATAT-------CAT---ACGAAT-TATAC----------TATAT--------------CATACTTT-GAA----GTACTAAG-TGT-GC-ATAGTTATA--C-TTGTACTGTCATTTAC--ATTAT--TC--------ATT----TCCTTGTTC--CT-TG-AAAAGAAGATATAAAA-TAGCATT---GA--AACATTCT-CCTGCTACA--TTTTCTAACT---AC-AGATGG-CTAT-AAGTTA-TTC-CAAAAAGG--------------TTCT-A-AAAAGT-TTATGAAGTTACT------TTCATTTTT-T---ATTACCC-ACTGCA-AACCGT---AACGTGAAATCAC-TT-T-CCT--TA--AG---TTTTTCTT--AAATATAAGAAATT---AAAAAGTGT------T--TAG------AAT--TAGAATGTAAGTATACCTATGCGTATGTT-TGTT-CG--AGCAACATTA-TAATTCACAT-C----AATTCCTTCTAAAA---ACT-ATTTCAGACTTTTC-TTCGCATT--GAAATTTAGG-----GG-AAAAACTGTCCAAT-ATTTATC----ACTGATGTGCATGTGTAGTAC------AT--GTA-GCAGGTGTTGCAGTAATGATC--GA-TTTCTTA--G-GATGTA-GAA-AG---AAAGT--C-A-AAGGGA-A--AAAAGT-C-ACGGC-ATAGGAAGTCTCAGGG---AA-AAAGTC--ACTA--AT---AT-TTAA-G-CATGTTATTTTATT--ATTACTGACA-GTACTAATAG----G-A-ACAGAAATGTCAC-TAA---AAAAAAG--AA-GT-CAAACTG-TATGTGTT-ACATTTTTCTACTGTACATGT-A-AT-TTGTTTTCTCCGGGGat
gi|5 : tgtaATGT---ATA--T-TATATACAGAAG---TATATAGAACATGTA--TACATAATTTTGAA----GTACTAAG-AGC-GG-A--GTTATA--CCTT-TACTGTCATT-ACTGATT-TGGTC--------TTT----T--TTTTTC--CT-TG-AAAA-AAGAT--AAAA-TAGAAGT---GA--AACAT-CT-CCTGGTACAGATTTTCAA--T---ACGA-ATGGTCTAT-AAG-TA-TCA-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTCTTA-TATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-TATCC--TTAAAG---TTTT--CT--AAATCTAAGAA------AAAAAGTGT------T--TAG------AAT--TAG--TACAAACCTA---ATGT-TATATTGTG-T-CGT-GGCAACATAA-TAATT-ACATGCATCAAATTCCTTCTAAAA---ACT-ATTTCAGTCTCTTCTTTCCCATG--GAAA--TATG-----G---AAAACTGTCCAATA--TTAGT-A-AACTAATGTGCA--------AT------A---GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--GTGATGTAGGAA-AGTTAAAAGGC-------GA---A--AAAAGT-C-AC-GC-ATA-GAAGTCA---AGGAGAA-AAAGTC--AC-A--ATATAAT-TAAATGCCATG-TA-TTT-TCAAATT-CTGACA-GTAC-AATAG----GAA-A---TAATGTCAC-TGT---AAAAAAAATTA-GTCCAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATATCTTATTTTC-CCGGGGt
gi|6 : ATATT-TATATA---A--TATTGAATG--T-TATTT------ACAATATATAAA-----TA--CA--TACTTT-GAA----GTACTAAG-AGT-GC-AT-GCCATA-----T-TAC----ATTT-----TT-TAATCGAGGCAGGCTT----C--ATTTTA--CT-TA-AAAC-AAAAA-TCAAA-TAAAATT---AA--AACATTCT-TCTGGTACA--TCTTCT---T---AC-A-ATGGCCCAT-AAG-TA-TTC-AAAA------------------T-----------T-TT---AAATTACT------TA-ATTTTT-T--AACCA-CC-A-TGGC-AAC--T---AA-ATG-AATAACATT-A-TCC--TTA-AG---TTTT--CT--AAATATAA-GAA-T---AAAAATTGC------T--TAGAATTAAAAT-TTAG--TATAAACAT----ATTT-TATGTT-TG-T-CGT-GGCAACATAA-TGATT-AGAT-C----AATTCCTTCT-AAA---TTTGATT--AACCTTTTC-TTCCCAT---GAAA--TAGG-----GT--AAATTTGTGC--------AAT-A-AAC-GATGTGCA--------AT------AT--GTATGCAGGT-TT-CAGTAATGATTT-AA-TTTCTTA--G-GATGTTGGAA-GT---AAAGTCAC-AGAAAA---A--AAAAGT-C-AC-GG-ATAGGAAATCACAGG----AA-AAAGGC--AC-ACCAT---AT-TAAA--------TATTTT-AAAAATG-TT-ACA-GTAGTACTAG----G-ACA---GAAAGTCAC-TGT---AAAAA-----A-GT-CAAACTG-TATGTG-T-ACATTTTTATA-TGTACATGT-ATAT-TTATTATC-CGGGGg
gi|7 : TA---TTTATACAGATATACAAA----GTATACATT-TATATA---A--TATTGGATG--T-TATTT------T---CA-ATAGA-----TATGCACATG-TTTTGAA----ATACCAAG-TGC-GC-AT-GTTTTA--T-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTT--CT-TC-A----------TACAA-TAG----------------TCT-ACCGGTATA------------------A-GTATTCAAA-AAG-GA-TT------------------------TT-TAA-AAAAGT-TT---TTGCTATT------TA-ATTTTCAT--AATTG-CC-A-TGAC-AAC--T---AA-ATG-AATCACATTAT-TCCA-A---AG---TTTT--CT--TAATAT-AGGAA-T---GCAAAGTGTTTAAAAT--TAG------AAT-ATAG--TATAAACAT----ATTT-TGTATT-TG-C-CGT-GGCAACATAA-TAATT-ATAT-C----AATCCCTCCT-AAA---ACT-ATTTCAACCTTTTC-TTCCCAT---GAAA--TAGG-----GG--AAAACTGTCCAATAA---AGT-ATGATCAATTTGTA--------TT------ACTAGTATACTGGT-TT-CAGTAATACTGT-TA-TTTa
gi|8 : gaatcacttgGGG-TA-T-CG--TTACCATGGCA-C---GTAA--TAACCC--AACACAATCATAAA--TGTGTT-------CGT-GCATTTTGTCACA---TAT--AC-AC-CA-A-A-TGATG-AC-CTA-C-A-TCATCATT---AATC-AA-TTTT--GGTCAG-------TTGTATTT--------AT---------------CATTATA-----------------GA--------G--CATA---CTTATGCA-A-ATATGGATGCTATACATAGTATATATA---AAATAT---A----T-TA---------G----ATATAGA-----TA--CACATAC-TTTGAA----GTACTAAGAAGCGGC-TT-GTTATA--C--T-TACTGTCA-TTAC--ATT-T--TC--------CTT----T--TTTTTTTCCTATG-AAAA-ACGATATAGAA-TAGATTT---GATGAACATTCT-CCTGGTACA--TTTGCAG--T---AC-A-A--GTCTAT--------TTC-TAAAAt
gi|9 : TTCAAGTTTTCCTT-----------------T-AAAACTT-GAAAT-AAAAAATAA--GGCATT-TTCT----AATAATAGTTTTA-T---AAA-GTAAC--CAAT-AT---AC-ATTT--T-AAA---AGG--AAACATGTTG-AAGA--TT-ATAA--TCATGTAA-TGAAATAT-----GGGT-TA-A-AGG-TTACCATGGGAAG---GGAA--TAA-CCC-AACA-AATCATAAAAATGTGTTTT----TCATGGAATTTT---ACA-TATAA-AAC-ACACA-A-ATTGATG-GCTTTA-AAG-TCATCA-TTTGAATG-GA-TTTTAGGATC-------ACTTGTATTT--------AT-A-----TAAA---ATATTACAA-CC--ATAC--ATATcatttacaagcaatcagtcgataccataaattgctgttttatt
blockSeqs : C TG T T TTT . A . G . G TTATAAT CCATT ATA . CGAAA CA A . . . AA T TTTGG . AG GC . . T TA C T TTTG G A TT T A TG AA CCAA TTTTA G T ACTTGACAC ATACATTTATA C TAC T TTTAA TA GAAAATTTGCC TTT N G N NN TGCTAT N C A A ATTTAG ATATTATATACAGAAGT ACATG TG T . AA G C A ACT G T T TG A AATCGAGGCAGGCTTC TC G . G A . A G T TGA TG . GA TAACTA G G . T T TA TTTTGGGTTTTTTT C AA . ATG AGTATC TC ATA C G C A CG AAG C A TTTATCCTTAA . TC . A TT TTAAAAT AATTAA G AA T ACCT G G TT . T C GCATCA T A . G T G TT GGAA C AAT AT TG TGTGTAGTACAT G G . T . T . TTA CACAGAAAA AC C . G G A AG GG . T CA T CC ATAATTAAATGCCATGTA TAA A . . A C CAGA A A . ATT A C T TA C AT C T
blockSeqs : G G T T CA . A . . . . TTATAAT CCAC . . TGAAA . . . . . AA . TT . A G . . C A . G . . G TA T . T G CAAC TTTC A . AGTAG AACA C . T TTT A TG . T . T AA NNNNN T N N N NCAG TGAATGTTATTTACAAT . . T . T . . . CC . T T . . TTCTTGGT C A . . A . A G T . . . T CATGA . . . . . C . . T . . . A TTA . . . . . . . . ATTATCCTTA . . . G T T . T . A A . . T . . . C T A . . . T . GGA C AT A TA TTACTA . . . . . . . . CCGAAAGG . . . . C A TG GG . T . . . ATTAAATGCATGTAT TCA . . . . . A T . . A . . . TT . AT . .
blockSeqs : G A T T C . A . . . . TATAAA CAAT . . TAAA . . . . . A . . . A G . . C A . G . . G . T . A A CAG TTTG A . AC TCG T . A TGT A G . T . T GG TAC C T C A AAG TGGATGTTATTTTC . . T . A . . . C . T T . . TCATTTCC . . . . . . A G T . . . . AATA . . . . . C . . A . . . T AT . . . . . . . . ATTATTCCAA . . . G T T . A . C A . . T . . . C T . . . . G . GT G AA A CA ATAT . . . . . . . . CACAGGGA . . . . G G AG GG . T . . . ATTTAAGCATGTTAT ATT . . . . . G T . . T . . . T . AT . .
blockSeqs : . A T T C . . . . . . TAA CTC . . T . . . . . A . . . T G . . C . . G . . G . T . G A AAG TTTA A . AG ATA A . T ACC . . . . . . GT T T A A AAA ACATGTATATAG . . T . T . . . C . T T . . GGTCTTTT . . . . . . A C T . . . . AGTA . . . . . C . . A . . . T AT . . . . . . . . TTTCCTTA . . . G T T . . . A . . . T . . . C T . . . . . . GG C A A T ATAT . . . . . . . . CAAAGGGA . . . . C A AG GG . G . . . GTATTATTT TCA . . . . . T T . . A . . . T . A . .
blockSeqs : . . T . C . . . . . . . A . . . . . . G . . . . A . A G GA TTTG A . AG AT . . T . . C C T A AA ACGAATTATACT . . T . T . . . C . T . . . TCTTTT . . . . . . A A G . . . . ATG . . . . . A . . A . . . T AT . . . . . . . . . . . . . . T . . . A . . . C . . . C C . . . . . . G . . . G ATA . . . . . . . . CACAGGG . . . . C G G GG . T . . . ATTAAATAT AAA . . . . . T A . . . . . . T . A . .
blockSeqs : . . . T . . . A . CA TT G . AC T T . AA ACATTACATGT . . . . A . . . T . T . . . TCTTTT . . . . . . A A T . . . . CAT . . . . . C . . A . . . A T . . . . . . . . . . . . CACAGG . . . . G G A G . T . . . . . . . . . G . . .
blockSeqs : . G . . ATTAG . . . . A . . . C . . . . . TCCTTT . . . . . . . A T . . . . TTA . . . . . C . . . . . . A T . . . . . . . CGA . . . . . . A . . G . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : G*** ** **** TATAA****** CNAT*** TAAA****** ** ** A* TT*** A** G* *** ** *** T* A** CAA** TTTG* A* AN******* ACG************** TNT*** TGC*** AAG*** ACATTATATGT*************** **** TCCTTT**************** NATA***** A** AT** *** ** T**** T******** N* A*** T** *** G** GGA****** A** ATAT**************** ** CACAGGGA***** N* ATTAAATGCATGTAT****** **** *** T** AT*
originalCons : TTCAAGTTTTCCTTGAAAA---ACTAATGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTT---T---AAC-GTAAC--CCATCAT---AT-ATTC--TGAAA---AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTAACTGAAA-ATT---GGGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACA-T-TAT-AAC-ACACA-A-ATTGATG-ACTTTA-CAA-TCATCATTTTAAATC-GA-TTTTAGGATCAGT----ACTTGTATTTA-------AT-A-----TACA---ACATTACAT-TT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATAC-GTACATANTATATATA---AGATAT---ACG--T-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTTCCA--T---AC-A-ATGGTCTAT-AAG-TA-TTC-AAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-ATTTTTATA-AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTC-C-A-AAGG---A--AAAAGT-C-AC-GC-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--AT---AT-TAAATG-CATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
finalCons : TTCAAGTTTTCCTTGAAAAG---CTAATGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTTTATAA------GTAACCNAT---AT---AT-ATTCTAAA------AGG--AAAAATGTTG-AAGA--TT-ATAA--TCATGTA-CTGAAA-ATTT---GGGG-TAA--CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACA---TAT-AAC-ACACAA--ATTGATG-ACTTTACAA--TCATCATTTG-AATCA-A-TTTTAGGATCAN-------TTGTATTTACG--------------TACA---ACATTACATNT---ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATGC---ACATANTATATATAAG---ATATACATTATATGT---------------ATATAGA-----TA--CACATACTTTTGAA----GTACTAAG-NGC-GC-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-TTCCTTT----------------TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTTCNATA-----C-A-ATGGTCTAT-AAG-TA-TTC-AAAAAAGG--------------TT-TA--AAAAGT-TT---AAATTACT------TT-ATTTTTAT--AATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAAT----AAAAAGTGTT--------TAG------AATN-TAG--TATAAACNTA---ATGT-TATGTT-TGT--CGT-GGCAACATAA-TAATT-ACAT-C----AATTCCTTCT-AAA---ACT-ATTTCAGTCTTTTC-TTCCCATG--GAAA--TAGGGGA------AAAACTGTCCAATAATTTAATA--AACTAATGTGCAATAT----------------GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG---AAAGTCACAGGGA-----A--AAAAGT-C-AC-GN-ATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--ATATTAAATGCATGTAT------TTT-TCAAATT-CTGACA-GTACTAATAG----G-A-A---NAATGTCAC-TGT---AAAAAAA--TA-GT-CAAACTG-TATGTGT--ACATTTTTCTG-TGTACATGTAT-AT-TTATTTTC-CCGGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTCGGAAGAGAAGAGGTCACAGCGAAAAAGTCAGAATGTTATA
Unaligned ( gi|22 ): TCATACATGCATGCATATTTCCCGGTGGGAG
Alignments
lowQualScore : 1 222222222222222 1111 1 22 11 1111 11111111 11 11 1 111 11 111 11 1111 111 111 111 333333333333333 3333333333333 111 22222 44444444444 111 11111 555555555555555555555555555555555555 11111 1 2222222222222222222222 11 222222222 33333333333333333 111111 444444444444444 111 11111 111111111 111111 22 1111 1111 11111 222 222222222 1 222 111 33333333333333333333 111 3333333333333333 1111 1111 11111 111 111 111
lowQualScore : 0 555555555555555 5 3 99 6 4444 3 6 6 77 11 99 8 8 8 8888 99999999 0 8 11 8 11 8 0 11 444 6 888 33 111 99 1 44 6 2 4444 6 77 77 5 000 1 88 66 88 444 5 5 1 000 5 555555555555555 8888888888888 1 111 3 44444 99 0 55555555555 444 8 8 2 66 2 88888 1 4 333333333333333333333333333333333333 0 22222 66 8 9999 55 4 4 8 9999 66 1 4 4 66 4 3333333333333333333333 00 8 4 4 8 4 1 5 1 777 66 4 55 4 111111111 4 4 4 4 4 0 00000000000000000 5 777 5 888 444444 55 5 66 3 5 5 5 5 5 66 888 5 5 666666666666666 111 99 99 9 77777 999999999 999999 00 99 1 9999 6 6 666 6 6 6 4444 6 1 6 33333 6 0 6 000 99 777777777 0 111 0 222 55 44444444444444444444 6 6 6 6 77 5 5 77 4 1 4 4 8 4 4 55 4 2 4 444 4 7777 4 66 6666666666666666 1 5555 5 6 2222 5 66666 1 5 000 222 6 6 6 222 6 777 6 6
lowQualScore : . ............... . . .. . .... . . . .. .. .. . . . .... ........ . . .. . .. . . .. ... . ... .. ... .. . .. . . .... . .. .. . ... . .. .. .. ... . . . ... . ............... ............. . ... . ..... .. . ........... ... . . . .. . ..... . . .................................... . ..... .. . .... .. . . . .... .. . . . .. . ...................... .. . . . . . . . . ... .. . .. . ......... . . . . . . ................. . ... . ... ...... .. . .. . . . . . . .. ... . . ............... ... .. .. . ..... ......... ...... .. .. . .... . . ... . . . .... . . . ..... . . . ... .. ......... . ... . ... .. .................... . . . . .. . . .. . . . . . . . .. . . . ... . .... . .. ................ . .... . . .... . ..... . . ... ... . . . ... . ... . .
lowQualScore : 8 222222222222222 7 2 22 7 2222 3 7 7 00 00 00 0 0 0 0000 66666666 6 0 00 0 00 0 6 88 000 7 777 33 777 22 0 00 7 5 2222 7 99 44 7 444 4 00 44 00 777 7 7 0 000 7 777777777777777 3333333333333 0 777 5 22222 88 6 00000000000 000 6 0 8 22 8 66666 0 5 999999999999999999999999999999999999 1 55555 99 2 4444 44 4 4 9 7777 33 9 6 6 11 4 6666666666666666666666 66 9 4 4 9 4 9 4 8 888 11 0 55 0 111111111 4 4 4 4 4 1 00000000000000000 0 222 0 888 444444 88 0 99 2 0 0 0 0 0 99 888 0 7 777777777777777 777 22 22 3 55555 333333333 222222 77 22 0 0000 7 7 888 7 7 7 2222 7 7 7 77777 7 3 7 000 22 222222222 8 777 3 555 88 00000000000000000000 7 7 7 7 99 7 7 99 4 1 4 4 9 4 4 44 6 7 9 000 4 9999 4 11 1111111111111111 4 3333 7 7 1111 7 77777 9 7 000 888 7 7 7 555 7 555 7 7
consensus : TTCAAGTTTTCCTTGAAAA-GCTAA---TGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTTT-AT-AAC-GTAAC--C-CAT-AT-AT-ATTCCGA--AAAGG--AA----AAATGTTG-AAGA--TT-ATAA--TCATGTA-CTGAAAATTT---GGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT--AT-AAC-ACACA-A-ATTGATG-ACTTTAC-AA-TCATCATTT-AAATC-GATTTT-AGGATCAGT---T-G---------------TATTT-ATA---------TACA---ACATTACATNT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATGC---ATACANTATATATA---AGATAT---AC--GT-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAGN-GCG-C-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTT-C--NA--T-AC-A-ATGGTCTAT-AAG-TA-TTCAAAAAA-GG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-A-TTTT--TATAA-TTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT----CAA-TTCCTTCT-AAA---A-CT-ATTTCAGTCTTTTCTT-CCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG--AA-AGTCACAG-G-G-AAAAAAGTC-AC-G-GATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--ATAT---TAAATGC-ATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----GA-A---N-AATGTCAC-TGT---AAAAAAA--TA-GTC-AAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
Reference ( family-1086 ) : TTCAAGTTTTCCTTGAAAA-GCTAA---TGACT-AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATA-TTTT-AT-AA--GTAAC--C-NAT-AT-AT-ATTCT-A--AAAGG--AA----AAATGTTG-AAGA--TT-ATAA--TCATGTA-CTGAAAATTT---GGGG-TA-A-CGG-TTACCATGGCAAC---GTAA--TAACCCC-AACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACAT--AT-AAC-ACACA-A-ATTGATG-ACTTTAC-AA-TCATCATTT-GAATC-AATTTT-AGGATCANT---T-G---------------TATTT-ACG---------TACA---ACATTACATNT--ATGC-AATATTGA------TTG--CCTA---TTTACGCA-ATATATAGATGC---ACATANTATATATA---AGATAT---AC--AT-TATAT------G---TATATAGA-----TA--CACATACTTTTGAA----GTACTAAGN-GCG-C-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TC--------CTT----T--TTTTTT--CT-TG-AAAA-AAGAT-TAAAA-TAGGATT---GA--AACATTCT-CCTGGTACA--TTTT-C--NA--T-AC-A-ATGGTCTAT-AAG-TA-TTCAAAAAA-GG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-A-TTTT--TATAA-TTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-T-TCC--T---AG---TTTT--CT--AAATATAAGGAA-T---AAAAAGTGT------T--TAG------AAT-NTAG--TATAAACNTA---ATGT-TATGTT-TG-T-CGT-GGCAACATAA-TAATT-ACAT----CAA-TTCCTTCT-AAA---A-CT-ATTTCAGTCTTTTCTT-CCCATG--GAAA--TAGG-----GG-AAAAACTGTCCAATAATTTAAT-A-AACTAATGTGCA--------AT------AT--GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--G-GATGTAGGAA-AG--AA-AGTCACAG-G-G-AAAAAAGTC-AC-G-NATAGGAAGTCACAGGGGAAAA-AAAGTC--AC-A--ATAT---TAAATGC-ATG-TATTTT-TCAAATT-CTGACA-GTACTAATAG----GA-A---N-AATGTCAC-TGT---AAAAAAA--TA-GTC-AAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGG
gi|1 : TTCAAGTTTTCCTTGAAAA--CTAACAATGA-T-ACAATTTTCAAATAAAAAAATAGATGGCATT-TTCTTCTAAGTAATA-TG---AT-AACTGTAACACC-CAT-AT-ATTATTTC-ATGAAAGG--AAGGGAAAATGTTG-AAGACATTGATAAATCCATGTA-CTGAAAATTG---GGGGGTAGA-CG--TTACCATGGCAACCACGTAAAATAACCCC-A-CA-AATCATAAAAATGT---TT----TCGT-GCATTTTGTCACAT--ATCAAC-ACACA-ACATTG-TG-ACTTTAC-AA-TCATCATT--AAATCCAATTTT-AGGATCAGT---TTG---------------TATTT-ATACATAGGTAATACA---GCAT-ACAGATT-ATGC-AATATGGA------TTG--GCTA---TTTACAAA-ATATATAGATAC---G-ATAATATA--------GATAT-----------------------------TAGA-----TA--CACATACTTT-GAAAGTAGTACTAAGA-ACG-C-ATCGTTATA--C-TT--ACTGTCATTTAC--ATT-T--TC--------TTTCTTGT--TTTCCT--CT-TGAAAAA-AAGAT-TAAAAGTAGAA-T---GA--AACATTCTCCCTGGTACA--TTTT-CATTA--A-AC-A-ATGGTCTATAAAG-TA-TTCAAAAAA-GG--------------TT-T-ACAAACGTATT---AAATTATT------TT-ATTTTT--TATAA-TTA-CC-A-CGAC-AAC--T----A-GTG-AATCAC-TT-TATCCATT---AACGTTTTT--CTTAGAATATAA-GAA-TTAAAAAAAGTGT------TTATAG------AATCGTAG--TATAAACCTA---TGGT-TATGTT-TG-TCCGTGGGCAACATTA-TAA-T-ACAT----AAA-T--CTTCT-TAATTTA-CT-ATTTCAGTCTTTTCT---CCATGGAGAAA--TAGGGGGAAGG-AAAAACTGT-CAAT-ATTTAATAA-AACTAATGTGCA--------ATTGATACAT--G-ATACAGGT-TT-C-GTAATGATCTGAA-TTTCTTAAGG-GATGTAGGAAGAG--AAGGGTCAAAG-G-GAAAAAAAGTCAAC-GCAATAGGAAGTCACAGGGAAAAATAAAGTC--AC-A--ATATA--TTAATGC-ATG--A-TTT-TCAAATT-CTGACATATACTAATAGGATCGA-A---T-AATGTCAC-TGTATAAAAAAAA--TA-GTC-AAACTG-TATGTG---ACATTTT--TG-TGT-CATGTCGTAT-TTATTTTC-CGGG
gi|10 : taaccctttagactaccaaaagaatTTCAAGTTTTCCTTCAAAA--CTGA---TGACA-AAAATTT-CTAATAAAAAA-TAA--GGCATT-TTCT----AGTAATG-TTTTTAT-AAT-GTAGC--C-CAC-AT-AT-ATCCT-A--AAA-------------TGTTG-AAGA--TT-ATAA--TTATGTA-CTGAAAA--T---GGGG-TA-A-CGG-TTATCATGGCAAC---GAAA--TAATCCC--ACA-GGTCATAAAAAT-TTTTTT----TCGT-GCATTTTATCACAT--A--AAC-ACACA-T-ATGGATG-GTTTTA--GA-TAACCATTT-CAATA-GATTTT-AGGATCACT---T-G---------------TAT
gi|11 : gccctttaactacctgaaaatACAATATATATATTTAGATAT---AC--ATGTATAT------A---GATATAGA-----TA--CACATACTTT-AAA----GTACTAAGT-GCG-C-AT-GCTATA--C-TT-TAC---------------------------------------TTTTTC--CT-TG-AAAA-AAGAT-TAAAA-T-TGATT---GA--AACATTCT-CCTGGTACA--TTTT-C--
gi|12 : tattt--AT-AAG-ACACA-A-ATTGATG-ACTTTAC-AG-TCATCATTT-GAATC-AATTTT-AGGATCACT---T-GACACTAGTATTTATACATTT-ATA---------TACA---ACA-TACATTTAAATGC-AATTTTG
gi|13 : TCT-CCTGGTACA--TTTT-C---A--T-GC-A-ATGGTCTAC-AAG-TA-TTCAAAAAG-GT--------------TT-T-T-AAAAGT-TT---AAATTACTAGTATCTA-A-TTTT--TATAA-TTA-CC-A-TGGC-AAC--T---AA-gacgcaaaat
gi|14 : --G-GGTGTAGGAA-AG--AA-AGTCACAG-G-A-ACAAAAGTC-AC---AAGAAAAAGCCAC-GGGGAAAA-AAAGT----C-A--AT----------------------------ATT-CTGACA-GTACTACTAA----GA-A---A----GTCAA-TGT---AA
gi|15 : TA--G-GGTGTAGGAA-AT--AA-AGTCACAG-G-G-AAAAAATCC-AC-G-GATAAAGAGTCACA--GGAAAG-AAAG-C--AC-A--ATGT------AT----TA-TTTTTT-TAAAATT-
gi|16 : G----AA-A---G-AAAGTCAC-TGT---AAAAAAA--AAAGTC-AAACTG-TGTGTG-T-ACATTTTTCTA-TGTACATGT-A-----TATTCTC-CCGGGG
gi|17 : agTTCAAATTTTCCTT-CAAA-GCTGA---TGAC--AAAATTT-CAAaa
gi|18 : caaccctttagctaccagaaaatCTAA---TGAC--AAAATTT-CAAATAAAAAAATGA--AGCATT-TTCT----AGTAATA-TTTT-AT-A
gi|19 : a-AGTCACAG-G-GAAAAAAAGTC-AC-G-GA-AAAAAGTCACTGG---AAA-AAAGGC--AC-A--ACAT---taat
gi|2 : TTCAAGTTTTCCTTGAAAA-ACTAA----GATTTAAAATTT-CAAATAAAAA--TAA--GGCATTGTTCT----AGTAATA-TTTT-A---A--GTAAC--C-CATTAT-AT-ATTCCGA--AAAGG--AA----AAATGTTG-AAGA--TT-ATAA--CCATGAAACTGAAACTTTTGGGGGG-TA-A-CGGCTTACCATGGCAAC---GTAA--TAACCCCTAACA-AATCATAAAAATGTGTTTT----TCGT-GCATTTTGTCACATTTAT-AAC-ACACATG-ATTGATG--CTTTACCAA-TCATCATTTTAAATC-AATTTTTAGGATCAGTAGTT-G---------------TATTT-TCG---------TACA---ACATTACATTT--ATGCTAGTATTGA------T-G--CCTA---TTNNNNNN-NNNNNNNNNNNN---NNNNNNNNNNNNNNNNCAGATAT---AC--AT-TACAT------G---TATATAAT-----TA--CACATACTTTTGAA----GTACTAAGA-GCA-C-AT-GTTATA--C-TT-TACTGTCATTTAC--ATT-T--TT--------CTTGG--T--TTTTTT--CTGTG-AAAA-AAGAT-TAAAA-TAGGATTTGAAA--AACATT-T-CCTGGGACA--TTTTTC--CA--T--C-A-ATGGTCTAT-AAG-TA-TTTAAAAAAAGG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-A-TTTT--TATAAATTA-CC-A-TGAC-AAC--T---AA-GTG-AATCA-----------------G---TTTT--CT--AAATATAAAGAA-T---AAAAAGTGT------T--TAG------AAT-GTAG--TATAACCTTA---ATGT-TATG-T-TG-T-CGT-GGCAACACAATTAATT-ACAT----CAA-TTCCTTCT-AAA---A-CT-ATTTCAGTCTTTTTCT-TCCATG--GAAA--TAGG-----GGAAAAAACTGT-CAATAATTTAAT-A-AACT-ATGTGCA--------AT------AT--GTATACAGTT-TT-GAGTAATGATCT-AATTTTCTTA--G-GATGTAGGAA-AG--AA-AGTCCGAA-A-G-GAAAAAGTC-AC-G-CATAGGAAGTCACAGGGGAAAA-AAAGTTCAAC-A--ATAT---TAAATGC-ATG-TATTTT-TCAAATT-CTG-CA-GTACTAATAG----GA-A---T-AATGTCACATGT---AAAAAAA--TA-GTC-AAA-TGTTATGTG-TAACATTTTTCTG-TGTACATGT-ATAT-TTATTTTC-CCGGGGat
gi|20 : -AGTCACAG-G-G-AAAAAAGTC-AC-G-GA-AAAAAGTCACTGG---AAA-AAAGGC--AC-A--ACAT---
gi|3 : TTCAAGTTTTCCTTGAAAATGCTAA---TGAC--AAAATTT-CAAATAAAAAAATAA--GGCATT-TTCT----AGTAATATTTTT-AT-AAT-GTAAC--CTCAT-ATAAT-ATTCTGA--AAAGGCAAA----AAATGTTGAAAGA--TT-ATAA--TCATGTA-CTG-AAATTT---GGGG-TA-AGCGG-TTACCATGGCAAC---GTAA--T-ACCCC--ACA-AATCAATAAAATGTGTTTTTTTGTTGT-GCATTTTGTCACAT--AT-AACAACACA-G-ATTGATGAACTTTAC-AACTCATCATTT-AAATC-AATTTT-AGGCCTAGT---T-G---------------TATTTAACA---------TATATACACATAACATGT--ATGC-AATATTGGGAAAATTTGCCCCTATTTTTTA-GCA-ATATAT--ATAC---ATATACTATATATA---AGat
gi|3 : accttttaacatacacagaaaaTTTTGAA----GTACTCAGT-GCG-CCAT-GTTATAACT-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTTC-CT-TG-AAAA-AAGAT-TAAAA-T--GATT---GA--AACATTCT-CCTGGTACA--TTTT-T--CA--TGAC-A-ATGGTCC-T-AAG-TATTTCAAAAAA-GGTTTTGGGTTTTTTTTT-T-A-AAAAGT-TT---AAATAACT------TT-A-TTTT--TATAA-TTA-CCGA-TGACAAAC--TAAGAA-GTG-AATCAC-TT-T-taggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttgaagtactcagtgcgccatgttataacttttactgtcattacattttcttttttttttccttgaaaaaagattaaaatgattgaaacattctcctggtacatttttcatgacaatggtcctaagtatttcaaaaaaggttttgggttttttttttaaaaagtttaaataactttatttttataattaccgatgacaaactaagaagtgaatcactttat
gi|4 : accttttaacatacacagaaaattcaagttttccttgaaaatgctaatgacaaaatttcaaataaaaaaataaggcattttctagtaatatttttataatgtaacctcatataatattctgaaaaggcaaaaaatgttgaaagattataatcatgtactgaaatttggggtaagcggttaccatggcaacgtaataccccacaaatcaataaaatgtgtttttttgttgtgcattttgtcacatataacaacacagattgatgaactttacaactcatcatttaaatcaattttaggcctagttgtatttaacatatatacacataacatgtatgcaatattgggaaaatttgcccctattttttagcaatatatatacatatactatatataagtaggatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATATATAT-------CAT---ACGAAT-TATAC----------TATAT--------------CATACTTT-GAA----GTACTAAGT-GTG-C-ATAGTTATA--C-TTGTACTGTCATTTAC--ATTAT--TC--------ATT----TCCTTGTTC--CT-TG-AAAAGAAGATATAAAA-TAGCATT---GA--AACATTCT-CCTGCTACA--TTTT-C--TAACT-AC-AGATGG-CTAT-AAGTTA-TTCCAAAAA-GG--------------TTCT-A-AAAAGT-TTATGAAGTTACT------TTCA-TTTT--T-T-A-TTACCC-ACTGCA-AACCGT---AACGTGAAATCAC-TT-T-CCT--TA--AG---TTTTTCTT--AAATATAAGAAATT---AAAAAGTGT------T--TAG------AAT--TAGAATGTAAGTATACCTATGCGTATGTT-TGTT-CG--AGCAACATTA-TAATTCACAT----CAA-TTCCTTCTAAAA---A-CT-ATTTCAGACTTTTCTT-CGCATT--GAAATTTAGG-----GG-AAAAACTGTCCAAT-ATTTATC----ACTGATGTGCATGTGTAGTAC------AT--GTA-GCAGGTGTTGCAGTAATGATC--GA-TTTCTTA--G-GATGTA-GAA-AG--AA-AGTCAAAG-G-G-AAAAAAGTC-ACGG-CATAGGAAGTCTCAGGG---AA-AAAGTC--ACTA--ATAT---TTAA-GC-ATGTTATTTTATT--ATTACTGACA-GTACTAATAG----GA-ACAGA-AATGTCAC-TAA---AAAAAAG--AA-GTC-AAACTG-TATGTGTT-ACATTTTTCTACTGTACATGT-A-AT-TTGTTTTCTCCGGGGat
gi|5 : tgtagtATGT---AT--AT-TATATACAGAAG---TATATAGAACATGTA--TACATAATTTTGAA----GTACTAAGA-GCG-G-A--GTTATA--CCTT-TACTGTCATT-ACTGATT-TGGTC--------TTT----T--TTTTTC--CT-TG-AAAA-AAGAT--AAAA-TAGAAGT---GA--AACAT-CT-CCTGGTACAGATTTT-C--AA--T-ACGA-ATGGTCTAT-AAG-TA-TCAAAAAAA-GG--------------TT-T-A-AAAAGT-TT---AAATTACT------TT-A-TTTTCTTATA--TTA-CC-A-TGAC-AAC--T---AA-GTG-AATCAC-TT-TATCC--TTAAAG---TTTT--CT--AAATCTAAGAAA------AAAAGTGT------T--TAG------AAT--TAG--TACAAACCTA---ATGT-TATATTGTG-T-CGT-GGCAACATAA-TAATT-ACATGCATCAAATTCCTTCT-AAA---AACT-ATTTCAGTCTCTTCTTTCCCATG--GAAA--TATG-----G---AAAACTGTCCAATA--TTAGT-A-AACTAATGTGCA--------AT------A---GTATACAGGT-TT-CAGTAATGATCT-AA-TTTCTTA--GTGATGTAGGAA-AGTTAA-A-----AG-GCG-AAAAAAGTC-AC-G-CATAG-AAGTCA---AGGAGAA-AAAGTC--AC-A--ATATAATTAAATGCCATG-TATTTT--CAAATT-CTGACA-GTAC-AATAG----GA-A---ATAATGTCAC-TGT---AAAAAAAATTA-GTCCAAACTG-TATGTG-T-ACATTTTTCTG-TGTACATGT-ATATCTTATTTTC-CCGGGGt
gi|6 : ATATT-TATATA---A--TATTGAAT--GT-TATTT------ACAATATATAAA-----TA--CA--TACTTT-GAA----GTACTAAGA-GTG-C-AT-GCCATA-----T-TAC----ATTT-----TT-TAATCGAGGCAGGCTT----C--ATTTTA--CT-TA-AAAC-AAAAA-TCAAA-TAAAATT---AA--AACATTCT-TCTGGTACA--TCTT-C--T---T-AC-A-ATGGCCCAT-AAG-TA-TTCAAAA-------------------T-----------T-TT---AAATTACT------TA-A-TTTT--T-TAA-CCA-CC-A-TGGC-AAC--T---AA-ATG-AATAACATT-A-TCC--TTA-AG---TTTT--CT--AAATATAA-GAA-T---AAAAATTGC------T--TAGAATTAAAAT-TTAG--TATAAACAT----ATTT-TATGTT-TG-T-CGT-GGCAACATAA-TGATT-AGAT----CAA-TTCCTTCT-AAA---T-TTGATT--AACCTTTTCTT-CCCAT---GAAA--TAGG-----GT--AAATTTGTGC--------AAT-A-AAC-GATGTGCA--------AT------AT--GTATGCAGGT-TT-CAGTAATGATTT-AA-TTTCTTA--G-GATGTTGGAA-GT--AA-AGTCACAGAA-A-AAAAAAGTC-AC-G-GATAGGAAATCACAGG----AA-AAAGGC--AC-ACCATAT---TAAA--------TATTTT-AAAAATG-TT-ACA-GTAGTACTAG----GACA---G-AAAGTCAC-TGT---AAAAA-----A-GTC-AAACTG-TATGTG-T-ACATTTTTATA-TGTACATGT-ATAT-TTATTATC-CGGGGg
gi|7 : TA---TTTATACAGATATACAAA-GT---ATACATT-TATATA---A--TATTGGAT--GT-TATTT------T---CA-ATAGA-----TATGCACATG-TTTTGAA----ATACCAAGT-GCG-C-AT-GTTTTA--T-TT-TACTGTCA-TTAC--ATT-T--TC--------TTT----T--TTTTTT--CT-TC-A----------TACAA-TAG----------------TCT-ACCGGTATA-------------------A-GTATTCAAA-AAG-GA-TT------------------------TT-TAA-AAAAGT-TT---TTGCTATT------TA-A-TTTT--CATAA-TTG-CC-A-TGAC-AAC--T---AA-ATG-AATCACATTAT-TCCA-A---AG---TTTT--CT--TAATAT-AGGAA-T---GCAAAGTGTTTAAAAT--TAG------AAT-ATAG--TATAAACAT----ATTT-TGTATT-TG-C-CGT-GGCAACATAA-TAATT-ATAT----CAA-TCCCTCCT-AAA---A-CT-ATTTCAACCTTTTCTT-CCCAT---GAAA--TAGG-----GG--AAAACTGTCCAATAA---AGT-ATGATCAATTTGTA--------TT------ACTAGTATACTGGT-TT-CAGTAATACTGT-TA-TTTa
gi|8 : gaatcacttgGGG-TA-T-CG--TTACCATGGCA-C---GTAA--TAACCC--AACACAATCATAAA--TGTGTT-------CGT-GCATTTTGTCACAT--AT-A-C-AC-CA-A-AT-GATG-ACCT-AC-A--TCATCATT---AATC-AATTTT-GG--TCAGT---T-G---------------TATTT-AT------------------CATTATA----------------GA--------G--CATA---CTTATGCA-A-ATATGGATGCTATACATAGTATATATA---AAATAT---A----T-TA---------G----ATATAGA-----TA--CACATACTTT-GAA----GTACTAAGAAGCGGC-TT-GTTATA--C-TT--ACTGTCATT-AC--ATT-T--TC--------CTT----T--TTTTTTTCCTATG-AAAA-ACGATATAGAA-TAGATTT---GATGAACATTCT-CCTGGTACA--TTTG-C--AG--T-AC-A-A--GTCTAT--------TTCTAAAAt
gi|9 : TTCAAGTTTTCCTT------------------T-AAAACTT-GAAAT-AAAAAATAA--GGCATT-TTCT----AATAATAGTTTT-ATAAA--GTAAC--C-AAT-AT-AC-ATTTT-A--AAAGG--AA----ACATGTTG-AAGA--TT-ATAA--TCATGTA-ATG-AAATAT---GGGT-TA-A-AGG-TTACCATGGGAAG---GGAA--TAA-CCC-AACA-AATCATAAAAATGTGTTTT----TCATGGAATTTTA-CATAT--AA-AAC-ACACA-A-ATTGATG-GCTTTAA-AG-TCATCATTT-GAATG-GATTTT-AGGATCACT---T-G---------------TATTT-ATA---------TAAA---ATATTACAACC--ATAC--ATATcatttacaagcaatcagtcgataccataaattgctgttttatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTCGGAAGAGAAGAGGTCACAGCGAAAAAGTCAGAATGTTATA
Unaligned ( gi|22 ): TCATACATGCATGCATATTTCCCGGTGGGAG