lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 666 4 4 4 444 2 999999999999 222 4 4 4 22 4 4 8888 4 4 4 1 4 55 1 22 88888888888888888888 4 4 22 4 77777 4 4 33 55 4 1 4 4 1 5555555 4 4 55 4 22222222222222222222222222222222222222222222222222222222222222222222222 222 666666666 222 2 2 2222 333 22222 11 33 4 444444 4 4 1 2222 444444444 1 2222222222222222222222222222222222222222222222 4 55555 2 2 2 22 44 4 2 2 333 1 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333 1 44 1 33 4 4 777 4 777 444444444 444 1 11 4 444444 66666666666 444444 555 4 444444444 2222 333 444444444444444444444 33 11 1 22222222222222222222222222222222222 33 55555555555555555555555555555555555555555555555555555555555555 2222 44 6666666 2 22 55555 555555 2 22 2 4 11 4 55 4 1 33 4 4 4 6666 1 777 666 33 55 4
lowQualScore : 111 0 0 0 111 2 0 777777777777 000 4 2 0 0 0 33 0 0 5555 0 0 6 0 5 0 55 5 11 44444444444444444444 0 0 11 0 66666 0 0 00 55 0 5 0 0 7 6666666 0 0 6 55 0 77777777777777777777777777777777777777777777777777777777777777777777777 222 333333333 000 2 4 6 6 0 0 2222 111 88888 99 11 2 2 0 222222 0 6 0 5 8888 444444444 5 5555555555555555555555555555555555555555555555 0 22222 0 2 3 66 0 44 33 4 0 0 0 222 5 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7777 5 33 5 11 4 0 0 000 0 000 333333333 6 666 3 5 88 2 0 333333 4 99999999999 111111 777 0 999999999 1111 222 111111111111111111111 1 7 00 88 55 3 77777777777777777777777777777777777 88 6 33333333333333333333333333333333333333333333333333333333333333 2222 55 3333333 0 77 2 33333 3 777777 0 88 2 3 2 44 0 0 22 0 55 6 0 5 00 0 0 0 6 0000 7 000 111 22 55 0
lowQualScore : ... . . . ... . . ............ ... . . . . . .. . . .... . . . . . . .. . .. .................... . . .. . ..... . . .. .. . . . . . ....... . . . .. . ....................................................................... ... ......... ... . . . . . . .... ... ..... .. .. . . . ...... . . . . .... ......... . .............................................. . ..... . . . .. . .. .. . . . . ... . . .......................................................................................... .... . .. . .. . . . ... . ... ......... . ... . . .. . . ...... . ........... ...... ... . ......... .... ... ..................... . . .. .. .. . ................................... .. . .............................................................. .... .. ....... . .. . ..... . ...... . .. . . . .. . . .. . .. . . . .. . . . . .... . ... ... .. .. .
lowQualScore : 000 0 0 0 000 5 0 555555555555 000 0 5 0 0 0 00 0 0 0000 0 0 0 0 0 0 00 0 00 00000000000000000000 0 0 00 0 00000 0 0 00 00 0 0 0 0 0 0000000 0 0 0 00 0 55555555555555555555555555555555555555555555555555555555555555555555555 000 000000000 000 5 0 0 0 0 0 0000 000 00000 00 00 5 5 0 000000 0 0 0 0 0000 000000000 0 5555555555555555555555555555555555555555555555 0 00000 0 5 0 55 0 00 00 0 0 0 0 555 5 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555 0 00 0 00 0 0 0 000 0 000 000000000 0 000 0 0 55 5 0 000000 0 55555555555 000000 555 0 000000000 2222 888 222222222222222222222 0 3 77 33 00 3 55555555555555555555555555555555555 00 0 77777777777777777777777777777777777777777777777777777777777777 7777 00 0000000 0 55 5 55555 0 555555 0 00 5 0 5 00 0 0 00 0 00 0 0 0 00 0 0 0 0 0000 0 000 000 00 00 0
consensus : NAGGCAAG--TTTTGTTGAAATATCA-CTTGACA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAAGGTCATNGAATGCACGAAATTTAGGGTCAGATNNCAGCANCTNGACCATGAGG-TAGAAGCGTGTCACTAGCAAGCATGGTTGGTAATTTTGTTTGGCTTCAGGTGAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGATTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCTGG-TTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGAAGGGATTATCAAACACACAAATGCGTCCGGTTGT-GGA-ACTAGGGATTATCAGGGATTANGAAGNCACAGGAAGCTCCCAATATTTTACCCCCAACATATAAAGTCCGCTCTTAAACTTCTCAAAAACTACATAATCANACTTTATTATCCTTACAATCATGCTNTAATTTGTNATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGGAACTGATTTATTAAAGTGATCTTTCANNATGACCTGCTCTTTTCTAA-TGCAGGTNTATGATTTGCTTTTTCTGTATAACCGTAACAGTGTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATG-ATATACTGATGTAANAGACTTNNTATGTAATATNATAGA-TTTNTGT-TCAGATCACACAGACAGAGCAGCANNCACACCAATGTGTGTGTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACNGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCAC---ATGACTGA-GGAAATGTCTGATGTTCTGGAAA---TGAACTG-TANGAGC-CAAAATCAA-ATTCCTACTGNCGTGGTGTACACCTCCAGTTACTAACTCTCTATATCNCATTTA-CTAGAT-ACTT-ACATGTATATGTCTNTAATGTATGTACATGTATATATAC-CAGCAATTAAAC--NTGTGGACC-ACATTCATAG-ATATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCT--ATCAAGTC-GACTTAT--CAGAGTTTCCGAAAA--CCAAAAA-TT-TCTCAGTCATCAGACATTAAAGGACTGATGGCTTT--TGAGTGTGTTCTGCGCGGTCCGGAACAAATTCTA--TCAGTC---------------C--GAA---TAAA---TTC-GTAACTAAC-------A--GTAGCCGT-TG-TTCAG-TGTTGTATAATTACCCNCCCCAAAAGCAAAAAACAAANAAAAAACCNGTAAGTCTAAGAGCCTATANNTAAACGANTAACTCNAAANTATGTAATCA-TACTTTTTTCTAAAGTG-TTGGAG--TCTGGCAAAGCTTTTCATTTTACAA-CCTGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAA-CG-TTTTTGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATC
Reference ( gi|1 ) : CAGGCAAAGTTTTTGTTGAAATATCAGCTTGACAACAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GAGTCAATGAAAGTCATGAA-TGTA----------G-TCAGATGCCAGCATCTCGACCATGAGGGTAGAA-CGTGTCACTAGCAAGCA-GGTTGGTAATTTTGTTTGGCTTCAGGTGAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGATTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CAC-AAC--ATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAA-TCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGA--ATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGAC-AAAATAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAG-AAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCT-----TGG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTA-CCC-AACATAT-AA-TCCGCTCTT-A-CTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATC-TGGA-CCATGTCAAAAACATAATGTTACAC-ACTGCTTATCAAACTCATATCCATGTA-GG-ACTGATTTATTAAAGTGATTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAA-AGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATA-TATAGATTTTTTGTGTCAGA-CACACAGACAGA-CAGCACCAACACCAATGTGTGTGT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTT-A-GT------ATGTATATATACGCAGC-ATTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAGAGTTTCCGAAA----ACCAAC--AATTTCT--ATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAAAATT-TCTCA---AT------TT---GGACTGATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTC---------------CCGAAA---TAAA---TTC-GTAA-TAGC-------A--GTAGCTGT-TGGTTCA--TGTTGTATAATTACGCA----AAAA-CAAAA--CAAACAAAA---CTGTAAG------AGCCT-TATATAAACAAATAACTCCAAAA-ATGT-ATCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTGACA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAAG--CATGAAATGTA----------GGTCAGATGC-AGCATCTCGACCATGAGG-TAGAAGCGTGTCACTAGCAAGCATGGTTGGTAATTTTGTTTGGCTTCAGGTGAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGATTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCTGG-TTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCC-AACATATAAA-TCCGCTCTTAA-CTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GGAACTGATTTATTAAAGTGATTTTTCAAAATA-CCTGTTCTTTTCTAA-TGCAGGTCTATGATTTGCTTTTTCTGTAT-ACCGTAACA--GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATG-ATATACTGATGT-ACAGA-TTTGTATATAATATTATAGA--TTTTGT-TCAGA-CACACAGACAGA-CAGCAAACACACCAATGTGTGTGTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAAA----TACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCAC---ATGACTGA-GGAAATGTCTGATGTTCTGGAAA---TGAATTG-TATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTA-CTAGAT-ACTT-ACATGTATATGTCTTTAA-GT------ATGTATATATAC-CAGCAATTAAAC--GTGTGGACC-ACATTCATAG-ATATT--GCAGAGTT
gi|15 : AATGAA-GTCATTGA-TGCACGAAATTTAGG-TCAGATTGCAGCAACTGGACCATGAG
gi|3 : caagatggtcagaactaGG--------------TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTA-CCCCAATATAT-AAGTCTGCTCTT-AACTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGA-ACTGATTTATTAAAGTGATCTT--ACTATGATTTGCT-TTTTCT--------GTATA-------------CTG--TAAC------AGT--TATAAACAACATGTATATACAGAAATC-TGGAGAG-ATG-ATATACTGATGTAAAAGACTTATTATGT-ATA-AATAGA-TTTATGT-TCAGATCACACAGACAGAGCAGCACC-ACACCAATGTA-GTGT-Cttagatgtatgccac
gi|3 : AAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCAC---ATGACTGA-AGAAATGTCTGATGTTCTGGAAA---TGAACTG-TAAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTC--TATCACATTTA-CTAGAT-ACTT-ACATGTATATGTCTAT-ATGTATGTACATGTATATATAC-CAGCAATTAAAC--CTGTGGACC-ACATTCATAG-ATATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCT--ATC-AGTC-AACTTAT--CAAAGTTTCTG-AAAAACT-AAAAATT-TCgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|9 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtAGTTTCTGTG--AGATTTTACAGAACAGTACCAATTAAATCTCT--G--AAGTT----TTACTGCAGAGTTTCCGAAAA--CCAACAATTTCTCTCAGTCAT------TT---GGATTGATGACT----TGAGTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTC---------------C--GAA---TAAA---ACA-GTAACTAACAGTACTGA--GTAGCTGT-T-GTTCAT-TGTTGTAAAAgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|12 : AGAGTTTCCGAAA----ACCAA---AATTTT----TCAA-TCAGAC--AT--TAAAaaaaa
gi|17 : GAGTTTCCGAAA----ACCAA---AATTTTTCAATCAagacatggctttgtgtgttctagtggtccgaaagaaagtataccatttcaaacaaattctacaacaaaataactgt
gi|12 : AGAGTTTCCGAAAA--CCAAAA--TT-TTTCA---ATCAGACATTAAAAGAC--ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTT---------------C--AAA---CAAA---TTCTACAA-CAA--------A--ATAACTGT-
gi|3 : AACAATTTCTA--TCAGTCAACTTATCAAAGTTTCTGAAAAACTAAAAATTTC-GTAACTAGC-------AACGTAGCTGTATGTTTCAGTTGTTGTATAATTAC-CA----AAAAGCAAAA--CAAACAA-----CGGTAAG------AGCCTATATATAAACAACTAACTCAAAAT-ATGTAATCA-TACTTTTTTCTAAAGTG-TTGGAG--TCTGGCAAAGCTTTTCATTTTACAA-CCTGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAA-CG-TTTTTGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATC
gi|13 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccC-------A--GAAGCCAT-TG-TTCAG-TGTTGTATAATTACCCCCCCCAAAA-CAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGT-
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): AACTGGGCATAATTGAAAAACGGTACATTTTCACACCACATTCTTTCTGATTATATATAAATAACTTTTCATGTAGCCTTGTAATTTACATGCACAATCCACAGTGCACCTTGCAAACTGATTGTTCACACCTAAATATCGCAATCACAGTTTGCTCTTTACGTGTTTTAGATATTTCTAATCAGAAGGCACCTTCGTGTTAATTTTACGATGCAATGTTGATAGATATAAATGCAATAAACACAACACTTGGTGGCGGACGAGTTTTATTGATACATCACTTGTAATAAGCTGGGAGAAGACCTAAATGTTAACCTATAATTAACCAGATTCATCTGACCATGAAGTGTAGGGCTGATGTAGCTTCTGCACCTTGAGATGGAGGAGGTGTCCCAAGATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGTGAGATCAATCTGAGATAAACACAGACTCTGACCTTATGTCCACAGACAGACATACGGACATAGTGATGATTCTAGTACAT
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|6 ): TAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTGGCTGATATATAGCTTGTAATAAGCTGGATAAGAGACTTAAATGCTATTACTGGTACAGACGTACAAAGTCAGGTGCAGTATCTGGACCACATAGTGATGTGTCAAATGAGCAAGTTTGGTTTTCTACTTGTCAAATGGAGAGGAAGGAAATATGTTCAAATGAGAAGTTTGGTTTGTTTTCT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC
Unaligned ( gi|16 ): AATGCTGTCCCTACCCAGAGTCAATGAAGCACAAAATGTAGGTCATCAGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 33 88888888888 1 2222 111 11 1111 1 3333333 33333 22 11 1 2222 1 2 1 1 11 1 1 11 333 2 2 1 22222 2 2 11 2 1 2 2 2 1 1 22 2 888888888 11 22222 55555555555555 555555 111 1 1 2 33 333 11 1 1 33 11 1 111 1 33 1 1 1 2 1 2 22 1 1 1 2 2 11 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 11 1 222 1 222 1 1 1 1 1 1 66666666666 1 111 1 1 11 2222 11 111 33 11 11 11 66666666666666666 55555 22222 11 77777777777777777777777777 111 3333333333 111 1 1 55555 3333 77777777777777 2 1 1 2 2 22 2 2 2 1 2 2 222 11 22 2
lowQualScore : 88 3 88 11 6 3 3 444 0 0 55555555555 6 0 5555 444 1 1 00 4444 3 7 6 7 3 7777777 33333 4 6 00 88 3 6 8888 3 0 5 3 5 88 3 2 5 5 88 555 0 0 3 5 88888 0 0 55 88 0 2 5 0 4 0 2 0 5 5 77 0 000000000 2 88 66666 33333333333333 7 777777 7 7 0 555 3 3 0 6 6 1 1 3 6 88 000 7 7 1 44 1 1 3 7 6 3 7 88 0 99 22 2 0 6 999 1 7 5 6 00 0 3 3 3 3 1 2 22 0 3 11 3 4 3 3 3 55 3 88 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 00 6 44 1 3 7 333 3 333 0 3 1 3 3 1 0 0 0 7 1 3 3 3 1 66666666666 3 7 999 3 3 88 8888 88 333 00 88 99 88 11111111111111111 7 0 22222 00000 33 55555555555555555555555555 777 6 1 7777777777 2 111 0 8 0 33333 2222 1 44444444444444 3 22 0 1 4 88 5 0 0 77 0 2 55 0 0 5 0 0 4 111 88 66 77 0
lowQualScore : .. . .. .. . . . ... . . ........... . . .... ... . . .. .... . . . . . ....... ..... . . .. .. . . .... . . . . . .. . . . . .. ... . . . . ..... . . .. .. . . . . . . . . . . .. . ......... . .. ..... .............. . ...... . . . ... . . . . . . . . . .. ... . . . .. . . . . . . . .. . .. .. . . . ... . . . . .. . . . . . . . .. . . .. . . . . . .. . .. . .......................................................................................... . .. . .. . . . ... . ... . . . . . . . . . . . . . . . ........... . . ... . . .. .... .. ... .. .. .. .. ................. . . ..... ..... .. .......................... ... . . .......... . ... . . . ..... .... . .............. . .. . . . .. . . . .. . . .. . . . . . . ... .. .. .. .
lowQualScore : 33 3 33 77 7 8 8 888 8 8 22222222222 4 2 0000 222 0 0 22 0000 2 3 7 3 3 7777777 33333 0 7 77 33 3 7 3333 3 0 5 0 0 00 0 5 5 5 00 000 0 0 0 5 55555 0 0 55 00 0 5 5 0 0 0 5 0 0 5 55 0 000000000 5 00 55555 55555555555555 3 777777 3 3 7 333 3 3 7 7 7 0 0 3 7 77 000 3 3 0 77 0 0 3 3 7 3 3 33 7 00 00 0 7 7 777 0 3 3 7 33 7 3 3 3 7 0 0 00 7 7 33 3 0 3 7 3 00 3 33 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 77 7 77 0 3 3 333 3 333 7 3 0 3 3 0 7 7 7 3 0 3 3 3 0 00000000000 3 3 333 3 3 33 3333 33 000 77 33 00 66 00000000000000000 3 7 77777 77777 88 22222222222222222222222222 555 7 0 2222222222 0 000 0 8 0 77777 7777 0 33333333333333 7 00 7 0 0 33 5 0 0 55 0 5 55 0 0 0 0 0 0 555 00 55 55 0
consensus : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAAG-TCATTGA-TGCACGAAATGTAGG--GTCAGATGNCAGCATCTNGACCATGAGG-TAGAAG-CGTGTCACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGTGAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTA-CCCCAACATATAA--TCCGCTCTT-AACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTA--GAACTGATTTATTAAAGTGATTTTC-AAAATGACCTGTTCTTTTCTAA-TGCAGGTCTATGATTTGCTTTTTCTGTAT-ACCGTAACA--GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATG-ATATACTGATGT-ACAGACTTTGTATAT-ATAT-ATAGA-TTT-TGT-TCAGA-CACACAGACAGA-CAGCA-CCACACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCAC---ATGACTGA-GGAAATGTCTGATGTTCTGGAAA---TGAATTG-TATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTA-CTAGAT-ACTT-ACATGTATATGTCTTTAATGT------ATGTATATATAC-CAGCAATTAAAC--GTGTGGACC-ACATTCATAG-ATATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCTATCAAGTC-AACTTAT--CAGAGTTTCCGA-AAAACC-AAAAATTTCTCAAT-ATCAG-CATT---GGACTGATGACTTC----AGTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTC----------------C--GAA----TAAA---TTCGTAACTAGC-------A--GTAGCCGT-T-GTT-CAGT-GTTGTATAATTA-----CCCAAAAGC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
Reference ( family-1055 ) : NAGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAAGGTCATNGAATGCACGAAATTTAGG--GTCAGATNNCAGCANCTNGACCATGAGG-TAGAAG-CGTGTCACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGTGAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCTGG-TTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGAAGGGATTATCAAACACACAAATGCGTCCGGTTGT-GGA-ACTAGGGATTATCAGGGATTANGAAGNCACAGGAAGCTCCCAATATTTTACCCCCAACATATAAAGTCCGCTCTTAAACTTCTCAAAAACTACATAATCANACTTTATTATCCTTACAATCATGCTNTAATTTGTNATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGGAACTGATTTATTAAAGTGATCTTTCANNATGACCTGCTCTTTTCTAA-TGCAGGTNTATGATTTGCTTTTTCTGTATAACCGTAACAGTGTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATG-ATATACTGATGTAANAGACTTNNTATGTAATATNATAGA-TTTNTGT-TCAGATCACACAGACAGAGCAGCANNCACACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACNGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCAC---ATGACTGA-GGAAATGTCTGATGTTCTGGAAA---TGAACTG-TANGAGC-CAAAATCAA-ATTCCTACTGNCGTGGTGTACACCTCCAGTTACTAACTCTCTATATCNCATTTA-CTAGAT-ACTT-ACATGTATATGTCTNTAATGTATGTACATGTATATATAC-CAGCAATTAAAC--NTGTGGACC-ACATTCATAG-ATATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCTATCAAGTC-GACTTAT--CAGAGTTTCCG--AAAACC-AAAAATTTCTCAGTCATCAGACATTAAAGGACTGATGGCTTT--TGAGTGTGTTCTGCGCGGTCCGGAACAAATTCTA--TCAGTC----------------C--GAA----TAAA---TTCGTAACTAAC-------A--GTAGCCGT-T-GTT-CAGT-GTTGTATAATTACCCNCCCCAAAAGCAAAAAACAAANAAAAAACCNGTAAGTCTAAGAGCCTATANNTAAACGANTAACTCNAAANTATGTAATCA-TACTTTTTTCTAAAGTG-TTGGAG--TCTGGCAAAGCTTTTCATTTTACAA-CCTGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAA-CG-TTTTTGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATC
gi|1 : AGGCAAAGTTTTTGTTGAAATATCAGCTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GAGTCAATGAAAGTCAT-GAATGTA-------------GTCAGATGCCAGCATCTCGACCATGAGGGTAGAA--CGTGTCACTAGCAAGCA-G-GT--T----GGTAATTTTGTTTGGCTTC-----AGGTGAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGA--TTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CAC-AAC--ATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAA-TCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGA--ATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGAC-AAAATAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAG-AAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCT-----TGG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTA--CCCAACATATAA--TCCGCTCTT--ACTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATC-TGGA-CCATGTCAAAAACATAATGTTACAC-ACTGCTTATCAAACTCATATCCATGTA--GGACTGATTTATTAAAGTGATTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAA-AGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATAT-ATAGATTTTTTGTGTCAGA-CACACAGACAGA-CAGCACCAACACCAATGT-GTGT--GT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTTAGT--------ATGTATATATACGCAGC-ATTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAGAGTTTCCGAAA----ACCAAC--AATTTCTATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAAAATTTCTCAAT---------TT---GGACTGATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTC----------------CCGAAA----TAAA---TTCGTAA-TAGC-------A--GTAGCTGT-TGGTT-CA-T-GTTGTATAATTA-----CGCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACAAATAACTCCAAAA-ATGT-ATCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|12 : cAGAGTTTCCG--AAAACC--AAAATTTTTCA---ATCAGACATTAAAAGAC--ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTT----------------C--AAA----CAAA---TTC
gi|13 : C-------A--GAAGCCAT-T-GTT-CAGT-GTTGTATAATTACCCCCCCCAAAA-CAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGTtacaacaaaataactgt
gi|15 : CAAGATGGTCA----GAACTA-----AATGAAG-TCATTGA-TGCACGAAATTTAGG---TCAGATTGCAGCAACTGGACCATGAGT-TAGATG-TATGCCAC
gi|16 : AATGCT-GTCCCTACCCAGAGTCAATGAA-----------GCACAAAATGTAGGTCATCAGAT
gi|17 : GAGTTTCCG--AAAACC--AAAATTTTTCAATCA
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAAG-----------CATGAAATGTAGG---TCAGATG-CAGCATCTCGACCATGAGG-TAGAAG-CGTGTCACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGTGAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCTGG-TTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTA-CCCCAACATATAAA-TCCGCTCTT-AACTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GGAACTGATTTATTAAAGTGATTTTTCAAAAT-ACCTGTTCTTTTCTAA-TGCAGGTCTATGATTTGCTTTTTCTGTAT-ACCGTAACA--GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATG-ATATACTGATGT-ACAGA-TTTGTATATAATATTATAGA-TTT-TGT-TCAGA-CACACAGACAGA-CAGCAAACACACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAA----ATACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCAC---ATGACTGA-GGAAATGTCTGATGTTCTGGAAA---TGAATTG-TATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTA-CTAGAT-ACTT-ACATGTATATGTCTTTAA-GT------ATGTATATATAC-CAGCAATTAAAC--GTGTGGACC-ACATTCATAG-ATATT--GCAGAGTT
gi|3 : TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTACCCC-AATATATAA-GTCTGCTCTTAA-CTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATC-TGATCTTGGACCCATGTC-AAAACATAACGTTACACAACTGCTTATCAAACTCATATACATGTAC-GAACTGATTTATTAAAGTGATCTT--ACTATGATTTGCT-TTTTCT--------GTATA---------------------CTGTAACA--GTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATG-ATATACTGATGTAAAAGACTTATTATGT-ATA-AATAGA-TTTATGT-TCAGATCACACAGACAGAGCAGCA-CCACACCAATGTAGTGTCGATACATC
gi|3 : ggAAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCAC---ATGACTGA-AGAAATGTCTGATGTTCTGGAAA---TGAACTG-TAAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTC--TATCACATTTA-CTAGAT-ACTT-ACATGTATATGTCTAT-ATGTATGTACATGTATATATAC-CAGCAATTAAAC--CTGTGGACC-ACATTCATAG-ATATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCTATC-AGTC-AACTTAT--CAAAGTTTCTGA-AAAACT-AAAAATTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|3 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtAACAATTTCTA--TCAGTCAACTTATCAAAGTTTCT--GAAAAACTAAAAATTTCGTAACTAGC-------AACGTAGCTGTAT-GTTTCAGTTGTTGTATAATTA-----CCAAAAAGC--AAAACAAACAA-----CGG------TAAGAGCCTATATATAAACAACTAACTC-AAAATATGTAATCA-TACTTTTTTCTAAAGTG-TTGGAG--TCTGGCAAAGCTTTTCATTTTACAA-CCTGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAA-CG-TTTTTGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATCgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|4 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccGACGAG--TTTTATTGATACATCA-CTTGTAATAAGCTGGGAGAAGACCTAAATG--TTAA----CCTATAATTAACCAGATTCA-------TC--TGA--CCATGAAGTGTAGG--G-CTGATGT-AGCTTCTGCACCTTGAGA-TGGAGGAGGTGTC-C---CAAG-ATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGTGAGATCAATCTGAGA-----TAAA-----CACAGACTCTGACCTTA-TGTCCACAGA----C----AGACATA-CGGACA
gi|9 : aactgggcataattgaaaaacggtacattttcacaccacattctttctgattatatataaataacttttcatgtagccttgtaatttacatgcacaatccacagtgcaccttgcaaactgattgttcacacctaaatatcgcaatcacagtttgctctttacgtgttttagatatttctaatcagaaggcaccttcgtgttaattttacgatgcaatgttgatagatataaatgcaataaacacaacacttggtggcgAGATTTTACAGAACAGTACCAATTAAATCTCTG--AAGTT----TTACTGCAGAGTTTCCG--AAAACC-AACAATTTCTC-----TCAGTCATTT--GGATTGATGACTT----GAGTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTC----------------C--GAA----TAAA---ACAGTAACTAACAGTACTGA--GTAGCTGT-T-GTT-CATT-GTTGTAAAAtagtgatgattctagtacat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|6 ): TAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTGGCTGATATATAGCTTGTAATAAGCTGGATAAGAGACTTAAATGCTATTACTGGTACAGACGTACAAAGTCAGGTGCAGTATCTGGACCACATAGTGATGTGTCAAATGAGCAAGTTTGGTTTTCTACTTGTCAAATGGAGAGGAAGGAAATATGTTCAAATGAGAAGTTTGGTTTGTTTTCT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC
Alignments
lowQualScore : 11 1 11 22 55555555555 11111 1 1111 11111 1 22222222 11 22222 1 22 11 1 2222 11 1 1 1 11 1 11 1 222 1 1 1 11 1 1 1 11 1 1 1 1 1 1 1 11 1 333333333 11 666666666666666666666 333333 11 1 1 1 1 11 1 1 2 1 111 1111111 1 1 1 1 1 1 1 1 1 2222 1 1 1 1 1 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777 222 22 11 1 222 1 222 1 1 1 1 1 1 44444 11 1 11 1 1 11 2222 11 111 111 11 111 66666666666666666666 11111 222222 222222222222 3333333333 1 1 1 1 2222 11 44444444444444 1 1 1 1 11 1 1 1 1 1 1 222 11 11 1
lowQualScore : 0 88 3 88 00 6 3 3 444 0 0 99999999999 7 66666 6 1 99 4444 44444 777 0 88888888 3 11 55555 0 0 1 6 00 0 88 3 6 8888 44 5 5 1 5 88 1 1 5 88 5 000 5 5 1 5 88 5 5 5 22 88 5 1 5 5 1 5 1 5 5 5 77 5 666666666 1 88 000000000000000000000 7 888888 7 7 0 44 3 3 6 6 6 3 3 7 7 7 44 3 7 6 3 7 6 3 6 666 7 5555555 3 3 3 3 3 3 2 3 3 2222 3 3 3 3 3 3 88 7 44444444444444444444444444444444444444444444444444444444444444444444444444 111 7 00 6 44 3 7 333 3 333 3 3 0 3 7 3 3 3 66666 88 3 7 88 3 3 88 8888 88 333 999 33 7 7 666 11111111111111111111 888 8 77777 777777 00 8 9 888888888888 7 6 7777777777 2 0 0 0 8 0 8888 0 88 77777777777777 3 0 6 7 5 5 5 88 5 1 22 5 5 5 5 5 1 111 88 22 88 5
lowQualScore : . .. . .. .. . . . ... . . ........... . ..... . . .. .... ..... ... . ........ . .. ..... . . . . .. . .. . . .... .. . . . . .. . . . .. . ... . . . . .. . . . .. .. . . . . . . . . . . .. . ......... . .. ..................... . ...... . . . .. . . . . . . . . . . .. . . . . . . . . ... . ....... . . . . . . . . . .... . . . . . . .. . .......................................................................... ... . .. . .. . . ... . ... . . . . . . . . ..... .. . . .. . . .. .... .. ... ... .. . . ... .................... ... . ..... ...... .. . . ............ . . .......... . . . . . . .... . .. .............. . . . . . . . .. . . .. . . . . . . ... .. .. .. .
lowQualScore : 7 33 3 33 77 7 8 8 888 8 8 88888888888 8 33333 6 0 44 8888 22222 222 0 55555555 5 22 00000 2 0 0 7 77 7 33 3 7 3333 00 0 5 0 0 00 0 0 5 00 5 555 5 5 0 5 00 0 0 0 00 00 5 0 5 5 0 0 0 5 0 5 55 5 555555555 0 00 000000000000000000000 3 333333 3 3 7 77 3 3 7 7 7 3 3 3 3 3 77 3 3 7 3 3 7 3 7 333 3 0000000 3 3 3 3 3 3 0 3 3 7777 3 3 3 3 3 3 33 3 00000000000000000000000000000000000000000000000000000000000000000000000000 000 3 77 7 77 3 3 333 3 333 3 3 7 3 3 3 3 3 00000 33 3 3 33 3 3 33 3333 33 000 777 88 3 3 555 00000000000000000000 888 6 88888 000000 55 8 2 000000000000 0 7 2222222222 0 0 0 0 8 0 3333 7 33 00000000000000 3 7 7 3 5 5 5 00 0 0 00 0 5 0 0 5 0 555 00 00 00 5
consensus : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGATG-CAGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTA---A-GT--ATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCTATCAAGTCAA-CTTAT--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAA-TATCAGTCATT---GGACTG-ATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
Reference ( family-1055 ) : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGATGCACGAAATGTAGG--GTCAGATGNCAGCATCTNGACCATGAGG-TAGAAG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACA-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTA---ATGT--ATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCTATCAAGTCAA-CTTAT--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAA-TATCAG-CATT---GGACTG-ATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAGC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|1 : AGGCAAAGTTTTTGTTGAAATATCAGCTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GAGTCAATGAAAGTCAT---------GAATGTAG----TCAGATGCCAGCATCTCGACCATGAGGGTAGAA--CGTGTC--ACTAGCAAGCA-G-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGA--TTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CACAA--CA-TCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAAT-CAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAA--TTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGACAAAA-TAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAGAAA-TCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCTT-----GG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTACCC-AACATAT-AA-TCCGCTCTTA-CTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATCT-GGACC-ATGTCAAAAACATAATGTTACACA-CTGCTTATCAAACTCATATCCATGTA-GGACTGATTTATTAAAGTGA-TTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAAAGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATA-TATAGATTT-TTTGTGTCAGA-CACACAGACAGA-CAGC-ACCAACACCAATGT-GTGT--GT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTTA-----GT--ATGTATATATACGCAGCA-TTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAGAGTTTCCGAAA----ACCAAC--AATTTCTATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAAAATTTCTCAA-T--------TT---GGACTG-ATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTCCCGAAATAAATTCGTAA-TAGC-------A--GTAGCTGT-TGGTT-CA-T-GTTGTATAATTA----CGCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACAAATAACTCCAAAA-ATGTA-TCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|12 : cAGAGTTTCCG-AAAACC---AAAATTTTTCA---ATCAGACATTAAAAGAC---ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTTC--AAACAAATTC
gi|13 : C-------A--GAAGCCAT-TG-TT-CAGT-GTTGTATAATTACCCCCCCCAAAACAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGTtacaacaaaataactgt
gi|15 : CAAGATGGTCA----GAACTA-----AATGAA-GTCATTGATGCACGAAATTTA-G--GTCAGATTGCAGCAACTGGACCATGAGT-TAGATG-TATGCC--AC
gi|16 : AATGCT-GTCCCTACCCAGAGTCAATGAA----------GCACAAAATGTAGGTCATCAGAT
gi|17 : GAGTTTCCG-AAAACC---AAAATTTTTCAA-T
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-G---------CATGAAATGTAGG---TCAGATG-CAGCATCTCGACCATGAGG-TAGAAG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCT-GGTTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATATAAA-TCCGCTCTTAACTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTAGGAACTGATTTATTAAAGTGATTTTTCAAAA-T-ACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACA-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGA-TTTGTATATAATATTATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGCAAACA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAA----ATACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTA---A-GT--ATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAGAGTTca
gi|3 : TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTACCCCAATATAT-AAGTCTGCTCTTAACTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGAACTGATTTATTAAAGTGA-TCTT-ACTA-TGATTTG--CTTT---------------------------TTCTGTATA-CTGTAACA-GTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATGA-TATACTGATGTAAAAGACTTATTATGT-ATA-AATAGATTTAT--GT-TCAGATCACACAGACAGAGCAGC-ACCA-CACCAATGTAGTGTCGATACATC
gi|3 : ggAAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCACA---TGACTGAAG-AAATGTCTGATGTTCTGGAAA---TGAACTGT-AAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTC--TATCACATTTAC-TAGATA-CTTA-CATGTATATGTCTATATGTATGTACATGTATATATAC-CAGCAATTAAAC--CTGTGGACCA-CATTCATAGAT-ATT--GCAGAGTTTCCGAAA----ACCAAC--AATTTCTATC-AGTCAA-CTTAT--CAAAGTTTCTGAAAAACT--AAAAATTTCGTAACTAGCAA-CGTA---G--CTGTATG-TTTCA----GT-TGTTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|3 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgt--CAGAGTTTCCGAAAA-CC--AACAATTTCT-----ATCAGTCA-------ACTT-AT-----CA----AAGT-TTCT----------GAA-AAA--CTA------------AA-AATTTCGTAACTAGC-------AACGTAGCTGTATG-TTTCAGTTGTTGTATAATTA----CCAAAAAGC--AAAACAAACAA-----CGG------TAAGAGCCTATATATAAACAACTAACTC-AAAATATGTAATCAT-ACTTTTTTCTAAAGTGTT-GGAGTCT--GGCAAAGCTTTTCATTTTACAACC-TGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAAC-GTTTT-TGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATCtaattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|4 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgGACGAG--TTTTATTGATACATCA-CTTGTAATAAGCTGGGAGAAGACCTAAATG--TTAA----CCTATAATTAACCAGATTCA-------TC--TGAC-CATGAAGTGTAGG--G-CTGATGT-AGCTTCTGCACCTTGAGA-TGGAGGAGGTGTC---C---CAAG-ATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGT-GAGATCAATCTGAGA-----TAAA-----CACAGACTCTGACCTTA-TGTCCACAGA----C----AGACATA-CGGACA
gi|6 : aactgggcataattgaaaaacggtacattttcacaccacattctttctgattatatataaataacttttcatgtagccttgtaatttacatgcacaatccacagtgcaccttgcaaactgattgttcacacctaaatatcgcaatcacagtttgctctttacgtgttttagatatttctaatcagaaggcaccttcgtgttaattttacgatgcaatgttgatagatataaatgcaataaacacaacacttggtggcgTTACTGGTACA-GACGTACAAA--GTCAGGTG-CAGTATCTGGACCAC---A-TAGTGA-TGTGTCAAATGAGCAAGTTTG-GT--T---------TTCTACTTG---TC-----AAATGGAGAGtagtgatgattctagtacat
gi|9 : taaacacattaaatccagcatctggtgcagacaagtttggctgatatatagcttgtaataagctggataagagacttaaatgctaAGATTTTACAGAACAGTACCAATTAAATCTCTG--AAGTT----TTACTGCAGAGTTTCCGAAAA-CC--AACAATTTCTC-----TCAGTCATTT--GGATTG-ATGACTTGA----GTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTCC--GAATAAAACAGTAACTAACAGTACTGA--GTAGCTGT-TG-TT-CATT-GTTGTAAAAgaaggaaatatgttcaaatgagaagtttggtttgttttct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC
Alignments
lowQualScore : 11 1 11 22 66666666666 11111 1111 11111 1 22222222 11 22222 1 22 11 1 2222 11 1 1 1 11 1 11 1 222 1 1 1 11 1 1 1 11 1 1 1 1 1 1 1 11 1 333333333 11 666666666666666666666 333333 11 1 1 1 1 11 1 1 2 1 111 1111111 1 11 1 1 1 1 1 1 1 2222 1 1 1 1 1 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777 222 22 11 1 222 1 222 1 1 1 1 1 1 222 222222222 11 1 222222 1 111 2222 2222 5555555555555555555 1 1 222 44444444444444444 222222 333333 222222222222 3333333333 1 1 1 1 2222 11 44444444444444 1 1 1 1 11 1 1 1 1 1 1 222 11 11 1
lowQualScore : 0 88 3 88 00 6 3 3 444 0 0 22222222222 1 99999 6 8 99 4444 44444 777 0 88888888 3 11 55555 0 0 1 6 00 0 88 3 6 8888 44 5 5 1 5 88 1 1 5 88 5 000 5 5 1 5 88 5 5 5 22 88 5 1 5 5 1 5 1 5 5 5 77 5 666666666 1 88 000000000000000000000 7 888888 7 7 0 44 3 3 6 6 6 3 3 7 7 7 44 3 7 6 3 7 6 3 6 666 7 5555555 3 44 3 3 3 3 2 3 3 2222 3 3 3 3 3 3 88 7 44444444444444444444444444444444444444444444444444444444444444444444444444 111 7 00 6 44 3 7 333 3 333 3 3 0 3 7 6 3 3 3 7 7 111 777777777 88 6 3 666666 0 0 777 4 8888 1111 7 7777777777777777777 0 0 111 0 11111111111111111 55 33 444444 2 000000 00 8 9 888888888888 7 6 7777777777 2 0 0 0 8 0 8888 88 77777777777777 3 0 6 7 5 5 5 88 5 1 22 5 5 5 5 5 1 111 88 22 88 5
lowQualScore : . .. . .. .. . . . ... . . ........... . ..... . . .. .... ..... ... . ........ . .. ..... . . . . .. . .. . . .... .. . . . . .. . . . .. . ... . . . . .. . . . .. .. . . . . . . . . . . .. . ......... . .. ..................... . ...... . . . .. . . . . . . . . . . .. . . . . . . . . ... . ....... . .. . . . . . . . .... . . . . . . .. . .......................................................................... ... . .. . .. . . ... . ... . . . . . . . . . . . ... ......... .. . . ...... . . ... . .... .... . ................... . . ... . ................. .. .. ...... . ...... .. . . ............ . . .......... . . . . . . .... .. .............. . . . . . . . .. . . .. . . . . . . ... .. .. .. .
lowQualScore : 7 33 3 33 77 7 8 8 888 8 8 11111111111 7 33333 7 0 44 0000 22222 222 0 55555555 5 22 00000 2 0 0 7 77 7 33 3 7 3333 00 0 5 0 0 00 0 0 5 00 5 555 5 5 0 5 00 0 0 0 00 00 5 0 5 5 0 0 0 5 0 5 55 5 555555555 0 00 000000000000000000000 3 333333 3 3 7 77 3 3 7 7 7 3 3 3 3 3 77 3 3 7 3 3 7 3 7 333 3 0000000 3 00 3 3 3 3 0 3 3 7777 3 3 3 3 3 3 33 3 00000000000000000000000000000000000000000000000000000000000000000000000000 000 3 77 7 77 3 3 333 3 333 3 3 7 3 3 7 3 3 3 3 3 777 333333333 33 7 3 000000 0 2 555 7 3333 0000 3 3333333333333333333 6 6 666 6 99999999999999999 88 22 888888 5 222222 55 8 2 000000000000 0 7 2222222222 0 0 0 0 8 0 3333 33 00000000000000 3 7 7 3 5 5 5 00 0 0 00 0 5 0 0 5 0 555 00 00 00 5
consensus : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTA-GTATGTATATATAC-CAGCA-TTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
Reference ( family-1055 ) : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTAAGTATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGAAA----ACCAAC--AATTTCTATCAAGTCAA-CTTAT--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|1 : AGGCAAAGTTTTTGTTGAAATATCAGCTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GAGTCAATGAAAGTCAT---------GAATGTAG----TCAGA-TGCCAGCATCTCGACCATGAGGGTAGAA--CGTGTC--ACTAGCAAGCA-G-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGA--TTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CACAA--CA-TCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAAT-CAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAA--TTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGACAAAA-TAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAGAAA-TCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCTT-----GG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTACCC-AACATAT-AA-TCCGCTCTTA-CTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATCT-GGACC-ATGTCAAAAACATAATGTTACACA-CTGCTTATCAAACTCATATCCATGTA-GGACTGATTTATTAAAGTGA-TTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAAAGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATA-TATAGATTT-TTTGTGTCAGA-CACACAGACAGA-CAGC-ACCAACACCAATGT-GTGT--GT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTTA-GTATGTATATATACGCAGCA-TTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAG-AGTT---TCCGAAA----ACCAAC--AATTTCTATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAAAATTTCTCAAT--------TT---GGACTGATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTCCCGAAATAAATTCGTAA-TAGC-------A--GTAGCTGT-TGGTT-CA-T-GTTGTATAATTA----CGCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACAAATAACTCCAAAA-ATGTA-TCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|12 : cAGAGTTTCCG-AAAACC---AAAATTTTTCA--ATCAGACATTAAAAGAC--ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTTC--AAACAAATTC
gi|13 : C-------A--GAAGCCAT-TG-TT-CAGT-GTTGTATAATTACCCCCCCCAAAACAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGTtacaacaaaataactgt
gi|15 : CAAGATGGTCA----GAACTA-----AATGAA-GTCATTGATGCACGAAATTTA-G--GTCAGATTGC-AGCAACTGGACCATGAGT-TAGATG-TATGCC--AC
gi|16 : AATGCT-GTCCCTACCCAGAGTCAATGAA----------GCACAAAATGTAGGTCATCAGA-T
gi|17 : GAGTTTCCG-AAAACC---AAAATTTTTCAAT
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-G---------CATGAAATGTAGG---TCAGA-TGC-AGCATCTCGACCATGAGG-TAGAAG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCT-GGTTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATATAAA-TCCGCTCTTAACTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTAGGAACTGATTTATTAAAGTGATTTTTCAAAA-T-ACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACA-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGA-TTTGTATATAATATTATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGCAAACA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAA----ATACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTAAGTATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---ca
gi|3 : TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTACCCCAATATAT-AAGTCTGCTCTTAACTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGAACTGATTTATTAAAGTGA-TCTT-ACTA-TGATTTG--CTTT---------------------------TTCTGTATA-CTGTAACA-GTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATGA-TATACTGATGTAAAAGACTTATTATGT-ATA-AATAGATTTAT--GT-TCAGATCACACAGACAGAGCAGC-ACCA-CACCAATGTAGTGTCGATACATC
gi|3 : ggAAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCACA---TGACTGAAG-AAATGTCTGATGTTCTGGAAA---TGAACTGT-AAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTCT--ATC------------ACA-TTTA-C---TAGATA-CTT---ACATGTATATGT---------CTATAT--GTATG---TA-CATGTATATAT-AC----CAGCAATTAAACCTGTGG----ACCA-C--A--TTC-AT--AGATA---TTG---CAGAGTTTCCGAAAA-CC--AACAATTTCT----ATCAGTCA-------ACTTAT-----CA----AAGT-TTCT----------GAA-AAA--CTA------------AA-AATTTCGTAACTAGC-------AACGTAGCTGTATG-TTTCAGTTGTTGTATAATTA----CCAAAAAGC--AAAACAAACAA-----CGG------TAAGAGCCTATATATAAACAACTAACTC-AAAATATGTAATCAT-ACTTTTTTCTAAAGTGTT-GGAGTCT--GGCAAAGCTTTTCATTTTACAACC-TGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAAC-GTTTT-TGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|4 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtGACGAG--TTTTATTGATACATCA-CTTGTAATAAGCTGGGAGAAGACCTAAATG--TTAA----CCTATAATTAACCAGATTCA-------TC--TGAC-CATGAAGTGTAGG--G-CTGA-TGT-AGCTTCTGCACCTTGAGA-TGGAGGAGGTGTC---C---CAAG-ATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGT-GAGATCAATCTGAGA-----TAAA-----CACAGACTCTGACCTTA-TGTCCACAGA----C----AGACATA-CGGACA
gi|6 : aactgggcataattgaaaaacggtacattttcacaccacattctttctgattatatataaataacttttcatgtagccttgtaatttacatgcacaatccacagtgcaccttgcaaactgattgttcacacctaaatatcgcaatcacagtttgctctttacgtgttttagatatttctaatcagaaggcaccttcgtgttaattttacgatgcaatgttgatagatataaatgcaataaacacaacacttggtggcgGACGTACAAA---------GTCAGG-TGC-AGTATCTGGACCAC---A-TAGTGA-TGTGTCAAATGAGCAAGTTTG-GT--T---------TTCTACTTG---TC-----AAATGGAGAGtagtgatgattctagtacat
gi|9 : taaacacattaaatccagcatctggtgcagacaagtttggctgatatatagcttgtaataagctggataagagacttaaatgctattactggtacaAG-ATTT---TACAGAACAGTACCAATTAAATCTCTG--AAGTT----TTACTGCAGAGTTTCCGAAAA-CC--AACAATTTCTC----TCAGTCATTT--GGATTGATGACTTGA----GTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTCC--GAATAAAACAGTAACTAACAGTACTGA--GTAGCTGT-TG-TT-CATT-GTTGTAAAAgaaggaaatatgttcaaatgagaagtttggtttgttttct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC
Alignments
lowQualScore : 11 1 11 22 66666666666 11111 1111 11111 1 22222222 11 22222 1 22 11 1 2222 11 1 1 1 11 1 11 1 222 1 1 1 11 1 1 1 11 1 1 1 1 1 1 1 11 1 333333333 11 666666666666666666666 333333 11 1 1 1 1 11 1 1 2 1 111 1111111 1 11 1 1 1 1 1 1 1 2222 1 1 1 1 1 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777 222 22 11 1 222 1 222 1 1 1 1 1 1 111 222222222222222222 1 222222 1 111 2222 2222 3333333333333 222 1 1 222 44444444444444444 222222 333333 222222222222 3333333333 1 1 1 1 2222 11 44444444444444 1 1 1 1 11 1 1 1 1 1 1 222 11 11 1
lowQualScore : 0 88 3 88 00 6 3 3 444 0 0 22222222222 1 99999 6 8 99 4444 44444 777 0 88888888 3 11 55555 0 0 1 6 00 0 88 3 6 8888 44 5 5 1 5 88 1 1 5 88 5 000 5 5 1 5 88 5 5 5 22 88 5 1 5 5 1 5 1 5 5 5 77 5 666666666 1 88 000000000000000000000 7 888888 7 7 0 44 3 3 6 6 6 3 3 7 7 7 44 3 7 6 3 7 6 3 6 666 7 5555555 3 44 3 3 3 3 2 3 3 2222 3 3 3 3 3 3 88 7 44444444444444444444444444444444444444444444444444444444444444444444444444 111 7 00 6 44 3 7 333 3 333 3 3 0 3 7 3 3 3 999 777777777777777777 6 3 666666 0 0 777 1 8888 1111 7 8888888888888 555 0 0 111 0 11111111111111111 55 33 444444 2 000000 00 8 9 888888888888 7 6 7777777777 2 0 0 0 8 0 8888 88 77777777777777 3 0 6 7 5 5 5 88 5 1 22 5 5 5 5 5 1 111 88 22 88 5
lowQualScore : . .. . .. .. . . . ... . . ........... . ..... . . .. .... ..... ... . ........ . .. ..... . . . . .. . .. . . .... .. . . . . .. . . . .. . ... . . . . .. . . . .. .. . . . . . . . . . . .. . ......... . .. ..................... . ...... . . . .. . . . . . . . . . . .. . . . . . . . . ... . ....... . .. . . . . . . . .... . . . . . . .. . .......................................................................... ... . .. . .. . . ... . ... . . . . . . . . ... .................. . . ...... . . ... . .... .... . ............. ... . . ... . ................. .. .. ...... . ...... .. . . ............ . . .......... . . . . . . .... .. .............. . . . . . . . .. . . .. . . . . . . ... .. .. .. .
lowQualScore : 7 33 3 33 77 7 8 8 888 8 8 11111111111 7 33333 7 0 44 0000 22222 222 0 55555555 5 22 00000 2 0 0 7 77 7 33 3 7 3333 00 0 5 0 0 00 0 0 5 00 5 555 5 5 0 5 00 0 0 0 00 00 5 0 5 5 0 0 0 5 0 5 55 5 555555555 0 00 000000000000000000000 3 333333 3 3 7 77 3 3 7 7 7 3 3 3 3 3 77 3 3 7 3 3 7 3 7 333 3 0000000 3 00 3 3 3 3 0 3 3 7777 3 3 3 3 3 3 33 3 00000000000000000000000000000000000000000000000000000000000000000000000000 000 3 77 7 77 3 3 333 3 333 3 3 7 3 3 3 3 3 777 777777777777777777 7 3 000000 0 2 555 0 3333 0000 3 7777777777777 000 6 6 666 6 99999999999999999 88 22 888888 5 222222 55 8 2 000000000000 0 7 2222222222 0 0 0 0 8 0 3333 33 00000000000000 3 7 7 3 5 5 5 00 0 0 00 0 5 0 0 5 0 555 00 00 00 5
consensus : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
Reference ( family-1055 ) : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|1 : AGGCAAAGTTTTTGTTGAAATATCAGCTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GAGTCAATGAAAGTCAT---------GAATGTAG----TCAGA-TGCCAGCATCTCGACCATGAGGGTAGAA--CGTGTC--ACTAGCAAGCA-G-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGA--TTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CACAA--CA-TCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAAT-CAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAA--TTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGACAAAA-TAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAGAAA-TCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCTT-----GG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTACCC-AACATAT-AA-TCCGCTCTTA-CTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATCT-GGACC-ATGTCAAAAACATAATGTTACACA-CTGCTTATCAAACTCATATCCATGTA-GGACTGATTTATTAAAGTGA-TTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAAAGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATA-TATAGATTT-TTTGTGTCAGA-CACACAGACAGA-CAGC-ACCAACACCAATGT-GTGT--GT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTT-AGTATGTATATATACGCAGC-ATTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAG-AGTT---TCCGAAA----ACCAAC--AATTTCTATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAAAATTTCTCAAT--------TT---GGACTGATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTCCCGAAATAAATTCGTAA-TAGC-------A--GTAGCTGT-TGGTT-CA-T-GTTGTATAATTA----CGCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACAAATAACTCCAAAA-ATGTA-TCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|12 : cAGAGTTTCCG-AAAACC---AAAATTTTTCA--ATCAGACATTAAAAGAC--ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTTC--AAACAAATTC
gi|13 : C-------A--GAAGCCAT-TG-TT-CAGT-GTTGTATAATTACCCCCCCCAAAACAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGTtacaacaaaataactgt
gi|15 : CAAGATGGTCA----GAACTA-----AATGAA-GTCATTGATGCACGAAATTTA-G--GTCAGATTGC-AGCAACTGGACCATGAGT-TAGATG-TATGCC--AC
gi|16 : AATGCT-GTCCCTACCCAGAGTCAATGAA----------GCACAAAATGTAGGTCATCAGA-T
gi|17 : GAGTTTCCG-AAAACC---AAAATTTTTCAAT
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-G---------CATGAAATGTAGG---TCAGA-TGC-AGCATCTCGACCATGAGG-TAGAAG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCT-GGTTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATATAAA-TCCGCTCTTAACTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTAGGAACTGATTTATTAAAGTGATTTTTCAAAA-T-ACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACA-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGA-TTTGTATATAATATTATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGCAAACA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAA----ATACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTAAGTATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---ca
gi|3 : TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTACCCCAATATAT-AAGTCTGCTCTTAACTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGAACTGATTTATTAAAGTGA-TCTT-ACTA-TGATTTG--CTTT---------------------------TTCTGTATA-CTGTAACA-GTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATGA-TATACTGATGTAAAAGACTTATTATGT-ATA-AATAGATTTAT--GT-TCAGATCACACAGACAGAGCAGC-ACCA-CACCAATGTAGTGTCGATACATC
gi|3 : ggAAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCACA---TGACTGAAG-AAATGTCTGATGTTCTGGAAA---TGAACTGT-AAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTCTAT--CACATTTAC-TAGATA-CTTA-CATGTATATGTCT----ATATGTATGTA---------------C--ATGT------------ATATAT-AC----CAGCAATTAAACCTGTGG----ACCA-C--A--TTC-AT-A-GATA---TTGC---AGAGTTTCCGAAAA-CC--AACAATTTCT----ATCAGTCA-------ACTTAT-----CA----AAGT-TTCT----------GAA-AAA--CTA------------AA-AATTTCGTAACTAGC-------AACGTAGCTGTATG-TTTCAGTTGTTGTATAATTA----CCAAAAAGC--AAAACAAACAA-----CGG------TAAGAGCCTATATATAAACAACTAACTC-AAAATATGTAATCAT-ACTTTTTTCTAAAGTGTT-GGAGTCT--GGCAAAGCTTTTCATTTTACAACC-TGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAAC-GTTTT-TGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|4 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtGACGAG--TTTTATTGATACATCA-CTTGTAATAAGCTGGGAGAAGACCTAAATG--TTAA----CCTATAATTAACCAGATTCA-------TC--TGAC-CATGAAGTGTAGG--G-CTGA-TGT-AGCTTCTGCACCTTGAGA-TGGAGGAGGTGTC---C---CAAG-ATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGT-GAGATCAATCTGAGA-----TAAA-----CACAGACTCTGACCTTA-TGTCCACAGA----C----AGACATA-CGGACA
gi|6 : aactgggcataattgaaaaacggtacattttcacaccacattctttctgattatatataaataacttttcatgtagccttgtaatttacatgcacaatccacagtgcaccttgcaaactgattgttcacacctaaatatcgcaatcacagtttgctctttacgtgttttagatatttctaatcagaaggcaccttcgtgttaattttacgatgcaatgttgatagatataaatgcaataaacacaacacttggtggcgGACGTACAAA---------GTCAGG-TGC-AGTATCTGGACCAC---A-TAGTGA-TGTGTCAAATGAGCAAGTTTG-GT--T---------TTCTACTTG---TC-----AAATGGAGAGtagtgatgattctagtacat
gi|9 : taaacacattaaatccagcatctggtgcagacaagtttggctgatatatagcttgtaataagctggataagagacttaaatgctattactggtacaAG-ATTT---TACAGAACAGTACCAATTAAATCTCTG--AAGTT----TTACTGCAGAGTTTCCGAAAA-CC--AACAATTTCTC----TCAGTCATTT--GGATTGATGACTTGA----GTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTCC--GAATAAAACAGTAACTAACAGTACTGA--GTAGCTGT-TG-TT-CATT-GTTGTAAAAgaaggaaatatgttcaaatgagaagtttggtttgttttct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC
Alignments
lowQualScore : 11 1 11 22 66666666666 11111 1111 11111 1 22222222 11 22222 1 22 11 1 2222 11 1 1 1 11 1 11 1 222 1 1 1 11 1 1 1 11 1 1 1 1 1 1 1 11 1 333333333 11 666666666666666666666 333333 11 1 1 1 1 11 1 1 2 1 111 1111111 1 11 1 1 1 1 1 1 1 2222 1 1 1 1 1 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777 222 22 11 1 222 1 222 1 1 1 1 1 1 111 222222222222222222 1 222222 1 111 2222 2222 3333333333333 222 1 1 222 44444444444444444 222222 333333 222222222222 3333333333 1 1 1 1 2222 11 44444444444444 1 1 1 1 11 1 1 1 1 1 1 222 11 11 1
lowQualScore : 0 88 3 88 00 6 3 3 444 0 0 22222222222 1 99999 6 8 99 4444 44444 777 0 88888888 3 11 55555 0 0 1 6 00 0 88 3 6 8888 44 5 5 1 5 88 1 1 5 88 5 000 5 5 1 5 88 5 5 5 22 88 5 1 5 5 1 5 1 5 5 5 77 5 666666666 1 88 000000000000000000000 7 888888 7 7 0 44 3 3 6 6 6 3 3 7 7 7 44 3 7 6 3 7 6 3 6 666 7 5555555 3 44 3 3 3 3 2 3 3 2222 3 3 3 3 3 3 88 7 44444444444444444444444444444444444444444444444444444444444444444444444444 111 7 00 6 44 3 7 333 3 333 3 3 0 3 7 3 3 3 999 777777777777777777 6 3 666666 0 0 777 1 8888 1111 7 8888888888888 555 0 0 111 0 11111111111111111 55 33 444444 2 000000 00 8 9 888888888888 7 6 7777777777 2 0 0 0 8 0 8888 88 77777777777777 3 0 6 7 5 5 5 88 5 1 22 5 5 5 5 5 1 111 88 22 88 5
lowQualScore : . .. . .. .. . . . ... . . ........... . ..... . . .. .... ..... ... . ........ . .. ..... . . . . .. . .. . . .... .. . . . . .. . . . .. . ... . . . . .. . . . .. .. . . . . . . . . . . .. . ......... . .. ..................... . ...... . . . .. . . . . . . . . . . .. . . . . . . . . ... . ....... . .. . . . . . . . .... . . . . . . .. . .......................................................................... ... . .. . .. . . ... . ... . . . . . . . . ... .................. . . ...... . . ... . .... .... . ............. ... . . ... . ................. .. .. ...... . ...... .. . . ............ . . .......... . . . . . . .... .. .............. . . . . . . . .. . . .. . . . . . . ... .. .. .. .
lowQualScore : 7 33 3 33 77 7 8 8 888 8 8 11111111111 7 33333 7 0 44 0000 22222 222 0 55555555 5 22 00000 2 0 0 7 77 7 33 3 7 3333 00 0 5 0 0 00 0 0 5 00 5 555 5 5 0 5 00 0 0 0 00 00 5 0 5 5 0 0 0 5 0 5 55 5 555555555 0 00 000000000000000000000 3 333333 3 3 7 77 3 3 7 7 7 3 3 3 3 3 77 3 3 7 3 3 7 3 7 333 3 0000000 3 00 3 3 3 3 0 3 3 7777 3 3 3 3 3 3 33 3 00000000000000000000000000000000000000000000000000000000000000000000000000 000 3 77 7 77 3 3 333 3 333 3 3 7 3 3 3 3 3 777 777777777777777777 7 3 000000 0 2 555 0 3333 0000 3 7777777777777 000 6 6 666 6 99999999999999999 88 22 888888 5 222222 55 8 2 000000000000 0 7 2222222222 0 0 0 0 8 0 3333 33 00000000000000 3 7 7 3 5 5 5 00 0 0 00 0 5 0 0 5 0 555 00 00 00 5
consensus : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
Reference ( family-1055 ) : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|1 : AGGCAAAGTTTTTGTTGAAATATCAGCTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GAGTCAATGAAAGTCAT---------GAATGTAG----TCAGA-TGCCAGCATCTCGACCATGAGGGTAGAA--CGTGTC--ACTAGCAAGCA-G-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGA--TTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CACAA--CA-TCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAAT-CAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAA--TTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGACAAAA-TAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAGAAA-TCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCTT-----GG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTACCC-AACATAT-AA-TCCGCTCTTA-CTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATCT-GGACC-ATGTCAAAAACATAATGTTACACA-CTGCTTATCAAACTCATATCCATGTA-GGACTGATTTATTAAAGTGA-TTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAAAGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATA-TATAGATTT-TTTGTGTCAGA-CACACAGACAGA-CAGC-ACCAACACCAATGT-GTGT--GT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTT-AGTATGTATATATACGCAGC-ATTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAG-AGTT---TCCGAAA----ACCAAC--AATTTCTATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAAAATTTCTCAAT--------TT---GGACTGATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTCCCGAAATAAATTCGTAA-TAGC-------A--GTAGCTGT-TGGTT-CA-T-GTTGTATAATTA----CGCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACAAATAACTCCAAAA-ATGTA-TCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|12 : cAGAGTTTCCG-AAAACC---AAAATTTTTCA--ATCAGACATTAAAAGAC--ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTTC--AAACAAATTC
gi|13 : C-------A--GAAGCCAT-TG-TT-CAGT-GTTGTATAATTACCCCCCCCAAAACAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGTtacaacaaaataactgt
gi|15 : CAAGATGGTCA----GAACTA-----AATGAA-GTCATTGATGCACGAAATTTA-G--GTCAGATTGC-AGCAACTGGACCATGAGT-TAGATG-TATGCC--AC
gi|16 : AATGCT-GTCCCTACCCAGAGTCAATGAA----------GCACAAAATGTAGGTCATCAGA-T
gi|17 : GAGTTTCCG-AAAACC---AAAATTTTTCAAT
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-G---------CATGAAATGTAGG---TCAGA-TGC-AGCATCTCGACCATGAGG-TAGAAG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCT-GGTTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATATAAA-TCCGCTCTTAACTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTAGGAACTGATTTATTAAAGTGATTTTTCAAAA-T-ACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACA-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGA-TTTGTATATAATATTATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGCAAACA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAA----ATACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTAAGTATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---ca
gi|3 : TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTACCCCAATATAT-AAGTCTGCTCTTAACTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGAACTGATTTATTAAAGTGA-TCTT-ACTA-TGATTTG--CTTT---------------------------TTCTGTATA-CTGTAACA-GTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATGA-TATACTGATGTAAAAGACTTATTATGT-ATA-AATAGATTTAT--GT-TCAGATCACACAGACAGAGCAGC-ACCA-CACCAATGTAGTGTCGATACATC
gi|3 : ggAAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCACA---TGACTGAAG-AAATGTCTGATGTTCTGGAAA---TGAACTGT-AAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTCTAT--CACATTTAC-TAGATA-CTTA-CATGTATATGTCT----ATATGTATGTA---------------C--ATGT------------ATATAT-AC----CAGCAATTAAACCTGTGG----ACCA-C--A--TTC-AT-A-GATA---TTGC---AGAGTTTCCGAAAA-CC--AACAATTTCT----ATCAGTCA-------ACTTAT-----CA----AAGT-TTCT----------GAA-AAA--CTA------------AA-AATTTCGTAACTAGC-------AACGTAGCTGTATG-TTTCAGTTGTTGTATAATTA----CCAAAAAGC--AAAACAAACAA-----CGG------TAAGAGCCTATATATAAACAACTAACTC-AAAATATGTAATCAT-ACTTTTTTCTAAAGTGTT-GGAGTCT--GGCAAAGCTTTTCATTTTACAACC-TGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAAC-GTTTT-TGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|4 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtGACGAG--TTTTATTGATACATCA-CTTGTAATAAGCTGGGAGAAGACCTAAATG--TTAA----CCTATAATTAACCAGATTCA-------TC--TGAC-CATGAAGTGTAGG--G-CTGA-TGT-AGCTTCTGCACCTTGAGA-TGGAGGAGGTGTC---C---CAAG-ATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGT-GAGATCAATCTGAGA-----TAAA-----CACAGACTCTGACCTTA-TGTCCACAGA----C----AGACATA-CGGACA
gi|6 : aactgggcataattgaaaaacggtacattttcacaccacattctttctgattatatataaataacttttcatgtagccttgtaatttacatgcacaatccacagtgcaccttgcaaactgattgttcacacctaaatatcgcaatcacagtttgctctttacgtgttttagatatttctaatcagaaggcaccttcgtgttaattttacgatgcaatgttgatagatataaatgcaataaacacaacacttggtggcgGACGTACAAA---------GTCAGG-TGC-AGTATCTGGACCAC---A-TAGTGA-TGTGTCAAATGAGCAAGTTTG-GT--T---------TTCTACTTG---TC-----AAATGGAGAGtagtgatgattctagtacat
gi|9 : taaacacattaaatccagcatctggtgcagacaagtttggctgatatatagcttgtaataagctggataagagacttaaatgctattactggtacaAG-ATTT---TACAGAACAGTACCAATTAAATCTCTG--AAGTT----TTACTGCAGAGTTTCCGAAAA-CC--AACAATTTCTC----TCAGTCATTT--GGATTGATGACTTGA----GTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTCC--GAATAAAACAGTAACTAACAGTACTGA--GTAGCTGT-TG-TT-CATT-GTTGTAAAAgaaggaaatatgttcaaatgagaagtttggtttgttttct
blockSeqs : . . TA AG G G C TCC GTCATTGATG A GGTCA T . T GGAG AAATG CAT T AATGTGAG T GC CATAA G T G A CC . C . T . A A C AG A C A AC A . . . A T . . . . AC CA . C A . A . C . C A . . . C TC TGAGTGGCCTTTTTTTTTTTT A AGGGAT A A T . . G G C A G A A A T . T C . A G T C TG T TCTAAT . A . . . A C A T AT . T G A . A CG A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TGT A A C A . A . . . . . . A . . . TTA TACCAGCAATTAAAC G . ATT C AAA T CAGT ATTA A ATAGATA TGC A A A AATCAGACATTAAAA TT GG CA G AGTGG G G CCATTTCA C C AGTACTGA C A . T G T CCCC AA AAAACCTGTAAGTC A C T A . . . . C AC . . C . . A AAA AG TG . .
blockSeqs : . . . . . A T TCT TCTGAC A GGG . . G TGT ACT TTT . TG A TA . . G . . . . . . C . . . . T . . . . C . . A . . T . T C . A C . . T . . . A . . . . . . . T . . . . . . . A . . . A . A . . . . . . . . . . . C . . AC . . G . C . TGAAGTT . A A A TCAGTCATTTG TG GA GA G GCCAA C T TCAGTCCG T C AAC T . . . G . . . CGG . . T
blockSeqs : A T TAA G A GG . . A AGC C AT . T . . . . . . . . . ATCAGTCA . . T . . . . . . A T . . . T .
blockSeqs : . . . G G GG . . A GAT . . .
blockSeqs : . G .
blockSeqCons : CCG******** GG*** A* NGT* ***
originalCons : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAA-GTCATTGACGCACGAAATGTAGG--GTCAGA-TGC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC--AAAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
finalCons : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGAGTCAATGAACCG--------CACGAAATGTAGG---TCAGA-TGC-AGCATCTGGACCATGAGA-TAGANGT-GTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC---AAAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC
Alignments
lowQualScore : 11 1 11 22 1111 333 11 1111 11111 1 22222222 11 22222 1 22 11 1 2222 11 1 1 1 11 1 11 1 222 1 1 1 11 1 1 1 11 1 1 1 1 1 1 1 11 1 333333333 11 666666666666666666666 333333 11 1 1 1 1 11 1 1 2 1 111 1111111 1 11 1 1 1 1 1 1 1 2222 1 1 1 1 1 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777 222 22 11 1 222 1 222 1 1 1 1 1 1 111 222222222222222222 1 222222 1 111 2222 2222 3333333333333 222 3 111 1 44444444444444444 222222 333333 222222222222 3333333333 1 1 1 1 2222 11 44444444444444 1 1 1 1 11 1 1 1 1 1 1 222 11 11 1
lowQualScore : 0 88 3 88 00 6 3 3 444 0 7777 1 999 3 8 8 00 4444 44444 777 0 88888888 3 11 55555 0 0 1 6 00 0 88 3 6 8888 44 5 5 1 5 88 1 1 5 88 5 000 5 5 1 5 88 5 5 5 22 88 5 1 5 5 1 5 1 5 5 5 77 5 666666666 1 88 000000000000000000000 7 888888 7 7 0 44 3 3 6 6 6 3 3 7 7 7 44 3 7 6 3 7 6 3 6 666 7 5555555 3 44 3 3 3 3 2 3 3 2222 3 3 3 3 3 3 88 7 44444444444444444444444444444444444444444444444444444444444444444444444444 111 7 00 6 44 3 7 333 3 333 3 3 0 3 7 3 3 3 999 777777777777777777 6 3 666666 0 0 777 1 8888 1111 7 8888888888888 555 0 444 6 11111111111111111 55 33 444444 2 000000 00 8 9 888888888888 7 6 7777777777 2 0 0 0 8 0 8888 88 77777777777777 3 0 6 7 5 5 5 88 5 1 22 5 5 5 5 5 1 111 88 22 88 5
lowQualScore : . .. . .. .. . . . ... . .... . ... . . . .. .... ..... ... . ........ . .. ..... . . . . .. . .. . . .... .. . . . . .. . . . .. . ... . . . . .. . . . .. .. . . . . . . . . . . .. . ......... . .. ..................... . ...... . . . .. . . . . . . . . . . .. . . . . . . . . ... . ....... . .. . . . . . . . .... . . . . . . .. . .......................................................................... ... . .. . .. . . ... . ... . . . . . . . . ... .................. . . ...... . . ... . .... .... . ............. ... . ... . ................. .. .. ...... . ...... .. . . ............ . . .......... . . . . . . .... .. .............. . . . . . . . .. . . .. . . . . . . ... .. .. .. .
lowQualScore : 7 33 3 33 77 7 8 8 888 8 0000 4 000 8 0 0 22 0000 22222 222 0 55555555 5 22 00000 2 0 0 7 77 7 33 3 7 3333 00 0 5 0 0 00 0 0 5 00 5 555 5 5 0 5 00 0 0 0 00 00 5 0 5 5 0 0 0 5 0 5 55 5 555555555 0 00 000000000000000000000 3 333333 3 3 7 77 3 3 7 7 7 3 3 3 3 3 77 3 3 7 3 3 7 3 7 333 3 0000000 3 00 3 3 3 3 0 3 3 7777 3 3 3 3 3 3 33 3 00000000000000000000000000000000000000000000000000000000000000000000000000 000 3 77 7 77 3 3 333 3 333 3 3 7 3 3 3 3 3 777 777777777777777777 7 3 000000 0 2 555 0 3333 0000 3 7777777777777 000 2 000 0 99999999999999999 88 22 888888 5 222222 55 8 2 000000000000 0 7 2222222222 0 0 0 0 8 0 3333 33 00000000000000 3 7 7 3 5 5 5 00 0 0 00 0 5 0 0 5 0 555 00 00 00 5
consensus : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGA----GTCAATGAA--GCACGAAATGTAGGTCAGAT-GC-AGCATCTGGACCATGAGG-TAGAGG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAA-CC---AACAATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
Reference ( family-1055 ) : NAGGCGAG--TTTTGTTGAAATATCA-CTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGA----GTCAATGAACCGCACGAAATGTAGGTCAGAT-GC-AGCATCTGGACCATGAGA-TAGANG-TGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCNAAAGCCTGTGAAA-GGTCGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-CGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTCCAGAACACANCCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTNTATAACATTGTAANCTACTAGTATCCCAAGGATGACACAAACCAATCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAANCATCACAATTCAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGNNGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTNACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATGAAAAGAAAGAANATGGCCNTAAATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCNAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTATAATGA------TATCAAACACACAAATGCGTCCGATTGT-GGA-ACTAAGGATTATCAGGGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATAT-AA-TCCGCTCTTAACTTCTCAAAAACTACATAATCATACTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTA-GAACTGATTTATTAAAGTGA-TTTTCAAAA-TGACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACG-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGACTTTGTATAT-ATA-TATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGC-ACCA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAATGTAAAAAAATATACACTAAGAAAACTGGAATGA-AAACTTCTAACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCGA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTT-AGTATGTATATATAC-CAGC-ATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---TCCGNAA----ACCAAC--AATTTCTAT-AAGTTA---TTAC--CAGAGTTTCCGAAAAACC---AA-AATTTCTCAATATCAGTCATT---GGACTGATGACTTCA----GTGTGTTCTACGTAGTCCGGAACAAATTCTA--TCAGTCC--GAATAAATTCGTAACTAGC-------A--GTAGCCGT-TG-TT-CAGT-GTTGTATAATTA----CCCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACGAATAACTCCAAAATATGTAATCATTACTTTTTCCTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTACAACCCTGGCTTCNGGTCTGGTGTAANNAATTGGTCAGCAACATGTAGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATNTTAAAAAGACAAAAAAGCTTCGCAGGCAATGAAAANNTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|1 : AGGCAAAGTTTTTGTTGAAATATCAGCTTG--ACAA-CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACC-GA----GTCAATGAAAGTCATGAA-TGTAG-TCAGAT-GCCAGCATCTCGACCATGAGGGTAGAA--CGTGTC--ACTAGCAAGCA-G-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCCTAAGCCTGTGAAATGGTTGCAAACCTTGA--TTTCTGTCTACAGACGTCCCCCCAGACAGAATGGACAGACGTCCAGACAGACAGAGATCTGGGTTGATTTCAGAAC-CACCCCCCCCTTGTAA-TTGATTGTGG--GGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTCTATAACATTGTAAACTACTAGTATCCCAAGGATG-CACAA--CA-TCAAAACACCGTGTAAAAATTGGTGAAAGTCACAATACAACTATCACAAT-CAAAAACCCTTGCCATTCGAAAATGTACATATTACTGGCATGTACACATAAAATATTCACAAAAATAGCAGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAA--TTGTTACTTAACCAAACTGTGTATAGGCAAAAAATTAACCGCTAAAAGACACAAAAAATTTGTGACAAAA-TAGAAAATGCATGAAAAGAAAGAATATGGCCGTAAATACTGAAAGTT-TTCATATATTATAAAGAAA-TCCTAAGAAAGATCAATGATCAGAGATTTGGGCTATGTAGACCACTTTCTTCAATCTCCCCCCCCCCCCCCCCCCCAAAAAAACAACAACCAAAAA--ACCACCTT-----GG--------------TATAATGA------TATCAAACACACAAATGCGTCTGATTGTAGGAGACTAAGGATTATCAGGGATTACGAAGTCACAAGGAGCTCCCAATATTTTACCC-AACATAT-AA-TCCGCTCTTA-CTTCTCAAAAACTACATAATCATCCTTTATTATCCTTACAATCATGCTGTAATTTGTCATTAATCTTGATCT-GGACC-ATGTCAAAAACATAATGTTACACA-CTGCTTATCAAACTCATATCCATGTA-GGACTGATTTATTAAAGTGA-TTTTCAAAAATACCCTGTTCTTTTCTAATTGCAGGTCTATGATTTGCTTTTTCTGTATAACCGTAAAGTGTTATAAACAACATGTATATATAGAAATCGTGGAGAGTATGAATATACTGATGT-ACAGATTTTGTATAT-ATA-TATAGATTT-TTTGTGTCAGA-CACACAGACAGA-CAGC-ACCAACACCAATGT-GTGT--GT-CATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAAAAAAA---AAAAAAATTTACCCTAAGAAAACTGGAATGATAAACTTCTAACTGTCTTCATATACAACTT-TATAACACAAGCACTAAAAGAAATCACACCACAAGATGACTGAGGGAAATGTCTGATGTTCTGGAAAATTTGAATTGTTATGAGCGCAAAATCGATAGTCCTACTGACGTGGTATACCCTTCTAGTTACTAACTCTCTATATCCCATTTACCTAGATAACTTAACATGTATATGTCTTT-AGTATGTATATATACGCAGC-ATTAAACATGTGTGGACCAACATTCATAGTTTATTTGGCAG-AGTT---TCCGAAA----ACCAAC--AATTTCTATCAAGTCAAACTTAT--CAAAGTTTCTGAAAAAACTAAAA-AATTTCTCAAT--------TT---GGACTGATGACTTCAATTAGTGTGTTCTACATAGTCCAGAACAAATTCTAATTCAGTCCCGAAATAAATTCGTAA-TAGC-------A--GTAGCTGT-TGGTT-CA-T-GTTGTATAATTA----CGCAAAAAC--AAAACAAACAAAA---CTG------TAAGAGCCT-TATATAAACAAATAACTCCAAAA-ATGTA-TCATTACTTTTTCTTAAAGTGTTTGGAGTCTCTGGCAAAGCTTTTCATTTTATAACCCTGGCTTCGGGTCTGGTGTAACAAATTGGTCAGCAACATGTAGACTACAATCAGTGTATG-CTCAGAAAAAACTTAAAATAAACGCTCCCAAAAACCGTTTTTTGAGATTTCAAATTTTAAAAAGAC---AAAGCTTCGC--GCAATGAAAAATTTCGGATTGCTAAATGTAAGGCATATCCGCTGGTCACATGGACTGTTAGAATC
gi|12 : cAGAGTTTCCGAAAA-CC---AA-AATTTTTCA--ATCAGACATTAAAAGAC--ATGGCTTT-----GTGTGTTCTA-GTGGTCCGAAAGAAAGTATA--CCATTTC--AAACAAATTC
gi|13 : C-------A--GAAGCCAT-TG-TT-CAGT-GTTGTATAATTACCCCCCCCAAAACAAAAAACAAAAAAAAAACCTGTAAGTCTAAGAGCTT-TAATTAAAGGAATAACTCCAAAATATGTtacaacaaaataactgt
gi|15 : CAAGATGGTCA----GAACTAAATGAAGTCATTGA--TGCACGAAATTTAGGTCAGATTGC-AGCAACTGGACCATGAGT-TAGATG-TATGCC--AC
gi|16 : AATGCT-GTCCCTACCCAGA----GTCAATGAA--GCACAAAATGTAGGTCA
gi|17 : GAGTTTCCGAAAA-CC---AA-AATTTTTCAATtcagat
gi|2 : AGGCAAG--TTTTGTTGAAATATCA-CTTG--ACA--CAGAAAAAAGATATAAACGGCCCAAAATGCTTATCTTGAACCAGA----GTCAATGAA--GCATGAAATGTAGGTCAGAT-GC-AGCATCTCGACCATGAGG-TAGAAG-CGTGTC--ACTAGCAAGCATG-GT--T----GGTAATTTTGTTTGGCTTC-----AGGT-GAGAGCAGCCCTAAAGCCTGTGAAA-GGTTGCAAACCTTGA--TTT-TGTCTACAGACGTCC----AGACAGA-TGGACAGACGTCCAGACAGACAGAGATCT-GGTTGATTCCAGAACACAACCCCCCCTTGTAACTTGATTGTGGAGGGAATTAAAAACTACCTGAAGACGTAAAATAAGATAACAGACATGTATATAACATTGTAACTTACTAGTATCCCAAGGATGACACAAACCAATCAAAA---CGTGT-AAAATTGGTG-AAGTCACAATACAAACATCACAATTCAAAAACC--TG-CATTC-AAAATGTACATATTACT-GCATGTACACATAAAATATTCACAAAAATAGACGAAAGAACACATAATCACTGCTTTTTTTTTTAGCAACGAACATTGTTAC-TAACCAAACTGTGTATAGGCAAAAAATTCACCGCTAAAAGACACAAAAAATTTGTGACAAAAATAGAAAATGCATG-AAAGAAAGAAAAT-GCCCT-AATACTGAAAGTTCTTCATATATTATAAAGAAAATCCTAAGAAAAATCAATGATCAGAGATTT--GCTATGT-GACCACTTTCTTCAATCTCCCCCCCCCCCCC---------AAAACAACAACCCAAAATCACCACCCTTGAGTGGCCTTTTTTTTTTTTTAT-ATGAAGGGATTATCAAACACAC-AATGCGTCTGA-TGT-GGA-ACTAAGGATTATCA-GGATTACGAAGTCACAGGAAGCTCCCAATATTTTACCCCAACATATAAA-TCCGCTCTTAACTTCTC--AAACTACATAATCATACTTTA-TATCCTTACAATCATGCTGTAATTTGTCATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTAGGAACTGATTTATTAAAGTGATTTTTCAAAA-T-ACCTGTTCTTTTCTAAT-GCAGGTCTATGATTTGCTTTTTCTGTATA-CCGTAACA-GTTATAAACAACATGTATATATAGAAATC-TGGAGAG-ATGA-TATACTGATGT-ACAGA-TTTGTATATAATATTATAGATTT-T--GT-TCAGA-CACACAGACAGA-CAGCAAACA-CACCAATGT-GTGT--GTACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAAA----ATACACTAAGAAAACTGGAATG--AAACTTCT-ACTGTCTTCATAT-CAACTTATATAACACAAGCACTAAAAGAAATCACACCACA---TGACTGAGG-AAATGTCTGATGTTCTGGAAA---TGAATTGT-ATGAGC-CAAAATCAA-ATTCCTACTGACGTGGTATACACTTCTAGTTACTAACTCTCTATATCCCATTTAC-TAGATA-CTTA-CATGTATATGTCTTTAAGTATGTATATATAC-CAGCAATTAAAC--GTGTGGACCA-CATTCATAGAT-ATT--GCAG-AGTT---ca
gi|3 : TATAATGA------TATCAAACACACAA-TGCGTCCGGT-GT-GGA-ACTAGGGATTATCAGG-ATTAGGAAGACACAGGAAGCTCCCAATATTTTACCCCAATATAT-AAGTCTGCTCTTAACTTCTCAAA--CTACATAATCAAACTTTAT-ATCCTTACAATCATGCTCTAATTTGTGATTAATCT-GATCTTGGACCCATGTCAAAA-CATAACGTTACACAACTGCTTATCAAACTCATATACATGTACGAACTGATTTATTAAAGTGA-TCTT-ACTA-TGATTTG--CTTT---------------------------TTCTGTATA-CTGTAACA-GTTATAAACAACATGTATATACAGAAATC-TGGAGAG-ATGA-TATACTGATGTAAAAGACTTATTATGT-ATA-AATAGATTTAT--GT-TCAGATCACACAGACAGAGCAGC-ACCA-CACCAATGTAGTGTCGATACATC
gi|3 : ggAAATATACACTAAGAAAACTGGAATGA-AAA-TTCTA-CAGTCTTCATAT-CAACTTATATAACACAAACACTAAAAGAAATCACACCACA---TGACTGAAG-AAATGTCTGATGTTCTGGAAA---TGAACTGT-AAAAGT-CAAAATCAA-ATTCCTACTGCCGTGGTGTACACCTCCAGTTACTAACTTTCTAT--CACATTTAC-TAGATA-CTTA-CATGTATATGTCT----ATATGTATGTA---------------C--ATGT------------ATATAT-AC----CAGCAATTAAACCTGTGG----ACCA-C--A--TTC-AT-A-GATA---TTGC---AGAGTTTCCGAAAA-CC---AACAATTTCT----ATCAGTCA-------ACTTAT-----CA----AAGT-TTCT----------GAA-AAA--CTA------------AA-AATTTCGTAACTAGC-------AACGTAGCTGTATG-TTTCAGTTGTTGTATAATTA----CCAAAAAGC--AAAACAAACAA-----CGG------TAAGAGCCTATATATAAACAACTAACTC-AAAATATGTAATCAT-ACTTTTTTCTAAAGTGTT-GGAGTCT--GGCAAAGCTTTTCATTTTACAACC-TGGCTTCCGGTCTGGTGTAAACAATTGGTCA-CAACATG-AGACTACAATCAGTGTATGCCTCAGAAGAAACTTAAAATAAACGCTCCCAAAAAC-GTTTT-TGAGATTTCAAATATTAAAAAGACAAAAAAGCTTCGCAGACAATGAAAATGTTCGGATTGCTAAATGTA--GCATATCCGC-GGTCACATGGACTGTTAGAATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatatacactaagaaaactggaatgaaaattctacagtcttcatatcaacttatataacacaaacactaaaagaaatcacaccacatgactgaagaaatgtctgatgttctggaaatgaactgtaaaagtcaaaatcaaattcctactgccgtggtgtacacctccagttactaactttctatcacatttactagatacttacatgtatatgtctatatgtatgtacatgtatatataccagcaattaaacctgtggaccacattcatagatattgcagagtttccgaaaaccaacaatttctatcagtcaacttatcaaagtttctgaaaaactaaaaatttcgtaactagcaacgtagctgtatgtttcagttgttgtataattaccaaaaagcaaaacaaacaacggtaagagcctatatataaacaactaactcaaaatatgtaatcatacttttttctaaagtgttggagtctggcaaagcttttcattttacaacctggcttccggtctggtgtaaacaattggtcacaacatgagactacaatcagtgtatgcctcagaagaaacttaaaataaacgctcccaaaaacgtttttgagatttcaaatattaaaaagacaaaaaagcttcgcagacaatgaaaatgttcggattgctaaatgtagcatatccgcggtcacatggactgttagaatc
gi|4 : ggtataatgatatcaaacacacaatgcgtccggtgtggaactagggattatcaggattaggaagacacaggaagctcccaatattttaccccaatatataagtctgctcttaacttctcaaactacataatcaaactttatatccttacaatcatgctctaatttgtgattaatctgatcttggacccatgtcaaaacataacgttacacaactgcttatcaaactcatatacatgtacgaactgatttattaaagtgatcttactatgatttgctttttctgtatactgtaacagttataaacaacatgtatatacagaaatctggagagatgatatactgatgtaaaagacttattatgtataaatagatttatgttcagatcacacagacagagcagcaccacaccaatgtagtgtcgatacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtGACGAG--TTTTATTGATACATCA-CTTGTAATAAGCTGGGAGAAGACCTAAATG--TTAA----CCTATAATTAACCAGA----TTCATCTGAC--CATGAAGTGTAGGGCTGAT-GT-AGCTTCTGCACCTTGAGA-TGGAGGAGGTGTC---C---CAAG-ATGTGTAATGTGAGGAAACCTGGTTTGTATTCCATAAATGT-GAGATCAATCTGAGA-----TAAA-----CACAGACTCTGACCTTA-TGTCCACAGA----C----AGACATA-CGGACA
gi|6 : aactgggcataattgaaaaacggtacattttcacaccacattctttctgattatatataaataacttttcatgtagccttgtaatttacatgcacaatccacagtgcaccttgcaaactgattgttcacacctaaatatcgcaatcacagtttgctctttacgtgttttagatatttctaatcagaaggcaccttcgtgttaattttacgatgcaatgttgatagatataaatgcaataaacacaacacttggtggcgAAGTCAGGT-GC-AGTATCTGGACCAC---A-TAGTGA-TGTGTCAAATGAGCAAGTTTG-GT--T---------TTCTACTTG---TC-----AAATGGAGAGtagtgatgattctagtacat
gi|9 : taaacacattaaatccagcatctggtgcagacaagtttggctgatatatagcttgtaataagctggataagagacttaaatgctattactggtacagacgtacaAG-ATTT---TACAGAACAGTACCAATTAAATCTCTG--AAGTT----TTACTGCAGAGTTTCCGAAAA-CC---AACAATTTCTC----TCAGTCATTT--GGATTGATGACTTGA----GTGTGTTCTGC-CAATCTGGAGCAAATTCTA--TCAGTCC--GAATAAAACAGTAACTAACAGTACTGA--GTAGCTGT-TG-TT-CATT-GTTGTAAAAgaaggaaatatgttcaaatgagaagtttggtttgttttct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTAATTTTTCAATTGTAATAAACACATTAATTGAAACATTTATAACCATGAGTGAATTCTGATGATATATATCGTGTGATAAACAGACAAGACATAAATGCTATCTTCAACTTGATCCACTGAACCATAACATGGATGTCTGATGCAACATTTGGAGGGAACATCCAAAATCTTTCATATCAAGAAATTTGATTTGTATTCCACTTTGAATAGCTCCATAGAGTAAAGAACAGACTTCAATGTTAAATATCATGTCTATAAACATGGTGATTCCAGT
Unaligned ( gi|7 ): AAATTACATTTGCATTAATTTCTGAGATGATAATGAACTTCAATGCATTATAAAGCATAGCACCTGAGGCCATGGGCAGTTTTGTTGGCAGATACATGTTAATTTTTCTTGCAATATGGGAAAAAAATAAATGCTATCCTGAACAAGAGTTACTGAAGCACAACATATAGGTCCGATGTAGCACCCAGGATCATGCTTAGAGGTAA
Unaligned ( gi|8 ): CCTTGTAAATATACAATACACACACAGCAAAACTATTGTTTATAATCAAAGTGTCCTTGAAGATATTCTGAATACATATACTAACGAGAGTCTTGCAATATGATGGTTTACAGACCTTTTAAACACATTAAATCCAGCATCTGGTGCAGACAAGTTTCTGATATATAGCTTGTAATAAGCGGATAAGAGACTTAAATGCTA
Unaligned ( gi|10 ): GAGAAGGAAAAAGCATCTCAGGATGTGTCAAATGAGCAAGTTTGGTTTGTCTCCTACTTGTAATATGGTGAGAGGAGACTTAGTATTGTCCTTTACTTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|11 ): GAGAAGGAAAAGCATCTCAGGATTGTGATCAAATGAGCAAGTTTGGTTTGTCTCCTAATTGTAAATAGTGAGAGAGATTAGTATTGTCCTTTACTTTTGACTACAGATAGATGGACAGACATAGTGAATTTCCAGTATA
Unaligned ( gi|14 ): TCCAAAATCTTTCATATCAAGAAATGATTTGTATTTCACTTTGAATAGCTCCATAGAGTAAAGAACAAACTTCAATGTTAAATATCATGTCTATAAAC