lowQualScore : 222222 1 111
lowQualScore : 4 5 555 5555 2 22 3 888888 4 8 444 3
lowQualScore : . . ... .... . .. . ...... . . ... .
lowQualScore : 5 2 000 3333 0 66 5 777777 9 0 333 6
consensus : AGGGACGCCCGCC---CGCC----ATTCACCAT-ACT--ATAAGCCGGATGCACGT-TGTGCAACCCNGCCA--AA-AATA
Reference ( gi|4 ) : AGGGACACTTGCC---CACC----ATTCACCAT-ACT--ATAAGCTGGATGAATGA-TGTGCAATCCTGCCG--AA-AATA
gi|5 : AAGGACGCCCGTC---AGCC----ATTCACCAT-ACTAAATAAGCCGGATGCA-GATTGTGCAA
gi|2 : GAGACCCTT--C---CACCTGCTATTCACCAT-ACT--ATATCCTGGATGcggccaga
gi|8 : aaggaagttgattacacacagtaggtaccctattcgggACGCCCACC---TGCC----ATTCCCCAT-ACT--ATAAGCTGGATACACAG-TGTGCAATCCAGCCca
gi|15 : CACATGCCGCTCAC-----ATTCACCAT-ACT--ATAA-CCAGATGCACAT-TGTGCAat
gi|6 : ccCCTGCC---CACC----ACTCGCCATAACT--ATAAGCAGAATGCAAGT-TGTGCAACC
gi|1 : aatgTGCC---CACC----ATTCACCAT-ACT--ATAAGGCAGATGaggcaataat
gi|11 : gatgagctacacaaagcaggtaccctattcacggaGCC---CACC----ATTCACCAT-ACT--ATTAGCCG-------GA-TGTGCAA-CTTGTTA--AA-AATctcgtgcaaacgagcc
gi|7 : ccGCA---CGCC----ATTCACCGT-ATT--ATAATCCAGATACACAT-TGTGCAATCCAGCCcttg
gi|9 : tgcccCC---CACC----ATTCCCCAT-ACT--ACAAGCAGGATGCACAT-TGTACAACCCAGCCA--AA-aga
gi|10 : cccaCC---CGCC----ATTCATCAT-ACT--ATGAACTCAATACAAGT-TGTGCAA-CCTGCCC--AA-AAc
gi|13 : ccaCC---CACC------CCATTAT-ACT--TTAAGCTGGATGCAAGT-TGTGCAA-CCTGCCC--AA-
gi|14 : ccaC---CACC----ATCCACCAT-ACT--ATAAACCGAATGCACTT-TGTGCAACCTGGCCA--AA-
gi|16 : t---CACC----ATTCACCAT-ACT--ATAAGCCAGATGCACGC-GGTGTAA-CCCGCCC--AA-
gi|17 : ---CACC----GTTTACCTT-ACT--ATACTCCAGATGCACGC-TGTGCAACCC
gi|25 : ACC----ATTCACCAT-ACT--ATTAGCCGGATGgacca
gi|12 : tcccgtctttgC----ATTCACCAT-ACC--ATCAGCCGGATGCATGT-TTTGTAA-CCCGCTC--AATAATAtg
gi|22 : TTCACCAT-ACC--ATAAGCCAGATGCATGT-TGTGCAACCCct
gi|21 : TCACCAT-ACC--ATAAGCCGGATG--T---TGTGCAACCCGGCCAATAA-AATctcaat
gi|18 : CAT-TCT--ATAAGCCGGATGGATGT-CATGCAATACCGTCA--AA-AA
gi|23 : AT-GCT--ACAAGCCGGATACACGT-TGTGCAAGCCAGCCA--AA-AATctgta
gi|26 : --ATAAGCTGGATACATGT-TGTGCAAGTCGGCCA--AA-AATt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): GAGTTGATTACACAAGTTATAGGTGATTACACAAAGTAGGTACTGTATTCAAGGATGCCCGCTCTTTCAC
Unaligned ( gi|19 ): GAAGAGTTGATTACACAAAGTAGCTACCCTATTCAAGGACCCCCCA
Unaligned ( gi|20 ): GAGGAGTTGATTACAAAAAGTAGGTACCCTATTGGGGGACGCCCT
Unaligned ( gi|24 ): GAGTTGATTACTCAAGTTAAAGGTGATTACACAAAGTAGGTA
Alignments
lowQualScore : 0 1 22 2 5 1 33
lowQualScore : . . .. . . . ..
lowQualScore : 7 9 55 8 2 0 22
consensus : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
Reference ( family-1052 ) : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCNGCCA--AAAATA
gi|1 : GCCCACCATTCACCATA-CT--ATAAGGCAGATGC---TCGTGCAAACGAGCC
gi|10 : gatgagctacacaaagcaggtaccctattcacggatCCACCCGCCATTCATCATA-CT--ATGAACTCAATACAAGTTGTGCAACCTGCCCA--AAA
gi|11 : CCGCCCACCATTCACCATA-CT--ATTAGCCGGA-------TGTGCAA-CTTGTTA--AAAAT
gi|12 : CATTCACCATA-CC--ATCAGCCGGATGCATGTTTTGTAACCCGCTCA--ATAATActtg
gi|13 : CCACCCACC--CCATTATA-CT--TTAAGCTGGATGCAAGTTGTGCAACCTGCCCA--AAct
gi|14 : CCACCATCCACCATA-CT--ATAAACCGAATGCACTTTGTGCAACCTGGCCA--AA
gi|15 : tCCGCTCAC-ATTCACCATA-CT--ATAA-CCAGATGCACATTGTGCA
gi|16 : cccacatgCACCATTCACCATA-CT--ATAAGCCAGATGCACGCGGTGTAACCCGCCCA--
gi|17 : CACCGTTTACCTTA-CT--ATACTCCAGATGCACGCTGTGCAACCCGACCA--
gi|18 : CATT-CT--ATAAGCCGGATGGATGTCATGCAATACCGTCA--AAAA
gi|2 : CCACCTGCTATTCACCATA-CT--ATATCCTGGATGCActgta
gi|21 : aaggaagttgattacacacagtaggtaccctattcggggagacccttTCACCATA-CC--ATAAGCCGGAT----GTTGTGCAACCCGGCCAATAAAAT
gi|22 : TTCACCATA-CC--ATAAGCCAGATGCATGTTGTGCAACCC
gi|23 : ATG-CT--ACAAGCCGGATACACGTTGTGCAAGCCAGCCA--AAAATctcaat
gi|25 : CCATTCACCATA-CT--ATTAGCCGGATGt
gi|26 : tcccgtctttga--ATAAGCTGGATACATGTTGTGCAAGTCGGCCA--AAAATtg
gi|4 : AGGGACACTTGCCCACCATTCACCATA-CT--ATAAGCTGGATGAATGATGTGCAATCCTGCCG--AAAATA
gi|5 : AAGGACGCCCGTCAGCCATTCACCATA-CTAAATAAGCCGGATGCAGATTGTGCAA--CGGCCA--GA
gi|6 : ATGCCTGCCCACCACTCGCCATAACT--ATAAGCAGAATGCAAGTTGTGCAA-CCAGGCA--ATAAT
gi|7 : aGCCCGCACGCCATTCACCGTA-TT--ATAATCCAGATACACATTGTGCAATCCAGCCA--GA
gi|8 : tACGCCCACCTGCCATTCCCCATA-CT--ATAAGCTGGATACACAGTGTGCAATCCAGCCA--
gi|9 : CCCACCCACCATTCCCCATA-CT--ACAAGCAGGATGCACATTGTACAACCCAGCCA--AAAt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): GAGTTGATTACACAAGTTATAGGTGATTACACAAAGTAGGTACTGTATTCAAGGATGCCCGCTCTTTCAC
Unaligned ( gi|19 ): GAAGAGTTGATTACACAAAGTAGCTACCCTATTCAAGGACCCCCCA
Unaligned ( gi|20 ): GAGGAGTTGATTACAAAAAGTAGGTACCCTATTGGGGGACGCCCT
Unaligned ( gi|24 ): GAGTTGATTACTCAAGTTAAAGGTGATTACACAAAGTAGGTA
Alignments
lowQualScore : 0 1 22 2 33
lowQualScore : . . .. . ..
lowQualScore : 7 9 55 8 22
consensus : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
Reference ( family-1052 ) : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
gi|1 : GCCCACCATTCACCATA-CT--ATAAGGCAGATGC---TCGTGCAAACGAGCC
gi|10 : gatgagctacacaaagcaggtaccctattcacggatCCACCCGCCATTCATCATA-CT--ATGAACTCAATACAAGTTGTGCAACCTGCCCA--AAA
gi|11 : CCGCCCACCATTCACCATA-CT--ATTAGCCGGA-------TGTGCAACTT-GTTA--AAAAT
gi|12 : CATTCACCATA-CC--ATCAGCCGGATGCATGTTTTGTAACCCGCTCA--ATAATActtg
gi|13 : CCACCCACC--CCATTATA-CT--TTAAGCTGGATGCAAGTTGTGCAACCTGCCCA--AAct
gi|14 : CCACCATCCACCATA-CT--ATAAACCGAATGCACTTTGTGCAACCTGGCCA--AA
gi|15 : tCCGCTCAC-ATTCACCATA-CT--ATAA-CCAGATGCACATTGTGCA
gi|16 : cccacatgCACCATTCACCATA-CT--ATAAGCCAGATGCACGCGGTGTAACCCGCCCA--
gi|17 : CACCGTTTACCTTA-CT--ATACTCCAGATGCACGCTGTGCAACCCGACCA--
gi|18 : CATT-CT--ATAAGCCGGATGGATGTCATGCAATACCGTCA--AAAA
gi|2 : CCACCTGCTATTCACCATA-CT--ATATCCTGGATGCActgta
gi|21 : aaggaagttgattacacacagtaggtaccctattcggggagacccttTCACCATA-CC--ATAAGCCGGAT----GTTGTGCAACCCGGCCAATAAAAT
gi|22 : TTCACCATA-CC--ATAAGCCAGATGCATGTTGTGCAACCC
gi|23 : ATG-CT--ACAAGCCGGATACACGTTGTGCAAGCCAGCCA--AAAATctcaat
gi|25 : CCATTCACCATA-CT--ATTAGCCGGATGt
gi|26 : tcccgtctttga--ATAAGCTGGATACATGTTGTGCAAGTCGGCCA--AAAATtg
gi|4 : AGGGACACTTGCCCACCATTCACCATA-CT--ATAAGCTGGATGAATGATGTGCAATCCTGCCG--AAAATA
gi|5 : AAGGACGCCCGTCAGCCATTCACCATA-CTAAATAAGCCGGATGCAGATTGTGCAA--CGGCCA--GA
gi|6 : ATGCCTGCCCACCACTCGCCATAACT--ATAAGCAGAATGCAAGTTGTGCAACCAGG-CA--ATAAT
gi|7 : aGCCCGCACGCCATTCACCGTA-TT--ATAATCCAGATACACATTGTGCAATCCAGCCA--GA
gi|8 : tACGCCCACCTGCCATTCCCCATA-CT--ATAAGCTGGATACACAGTGTGCAATCCAGCCA--
gi|9 : CCCACCCACCATTCCCCATA-CT--ACAAGCAGGATGCACATTGTACAACCCAGCCA--AAAt
blockSeqs : A AA A AT
blockSeqs : . . T .
blockSeqs : . . A .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : . . T .
blockSeqs : . . T .
blockSeqs : . . C .
blockSeqs : . . T .
blockSeqs : . . T .
blockSeqs : . . G .
blockSeqs : . . A .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : . . C
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons :
originalCons : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
finalCons : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): GAGTTGATTACACAAGTTATAGGTGATTACACAAAGTAGGTACTGTATTCAAGGATGCCCGCTCTTTCAC
Unaligned ( gi|19 ): GAAGAGTTGATTACACAAAGTAGCTACCCTATTCAAGGACCCCCCA
Unaligned ( gi|20 ): GAGGAGTTGATTACAAAAAGTAGGTACCCTATTGGGGGACGCCCT
Unaligned ( gi|24 ): GAGTTGATTACTCAAGTTAAAGGTGATTACACAAAGTAGGTA
Alignments
lowQualScore : 0 1 22 2 33
lowQualScore : . . .. . ..
lowQualScore : 7 9 55 8 22
consensus : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
Reference ( family-1052 ) : AGGGACGCCCGCCCGCCATTCACCATA-CT--ATAAGCCGGATGCACGTTGTGCAACCCGGCCA--AAAATA
gi|1 : GCCCACCATTCACCATA-CT--ATAAGGCAGATGC---TCGTGCAAACGAGCC
gi|10 : gatgagctacacaaagcaggtaccctattcacggatCCACCCGCCATTCATCATA-CT--ATGAACTCAATACAAGTTGTGCAACCTGCCCA--AAA
gi|11 : CCGCCCACCATTCACCATA-CT--ATTAGCCGGA-------TGTGCAACTT-GTTA--AAAAT
gi|12 : CATTCACCATA-CC--ATCAGCCGGATGCATGTTTTGTAACCCGCTCA--ATAATActtg
gi|13 : CCACCCACC--CCATTATA-CT--TTAAGCTGGATGCAAGTTGTGCAACCTGCCCA--AAct
gi|14 : CCACCATCCACCATA-CT--ATAAACCGAATGCACTTTGTGCAACCTGGCCA--AA
gi|15 : tCCGCTCAC-ATTCACCATA-CT--ATAA-CCAGATGCACATTGTGCA
gi|16 : cccacatgCACCATTCACCATA-CT--ATAAGCCAGATGCACGCGGTGTAACCCGCCCA--
gi|17 : CACCGTTTACCTTA-CT--ATACTCCAGATGCACGCTGTGCAACCCGACCA--
gi|18 : CATT-CT--ATAAGCCGGATGGATGTCATGCAATACCGTCA--AAAA
gi|2 : CCACCTGCTATTCACCATA-CT--ATATCCTGGATGCActgta
gi|21 : aaggaagttgattacacacagtaggtaccctattcggggagacccttTCACCATA-CC--ATAAGCCGGAT----GTTGTGCAACCCGGCCAATAAAAT
gi|22 : TTCACCATA-CC--ATAAGCCAGATGCATGTTGTGCAACCC
gi|23 : ATG-CT--ACAAGCCGGATACACGTTGTGCAAGCCAGCCA--AAAATctcaat
gi|25 : CCATTCACCATA-CT--ATTAGCCGGATGt
gi|26 : tcccgtctttga--ATAAGCTGGATACATGTTGTGCAAGTCGGCCA--AAAATtg
gi|4 : AGGGACACTTGCCCACCATTCACCATA-CT--ATAAGCTGGATGAATGATGTGCAATCCTGCCG--AAAATA
gi|5 : AAGGACGCCCGTCAGCCATTCACCATA-CTAAATAAGCCGGATGCAGATTGTGCAA--CGGCCA--GA
gi|6 : ATGCCTGCCCACCACTCGCCATAACT--ATAAGCAGAATGCAAGTTGTGCAACCAGG-CA--ATAAT
gi|7 : aGCCCGCACGCCATTCACCGTA-TT--ATAATCCAGATACACATTGTGCAATCCAGCCA--GA
gi|8 : tACGCCCACCTGCCATTCCCCATA-CT--ATAAGCTGGATACACAGTGTGCAATCCAGCCA--
gi|9 : CCCACCCACCATTCCCCATA-CT--ACAAGCAGGATGCACATTGTACAACCCAGCCA--AAAt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): GAGTTGATTACACAAGTTATAGGTGATTACACAAAGTAGGTACTGTATTCAAGGATGCCCGCTCTTTCAC
Unaligned ( gi|19 ): GAAGAGTTGATTACACAAAGTAGCTACCCTATTCAAGGACCCCCCA
Unaligned ( gi|20 ): GAGGAGTTGATTACAAAAAGTAGGTACCCTATTGGGGGACGCCCT
Unaligned ( gi|24 ): GAGTTGATTACTCAAGTTAAAGGTGATTACACAAAGTAGGTA