lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222222222222222222222222222222222222
lowQualScore : 222222222222222 33333333333333 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 222222222222 3333 111111 22222 2222222 000000000000000 111 222 22222 111111 444444444444444 1 1 1 1 33333333 555555 22 22 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5555 2 333333333 222 1 333333 22222222 2 66666666666666666666666 666666 11 1 1 1 1 2 2222 11 22 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1 1 1 44444 33 1 1 2222 8888888888888888888888888888888888888888888888888888888888 11 11 66666666 22 1 2222222222222222222222222222222222222222 1 111 333333 333 1 33 1 1 4
lowQualScore : 6 666666666666666 22222222222222 6 99 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 444 6 6 888888888888 1 9999 222222 88 5 33333 1111111 000000000000000 888 444 3 3 44444 4 888888 999999999999999 0 0 0 2 3 22222222 888888 7 00 00 88 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 7777 0 1 000000000 666 3 777777 88888888 3 11111111111111111111111 555555 88 5 5 5 5 0 5555 77 00 5 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7 44 5 6 3 3 00000 00 3 6 3 0000 8 2222222222222222222222222222222222222222222222222222222222 0 11 11 33333333 88 2 4444444444444444444444444444444444444444 3 999 333333 666 3 1 7 66 3 7 3 6 6 0 7
lowQualScore : . ............... .............. . .. ... ................................................................................................................................................................................... . ... . . ............ . .... ...... .. . ..... ....... ............... ... ... . . ..... . ...... ............... . . . . . ........ ...... . .. .. .. ......................................................................................... . .... . . ......... ... . ...... ........ . ....................... ...... .. . . . . . .... .. .. . ............................................................................................................................................................................................................................................................................................................ . .. . . . . ..... .. . . . .... . .......................................................... . .. .. ........ .. . ........................................ . ... ...... ... . . . .. . . . . . . .
lowQualScore : 7 888888888888888 55555555555555 7 22 777 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 333 7 7 222222222222 7 9999 333333 11 7 00000 8888888 222222222222222 000 000 2 2 88888 0 888888 888888888888888 0 0 0 5 3 00000000 333333 3 77 00 33 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 3333 3 0 333333333 333 3 777777 77777777 3 00000000000000000000000 555555 00 5 5 0 0 0 0000 55 00 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 00 3 7 3 3 00000 00 3 7 3 3333 2 4444444444444444444444444444444444444444444444444444444444 8 00 00 00000000 44 0 0000000000000000000000000000000000000000 3 000 222222 000 3 0 3 77 3 3 3 7 7 0 3
consensus : TTAGA-ACT-TT-CT-C-------TCT---GC--GG-AGG-TAGATT-TA--AAATTAACTAGGC---CTA----------------------C-------------ATA------------T-TTG--NAATAT-------------------AT--CCG-TATC---GTCCTGCAN-TA-ATCT-AT-GAATAT----ATGTAAATATTTACATGTT-AT-TAGGTTT---GACATA-TTAA--T-GGAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACAGAATA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT--TTCATGAA----A--CAAAA--CGCTAT-AAAT-ATTTT--AATTTC-CTATTGAATGTCATTTTG--A-NANTATGC-G--T-GAA--TCCTACT-C-AA-GT-GAGT-AA-TCATATT-CAAAGAAT-TAAAAAAATA-TC---TAAGATAAA-TAAAACGAAT-GATA--ATGAT-------AT--TAA--AAAT--AACAA-CA-AAAT-AAAAA-------C-------CCCGA--TAAAAAAAA----------------ATATCGCACTC----AAGTATA-GGAATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--T-GTT-TGCTTAATCAATATTTNTTAAATNGNTCGTAAAACTCACATACATGTATCTGTATGAATTTTCAAACAAATCTATGAAAACCANCGACNCTATTCAAGACCTTCTCTCCNACTGNNTAACTTNAAATTNACCAACTCATTCCACACACATTTCATATTNTAAATTATCTTTTT------CAGTTTTNTTNGCGTTNTCTAATGGCATNTAAAACAGATCCAAGATTTACATNGACGGACGGCTCATCCNCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAAAA---AGTGA-A--TTAA-GTGAATTAAT-CGTAAA-GT-ATCAGGCTC-GG-TAC--C-TGAATTAACTC-CGTAGGCGCA-ACATC-GCCCCCCCC--CCCCAAC-CACAC-TT-GATATATTGCATCTTTAT-CATTGCATGCAAAATC-TATA-GTGC-TTTTTTTTTT--AA--GTTA---A-TGAAAGAAAATTG-AAAATACAAGAGTA-A-TGAC-A---ATT-----------------CAAT--ACTT-TACA-CTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( gi|2 ) : TTAGA-ACT-TT-CT-C-------TCT---GC--GGCAGGCTAGATT-TA--AAATTAACTAGGC---CTA----------------------C-------------AT-------------T-TTG--CAATAT-------------------AT--CCG-TATT---GTCCTGC-C-TA-ATCT-AT-GAATAT---CATGTAAATATTTACATGTT-AT-TAGGTTT---GACATA-TTA---T-G-AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAATACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT--TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AATT-C-CTATTGAATGTCATTTTG--A-AATTATGT-G--T-GAA--CCCTA-T-C-A--GT-GAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------AT--TAA--AAAT-CAATAA-CA-AAAT-ACAAA-------C-------CCCAA--TAAAAAAAAA------T--------ATATTGCACTCCGTCAAGTATAGGAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCT---TTAATATTTGTT----TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTGAA---CTT-AAATTT-CTA---C--TCC-TACA-ATTTTAT-TTATAAGTCATCTTTTTAAAACCCCATTTTATTGGTG-TATCT--TG--ATTTAAAACAGATCCA--GTTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCAT-CGTAAAGGTTATCAGGCTC-GG-TA---C-TGAATTAACTCGCGTAGGCGCA-ACATT-GCCCCCCCC--CCCCGACACACATTTTTGATATATTGC-TCTTTAT-CATTGCATGCAAAAAT-TATA-GTGCCTTTTTTTTTT--AA--GTTA---A-GCCAAGAAAATTG-AAAATACAAGAG--------------ATT-----------------CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCG---GGCGAGATAGGGC-GAGGAAAT-AGCTAGGCTAACTATTATTT----------------C-------------ATGATT---------T-TTGGACAGCAT-------------------ACTACCGCTATTTTAGTCATGCAC-TA-ATCTCATTGAATAT----ATGTAAATATTT-CATGTA-TT-TAGTTTT---GA-ATAGTTAATGT-GGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAA-ATAGTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC--TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATT-C-C-ATTTACTGTAATTTTG--A-CATTATATCA--T-GAA--TC-TACT-C-AAGGT-GAGT-AA-TCATATTTCAAAGAATGTAAATAAATA-TTAGATAAGATAAA----AACAATT-GATGTGATGAT-------ATAATAACAAAAT---ACAA-CC-AAATTAAAAAGAAGAATC-------CCCGA--TAACAAAAA-----------------TATTGCACTCGTTGAAGTATAAGGAATC--AACA-CAGTT-ACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT----GGGTCGTAAAATTCACA------TA--TG-ATGAA-TTTCAAA-AAATCTATG--AACTAACGATACT-TTCAAGACTTTCTCTCCGACTGTC---CTTCAAATTA-CTAACTC--TCCATAC--ATTTTATATTTTAAATTATCTTTTT------CAGTTTTATTGGTGTTA-----TA--ATTT-AAACAGATTCAAGATTTACATCGATGGACGGT-CATCCACTTTT
gi|4 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttTTAGATACT-TT-TT---------TCT---GC--GG-AGG--AGATTATA--AAAATAACTAGGT---CTA----------------------T-------------A--------------T-TTT--C--TAT-------------------G--------ATT-------TG---------------GAATATATCCATG-----ATT-----GTTCAC-TAGGTTTTGAGA-ATA-TTAA--T-GGAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAAT---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT--TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTC-CTAT-GAATGTCATTTTG--ACAAATATGC-G--TCGAATTCGCTA-CGC-A--ATTGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAATA--C---TAAGATAAAATAAAACGAATTGATA--ATCATTTAATCAAT--TAA--AAAA-GAATAAACATAAAA-AAAAG-------G-------ACCGA--TAAAAAAAA----------------ATATTG-ACTCTG--AAGTATA-GAAAT--AAACA-CAGTT-T-AATACTGTATTA-TTGCCATTCA--TC--T-GTTCatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|7 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT---GC--GG-AGG-TAGATT-TA--AAATTAACTAGGC---CTA----------------------C-------------ATATTTTCTCATGATT-TTG--GAATAT-------------------AT--CCG-TATC---GTC-TGC-AGTA-ATCT-AT-GAATGT----------------------------AGGTTT---GACA-----A---T-GGAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCATA--GTGA------------------AATTTCATTGATT--TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT---GCATGGGAAGTTAGATT-TA--AAATTAACTAGGC---CTAGATATTTTCAATATTTTCTCATT-------------AT-------------T-TTG--GAATAT-------------------AT--CCG-TATG---AT-CTGCAG-TA-ATCT-AT-GAATAT----ATG--------TACAAGTT-ATATAGGTTT---GACA-----A---TGG-AATTAATGAAAACTTTGAG
gi|6 : cgtccaactttTTAGA-ACT-TT-TTTC-------TCT---GC--GG-AGG-TAGATT-TA--AAATTAACTAGGT---CTA----------------------CATATTTTCTAATGAT-------------T-TTG--GAATAT-------------------AT--CCA-TATT---GT-CTGCAC-TAGGTTT-GA-GAATAT---TA
gi|3 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgt-ACT-TT-CC-CGTGCATGTCT---AC--G--AGCGTAGATT-TA--AAATTAACTAGGC---CTA----------------------C-------------ATA------------TATTGT-CAATATTTTCTCACGATTTTAGAATAT--CCG-TATC---GTCTGAA-G-TA-ATCT-AT-A------------TAAATATGTACATG---A---AGGGTT---GACA-----A---T-GGAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAATA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT--TTCATGAA----A--CAAAA----------ACT-ATGTA--AATT-TTCTATTGAATGTCATTTTG--T-TATTATAT-GCAT-GAC--TCCTGCT-C-AA-GT-GAGT-AAATCATATT-CAAAGAA----ACAAAATAAT--------A-AAA-TAAAACGAAT--ATA--ATGA--------AC--TTA--AAATACAA--A-CA-AACT-AAAAA-------CAACAGTGCTCAACATAAAAAAAAAACCTGATCACAAAAAATATCGCACTC------ATATCCTGAATCAAA-CAC-AGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCT---T--ATATT-GTTAAATTGT-CGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCAC-GACTCTATTCAA---CTT--CTCCC-CTGAATAACTTGAAATTTACCA---CATTCC-CATACATTTC----TATAA-TTATCTTTTT---------TTTTTTTTACA-TTTCTAATGGCATGTAAA-CAGATCCAAGATTTACATG-ACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAAAA---AGTGA-A--TTAA----------T-CTTAAATGTGATCAGGCTCGGG-TAC--C-TGAATTATCTatggaattaatgaaaactttgag
gi|16 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatc-G-AATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGATA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT--T
gi|6 : taatg-G-AATTAATGAAAACTTTGAGt
gi|18 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtttagaacttttttctctgcggaggtagatttaaaattaactaggtctacatattttctaatgattttggaatatatccatattgtctgcactaggtttgagaatattaatg-G-AATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TC--CTGAA-ATGTTGAAAAAT-G--AATAGAG-TA
gi|11 : ttcaGAATA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT--TTCATGAA----A--CAGA----------------TTTC--AATTTC-CTATTGAATATCATTTTGACA-AAACAAGC-G--T-GAA--TCCTACT-CAA--GT-GAGTAAA-TCAT
gi|5 : GTGAATTAATTCG-AAAGGT-ATCAG-CTC-GG-TA---CCTGAATTAACTC-CGTAGGCGCC-ACACT-GCCCCCC-C--CCCCAAC-CACA--TTTGATATATTGC-ATCTTATACA-TGCATCCAAAATC-TATG-------TTTTTTTTT--AA--GTCA---ATG--AAAGAAATTG--AAATACAAAAGTATATTAACAATTAATT-----------------CAAT-GACTT-TAC---TATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATT
gi|1 : AT-CGTAA--GTTATCAGGATC-GGGTATCCC-TGAATTAACTCG--TACGCGCA-A-ATC-CCGCCCCCC--CCCCAAC---CA------ATATGTTG-------------TG--TG--------TAT--GTGCGTTTTTTCTTT--AA--GTTA---A-TGAAAGAAAATTGGAAAATACAA-AG--------------ACTTATTAAGCAATTAAGTGCAATG-ATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATAT
gi|12 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaAACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCAC-------ATATTACATCTTTAT-CATT-----------C-TAT--GTACCTTTTTAT-----AAAGGTTA---A-TGAAAGAAAATTG--AAATACAA
gi|17 : CAACACACATTTT-GATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTGC---TTTTTTTT--AA--GTTATTGA----AAGAAAATTG-AAAatg
gi|10 : ATCGCATCTTTAT-CATTACATGCAAAGTTCTATA------TATCTTTTTTAAAA--GATA---A-TAAAAGAAAATTG--AAATATAAGAGTAAAGTGATTA---ATT-----------------CAAC--ACTT-TAAAATTATTT--T
gi|21 : cATGCATATGATAGA-AGGTT-ATTT---A--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATATcgcca
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|13 ): GGTACATCTAATATTAACTAGGCTAATGTTCTGTCGCTATTTTGTTATGATTTTGGAAGTATCTGTATCTTCTGCAGTAATCAATCAGTACATGTATTGTATATAAT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111 1111111111111111
lowQualScore : 1 222222222 11111 111 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 3333333 111 1 1111 1111 11 44444444444444444444444 11111 1111 11 1 1 3333333 1 1 11 111111111111111111111111111111111111111111111111111 1 11 33333333 111 3333333333 22222 11 1 111 1 222222 11 333 1 22222 44444444 44444 11 2 22 1 3333 44444444 1 44444444444444444444 11 555555555 4444444444444 22 11 7777777777777777777777777777777777777777777777777777777777777777777777777777 22 2 3333333333333333 111 222222 1 1 111 11 1 1111 111 1 222222 1111 444444444 1 8888888888888888 22222 22 3333333 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 999 5 77 000 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 000 1111111 66 0 999 5 5 1 5555 0 5 66 0 8888 1 5 5 4444 11 00000000000000000000000 0 0 66666 1 2222 8 11 0 8 8 8 0 3 0 4 8888888 0 3 0 2 33 777777777777777777777777777777777777777777777777777 0 99 55555555 3 777 2 2 7777777777 3 00000 22 3 0 777 0 666666 33 777 0 44444 88 00000000 0 33333 7 44 6 3 22 4 44 7 6666 33333333 4 44444444444444444444 88 7 33 555555555 1 1 0 7 0000000000000 7 7 00 44 1 6666666666666666666666666666666666666666666666666666666666666666666666666666 77 4 2 0 6666666666666666 111 111111 2 0 0 666 22 0 2 0000 777 6 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 3333333333333333 55555 33 4444444 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ... .............................................................................................................................................. ... ....... .. . ... . . . .... . . .. . .... . . . .... .. ....................... . . ..... . .... . .. . . . . . . . . ....... . . . . .. ................................................... . .. ........ . ... . . .......... . ..... .. . . ... . ...... .. ... . ..... .. ........ . ..... . .. . . .. . .. . .... ........ . .................... .. . .. ......... . . . . ............. . . .. .. . ............................................................................ .. . . . ................ ... ...... . . . ... .. . . .... ... . ...... . . . . .. . .... ......... .. . . . ................ ..... .. ....... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 444 7 99 000 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 7777777 11 1 666 7 7 4 1111 1 0 99 1 9999 1 0 7 2222 00 88888888888888888888888 8 8 22222 0 2222 0 00 8 0 0 0 0 2 0 0 2222222 0 2 0 5 88 555555555555555555555555555555555555555555555555555 0 88 00000000 0 000 0 5 2222222222 2 22222 55 2 0 555 0 000000 88 555 0 33333 33 77777777 7 00000 3 00 7 7 77 0 77 3 0000 77777777 0 00000000000000000000 00 3 00 777777777 0 0 7 3 0000000000000 3 3 77 00 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 55 0 5 0 0000000000000000 000 000000 5 0 0 222 55 0 5 8888 555 0 888888 2 2 7 2 55 5 7777 555555555 22 7 5 0 2222222222222222 00000 88 2222222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC---CTA------CATA------------T-TTGN-A----AT---------------------A-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAATATTTACATGT-AT-TAGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGA----AA--CAAAA--CGCTAT-GAA--TATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATC--CTACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGAT-AAATAAAACGAA-TGATA--ATGA--------T-------ATAA------TAA--A----AAT-AACA-------ACA-AAAT-AAAAA-------NCCCGATAANAAAAA--ATATTGCAC----TC----AAGTATA-G-G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TCTC--GTT-TGCTTA-TCAATATTTGTT---TTG-TCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACCAACTC--TCCACACA-ATTTTATATT-TAAATTATCTTTTT------C-GTTTTATTGGCGTTATCTAATG--AT-TAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC---CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TNA--C----AATT-----CAACG-ACTTT-ACAC--CTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC---CTA------CATA------------T-TTGN-A----AT---------------------A-T-------------------ATCCG-TATC---GTCCTGCANTAATCT-AT-GAATAT-AT--GTAAATATTTACATGTTAT-TAGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACAGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGA----AA--CAAAA--CGCTAT-AAA--TATTTT--AATTTCCTATTGAATGTCATTTTG--A-NANTAT--G-CGT-GAATC--CTACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAAAAAAT-ATC---TAAGAT-AAATAAAACGAA-TGATA--ATGA--------T-------AT--------TAA--A----AAT-AACA-------ACA-AAAT-AAAAA-------CCCCGATAAAAAAAA--ATATCGCAC----TC----AAGTATA-G-G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TCT---GTT-TGCTTAATCAATATTTNTTAAATNGNTCGTAAAACTCACATACATGTATCTGTATGAATTTTCAAACAAATCTATGAAAACCANCGACNCTATTCAAGACCTTCTCTCCNACTGNNTAACTTNAAATTNACCAACTCATTCCACACACATTTCATATTNTAAATTATCTTTTT------CAGTTTTNTTNGCGTTNTCTAATGGCATNTAAAACAGATCCAAGATTTACATNGACGGACGGCTCATCCNCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAAAA---AGTG--AATT--AAGTGAATTAA-T-CGTAAA-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC---CCCCAAC-CACA--CTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TGA--C----AATT-----CAAT--ACTTT-ACA---CTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAACTATTATTTCATGATT---------T-TTGG-ACAGCAT---------------------ACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAATATTT-CATGTATT-TAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGA----AAGCCAAAAAGCGCTAT-GAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAAT-ATTAGATAAGAT-AAA---AACAAT-TGATGTGATGA--------T-------ATAA------TAACAA----AAT-A-CA-------ACC-AAATTAAAAAGAAGAATCCCCGATAACAAAAA---TATTGCAC----TCGTTGAAGTATAAG-G-AATC-AA-CA-CAGTT-ACAATCATG-GTTAGC----ATGAAATCCTC--GTT-TGCTTAATCAATATTTTTT----GGGTCGTAAAATTCACATA--------TG-ATGAATTT-CAAA-AAATCTATGAA--CTAACGATACT-TTCAAGACTTTCTCTCCGACTGTC---CTTCAAATT-ACTAACTC--TCCATACA--TTTTATATTTTAAATTATCTTTTT------CAGTTTTATTGGTGTTA--TAAT------TTAAACAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC---CCCCAAC-CA---------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAGC----AATTAAGTGCAAT--GATTT-ACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT-T----AATT-----CAAC--ACTTTAAAA---TTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGA----AA--CAGA-----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATC--CTACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACC-CCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTatg
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC---CTA------CAT-------------T-TTGC-A----AT---------------------A-T-------------------ATCCG-TATT---GTCCTGC-CTAATCT-AT-GAATATCAT--GTAAATATTTACATGTTAT-TAGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGA----AA--CAAAA--CGA-ATGAAA--TATTTC--AA-TTCCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACC--CTA-TC-AG-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGAT-AAATAAAACGAA-TGATA--ATGA----------------AT--------TAA--A----AATCAATA-------ACA-AAAT-ACAAA-------CCCCAATAAAAAAAAATATATTGCACTCCGTC----AAGTATA-G-GAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TCTC--GTTCTGCT---TTAATATTTGT----TTGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTG---AACTT-AAATTT--CTACTC---CTACA---ATTTTAT-TTATAAGTCATCTTTTTAAAACCCCATTTTATTGGTG-TATCT--TG--ATTTAAAACAGATCCA--GTTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC---CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG-----------------ATT-----CAACGGACTTT-ACAT--TTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC---CTA------CATA------------TATTGTCA----AT---------------------A-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAATATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGA----AA--CAAAA---ACTAT-G----TA------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTC--CTGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAAT-A------------AAATAAAACGAA-T-ATA--ATGAACTTAAAAT-------ACAAACAAACTAA--A----AAC-AACAGTGCTCAACATAAAA-AAAAA-------ACCTGATCACAAAAA--ATATCGCAC----TC----A--TATC-CTG-AATC-AAACA-CAGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-----TATT-GTTAAATTG-TCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCA-CGACTCTATTCAA---CTTCTCCCC---TGAATAACTTGAAATTTACCA---CATTCC-CATACATTTC-TAT----AATTATCTTTTT---------TTTTTTTTACATT-TCTAATGGCATGTAAA-CAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAAA----------------AAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT---C-------------------------------------T---------------------A-T-------------------ATT-----------TTCT---ATGATTT-G--GAATAT-ATCCATGATTGTTCAC--------TAGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAA--TATTTTTAAATTTCCTA-TGAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAG-AT-TAAAAAAAT-A-C---TAAGATAAAATAAAACGAATTGATA--ATCA--------TTTAATCAAT--------TAA--AAAAGAAT-AAAC-------ATA-AAA--AAAAG-------GACCGATAAAAAAAA--ATATTG-AC----TCTG--AAGTATA-G-A-AAT--AAACA-CAGTT-T-AATACTGTATTA-TTGCCATTCA--TCT---GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC---CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATAT-TAA--CAATTAATT-----CAATG-ACTTT---A---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT---CTA------CATA------------T-TT--------------------------------------------------------------------TCT--AATGATTT-TG-GAATAT-AT--CCA--TATTGTC-TGC-AC-TAGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC---CTA------CATATTTTCTCATGATT-TTGG-A----AT---------------------A-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAATG--------------------------TAGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGA----A
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC---CTA------GATA------------T-TTTC-A----ATATTTTCTCATTATTTTGGAATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--G--------TACAAGTTATATAGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|13 ): GGTACATCTAATATTAACTAGGCTAATGTTCTGTCGCTATTTTGTTATGATTTTGGAAGTATCTGTATCTTCTGCAGTAATCAATCAGTACATGTATTGTATATAAT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 444444444444444444444444 111 2222222 111 1 1111 1111 11 333333333333333 111 11111 1111 11 1 1 3333333 1 1 11 88888888888888888888888888888888888888888888888 2 11 33333333 111 3333333333 22222 11 1 111 1 222222 11 11 1 22222 22222 33333 11 1 1 1 222 111 222 1 222 11 1 33333 6666666666 4444444444 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 777777777777777 22222 11 22222 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 6666 5 666666666666666666666666 000 8888888 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 4444 11 0 555555555555555 0 222 0 0 66666 1 2222 8 11 0 8 8 8 0 3 0 1 4444444 0 3 0 2 33 55555555555555555555555555555555555555555555555 0 44 33333333 1 777 2 7777777777 3 00000 22 3 0 777 0 666666 33 33 8 0 22222 7 99999 55555 7 44 6 3 3 3 1 7 7 333 888 333 3 7 0 444 7 33 6 55555 7777777777 0 7 7 0000000000 7 7 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 999999999999999 55555 22 2 66666 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ......................................................................................................................... . .... . ........................ ... ....... .. . ... . . . .... . . . .. . .... . . . .... .. . ............... . ... . . ..... . .... . .. . . . . . . . . ....... . . . . .. ............................................... . .. ........ . ... . .......... . ..... .. . . ... . ...... .. .. . . ..... . ..... ..... . .. . . . . . . . ... ... ... . . . ... . .. . ..... .......... . . . .......... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ..... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 2222 0 777777777777777777777777 000 3333333 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222 00 8 444444444444444 8 444 8 8 22222 4 2222 0 00 8 0 0 0 0 2 0 0 8888888 0 2 0 5 88 88888888888888888888888888888888888888888888888 0 00 55555555 0 000 5 2222222222 2 22222 55 2 0 555 0 000000 88 88 8 0 77777 3 33333 77777 3 00 7 3 3 3 0 3 3 333 333 333 3 3 7 333 3 33 0 00000 0000000000 7 3 3 3333333333 3 3 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 5 00000 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA---T-TT------------GN-A----AT---------------------A-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAATATTTACATG--A-T-AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGA----AA--CAAAA--CGCTATG-AA--TATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATC--CTACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGAT-AAATAAAACGAA-TGATA--ATGA--------TATAA------T------AA--AAAT-AAC-A-------ACATAAAN-AAAAAG-------CCCGATAANAAAAA--ATATTGCAC----TC----AAGTATA-G-G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTTTAT-T-T-AAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTTTACAN--CTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA---T-TT------------GN-A----AT---------------------A-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAATATTTACATGT-ATT-AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGA----AA--CAAAA--CGCTATG-AA--TATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATC--CTACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGAT-AAATAAAACGAA-TGATA--ATGA--------TATAA------T------AA--AAAT-AAC-A-------ACA-AAAT-AAAAAN-------CCCGATAANAAAAA--ATATTGCAC----TC----AAGTATA-G-G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TTGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACCA-ACTCTCCACACAATTTTATATTT-AAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TNA-----CAATT-----CAAC-GACTTTACAC--CTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------ATGATTT-TT------------GG-ACAGCAT---------------------ACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAATATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGA----AAGCCAAAAAGCGCTATG-AAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAAT-ATTAGATAAGAT-AAA---AACAAT-TGATGTGATGA--------TATAA------T------AACAAAAT-A-C-A-------ACC-AAATTAAAAAGAAGAATCCCCGATAACAAAAA---TATTGCAC----TCGTTGAAGTATAAG-G-AATC-AA-CA-CAGTT-ACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATG-AACTAA-CGATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATACA-TTTTATATTTTAAATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT-----TTAAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GA-TTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTTTAAAA--TTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGA----AA--CAG-----------------ATTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATC--CTACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATGAT-T-TT------------GG-A----A----------------------G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT----T-TT------------GC-A----AT---------------------A-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAATATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGA----AA--CAAAA--CGA-ATGAAA--TATTTC--AA-TTCCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACC--CTA-TC-AG-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGAT-AAATAAAACGAA-TGATA--ATGA---------AT--------T------AA--AAATCAAT-A-------ACA-AAAT-ACAAAC-------CCCAATAAAAAAAAATATATTGCACTCCGTC----AAGTATA-G-GAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCT---TTAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTC-A---CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTTTATTTAT-AAGTCATCTTTTTAAAACCCC-ATTTTATTGGTG-TATCT--TG--ATTTAAAACAGATCCA--GTTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTTTACAT--TTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA---TATT------------GTCA----AT---------------------A-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAATATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGA----AA--CAAAA---ACTATG-----TA------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTC--CTGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAAT-A------------AAATAAAACGAA-T-ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AAC-AGTGCTCAACATAAAA-AAAAAA-------CCTGATCACAAAAA--ATATCGCAC----TC----A--TATC-CTG-AATC-AAACA-CAGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T----ATT-GTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATG-AAACCA-CGACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATACATTTCTAT------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCA-TGTAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------TA---T-TT------------------------------------------------------------------TC---TAT--------------GATTT-G--GAATAT-ATCCATGATTGTTCAC-------T-AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTATA-AA--TATTTTTAAATTTCCTA-TGAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAG-AT-TAAAAAAAT-A-C---TAAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATAA-------ACATAAAA-AAAAGG-------ACCGATAAAAAAAA--ATATTG-AC----TCTG--AAGTATA-G-A-AAT--AAACA-CAGTT-T-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTTTA-----CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------ATA---T-TT--------------------------------------------------------------------------------TCT--AATGATTT-TG-GAATAT-AT--CCA--TATTGTC-TGC-ACT-AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA---T-TTTCTCATGATTTTGG-A----AT---------------------A-T-------------------ATCCG-TATC---GTC-TGCAGTAATCT-AT-GAATGT-A-------------------------GGTTT---GACA-------ATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGA----A
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------ATA---T-TT------------TC-A----ATATTTTCTCATTATTTTGGAATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA-AGTTATA------T-AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 444444444 111 3333333 111 1 1111 1111111 33333333333333 111 11111 1111 11 1 111 4444444 11 11 11 8888888888888888888888888888888888888888888888888888 22222 11 5555 111 1 11 1 111 1 222222 11 11 1 3333 222 33333 11 1 1 1 3333 111 222 1 222 1 1 44444444 6666666666 333333333333333 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 111 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 0 55555555555555 0 222 3 0 66666 1 2222 8 11 0 8 8 8 0 000 1 0000000 33 22 33 4444444444444444444444444444444444444444444444444444 3 1 11111 1 3 33 2 6666 3 666 0 2 33 0 777 0 666666 33 33 8 0 1111 7 333 55555 7 44 6 3 3 3 1 7 0000 888 333 3 7 444 7 7 3 3 77777777 7777777777 0 666666666666666 7 6 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 000 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ...................................................................................................................... . .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... . .............. . ... . . ..... . .... . .. . . . . . ... . ....... .. .. .. .................................................... . . ..... . . .. . .... . ... . . .. . ... . ...... .. .. . . .... . ... ..... . .. . . . . . . .... ... ... . . ... . . . . ........ .......... . ............... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 2222 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 8 44444444444444 8 444 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 8888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 0 55555 0 2 88 5 2222 2 222 0 5 22 0 555 0 000000 88 88 8 0 7777 3 333 77777 3 00 7 3 3 3 0 3 7777 333 333 3 3 333 3 3 3 3 00000000 0000000000 7 000000000000000 3 7 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA-T----------T-TTGN-A----AT---------------------A-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAA-TATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGT-AAGTATA-G-GAA-TCAAA-CAC-AGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA------------T-TTGN-A----AT---------------------A-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAA--TATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAANAAAAAG----CCCGATAANAAAAAATAT--TGCACTC----AAGTATA-G-GAA-TCAAA-CAC-AGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACANCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------ATGATT---------T-TTGG-ACAGCAT---------------------ACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAATA-TTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA-TAT--TGCACTCGTTGAAGTATAAG-GAA-TCAA--CAC-AGTT-ACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATGAAC-TAAC-GATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATACA-TTT-TATATTTTA--AATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT----TT-AAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAG----------------ATTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATGAT----------T-TTGG-A----A----------------------G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-------------T-TTGC-A----AT---------------------A-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAA-TATTTC--AATT-CCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TCA-G-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTCAAGTATA-G-GAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCTT---TAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTGT-ATCT--TG--ATTTAAAACAGATCCAG--TTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATA------------TATTGTCA----AT---------------------A-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG----TA------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAATA------------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAAATAT--CGCACTC----A--TATC-CTGAA-TCAAA-CAC-AGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T----ATT-GTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCAC-GACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATACA-TTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCATG-TAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------TA------------T-TT------------------------------------------------------TC---TAT--------------GATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTATAAA--TATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAATA-CT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAAATAT--TG-ACTCTG--AAGTATA-G-AAA-T-AAA-CAC-AGTT-T-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------ATA------------T-TT--------------------------------------------------------------------TCT--AATGATTT-TG-GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATATTTTCTCATGATT-TTGG-A----AT---------------------A-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------ATA------------T-TTTC-A----ATATTTTCTCATTATTTTGGAATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444 111 3333333 111 1 1111 1111111 3333333333333333333333 11111 1111 11 1 111 4444444 11 11 11 8888888888888888888888888888888888888888888888888888 22222 11 44444 222 1 11 1 1 1 1 222222 11 11 1 3333 222 33333 11 1 1 1 3333 111 222 1 222 1 1 44444444 6666666666 333333333333333 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 3333333333333333333333 3 0 66666 1 2222 8 11 0 8 8 8 0 000 1 0000000 33 22 33 4444444444444444444444444444444444444444444444444444 3 11111 1 3 33 2 88888 777 0 2 33 0 0 0 0 666666 33 33 8 0 1111 7 333 55555 7 44 6 3 3 3 1 7 0000 888 333 3 7 444 7 7 3 3 77777777 7777777777 0 666666666666666 7 6 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ....................................................................................................................... ... .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... ...................... . . ..... . .... . .. . . . . . ... . ....... .. .. .. .................................................... . ..... . . .. . ..... ... . . .. . . . . ...... .. .. . . .... . ... ..... . .. . . . . . . .... ... ... . . ... . . . . ........ .......... . ............... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 2222222222222222222222 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 8888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 55555 0 2 88 5 22222 555 0 5 22 0 0 0 0 000000 88 88 8 0 7777 3 333 77777 3 00 7 3 3 3 0 3 7777 333 333 3 3 333 3 3 3 3 00000000 0000000000 7 000000000000000 3 7 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGTC-AAGTATA---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGT--AAGTATA---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-GATTTT--------------------T-----------GG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAATA-TTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA-TAT--TGCACTC-GTTGAAGTATAA--GGAA-TCAA--CAC-AG-TTACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATGAAC-TAAC-GATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATACA-TTT-TATATTTTA--AATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT----TT-AAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAGA----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATGA--TTT--------------------T-----------GG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----TT--------------------T-----------GC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AATT-CCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TCA-G-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTC-AAGTATA---GGAAATCAAAACACCAG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCTT---TAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTGT-ATCT--TG--ATTTAAAACAGATCCAG--TTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TAT--------------------T-----------GTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG---T-A------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAATA------------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAAATAT--CGCACTC---------ATATCCTGAA-TCAAA-CAC-AGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T-A----TTGTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCAC-GACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATACA-TTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCATG-TAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-A--TTT--------------------T-----------CT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAATA-CT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAAATAT--TG-ACTCTG---AAGTATA---GAAA-T-AAA-CAC-AG-TTT-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-A--TTT--------------------T-----------CT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------TCTCATGATTTTGG-A----ATA-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-A--TTTTCAATATTTTCTCATTATTTT-----------GG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444 111 3333333 111 1 1111 1111111 3333333333333333333333 11111 1111 11 1 111 33333333 11 11 11 8888888888888888888888888888888888888888888888888888 22222 111 3333 2222222 11 1 111 1 222222 11 11 1 22222 222 33333 11 1 1 1 222 111 222 1 222 1 1 444444 6666666666 4444444444 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 3333333333333333333333 0 0 66666 1 2222 8 11 0 8 8 8 0 000 1 11111111 33 22 33 4444444444444444444444444444444444444444444444444444 3 11111 1 777 2 3333 7777777 22 3 0 777 0 666666 33 33 8 0 22222 7 333 55555 7 44 6 3 3 3 1 7 7 333 888 333 3 7 444 7 7 3 3 999999 7777777777 0 7 7 0000000000 7 7 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ...................................................................................................................... ... .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... ...................... . . ..... . .... . .. . . . . . ... . ........ .. .. .. .................................................... . ..... . ... . .... ....... .. . . ... . ...... .. .. . . ..... . ... ..... . .. . . . . . . . ... ... ... . . ... . . . . ...... .......... . . . .......... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 2222222222222222222222 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 88888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 55555 0 000 5 2222 8888888 55 2 0 555 0 000000 88 88 8 0 77777 3 333 77777 3 00 7 3 3 3 0 3 3 333 333 333 3 3 333 3 3 3 3 000000 0000000000 7 3 3 3333333333 3 3 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGT-AAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGTCAAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-----------GATTTT--------------------TGG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAAT-ATTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA---TATTGCACTCGTTGAAGTATAAG---G-AATC-AA-CA-CAGTT-ACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATG-AACTAA-CGATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATAC-ATTT-TATATTT--TAAATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT-----TTAAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAGA----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATG----------A--TTT--------------------TGG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT---------------TT--------------------TGC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AA-TTCCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TC-AG-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTCAAGTATA-G---GAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCT---TTAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTC-A---CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTG-TATCT--TG--ATTTAAAACAGATCCA--GTTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TAT--------------------TGTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG---T-A------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAAT-A-----------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAA--ATATCGCACTC--------ATA-TCCTG-AATC-AAACA-CAGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T----ATT-GTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATG-AAACCA-CGACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATAC-ATTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCA-TGTAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-----------A--TTT--------------------TCT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAAT-ACT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAA--ATATTG-ACTCTG--AAGTATA-G---A-AAT--AAACA-CAGTT-T-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-----------A--TTT--------------------TCT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATATTTTCTCATGA--TTT--------------------TGG-A----ATA-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-----------A--TTTTCAATATTTTCTCATTATTTTGG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444 111 3333333 111 1 1111 1111111 3333333333333333333333 11111 1111 11 1 111 4444444 11 11 11 8888888888888888888888888888888888888888888888888888 22222 11 44444 222 1 11 1 1 1 1 222222 11 11 1 3333 222 33333 11 1 1 1 3333 111 222 1 222 1 1 44444444 6666666666 333333333333333 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 3333333333333333333333 3 0 66666 1 2222 8 11 0 8 8 8 0 000 1 0000000 33 22 33 4444444444444444444444444444444444444444444444444444 3 11111 1 3 33 2 88888 777 0 2 33 0 0 0 0 666666 33 33 8 0 1111 7 333 55555 7 44 6 3 3 3 1 7 0000 888 333 3 7 444 7 7 3 3 77777777 7777777777 0 666666666666666 7 6 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ....................................................................................................................... ... .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... ...................... . . ..... . .... . .. . . . . . ... . ....... .. .. .. .................................................... . ..... . . .. . ..... ... . . .. . . . . ...... .. .. . . .... . ... ..... . .. . . . . . . .... ... ... . . ... . . . . ........ .......... . ............... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 2222222222222222222222 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 8888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 55555 0 2 88 5 22222 555 0 5 22 0 0 0 0 000000 88 88 8 0 7777 3 333 77777 3 00 7 3 3 3 0 3 7777 333 333 3 3 333 3 3 3 3 00000000 0000000000 7 000000000000000 3 7 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGTC-AAGTATA---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGT--AAGTATA---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-GATTTT--------------------T-----------GG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAATA-TTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA-TAT--TGCACTC-GTTGAAGTATAA--GGAA-TCAA--CAC-AG-TTACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATGAAC-TAAC-GATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATACA-TTT-TATATTTTA--AATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT----TT-AAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAGA----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATGA--TTT--------------------T-----------GG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----TT--------------------T-----------GC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AATT-CCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TCA-G-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTC-AAGTATA---GGAAATCAAAACACCAG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCTT---TAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTGT-ATCT--TG--ATTTAAAACAGATCCAG--TTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TAT--------------------T-----------GTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG---T-A------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAATA------------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAAATAT--CGCACTC---------ATATCCTGAA-TCAAA-CAC-AGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T-A----TTGTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCAC-GACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATACA-TTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCATG-TAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-A--TTT--------------------T-----------CT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAATA-CT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAAATAT--TG-ACTCTG---AAGTATA---GAAA-T-AAA-CAC-AG-TTT-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-A--TTT--------------------T-----------CT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------TCTCATGATTTTGG-A----ATA-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-A--TTTTCAATATTTTCTCATTATTTT-----------GG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444 111 3333333 111 1 1111 1111111 3333333333333333333333 11111 1111 11 1 111 33333333 11 11 11 8888888888888888888888888888888888888888888888888888 22222 111 3333 2222222 11 1 111 1 222222 11 11 1 22222 222 33333 11 1 1 1 222 111 222 1 222 1 1 444444 6666666666 4444444444 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 3333333333333333333333 0 0 66666 1 2222 8 11 0 8 8 8 0 000 1 11111111 33 22 33 4444444444444444444444444444444444444444444444444444 3 11111 1 777 2 3333 7777777 22 3 0 777 0 666666 33 33 8 0 22222 7 333 55555 7 44 6 3 3 3 1 7 7 333 888 333 3 7 444 7 7 3 3 999999 7777777777 0 7 7 0000000000 7 7 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ...................................................................................................................... ... .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... ...................... . . ..... . .... . .. . . . . . ... . ........ .. .. .. .................................................... . ..... . ... . .... ....... .. . . ... . ...... .. .. . . ..... . ... ..... . .. . . . . . . . ... ... ... . . ... . . . . ...... .......... . . . .......... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 2222222222222222222222 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 88888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 55555 0 000 5 2222 8888888 55 2 0 555 0 000000 88 88 8 0 77777 3 333 77777 3 00 7 3 3 3 0 3 3 333 333 333 3 3 333 3 3 3 3 000000 0000000000 7 3 3 3333333333 3 3 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGT-AAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGTCAAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-----------GATTTT--------------------TGG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAAT-ATTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA---TATTGCACTCGTTGAAGTATAAG---G-AATC-AA-CA-CAGTT-ACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATG-AACTAA-CGATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATAC-ATTT-TATATTT--TAAATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT-----TTAAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAGA----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATG----------A--TTT--------------------TGG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT---------------TT--------------------TGC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AA-TTCCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TC-AG-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTCAAGTATA-G---GAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCT---TTAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTC-A---CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTG-TATCT--TG--ATTTAAAACAGATCCA--GTTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TAT--------------------TGTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG---T-A------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAAT-A-----------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAA--ATATCGCACTC--------ATA-TCCTG-AATC-AAACA-CAGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T----ATT-GTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATG-AAACCA-CGACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATAC-ATTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCA-TGTAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-----------A--TTT--------------------TCT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAAT-ACT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAA--ATATTG-ACTCTG--AAGTATA-G---A-AAT--AAACA-CAGTT-T-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-----------A--TTT--------------------TCT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATATTTTCTCATGA--TTT--------------------TGG-A----ATA-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-----------A--TTTTCAATATTTTCTCATTATTTTGG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444 111 3333333 111 1 1111 1111111 3333333333333333333333 11111 1111 11 1 111 4444444 11 11 11 8888888888888888888888888888888888888888888888888888 22222 11 44444 222 1 11 1 1 1 1 222222 11 11 1 3333 222 33333 11 1 1 1 3333 111 222 1 222 1 1 44444444 6666666666 333333333333333 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 3333333333333333333333 3 0 66666 1 2222 8 11 0 8 8 8 0 000 1 0000000 33 22 33 4444444444444444444444444444444444444444444444444444 3 11111 1 3 33 2 88888 777 0 2 33 0 0 0 0 666666 33 33 8 0 1111 7 333 55555 7 44 6 3 3 3 1 7 0000 888 333 3 7 444 7 7 3 3 77777777 7777777777 0 666666666666666 7 6 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ....................................................................................................................... ... .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... ...................... . . ..... . .... . .. . . . . . ... . ....... .. .. .. .................................................... . ..... . . .. . ..... ... . . .. . . . . ...... .. .. . . .... . ... ..... . .. . . . . . . .... ... ... . . ... . . . . ........ .......... . ............... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 2222222222222222222222 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 8888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 55555 0 2 88 5 22222 555 0 5 22 0 0 0 0 000000 88 88 8 0 7777 3 333 77777 3 00 7 3 3 3 0 3 7777 333 333 3 3 333 3 3 3 3 00000000 0000000000 7 000000000000000 3 7 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGTC-AAGTATA---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGT--AAGTATA---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TAT---TTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-GATTTT--------------------T-----------GG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAATA-TTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA-TAT--TGCACTC-GTTGAAGTATAA--GGAA-TCAA--CAC-AG-TTACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATGAAC-TAAC-GATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATACA-TTT-TATATTTTA--AATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT----TT-AAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAGA----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATGA--TTT--------------------T-----------GG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----TT--------------------T-----------GC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AATT-CCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TCA-G-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTC-AAGTATA---GGAAATCAAAACACCAG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCTT---TAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTGT-ATCT--TG--ATTTAAAACAGATCCAG--TTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TAT--------------------T-----------GTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG---T-A------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAATA------------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAAATAT--CGCACTC---------ATATCCTGAA-TCAAA-CAC-AGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T-A----TTGTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCAC-GACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATACA-TTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCATG-TAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-A--TTT--------------------T-----------CT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAATA-CT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAAATAT--TG-ACTCTG---AAGTATA---GAAA-T-AAA-CAC-AG-TTT-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-A--TTT--------------------T-----------CT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------TCTCATGATTTTGG-A----ATA-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-A--TTTTCAATATTTTCTCATTATTTT-----------GG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444 111 3333333 111 1 1111 1111111 3333333333333333333333 11111 1111 11 1 111 33333333 11 11 11 8888888888888888888888888888888888888888888888888888 22222 111 3333 2222222 11 1 111 1 222222 11 11 1 22222 222 33333 11 1 1 1 222 111 222 1 222 1 1 444444 6666666666 4444444444 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 1111 444444444 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 0 5 888 1 77 3 444444444 000 1111111 66 0 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6666666 3333333333333333333333 0 0 66666 1 2222 8 11 0 8 8 8 0 000 1 11111111 33 22 33 4444444444444444444444444444444444444444444444444444 3 11111 1 777 2 3333 7777777 22 3 0 777 0 666666 33 33 8 0 22222 7 333 55555 7 44 6 3 3 3 1 7 7 333 888 333 3 7 444 7 7 3 3 999999 7777777777 0 7 7 0000000000 7 7 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 6666 000000000 99 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ...................................................................................................................... ... .... . . ... . .. . ......... ... ....... .. . ... . . . .... . . . .. . .... . . . ....... ...................... . . ..... . .... . .. . . . . . ... . ........ .. .. .. .................................................... . ..... . ... . .... ....... .. . . ... . ...... .. .. . . ..... . ... ..... . .. . . . . . . . ... ... ... . . ... . . . . ...... .......... . . . .......... . . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . .... ......... .. . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 1 0 222 6 11 6 999999999 000 7777777 11 1 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 2222222 2222222222222222222222 8 8 22222 4 2222 0 00 8 0 0 0 0 888 0 88888888 22 55 88 2222222222222222222222222222222222222222222222222222 2 55555 0 000 5 2222 8888888 55 2 0 555 0 000000 88 88 8 0 77777 3 333 77777 3 00 7 3 3 3 0 3 3 333 333 333 3 3 333 3 3 3 3 000000 0000000000 7 3 3 3333333333 3 3 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 7777 555555555 22 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGT-AAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGTCAAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-----------GATTTT--------------------TGG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGT-ATTTAGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAAGTT-GATACCGATCTC-TTGCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-TA-TTTCATTGATTGTTC-TGAA----AGCCAAAAAGCGCTATGAAAGGATTTT--AATTCC--ATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAATC---TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAAT-ATTAGATAAGATAAA----AACAATT-GATGTGATGA--------TATAA------T------AACAAAAT-A-CA-------A-CCAAATTAAAAAGAAGAATCCCCGATAACAAAAA---TATTGCACTCGTTGAAGTATAAG---G-AATC-AA-CA-CAGTT-ACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAATTT-CAAA-AAATCTATG-AACTAA-CGATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATAC-ATTT-TATATTT--TAAATTATCTTTTT-------CAGTTTTATTGGTGTTAT--AAT-----TTAAA-CAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG--------TAT--GTG-CGTTTTTTCTTT--AAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTCTATA-------TATCTTTTTTAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA----A--CAGA----------------TTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAAG-TGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------CTAT--GTA-C-CTTTTTATAA--AGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATG----------A--TTT--------------------TGG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAATG--GAATTAATGAAAACTTTGAGTCCGATCTCTT-ATA-TA-AAGTAAAGACAA----TTCACAGGA-TA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-T-TATATGTG-C---TTTTTTTT--AAGTTATTGAAAGAAAATT-GAAA
gi|18 : --GAATCA-TGGACATTTTGAGCCCGATCTT-TAGTA-TA-AAGTAAAGACAAT---TCC-TGAAA-TG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT---------------TT--------------------TGC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACATGTTATT-AGGTTT---GACA-TA-TTA-TG---AATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-ATGACAAT---TTCACAGAA-TACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA----A--CAAAA--CGA-ATGAAAT-ATTTC--AA-TTCCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TC-AG-TGAGT-AA-TCATATT-CAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA---------AT--------T------AA--AAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTCAAGTATA-G---GAAATCAAAACACCAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCT---TTAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTC-A---CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TAT---TTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTG-TATCT--TG--ATTTAAAACAGATCCA--GTTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-ATTATA-GTGCC-TTTTTTTTTT--AAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TAT--------------------TGTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACATG--A---AGGGTT---GACA-------ATG--GAATTAATGAAAACTTTGAGCCCGATTTC-TTGTG-TA-AAG-----ACAAT---T-CACAGAA-TA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA----A--CAAAA---ACTATG---T-A------AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAAG-TGAGT-AAATCATATT-CAAAGAAA-CAAAATAAT-A-----------AAA-TAAAACGAAT--ATA--ATGAACTTAAAATACAAACAAACT------AA--AAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAA--ATATCGCACTC--------ATA-TCCTG-AATC-AAACA-CAGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTTA-T----ATT-GTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATG-AAACCA-CGACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATAC-ATTTCTAT--------AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCA-TGTAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-----------A--TTT--------------------TCT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC------T--AGGTTTTGAGA-A-TA-TTAATG--GAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TCA-TATAAGT-AAAGAAATATATTCACAGAA-T---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATACAA--TAAAA--CGCTAT-AAAT-ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAAT-TGAAT-AA-T-ATATT-CAAAGA-T-TAAAAAAAT-ACT----AAGATAAAATAAAACGAATTGATA--ATCA--------TTTAA------TCAATTAAA--AAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAA--ATATTG-ACTCTG--AAGTATA-G---A-AAT--AAACA-CAGTT-T-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TCTATG--------TTTTTTTTT--AAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-----------A--TTT--------------------TCT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC----T--AGGTTT---GAGAATA-TTAATG--GAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------ATATTTTCTCATGA--TTT--------------------TGG-A----ATA-T-------------------ATCCG-TATC---GT-CTGCAGTAATCT-AT-GAAT-------------------------GT--AGGTTT---GAC-------AATG--GAATTAATGGAAACTTTGAGCCCGATCTCTT-GTG-TA-AAGT-AAAGAAAA---TTCACAGCA-TA--GTGA------------------AATTTCATTGATT-TTCATGAA----
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-----------A--TTTTCAATATTTTCTCATTATTTTGG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTAT-----AT--AGGTTT---GAC-------AATG--GAATTAATGAAAACTTTGAG
blockSeqs : T C . CGTGCATG . ATG C CT A . CTACATATATTGTCAATATTTTCTCACGATTTTAGAATATCCGTATCGTC CAG AT C CCA A TT A ATGTTATT TGA GAATAT . TT . T A TATA A . CG TT G A . TACAA ACGCTATAAATATTTTTA ACAA A ATG C GC . A A . AT T AATTT AT TG . ACTTAAAATACAAACAAACTAAAAACAACAGTGCTCAAC T C A ATA C CGTC TCCTG CA A C TA T TTGCC . CA C C TAT T AAA ACATG T TC C . A C A A A . CG AAT G A CAT T A A C TTA AAAACCCCA T A CTAATGGCA A A C CT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A G . . TT GGTT G G . C GC T C TCGT AA C TTTTT A T A T AC C GTTC AGTGCCT AA . A . TATATTAACAATT . GG . AAA AGTG C GA ATT CC . T . C C G A
blockSeqs : . C . TC . . . TT . . CTAGATATTTTCAATATTTTCTCATTATTTTGGAATATATCCGTATGATC AAG AT . G A T A ATGA . CATAT . TA . . A T G . . T A . . A ACGAATGAAATATTTC ACA T G . . . . . . AA A ACT T G . TTTAATCAATTAAAAAAGAATAAAC T A C A C TG GGA C A . A . T . . G . TT . . . T T C . . . C A . . . . . . . . . . . . . . . CTTGAT A . G C T TGTG G . . C C . C TGC . A TTTT A T . T GC C AAT ATGTGC . . A . TAAAGTGATT . G . CAT TC G A ACA . . T . C C . A
blockSeqs : . . . C . . . T . . TAATGTTCTGTCGCTATTTTGTTATGATTTTGGAAGTATCTGTATCTTC CAG AT . G A T A ACT . ATAT . TT . . . T A . . G G . . A AACTATGTA AA T G . . . . . . T A A T . . ATTAAAAATCAATAAC . G A A . . GA . A . T . T . . . . T GT . . . . C . C TG . A TTT A T . T GC C ATC GTACC . . . . . . . . . TG C G A . . . . . C . .
blockSeqs : . . . C . . . T . . CTACATATTTTCTCATGATTTTGGAATATATCCGTATCGTC CAG AT . C T T G GT . CA . TT . . . T A . . T A . . A TTTC TT A G . . . . . . C A T . T GC C AT AT . . . .
blockSeqs : . . . C . . . T . . CTACATTTTGCAATATATCCGTATTGTCC CC AT . G C . A AT . C . T . . . A A . . T G . . . . . . . . C G . . .
blockSeqs : . . . . . . . T . . CTACATATTTTCTAATGATTT . G . . . . . T . C . T . . . . A . . T A . .
blockSeqs : . . . CTATATTTTCTA . . . . . . . . . .
blockSeqs : .
blockSeqCons : ***** ** AT** AT******* CATAT** ** T*** T*** A****** AATATTTN************** G*** TTT*** GC ATC* GTGCC****
originalCons : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACATG--AT--AGGTTT---GACA-TA-TTAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA----A--CAAAA--CGCTATGAAAT-ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGT-AAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TCTATA-GTG-C-TTTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
finalCons : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----------A--TTT--------------------TGN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCTAT--GAATAT-AT--GTAAAT-ATTTACAT-------AGGTTT---GACATAT--TAATG--GAATTAATGAAAACTTTGAGCCCGATCTC-T-GTA-TA-AAGT-AAGACAAT---TTCACGGAA-TA--GTGAAAAAGT---AATAGAA-TAATTTCATTGATT-TTCATGAAA------CAAAAATATTTN--------------AATTTCCTATTGAATGTCATTTTG--A-AATTATG---CGT-GAATCC--TACTCAAG-TGAGT-AA-TCATATT-CAAAGAAT-TAAANAAAT-ATT---TAAGATAAA-TAAAACGAAT-GATA--ATGA--------TATAA------T------AA--AAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAA--ATATTGCACTCCGT-AAGTATA-G---G-AATC-AAACA-CAGTT-A-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTTA-TCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATG-AAACCA-CGANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATAC-ATTT-TAT---T--TAAATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--A-TTAAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACATTT---GATATATTGCATCTTTAT-CATTGCATGCAAAATC-TATGTGCC----TTTTTTTTT--AAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 1 222222222 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 44444444444444 111 222222222222 111 1 1111 11 00000000000000000000000000000000000 111 1 11111 1111 11 1 111 4444444 111 11111 88888888888888888888888888888 111 4444444444444 22222 11 333333 11111 1 1 1 1 1 1 222222 11 11 1 3333 222 33333 1 1 1 3333 111 222 1 222 1 1 333333333 6666666666 5555555555555555 11 11 77777777777777777777777777777777777777777777777777777777777777777777777 11 1 5555555555555555 111 222222 1 1 111 11 1 1111 11 1 222222 11111 111 1 666666666666666 22222 11 1 1111 222 1111 11 1 1 1
lowQualScore : 5 7 5 111111111 44444 000 5 777 5 66 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 6666 5 8888 1 77 3 22222222222222 000 999999999999 2 999 5 5 1 5555 0 1 5 66 0 8888 1 5 5 6 11 99999999999999999999999999999999999 222 0 0 66666 1 2222 8 3 11 88 8 8 0 000 1 0000000 000 77777 55555555555555555555555555555 444 1111111111111 3 11111 44 33 2 888888 88888 0 55 0 0 0 0 0 666666 33 33 8 0 1111 7 333 55555 7 7 6 6 3 3 3 1 7 0000 888 333 3 7 444 7 7 3 3 888888888 7777777777 0 2222222222222222 6 33 44 0 11111111111111111111111111111111111111111111111111111111111111111111111 88 1 1 5 8888888888888888 111 111111 2 0 0 666 22 0 2 0000 33 5 0 999999 3 3 6 3 33 2 77777 6 666 6 6 5 8 000000000000000 55555 22 0 999 9999 1 444 1111 77 0 3 0 2 2 0 3
lowQualScore : . . . ......... ..... ... . ... . .. ....................................................................................................................... ... .... . .... . .. . .............. ... ............ . ... . . . .... . . . .. . .... . . . . .. ................................... ... . . ..... . .... . . .. .. . . . ... . ....... ... ..... ............................. ... ............. . ..... .. .. . ...... ..... . .. . . . . . ...... .. .. . . .... . ... ..... . . . . . . . . . .... ... ... . . ... . . . . ......... .......... . ................ . .. .. . ....................................................................... .. . . . ................ ... ...... . . . ... .. . . .... .. . . ...... . . . . .. . ..... . ... . . . . ............... ..... .. . ... .... . ... .... .. . . . . . . .
lowQualScore : 7 1 7 444444444 33333 000 7 111 0 99 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0000 0 4444 6 11 6 33333333333333 000 333333333333 9 666 7 7 4 1111 1 4 0 99 1 9999 1 0 7 7 00 22222222222222222222222222222222222 000 6 8 22222 4 2222 0 2 00 88 0 0 0 888 0 8888888 222 22222 22222222222222222222222222222 000 0000000000000 2 55555 22 88 5 222222 55555 0 88 0 0 0 0 0 000000 88 88 8 0 7777 3 333 77777 3 3 7 7 3 3 3 0 3 7777 333 333 3 3 333 3 3 3 3 000000000 0000000000 7 0000000000000000 7 33 00 7 00000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 5 5555555555555555 000 000000 5 0 0 222 55 0 5 8888 88 4 6 000000 2 2 7 2 55 5 77777 7 555 7 7 5 0 000000000000000 00000 55 0 222 5555 0 888 0000 55 0 2 0 5 5 0 2
consensus : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACA------T------AGGTTT---GACA-TA-TTAA--TGGAATTAATGAAAACTTTGAGCCCGATCTCTT-GT-ATA-AAGT-AAGACAAT---TTCACGG-AATA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA-A--CAA-----------AA--------A----T--------ATTTC--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAA-GTGAGT-AA-TCATA-TTCAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GA--TAATGA--------TATAA------T------A--AAAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGTC-AAGTAT-A---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTT-ATCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TA---TTTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT--AAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TC-TAT-GTGCC-TTTTTT-TTTAAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
Reference ( family-103 ) : TTAGA-ACT-TT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------T-----------GN-A----ATA-T-------------------ATCCG-TATC---GTCCTGCAGTAATCT-AT-GAATAT-AT--GTAAAT-ATTTACA------T------AGGTTT---GACA-TA-TTAA--TGGAATTAATGAAAACTTTGAGCCCGATCTC-T-GT-ATA-AAGT-AAGACAAT---TTCACGG-AATA--GTGAAAAAG-T--AATAGAA-TAATTTCATTGATT-TTCATGAA-A--CAA-----------AA--------A----T--------ATTTN--AATTTCCTATTGAATGTCATTTTG--A-AATTAT--G-CGT-GAATCC--TACTCAA-GTGAGT-AA-TCATA-TTCAAAGAAT-TAAANAAATA-TT---TAAGATAAA-TAAAACGAAT-GA--TAATGA--------TATAA------T------A--AAAAT-AACA-------A-C---ATAAAAAAAAAG----CCCGATAANAAAAAATAT--TGCACTCCGT--AAGTAT-A---GGAA-TCAAA-CAC-AG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTT-TGCTT-ATCAATATTTGTT---TGGTCGTAAAATTCACATA----TATCTGTATGAATTTTCAAACAAATC-ATGAAA-CCAC-GANTCTATTCAA---CTTCTCTCCG-CTG---AACTT-AAATTTACTA-ACTCTCCATACA-TTT-TA---TTTA--AATTATCTTTTT-------C-GTTTTATTGGCGTTATCTAATG--ATT-AAAACAGATCCAAGATTTACATCGACGGACGGCTCGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTGAAATTNAGGATTNTGTGTAAAGGATAGTGATAATTTAAGGTGGATTAA-T-CGTAAG-G--T-ATCAGGCTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCA-ACAT-CGCCCCCCCC--CCCCAACACACA--TTT-GATATATTGCATCTTTAT-CATTGCATGCAAAA-TC-TAT-GTGCC-TTTTTT-TTTAAGTTAATGAAAGAAAATT-GAAAATAC-AAGAGTA-A--TTAA----TAATT-----CAAC-GACTT-TACATCTATTT--TGGNCATGCATACGGTA-A-AGGTC-ACTTTTTACCATTAAAA-TTTCGTAA-TCGGGCTCGGA-CTGCATTATATT
gi|1 : TTAGA-ACTATTGCT-C-------TCTTTCGGGC---G--AGA-T-AGGGC-GAGGAAAT-AGCTAGGCTAA----------CTATTATTTC------AT-GATTTT--------------------T-----------GG-ACAGCATACT-------------------A-CCGCTATTTTAGTCATGCACTAATCTCATTGAATAT-AT--GTAAAT-ATTT-CATGTATTT------AGTTTT---GA-A-TAGTTAATGTGGAATTAATGAAAA-GTTGATACCGATCTCTT-GCAATA-CAGT-AAGACA-----TTCAAGGAAATA--GTGAAAAAG-TGAAATAAAA-T-ATTTCATTGATTGTTC-TGAA-AGCCAA-----------AA--------AGCGCTATGAAAGGATTTT--AATT--CCATTTACTGTAATTTTG--A-CATTAT--ATCAT-GAAT-C--TACTCAAGGTGAGT-AA-TCATATTTCAAAGAATGTAAATAAATA-TTAGATAAGATA----AAAACAATT-GATGTGATGA--------TATAA------T------AACAAAAT--ACA-------A-CCAAATTAAAAAGAAGAATCCCCGATAAC-AAAAATAT--TGCACT-CGTTGAAGTATAA---GGAA-TC-AA-CAC-AG-TTACAATCATG-GTTAGC----ATGAAATCC--TCGTT-TGCTTAATCAATATTTTTT---GGGTCGTAAAATTCACATA----TG-----ATGAA-TTTCAAA-AAATCTATGAAC-TAAC-GATACT-TTCAAGACTTTCTCTCCGACTG---TCCTT-CAAATTACTA-ACTCTCCATACA-TTT-TATATTTTA--AATTATCTTTTT-------CAGTTTTATTGGTGTTA--TAAT----TT--AAACAGATTCAAGATTTACATCGATGGACGG-TCATCCACTTTT
gi|1 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttGGATTAAAT-CGTAAG-T--T-ATCAGGATC-GGGTATCCCTGAATTAACTC--GTACGCGCA-A-AT-CCCGCCCCCC--CCCCAAC---CA-------ATATGTTG-------------TG--TG---------TAT-GTGCG-TTTTTTCTTTAAGTTAATGAAAGAAAATTGGAAAATACAAAGACTT-A--TTAAG---CAATTAAGTGCAAT-GATTTACACATCTATTT-----GCATGCATACGGTATACAGGTCAACTTTTTACCATTAAAAGTTTCGTAAGTCGGGCT-GGA-CTGCATTATATatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaggattaaatcgtaagttatcaggatcgggtatccctgaattaactcgtacgcgcaaatcccgccccccccccaaccaatatgttgtgtgtatgtgcgttttttctttaagttaatgaaagaaaattggaaaatacaaagacttattaagcaattaagtgcaatgatttacacatctatttgcatgcatacggtatacaggtcaactttttaccattaaaagtttcgtaagtcgggctggactgcattatat
gi|10 : atcacttgagtgcgacgtaaccgagcgttcacgaaacctgtcgttagtgcccgcttcaaatcttaaaccgatccatgtagatgtttacgtcctactttttagaactattgctctctttcgggcgagatagggcgaggaaatagctaggctaactattatttcatgatttttggacagcatactaccgctattttagtcatgcactaatctcattgaatatatgtaaatatttcatgtatttagttttgaatagttaatgtggaattaatgaaaagttgataccgatctcttgcaatacagtaagacattcaaggaaatagtgaaaaagtgaaataaaatatttcattgattgttctgaaagccaaaaagcgctatgaaaggattttaattccatttactgtaattttgacattatatcatgaatctactcaaggtgagtaatcatatttcaaagaatgtaaataaatattagataagataaaaacaattgatgtgatgatataataacaaaatacaaccaaattaaaaagaagaatccccgataacaaaaatattgcactcgttgaagtataaggaatcaacacagttacaatcatggttagcatgaaatcctcgtttgcttaatcaatattttttgggtcgtaaaattcacatatgatgaatttcaaaaaatctatgaactaacgatactttcaagactttctctccgactgtccttcaaattactaactctccatacattttatattttaaattatctttttcagttttattggtgttataatttaaacagattcaagatttacatcgatggacggtcatccacttttatgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttgagtttcatatcaATCGCATCTTTAT-CATTACATGCAAAGTTC-TAT-ATATC--TTTTT-TAAAAGATAATAAAAGAAAATT-G-AAATAT-AAGAGTA-AAGTGAT----TAATT-----CAAC--ACTT-TAAAATTATTT--TCGCCA
gi|11 : cG-AATA--GTGAAAAAG-T--AATAGAA-TAATTTCAGTGATT-TTCATGAA-A--CAG-----------------------------------ATTTC--AATTTCCTATTGAATATCATTTTGACA-AAACAA--G-CGT-GAATCC--TACTCAA-GTGAGTAAA-TCAT
gi|12 : AACTC-CGCAGTCGCATACATTCGTCCCCCTCAACCCCCACCCCCA--C------ATATTACATCTTTAT-CATT------------C-TAT-GTACC-TTTTTA-TAAAGGTTAATGAAAGAAAATT-G-AAATAC-AA
gi|13 : GG-T-ACATC-TA--ATATTAACTAGGCTAATGTTCTGTCGCTA------TTTTGTTATGA--TTT--------------------T-----------GG-A----A-G-T-------------------ATCTG-TATC----TTCTGCAGTAATCA-AT-CAGTAC-AT--GTAatg
gi|16 : TAA--TGGAATTAATGAAAACTTTGAGTCCGATCTCTT-AT-ATA-AAGTAAAGACAA----TTCACAG-GATA--GTGAAAAAATT--AATAAAA-TAATTTCATTGATT-TTttgtatataat
gi|17 : CAACACACA--TTTTGATATATTGCATCTTTAT-CGTTGCATGCAAAA-TTATAT-GTGC---TTTTT-TTTAAGTTATTGAAAGAAAATT-GAAA
gi|18 : GAATCA-TGGACATTTTGAGCCCGATCTT-TAGT-ATA-AAGTAAAGACAAT---TCC-TGA-AATG--TTGAAAAAT-G--AATAGAG-TA
gi|2 : ttcaTTAGA-ACT-TT-CT-C-------TCT-----GC---GGCAGGCT-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-----TT--------------------T-----------GC-A----ATA-T-------------------ATCCG-TATT---GTCCTGCC-TAATCT-AT-GAATATCAT--GTAAAT-ATTTACA------TGTTATTAGGTTT---GACA-TA-TTA---TG-AATTAATGAAAACTTTGAGCCCGATCTC-T-GT-ATA-AAGT-ATGACAAT---TTCACAG-AATACGGTGAAAAAG-T--AATGAAA-TAATTTCATTGATT-TCAATGAA-A--CAA-----------AACGAATGAAA----T--------ATTTC--AATT-CCTATTGAATGTCATTTTG--A-AATTAT--G-TGT-GAACCC--TA-TCA--GTGAGT-AA-TCATA-TTCAAAGAAT-TAACTAAATAATT---TAAGATAAA-TAAAACGAAT-GA--TAATGA---------AT--------T------A--AAAATCAATA-------A-C---A-AAATACAAAC----CCCAATAAAAAAAAATATATTGCACTCCGTC-AAGTAT-A---GGAAATCAAAACACCAG-TTA-AATCATG-GTTA-T----ATGCA--TC--TCGTTCTGCTT---TAATATTTGTT---TGTTCGTAAAATTCACAT-----TATCTGTATGAATTTTCAAACAAATC-ATGAAAACCACCGAATCTATTCA----CTTATCTCCG-CTG---AACTT-AAATTT-CTA----CTCC-TACAATTT-TA---TTTATAAGTCATCTTTTTAAAACCCC-ATTTTATTGGTGT-ATCT--TG--ATTTAAAACAGATCCAG--TTTACATC-ACGGACGGC-CGTCCACTTTTTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATTTAGGATTTTATATAAAGGATAGTGATAATTTAAGGTAGATTCA-T-CGTAAA-GGTT-ATCAGGCTC-GG-TA---CTGAATTAACTCGCGTAGGCGCA-ACAT-TGCCCCCCCC--CCCCGACACACATTTTT-GATATATTGC-TCTTTAT-CATTGCATGCAAAA-AT-TATAGTGCCTTTTTTT-TTTAAGTTAAGCCAAGAAAATT-GAAAATAC-AAGAG----------------ATT-----CAACGGACTT-TACATTTATTT--TGGGCATGCATACGGTA-A-AGGTC-ATTTTTTA--ATTAAAA-TTTCGTAA-TCGGGCTCGGAGCTGCATTATATT
gi|21 : ATGCATATGATAGA-AGGTT-A---TTTA--AATAAAA-T--CGTAA-TCGGGCTCGGA-CTAC-TAATAT
gi|3 : t-ACT-TT-CC-CGTGCATGTCT-----AC---GA-GCG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TAT--------------------T-----------GTCA----ATA-TTTTCTCACGATTTTAGAATATCCG-TATC---GTC-TGAAGTAATCT-AT-A-----------TAAAT-ATGTACA------TGA----AGGGTT---GACA-------A--TGGAATTAATGAAAACTTTGAGCCCGATTTC-TTGT-GTA-AAG-----ACAAT---T-CACAG-AATA--GTAAAAAAG-T--GATAGAA-TAATTTAATTGATT-TTCATGAA-A--CAA-----------AA--------AC---T--------ATGTA--AATTTTCTATTGAATGTCATTTTG--T-TATTATATG-CAT-GACTCC--TGCTCAA-GTGAGT-AAATCATA-TTCAAAGAAA-CAAAATAATA------------AAA-TAAAACGAAT--A--TAATGAACTTAAAATACAAACAAACT------A--AAAAC-AACAGTGCTCAA-C---ATAAAAAAAAAA----CCTGATCACAAAAAATAT--CGCACTC---------AT-ATCCTGAA-TCAAA-CAC-AGTTTA-AATCATG-GTTA-T----ATGCA--TCCATGGTT-TGCTT-AT-A----TTGTTAAATTGTCGTAAAACTTACATACATGTATCTGTATGAATTTT-AAACAAATC-ATGAAA-CCAC-GACTCTATTCAA---CTTCTCCC---CTGAATAACTTGAAATTTACCACATTC-CCATACA-TTTCTA---T-----AATTATCTTTTT----------TTTTTTTTACATT-TCTAATGGCATG-TAAACAGATCCAAGATTTACAT-GACGGAGAGCTCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTTTGATTTTAAA--TAAAGATTGTG-GTAA----------------AAAGTGAATTAA-T-CTTAAATG--TGATCAGGCTCGGG-TA--CCTGAATTATCT
gi|4 : caggcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattacgtttacgatcTTAGATACT-TT-TT---------TCT-----GC---GG-AGG---AGATTATA--AAAATAACTAGGT-------------CTA--------------T-A--TTT--------------------T-----------CT-A--------------------------------------------------TGATTT-G--GAATAT-ATCCATGATT-GTTCAC-------T------AGGTTTTGAGA-A-TA-TTAA--TGGAATTAA-GAAAA-TTTGAGCCCGATCTC-T-TC-ATATAAGT-AAAGAAATATATTCACAG-AAT---GTGAAAA-G-T--AATAAAAATAATTTCATTGATT-TTCATGAATA--CAATAAAACGCTATAA--------A----T--------ATTTTTAAATTTCCTAT-GAATGTCATTTTG--ACAAATAT--G-CGTCGAATTCGCTACGCAA-TTGAAT-AA-T-ATA-TTCAAAGA-T-TAAAAAAATA-CT----AAGATAAAATAAAACGAATTGA--TAATCA--------TTTAA------TCAATTAA--AAAAG-AATA-------AAC---ATAAAAAAAAGG----ACCGATAAAAAAAAATAT--TG-ACTCTG---AAGTAT-A---GAAA-T-AAA-CAC-AG-TTT-AATACTGTATTA-TTGCCATTCA--TC--T-GTT-
gi|5 : atgtgcgactaacgagcatttcacaaacctgtcgtaatcatagattcagattgcgatttacctccaacgtGTGAATTAA-TTCGAAAG-G--T-ATCAG-CTC-GG-TA--CCTGAATTAACTC-CGTAGGCGCC-ACAC-TG-CCCCCCC--CCCCAAC-CACA--TTT-GATATATTGCATC-TTATACA-TGCATCCAAAA-TC-TAT-G-----TTTTTT-TTTAAGTCAATGAAAG-AAATT-G-AAATAC-AAAAGTATA--TTAACAATTAATT-----CAAT-GACTT-TA---CTATTTAGTGGCCATGCATACGGTA-G-AAGTC-ACATTTTACCATTAAAA-TTTCGTAA-T-GGGCTCGGA-CTGCATTATATTc
gi|6 : TTAGA-ACT-TT-TTTC-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGT-------------CTA------C------AT-A--TTT--------------------T-----------CT-A----ATG----------------------------------ATTTTG-------------GAATAT-AT--CCATATTGTCTGCAC-----T------AGGTTT---GAGAATA-TTAA--TGGAATTAATGAAAACTTTGAG
gi|7 : tctcccatgatctggcggtcgtttcaataacaaatcgtagatcgtagcacgtaacgagcatttcacgaaacctgtcgtaatcatagcacttacgattgcgatttacctccaacgtTTAGA-ACTCTT-CT-C-------TCT-----GC---GG-AGG-T-AGATT-TA--AAATTAACTAGGC-------------CTA------C------AT-A--TTT--------------------TCTCATGATTTTGG-A----ATA-T-------------------ATCCG-TATC---GTC-TGCAGTAATCT-AT-GAATGT-A-------------------------------GGTTT---GACA-------A--TGGAATTAATGGAAACTTTGAGCCCGATCTCTT-GT-GTA-AAGT-AAAGAAAA---TTCACAG-CATA--GTGA------------------AATTTCATTGATT-TTCATGAA-
gi|8 : ttTTAGA-ACTCTT-TT-C-------TCT-----GCATGGG-AAG-TTAGATT-TA--AAATTAACTAGGC-------------CTA------G------AT-A--TTTTCAATATTTTCTCATTATTTT-----------GG-A----ATA-T-------------------ATCCG-TATG---AT-CTGCAGTAATCT-AT-GAATAT-AT--GTACA--AGTTATA------T------AGGTTT---GAC-------AA--TGGAATTAATGAAAACTTTGAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTCCAGGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTACGTTTACGATCACTTTGACGTGCACGTATAACATATATTATGAAGTCACAACCAGTTCGTACATTTGTATGTTTT
Unaligned ( gi|14 ): GAATACCTACGGATTGTTAGAAGACCTGGCGGTCGTTTCACTATCTGATCGTAGATCGTAATCGTACGATTACGTTTGCGATCACCTTCACGTGCACGTACACGAG
Unaligned ( gi|15 ): TAACAACCGTATAGATCGTAAGCGTGCGATCATTATGACGTATGTCCATGAGCGTTTTCACGAAACCTGTCGTACACGTAGCACTTACGACTGCGATA
Unaligned ( gi|19 ): GAAACCTGCTGGTCGTTTCAGTAACCGATGGTAGATAGTAAACGTAAAATTCACTTTAACGTGCACGTATAC
Unaligned ( gi|20 ): CTGTACGTGTTACAAGAACTTACGATTGCGATTTAGGTCCAACTTTTAGAACTCTTCTCTCTGC
Unaligned ( gi|22 ): GGAATACCTACGGATTGTTGGAAGACGTTGACGATTGTCTTA
Unaligned ( gi|23 ): ATACCTACGGATTGTTGGAAGACCTGGTCGATTCAATGTTTA
Unaligned ( gi|24 ): ATACCTACGGATTGTTGGAAGACCTGG