lowQualScore : 1111111111111111111111111111 1111111 1111111111111
lowQualScore : 3 4444444 22 8888888888888888888888888888888888888888888888 1 1 111 4444444444444444444444444444444444444444444 1111111111111111111111111111 3333333 444444 1 1111111111111 11 1 333333333 222 3333333333333333333 1111 11111 11 22222222222222 111 111111111
lowQualScore : 3 2222222 00 1 4 1111111111111111111111111111111111111111111111 3 5 0 2 5 0 1 6 3 666 4444444444444444444444444444444444444444444 0 6 5555555555555555555555555555 2 2 6 0000000 6 3 333333 8 7 0 1111111111111 6 6 7 88 0 0 4 0 3 333333333 7 1 222 33333 22 1 2 88 2222222222222222222 0000 22 1 1 333 33333 22222 3333 77 22 1 22 3 00000000000000 7 1 1 3 555555 2 2 55555 222 444444444 2 88
lowQualScore : . ....... .. . . .............................................. . . . . . . . . . ... ........................................... . . ............................ . . . ....... . . ...... . . . ............. . . . .. . . . . . ......... . . ... ..... .. . . .. ................... .... .. . . ... ..... ..... .... .. .. . .. . .............. . . . . ...... . . ..... ... ......... . ..
lowQualScore : 0 9999999 99 9 7 1111111111111111111111111111111111111111111111 2 0 0 5 0 4 9 5 4 999 8888888888888888888888888888888888888888888 7 0 2222222222222222222222222222 5 5 0 0000000 0 0 000000 3 0 7 0000000000000 0 7 0 33 8 9 0 5 6 888888888 6 9 666 11111 44 7 4 00 3333333333333333333 7777 22 6 6 999 33333 66666 7777 44 66 7 77 2 44444444444444 6 9 9 8 888888 0 1 33333 333 666666666 7 55
consensus : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGTT--AAAATT-GATC-TT-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATNCCTGTGAA-GAAACTTTTAGAAGAAGACTTTTTGAAAA--G--TTTGAAAA--------NAA-A----------AC-CCAAACCACAGATCGACGCCATTAATC-----TGTCAAT-A-TA-CTAG-GCCTAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGNCACNGACCTCACCTCTNACGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAACGTGGCACNTCTTGATGCTAGACAGATCCAAGTAAACTTTCAGTAGACAGCGGAGTAGGAAATTCCAGATAGAGCAAGCAGAGGGAA------TGGTCAAAAGAAGTAGAATAGA--ACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTNTC-AGT-CA-TTCTCCAA--G--A--A-TGCCTGAAA-CTTT-TA----G---G---C---TTTCC--T-GG--A-AATGCCT-G--ATCAA--AA----C----AGG-CATTTCTCG-GGAAT-GACTGA-AC-G--T--------T-C-AGG-CAT-TT--CCT-GA-GA-ATGA-----C-T-AGA-N-T-----C-CG--GATTTGACTGTAA
Reference ( gi|2 ) : CTTCAGAGTGATTTCTTATTAC-------CATCTTGCATGTCTCAAATTAGTTTTAAAATTTGATC-TT-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAA-GAAACGTTTAGAAGAAGAATTTTTG--AA--G--TTAGAAGA--------TAA-A----------AC-CCAAGCCACAGATCGACGCTATTAATC-----TGTCAATAA-TA-CTAGTAATTAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACTTCAC-------GTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTAGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTTA-TAGACAGCAGAGAAGGAATTTCCAGATGGAGCAAGCA------A------TGATCAAAAGAAGTAGAATATA--ACTCGCTCCGGCCCAGAATTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCATTG-ATTATC-AGT-C--TTCTCCAA--G--A--A-TGCCTGAAA-CTTT-TA----G---G---T---TTTCC--T-GG--A-AATGCCT-G--ATCAA--AA----C----AGG-AATTTCTTG-GGAAT-GACTGA-AC-A--T--------T-C-AGG-CAT-TT--CCT-GA-GA-ATGA-----C-C-AGA-A-T-----C-CG--GATTTGACTGTAA
gi|1 : CTTCAGAGTGATTTCG-ATTAC-------CATCT-GCATGGCTCAAATTAGTT--AAAATT-GATC-TTTGC-------TG-TAGCC---------A--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAA-GAAATCTTTAGAAGAA---TGTTTG--AAAAG--TTAGAAAA--------AAA-ACCCAAAACAAAC-CCAAGCCACAAATCGACACCATTAATC-----TGTCAATAA-TAATTAG-GCCTAGTCAATGAAACTTCTGACATGGCTAACTTACTTGTTGGCCAAGACACCGACCTCACCTCTCATGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAATGTGGCACGTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGATAGCAGAGAAGGAAATTACAGATAGAGCAAGCAGAGAGAA------TGGTGAAAA-AAGTTGAATAGA--ACTCACTCCGGCCCAGAAGTGGAAGTCAAAATTACA-ATCAGGCAAA-CCTGGAAATCTGAGGC-------TCTC-A------TTCTCCAA--G--A--A-TGCCTGAAA-CTTT-TA----G---A---C---TTTCC--T-GG--A-AATGCCC-G--ATCAA--AA----C----AGG-AATTTCTTG-GGAAT-GACTGG-AC-T--T--------T-C-AGG-CAT-TT--CTT-GA-GA-ATGA-----T-T-AGA-T-T-----C-CG--GATTTGACTGTAA
gi|3 : gCTTCAGAGTGATTTCT-ATTAC-------CATCT-GCATGTCTCAAATTAGTT--AAAATT-GATC-TTTGC-------TG-CAGTCCTTAATTCGGCTAAGCTT-GAACATGGCT-GAAAATGCCTGTGAA-GACGCTTTTAGAAGAA---TTTTTG--AA--AACTTTGAAGA--------AAA-A----------AAACCACGCCACAGATCGACGCCATTAATC-----TTTTA----------------T-GTCAATGAAACTTCTGACATGACTAACCTACTTGTTGGCCAAGCCACAGACCTCACTTCTAACGTCGACCAAATTGATGATATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAAATCCAAGTAAAC----AGTAGACAGCAGAGTAGGAAATTCCAGATGGAGCAAGCA------GAGAGAGTGGTCAATAGAAGTAGAATAGA--ACTCGCTCCGGTGCAGAAGTGGAGGTCAAAATGATA-ATCAG-CAA--CCTGGAAATCTGAGGCTTTG-ATTTTT-AGT-C--------AA--G--A--A-TGCCTGGAA-CATT-TA----G-------C---TTTCT--T-GG--A-AATGCCC-G--ATCTA--AA----C----AGG-AATGTCTTG-GGAAT-GACTGA-AC-T--T--------T-C-AGG-CAT-TT--GCT-GA-GA-ATGA-----C-T-AGA-T-T-----C-CG--GATTTtatgtatatttcttgtccaattaatgagtctactacaaaaaaagcttt
gi|5 : CTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGTTAGAAA----GAGA-TT--------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAG-GAAACGTTTAGAAGAAGACTTTTTGAAAA--G--TTTGAAAA--------AAA-A----------A---CAAACTAC
gi|7 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaaCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGTTAGAAA----GAGA-TT--------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAG-GAAACGTTTAGAAGAAGACTTTTTGAAAA--G--TTTGAAAA---------AA-A----------A---CAAACTACctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|4 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgagcctcatatttccagatctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaaCTTCAGGGTGATTTCT-ATTAC-------AATCTT-CATGTCTGAAAGTAGTT--AAAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-GAAAATTCCTGTGAA-GAAACTTTTTGAAGAAAA--TTTTG--AAT-T--TTAGA--A--------TAA-A----------ctcttactgaagatcaagtatca
gi|6 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgttttgatcagtcatttccaggaaagcctaagcgttataggtatacttagagaatgactgaaaatgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagCTTCAGGGTGATTC--TAT-AC-------AATCTT-CATGTCTGAAAGTAGTTT-AAAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-G-AAATTCCTGTGAA-G-AACTTTT----GAAGAAATTTTG--AAT-T--TTAGA--A--------TAA-A----------
gi|9 : ttacagtcaaatctggaattgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgtttgatcagtcatttcaggaaagcctaacgttataggtatacttagagaatgactgaaaatgccgtagatttaaagacttttcattattgtcatcggacccccagtctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagTTCAGAGTAAGTTCT-ATTATA------CATCT-GCATGTCTCCAATTAGTAC-AAAATTT-ATAATT-GC-------TG-CAGCC---------C--AAGCTTTGAACATGGCT-GAAAATGC-TGTGAAAGAAAT-TTCAGA----GATTTTTTG--AAAAG--TTTGAAAAAAAAACCGTAACA----------AC-CCAAACCACAGATCGACACCATTAATCTTTTGTGTCAATCATTA-CT
gi|13 : TTAGAATTAGATCGTT-GCTGCAGCCTGTCAGCT------------AAGCTT-AAGCATGGCT-GAAAATGCCTGTGAA-ATAACTTTT---TGAAGACTTTCTGAAAA--G--TTTGAAA----------AA-A----------AC-
gi|14 : agtagGACAGCGGGGTAGGAAATTCCAGGTAAAGGAAGCAGAGGGAA------TGGTCAAAAGAATTAGAATATAGAACTAGCTCTAGCCCAGAAATGGAGGTCAAAATGACA-ATCAgacgttttaccaaatgccaagtatcaggaaatt
gi|8 : CTCCGGCCCAGAAGTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGGAATCTGAGGCTCTG-ATTTTC-AGT-CA-TTCTCCAA--G--A--A-TGCCTGAAA-CTTT-TA----G---G---T---TTTCC--TGGG--A-AATGCCC-G--ATCAA--AA----T----AGG-AATTTCTTG-GGAAT-AACTGA-AC----T--------T-C-AGG-CAT-TT--TCT-GA-GA-ATGA-----C-T-AGA-T-T-----C-CG--GATTTGACTGTAA
gi|5 : gGGACTGGTGGTCAAAATGATATATCAGGCAGA-TCTGGAAATATGAGGCTTTTCATTTTC-AGT-CA-TTCTCCAA--A--A--A-TGCCTGACA-CTTT-TA----G---G---C---TTTCC--T-GG--A-AATGCCC-G--ATCAA--AA----C----AGG-CATTTC-TG-GGAAT-GACTGA-Atatcactcactaaatgcatctgtggtgatttaaacccaatctccaaagtgaggt
gi|7 : cGGACTGGTGGTCAAAATGATA-ATACGGCAGA-TCTGGAAATATGAGGC--TC-ATTTTC-AGT-CA-TTCTCCAA--A--A--A-TGCCTGACA-CTTT-TA----G---G---C---TTTCC--T-GG--A-AATGCCC-G--ATCAA--AA----C----AGG-CATTTC-TG-GGAAT-GACTGA-Aattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|4 : cACTGGGGGTCCGAATGACA-ATAATGAAAG-TCTTTAAATCTACGGCTTTC-ATTTTC-AGT-CA-TTCTCTAA--G--T--A-TACCTATAA-CGCT-TA----G---G---C---TTTCC--T-GG--A-AATGACT-G--ATCAA--AA----C----AGA-AATTTCATT-GGAAT-GACTGA-AC-T--T--------T-C-AGG-CATGTTTGCAT-TA-GA-ACTA-----C-T-ACA-T-T-----C-CA--GATTTGACTGTAAattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|6 : ACTGGGGGTCCGA-TGACA-ATAATGAAAAGTCTTTAAATCTACGGCATT----T-TC-AGT-CA-TTCTCTAA--G--T--A-TACCTATAA-CGTT--A----G---G---C---TTTCC--T-G---A-AATGACT-G--ATCAA--A-----C----AGA-AATTTCATT-GGAAT-GACTGA-AC-T--T--------T-C-AGG-CATGTTTGCAT-TA-GA-ACTA-----C-T-ACA-ATT-----C-CA--GATTTGACTGTAActaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|10 : GGGGGTCAAAATGACA-ATCAAACAAA-CCTGGAAATCTGAGGCTTTG-ATTTTCAAGT-CATCTCTCCAA--G--A--A-TTGCTGAAA-CTTT-TA----G---GC--C---TTTCC--T-GG--A-AATGCC--G--ATCAAATAA----C----AGG-AATTTCTTG-GAAATAGACTGA-AA-T--T--------T-C-AGG-CAT-TT--TCT-GA-GA-ATGA-----CTT-AGA-T-T-----C-CG--GATTTGACTGTAActaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagcttcagggtgattctatacaatcttcatgtctgaaagtagtttaaaattagatctctcccgcagttaagcttgaatatggctgaaattcctgtgaagaacttttgaagaaattttgaattttagaataaa
gi|11 : GGTCAAAATGACA-ATCAGGCAAA-CCTGGAGATCTGAGGCTTTG-GTTTTC-AGT-CA-TTCTCCAA--G--A--A-TGCCTTAAA-CTTT-TA----G---G---C---TTTCC--C-GG--A-AATGCCC-G--ATCAA--AA----C----AGG-AATTTCTTG-GGAAT-GACTGA-AC-T--T--------T-C-AGG-CAT-TT--CCT-GA-GA-ATGA-----C-T-AGA-T-T-----C-CG--GATTTGACTGTAAa
gi|1 : tCAGTCAAA-TCCGGAA-TCTAA------------TC-A------TTCTCAAG--A--A--A-TGCCTGAAA-GTCC-------A---G---TCA-TTCCC--A-AG--A-AATTCCT-G--TTTTG--AT----C----GGG-CATTTC-CA-GGAAA-GTCTAA-A--AGTT--------T-C-AGG-CAT-TC--TTG-GA-GA-ATGAGAGCCT-C-AGATT-T-----C-CA--GGTTTGCCTG
gi|10 : gcttcagagtgatttcgattaccatctgcatggctcaaattagttaaaattgatctttgctgtagccaaagcttgaacatggctgaaaatgcctgtgaagaaatctttagaagaatgtttgaaaagttagaaaaaaaacccaaaacaaacccaagccacaaatcgacaccattaatctgtcaataataattaggcctagtcaatgaaacttctgacatggctaacttacttgttggccaagacaccgacctcacctctcatgtcgaccaagttgatgacattggctttgttgaaaatgtggcacgtcttgatgctagacagatccaaataaactttcatagatagcagagaaggaaattacagatagagcaagcagagagaatggtgaaaaaagttgaatagaactcactccggcccagaagtggaagtcaaaattacaatCAGTCAAA-TCCGGAA-TCTAAG-----------TC-A------TTCTCAGA--A--A--A-TGCCTGAAA--TTT-CA--------G---TCTATTTCC--A-AG--A-AATTCCT-GTTATTTG--AT----C-----GG-CATTTCCAG-GAAAG-GCCTAA-AA-G--T--------T-T-CAG-CAA-TT--CTTGGA-GAGATGA-----C-T-TGA-A-taatatgtatatttcttgtccaattaatgagtctactacaaaaaaagcttt
gi|12 : gggggtcaaaatgacaatcaaacaaacctggaaatctgaggctttgattGGAAATCTGAGGCTTTCCATTTTC-AGT-CATTTCTCCAC--A--A--ACTGCCTGAAATCTTT-TA----G---G---CA--TTTCC--T-GGGAA-AATGTCC-A--GTCAA--AA----C----AGG-ATTCTCTTG-GGAAT-GACTGACACTG--T--------T-A-AGGGCTT-TT--CCT-GA-GA-ATGA-----C-T-AGA-T-T-----C-CG--GATTTGACTGTAAtaaa
gi|6 : acatgAAATCTG--GAATTG---TAGT-AGTTC--TAATGCAA--A--C--A-TGCCTGAAA--GTT-CA----G---T---C---ATTCCAAT--G--A-AATTTCT-G---TTTG--AT----C----AGT-CATTTC--A-GGAAA-GCCT-A-AC-G--T--------TAT-AGG-TAT-AC--TTA-GA-GA-ATGA-----C-TGAAA-A-TG----C-CGTAGATTTAA
gi|12 : ttacagtcTGTC-AGT-C--ATTCCCAA--G--AGAA-T-CCTG-----TTT-TGACT-G---GACAT---TTTCC--CAGG--A-AATGCCT-A--A--AA--GATTT-C----AGGCAGTTTGTGGAGAAAT-GACTGA-AA-A--TGGAAAGCCT-C-AG---AT-TT--CCagacttttcattattgtcatcggacccccagtctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagcttcagggtgattctatacaatcttcatgtctgaaagtagtttaaaattagatctctcccgcagttaagcttgaatatggctgaaattcctgtgaagaacttttgaagaaattttgaattttagaataaa
gi|3 : acatgttacagtcaaatccggaatctagtcattctcaggaaaagcccttaacagATCTAGT-CA-TTCTC--A--GCAA--A-TGCCTGAAA-GTTC-------A---G---TCA-TTCCC--A-AG--A-CATTCCT-G--TTTAG--AT----C----GGG-CATTTCCAA-GAAA---GCTAA-AT-G--T--------TCC-AGG-CA--TT--CTT-GACTA-AAAA-----T-C-AAA-G-C-----CTCA--GATTT
gi|8 : cttcagagtgatttctattaccatctgcatgtctcaaattagttaaaattgatctttgctgcagtccttaattcggctaagcttgaacatggctgaaaatgcctgtgaagacgcttttagaagaatttttgaaaactttgaagaaaaaaaaccacgccacagatcgacgccattaatcttttatgtcaatgaaacttctgacatgactaacctacttgttggccaagccacagacctcacttctaacgtcgaccaaattgatgatattgactttgttgaaaacgtggcacttcttgatgctagacaaatccaagtaaacagtagacagcagagtaggaaattccagatggagcaagcagagagagtggtcaatagaagtagaatagaactcgctccggtgcagaagtggaggtcaaaatgataatcagcaacctggATCTAGT-CA-TTCTCAGA--A--A--A-TGCCTGAAG---TT-CA----G---T---TA--TTCCC--A-AG--A-AATTCCT-A--TTTTG--AT----C----GGG-CATTTCCCA-GGAA--AACCTA-AA-AGTT--------T-C-AGG-CAT-TC--TTG-GA-GA-ATGA-----C-TGAAA-A-T-----C-tccggattt
gi|11 : gttacagtcaaatccggaATCTAGT-CA-TTCTCAGG--A--A--A-TGCCTGAAA-GTTC-------A---G---TCA-TTCCC--A-AG--A-AATTCCT-G--TTTTG--AT----C----GGG-CATTTC-CG-GGAAA-GCCTAA-AA-G--T--------T-TAAGG-CAT-TC--TTG-GA-GA-ATGA-----C-T-GAA-A-A-----C-Cagagcctcagattcccaggtttgcctgattgtcattttgacccccacttctgggccggagtatcactcactaaatgcatctgtggtgatttaaacccaatctccaaagtgaggt
gi|4 : tggtcaaaatgacaatcaggcaaacctggagatctgaggctttATC-AGT-C--ATTTCCAG--G--A--A-AGCCT-AAG-CGTTATA----G---G---T---ATACT--T-AG--AGAATGACT-G--Atccggatttgactgtaa
gi|5 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgttttgTC-AGT-C--ATTCCCAG--A--A--A-TGCCTG-----TTT-TGATCGG---G---CA--TTTCC--A-GG--A-AA-GCCT-------AA--AAGTGTC----AGG-CATTTTTGG-AGAAT-GACTGA-AA-A--T--------aaatgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|7 : ctTC-AGT-C--ATTCCCAG--A--A--A-TGCCTG-----TTT-TGATCGG---G---CA--TTTCC--A-GG--A-AA-GCCT-------AA--AAGTGTC----AGG-CATTTTTGG-AGAAT-GACTGA-AA-A--TGAGCC---T-C-A---TAT-TT--CCA-GA-gaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|4 : ctTC-AGT-C--AT-TCCAATGA--A--A-TTTCTG-----TTT-TG----ATCAG---TCA-TTTCC--A-GG--A-AA-GCCT-A--AGCGT--TA----T----AGG-TATACTTAG-AGAAT-GACTGA-AA-A--T--------tctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|4 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagtCAA--A--C--A-TGCCTGAAA--GTT-CA----G---T---C---ATTCCAAT--G--A-AATTTCT-G--TTTTG--AT----C----AGT-CATTTC-CA-GGAAA-GCCTAA-GC-G--T--------TAT-AGG-TAT-AC--TTA-GA-GA-ATGA-----C-TGAAA-A-TGAAAGC-CGTAGATTTAAgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|15 : ttacagtcaaatctggaatgtagtagttctaatg--G--A--A-TGACTGAG--CTTT-CA----G---G---CA--TTTCC--T-GA--G-GATGACTAG--ATTAagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|7 : A-TTTT-CA----GTC-A---T---TCTCC----AA--A-AATGCCT-G--AC------A----CTTTTAGG-C-TTTCCTG-GAAAT-GCCCGA-TC-A--A--------AAC-AGG-CAT-TT--C-T-GG-GA-ATGA-----C-cggatttgactgta
gi|5 : cttcaTTCC--C-AG--A-AATGCCT-G--TTTTG--AT----C----GGG-CATTTC-CA-GGAAA-GCCTAA-AA-G--TG-------T-C-AGG-CAT-TT--TTG-GA-GA-ATGA-----C-gagcctcatatttccagatctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|15 : cttcagtcaGAAT-GACTGA-GC-T--T--------T-C-AGG-CAT-TT--CCT-GA-GG-ATGA-----C-T-AGA-T-T-----A-CG--GATTTGACTGTAtgaaaatgaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|5 : AAT-GCCTGACAC-T--T--------T-T-AGG-C-T-TT--CCT-GG-AA-ATGC-----C-C-
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGTAGATAGAATTAGATTTTTGCTGCAGCCTTTTAGCT
Alignments
lowQualScore : 3333333 11 11 1 555555555555555555555555555555555 111 3333333333333333333333 22222 666666666666 1111111 2 11 111 1 1 11 11
lowQualScore : 5 7777777 55 0 1 4 00 8 7 888888888888888888888888888888888 1 4 8 1 1 0 4 444 7 4 1 6666666666666666666666 55555 2 555555555555 1 1 6666666 0 1 0 6 3 2 4 2 4 2 33 1 3 1 4 333 2 3 3 3 3 3 3 3 3 55 5 55 2 3 2 3 3 88 4 8 11 4 4 1
lowQualScore : . ....... .. . . . .. . . ................................. . . . . . . . ... . . . ...................... ..... . ............ . . ....... . . . . . . . . . . .. . . . . ... . . . . . . . . . .. . .. . . . . . .. . . .. . . .
lowQualScore : 0 5555555 99 5 1 4 66 9 8 111111111111111111111111111111111 9 4 9 0 0 7 8 999 3 4 0 5555555555555555555555 00000 5 777777777777 0 0 7777777 7 0 7 7 3 0 0 5 2 5 88 0 6 6 0 000 3 6 6 6 6 6 6 6 6 00 0 00 7 6 2 3 3 11 0 0 00 0 0 0
consensus : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TC-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------ACCCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAATA-CTAG-G-CTAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-ACGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATT-TCTTGGGAAT-GACTGA-AC-TTTCAGG-CAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
Reference ( family-10125 ) : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TT-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATNCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AANAA---------A----------ACCCAAACCACAGATCGACGCCATTAATC-----TGTCAATA-TA-CTAG-GCCTAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGNCACNGACCTCACCTCTNACGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAACGTGGCACNTCTTGATGCTAGACAGATCCAAGTAAACTTTCAGTAGACAGCGGAGTAGGAAATTCCAGATAGAGCAAGCAGAGGGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTNTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCTGATCAA--AACAGGCATT-TCTCGGGAAT-GACTGA-AC-GTTCAGG-CAT-TT--CCTGAGAATGAC-TA-GANTCCGGATTTGACTGTAA
gi|1 : CTTCAGAGTGATTTCG-ATTAC-------CATCT-GCATGGCTCAAATTAGT-T--A-AAATT-GATC-TTTGC-------TG-TAGCC---------A--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAATCTTTAGAAGAA---TGTTTGAAAAGTTAGAA-AAAAA---------ACCCAAAACAAACCCAAGCCACAAATCGACACCATTAATC-----TGTCAATAATAATTAG-GCCTAGTCAATGAAACTTCTGACATGGCTAACTTACTTGTTGGCCAAGACACCGACCTCACCTCTCATGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAATGTGGCACGTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGATAGCAGAGAAGGAAATTACAGATAGAGCAAGCAGAGAGAATGGTGAAAA-AAGTTGA--ATAGAACTCACTCCGGCCCAGAAGTGGAAGTCAAAATTACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTC------------TCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGA-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATT-TCTTGGGAAT-GACTGG-AC-TTTCAGG-CAT-TT--CTTGAGAATGAT-TA-GATTCCGGATTTGACTGTAA
gi|10 : gGGGGGTCAAAATGACA-ATCAAACAAA-CCTGGAAATCTGAGGCTTTG-ATTTTCAAGTCATCT-CTCCAAGAA-TTGCTGAAA-CTTTTAGGCC-TTTCCT-GG--AAATGCC-GATCAAATAACAGGAATT-TCTTGGAAATAGACTGA-AA-TTTCAGG-CAT-TT--TCTGAGAATGACTTA-GATTCCGGATTTGACTGTAAtatgtatatttcttgtccaattaatgagtctactacaaaaaaagcttt
gi|11 : GGTCAAAATGACA-ATCAGGCAAA-CCTGGAGATCTGAGGCTTTG-GTTTTC-AGTCAT-T-CTCCAAGAA-TGCCTTAAA-CTTTTAGG-C-TTTCCC-GG--AAATGCCCGATCAA--AACAGGAATT-TCTTGGGAAT-GACTGA-AC-TTTCAGG-CAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAAa
gi|12 : tGGAAATCTGAGGCTTTCCATTTTC-AGTCAT-TTCTCCACAAACTGCCTGAAATCTTTTAGG-CATTTCCT-GGGAAAATGTCCAGTCAA--AACAGG-ATTCTCTTGGGAAT-GACTGACACTGTTAAGGGCTT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|13 : acatgAGTAGT-T--A-GAATTAGATCGTT-GCTGCAGCCTGTCAGCT------------AAGCTT-AAGCATGGCT-GAAAATGCCTGTGAAATAACTTTT---TGAAGACTTTCTGAAAAGTTTGAA-AAAAA---------
gi|14 : GACAGCGGGGTAGGAAATTCCAGGTAAAGGAAGCAGAGGGAATGGTCAAAAGAATTAGAATATAGAACTAGCTCTAGCCCAGAAATGGAGGTCAAAATGACA-ATCAcgacgttttaccaaatgccaagtatcaggaaatt
gi|15 : GAAT-GACTGA-GC-TTTCAGG-CAT-TT--CCTGAGGATGAC-TA-GATTACGGATTTGACTGTA
gi|2 : CTTCAGAGTGATTTCTTATTAC-------CATCTTGCATGTCTCAAATTAGT-TTTA-AAATTTGATC-TT-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACGTTTAGAAGAAGAATTTTTGAA--GTTAGAA-GATAA---------A----------ACCCAAGCCACAGATCGACGCTATTAATC-----TGTCAATAATA-CTAGTAATTAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACTTCAC-------GTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTAGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTTA-TAGACAGCAGAGAAGGAATTTCCAGATGGAGCAAGCA------ATGATCAAAAGAAGTAGA--ATATAACTCGCTCCGGCCCAGAATTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCATTG-ATTATC-AGTC-T-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCT-GG--AAATGCCTGATCAA--AACAGGAATT-TCTTGGGAAT-GACTGA-AC-ATTCAGG-CAT-TT--CCTGAGAATGAC-CA-GAATCCGGATTTGACTGTAA
gi|3 : CTTCAGAGTGATTTCT-ATTAC-------CATCT-GCATGTCTCAAATTAGT-T--A-AAATT-GATC-TTTGC-------TG-CAGTCCTTAATTCGGCTAAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGACGCTTTTAGAAGAA---TTTTTGAAAACTTTGAAGAAAAA---------A----------AACCACGCCACAGATCGACGCCATTAATC-----TTT---TA-T------------GTCAATGAAACTTCTGACATGACTAACCTACTTGTTGGCCAAGCCACAGACCTCACTTCTAACGTCGACCAAATTGATGATATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAAATCCAAGTAAA----CAGTAGACAGCAGAGTAGGAAATTCCAGATGGAGCAAGCAGAGAGAGTGGTCAATAGAAGTAGA--ATAGAACTCGCTCCGGTGCAGAAGTGGAGGTCAAAATGATA-ATCA-GC-AA-CCTGGAAATCTGAGGCTTTG-ATTTTT-AGT---------CAAGAA-TGCCTGGAA-CATTTA-G-C-TTTCTT-GG--AAATGCCCGATCTA--AACAGGAATG-TCTTGGGAAT-GACTGA-AC-TTTCAGG-CAT-TT--GCTGAGAATGAC-TA-GATTCCGGATTT
gi|4 : ACTGGGGGTCCGAATGACA-ATAATGAAAG-TCTTTAAATCTACGGCTTTC-ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGCTTAGG-C-TTTCCT-GG--AAATGACTGATCAA--AACAGAAATT-TCATTGGAAT-GACTGA-AC-TTTCAGG-CATGTTTGCATTAGAACTAC-TA-CATTCCAGATTTGACTGTAA
gi|4 : CTTCAGGGTGATTTCT-ATTAC-------AATCTT-CATGTCTGAAAGTAGT-T--A-AAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-GAAAATTCCTGTGAAGAAACTTTTTGAAGAAAA--TTTTGAA---TTTTAG-AATAA---------A----------ctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|5 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgttttgatcagtcatttccaggaaagcctaagcgttataggtatacttagagaatgactgaaaatgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagGGACTGGTGGTCAAAATGATATATCAGGCAGA-TCTGGAAATATGAGGCTTTTCATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATT-TCT-GGGAAT-GACTGA-A
gi|5 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GATT-----------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------A--CAAACTACattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaaACTGGGGGTCCGA-TGACA-ATAATGAAAAGTCTTTAAATCTACGGC-----ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGTT-AGG-C-TTTCCT-G---AAATGACTGATCAA--A-CAGAAATT-TCATTGGAAT-GACTGA-AC-TTTCAGG-CATGTTTGCATTAGAACTAC-TACAATTCCAGATTTGACTGTAActcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : CTTCAGGGTGATT-CT-AT-AC-------AATCTT-CATGTCTGAAAGTAGT-TT-A-AAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-G-AAATTCCTGTGAAG-AACTTTT-GAAGAAA---TTTTGAA---TTTTAG-AATAA---------A----------ctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagcttcagggtgattctatacaatcttcatgtctgaaagtagtttaaaattagatctctcccgcagttaagcttgaatatggctgaaattcctgtgaagaacttttgaagaaattttgaattttagaataaa
gi|7 : ttacagtcaaatctggaattgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgtttgatcagtcatttcaggaaagcctaacgttataggtatacttagagaatgactgaaaatgccgtagatttaaagacttttcattattgtcatcggacccccagtctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagGGACTGGTGGTCAAAATGATA-ATACGGCAGA-TCTGGAAATATGAGGCTC---ATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATT-TCT-GGGAAT-GACTGA-A
gi|7 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GATT-----------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A-------------CAAACTACattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|8 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgagcctcatatttccagatctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaaCTCCGGCCCAGAAGTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGGAATCTGAGGCTCTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCTGGG--AAATGCCCGATCAA--AATAGGAATT-TCTTGGGAAT-AACTGA-AC--TTCAGG-CAT-TT--TCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAActcttactgaagatcaagtatca
gi|9 : gTTCAGAGTAAGTTCT-ATTATA------CATCT-GCATGTCTCCAATTAGTAC--A-AAATT-TATAATT-GC-------TG-CAGCC---------C--AAGCTTTGAACATGGCT-GAAAATGC-TGTGAAAGAAATTTCAGA----GATTTTTTGAAAAGTTTGAA-AAAAAAACCGTAACA----------ACCCAAACCACAGATCGACACCATTAATCTTTTGTGTCAATtatcactcactaaatgcatctgtggtgatttaaacccaatctccaaagtgaggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAGATAGAATTAGATTTTTGCTGCAGCCTTTTAGCT
Alignments
lowQualScore : 3333333 11 11 1 666666666666666666666666666666666 111 3333333333333333333333 22222 44444444444444444 33333333 1 11 11 11
lowQualScore : 5 7777777 55 0 1 4 00 8 7 222222222222222222222222222222222 1 4 8 1 1 0 4 444 7 4 6666666666666666666666 55555 77777777777777777 7 77777777 9999 3 1 2 0 2 33 1 3 1 4 33 3 3 3 3 3 3 3 3 55 0 55 4 3 3 55 8 11 4 4
lowQualScore : . ....... .. . . . .. . . ................................. . . . . . . . ... . . ...................... ..... ................. . ........ .... . . . . . .. . . . . .. . . . . . . . . .. . .. . . . .. . .. . .
lowQualScore : 0 5555555 99 5 1 4 66 9 8 999999999999999999999999999999999 9 4 9 1 0 7 8 999 3 4 5555555555555555555555 00000 88888888888888888 3 77777777 0000 3 0 5 8 5 88 0 6 6 0 22 6 6 6 6 6 6 6 6 00 5 00 6 3 3 55 0 00 0 0
consensus : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TC-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------ACCCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
Reference ( family-10125 ) : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TC-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------ACCCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|1 : CTTCAGAGTGATTTCG-ATTAC-------CATCT-GCATGGCTCAAATTAGT-T--A-AAATT-GATC-TTTGC-------TG-TAGCC---------A--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAATCTTTAGAAGAA---TGTTTGAAAAGTTAGAA-AAAAA---------ACCCAAAACAAACCCAAGCCACAAATCGACACCATTAATC-----TGTCAATAA-TAATTAG--GCCTAGTCAATGAAACTTCTGACATGGCTAACTTACTTGTTGGCCAAGACACCGACCTCACCTCTCA-TGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAATGTGGCACGTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGATAGCAGAGAAGGAAATTACAGATAGAGCAAGCAGAGAGAATGGTGAAAA-AAGTTGA--ATAGAACTCACTCCGGCCCAGAAGTGGAAGTCAAAATTACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTCT------------CAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGA-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGG-ACTTTCA--GGCAT-TT--CTTGAGAATGAT-TA-GATTCCGGATTTGACTGTAA
gi|10 : gGGGGGTCAAAATGACA-ATCAAACAAA-CCTGGAAATCTGAGGCTTTG-ATTTTCAAGTCATCT-CTCCAAGAA-TTGCTGAAA-CTTTTAGGCC-TTTCCT-GG--AAATG-CCGATCAAATAACAGGAATTTCTTGGAAATAGACTGA-AATTTCA--GGCAT-TT--TCTGAGAATGACTTA-GATTCCGGATTTGACTGTAAtatgtatatttcttgtccaattaatgagtctactacaaaaaaagcttt
gi|11 : GGTCAAAATGACA-ATCAGGCAAA-CCTGGAGATCTGAGGCTTTG-GTTTTC-AGTCAT-T-CTCCAAGAA-TGCCTTAAA-CTTTTAGG-C-TTTCCC-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAAa
gi|12 : tGGAAATCTGAGGCTTTCCATTTTC-AGTCAT-TTCTCCACAAACTGCCTGAAATCTTTTAGG-CATTTCCT-GGGAAAATGTCCAGTCAA--AACAGGATTCTCTTGGGAAT-GACTGACACTGTTAAGGGCTT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|13 : acatgAGTAGT-T--A-GAATTAGATCGTT-GCTGCAGCCTGTCAGCT------------AAGCTT-AAGCATGGCT-GAAAATGCCTGTGAAATAACTTTT---TGAAGACTTTCTGAAAAGTTTGAA-AAAAA---------
gi|14 : GACAGCGGGGTAGGAAATTCCAGGTAAAGGAAGCAGAGGGAATGGTCAAAAGAATTAGAATATAGAACTAGCTCTAGCCCAGAAATGGAGGTCAAAATGACA-ATCAcgacgttttaccaaatgccaagtatcaggaaatt
gi|15 : GAAT-GACTGA-GCTTTCA--GGCAT-TT--CCTGAGGATGAC-TA-GATTACGGATTTGACTGTA
gi|2 : CTTCAGAGTGATTTCTTATTAC-------CATCTTGCATGTCTCAAATTAGT-TTTA-AAATTTGATC-TT-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACGTTTAGAAGAAGAATTTTTGAA--GTTAGAA-GATAA---------A----------ACCCAAGCCACAGATCGACGCTATTAATC-----TGTCAATAA-TA-CTAGTAAT-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACTTCAC--------GTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTAGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTTA-TAGACAGCAGAGAAGGAATTTCCAGATGGAGCAAGCA------ATGATCAAAAGAAGTAGA--ATATAACTCGCTCCGGCCCAGAATTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCATTG-ATTATC-AGTC-T-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCT-GG--AAATGCCTGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACATTCA--GGCAT-TT--CCTGAGAATGAC-CA-GAATCCGGATTTGACTGTAA
gi|3 : CTTCAGAGTGATTTCT-ATTAC-------CATCT-GCATGTCTCAAATTAGT-T--A-AAATT-GATC-TTTGC-------TG-CAGTCCTTAATTCGGCTAAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGACGCTTTTAGAAGAA---TTTTTGAAAACTTTGAAGAAAAA---------A----------AACCACGCCACAGATCGACGCCATTAATC-----TTTTA-----------------T-GTCAATGAAACTTCTGACATGACTAACCTACTTGTTGGCCAAGCCACAGACCTCACTTCT-AACGTCGACCAAATTGATGATATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAAATCCAAGTAAAC----AGTAGACAGCAGAGTAGGAAATTCCAGATGGAGCAAGCAGAGAGAGTGGTCAATAGAAGTAGA--ATAGAACTCGCTCCGGTGCAGAAGTGGAGGTCAAAATGATA-ATCA-GC-AA-CCTGGAAATCTGAGGCTTTG-ATTTTT-AGT---------CAAGAA-TGCCTGGAA-CATTTA-G-C-TTTCTT-GG--AAATGCCCGATCTA--AACAGGAATGTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--GCTGAGAATGAC-TA-GATTCCGGATTT
gi|4 : ACTGGGGGTCCGAATGACA-ATAATGAAAG-TCTTTAAATCTACGGCTTTC-ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGCTTAGG-C-TTTCCT-GG--AAATGACTGATCAA--AACAGAAATTTCATTGGAAT-GACTGA-ACTTTCA--GGCATGTTTGCATTAGAACTAC-TA-CATTCCAGATTTGACTGTAA
gi|4 : CTTCAGGGTGATTTCT-ATTAC-------AATCTT-CATGTCTGAAAGTAGT-T--A-AAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-GAAAATTCCTGTGAAGAAACTTTTTGAAGAAAA--TTTTGAA---TTTTAG-AATAA---------A----------ctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|5 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgttttgatcagtcatttccaggaaagcctaagcgttataggtatacttagagaatgactgaaaatgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagGGACTGGTGGTCAAAATGATATATCAGGCAGA-TCTGGAAATATGAGGCTTTTCATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATTTC-TGGGAAT-GACTGA-A
gi|5 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GATT-----------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------A--CAAACTACattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaaACTGGGGGTCCGA-TGACA-ATAATGAAAAGTCTTTAAATCTACGGC-----ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGTT-AGG-C-TTTCCT-G---AAATGACTGATCAA--A-CAGAAATTTCATTGGAAT-GACTGA-ACTTTCA--GGCATGTTTGCATTAGAACTAC-TACAATTCCAGATTTGACTGTAActcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : CTTCAGGGTGATT-CT-AT-AC-------AATCTT-CATGTCTGAAAGTAGT-TT-A-AAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-G-AAATTCCTGTGAAG-AACTTTT-GAAGAAA---TTTTGAA---TTTTAG-AATAA---------A----------ctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagcttcagggtgattctatacaatcttcatgtctgaaagtagtttaaaattagatctctcccgcagttaagcttgaatatggctgaaattcctgtgaagaacttttgaagaaattttgaattttagaataaa
gi|7 : ttacagtcaaatctggaattgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgtttgatcagtcatttcaggaaagcctaacgttataggtatacttagagaatgactgaaaatgccgtagatttaaagacttttcattattgtcatcggacccccagtctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagGGACTGGTGGTCAAAATGATA-ATACGGCAGA-TCTGGAAATATGAGGCTC---ATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATTTC-TGGGAAT-GACTGA-A
gi|7 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GATT-----------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A-------------CAAACTACattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|8 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgagcctcatatttccagatctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaaCTCCGGCCCAGAAGTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGGAATCTGAGGCTCTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCTGGG--AAATGCCCGATCAA--AATAGGAATTTCTTGGGAAT-AACTGA-AC-TTCA--GGCAT-TT--TCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAActcttactgaagatcaagtatca
gi|9 : gTTCAGAGTAAGTTCT-ATTATA------CATCT-GCATGTCTCCAATTAGTAC--A-AAATT-TATAATT-GC-------TG-CAGCC---------C--AAGCTTTGAACATGGCT-GAAAATGC-TGTGAAAGAAATTTCAGA----GATTTTTTGAAAAGTTTGAA-AAAAAAACCGTAACA----------ACCCAAACCACAGATCGACACCATTAATCTTTTGTGTCAATCATTA-CTtatcactcactaaatgcatctgtggtgatttaaacccaatctccaaagtgaggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAGATAGAATTAGATTTTTGCTGCAGCCTTTTAGCT
Alignments
lowQualScore : 3333333 11 11 1 666666666666666666666666666666666 111 3333333333333333333333 22222 44444444444444444 33333333 1 11 11 11
lowQualScore : 5 7777777 55 0 1 4 00 8 7 222222222222222222222222222222222 1 4 8 1 1 0 4 444 7 4 6666666666666666666666 55555 77777777777777777 7 77777777 9999 3 1 2 0 2 33 1 3 1 4 33 3 3 3 3 3 3 3 3 55 0 55 4 3 3 55 8 11 4 4
lowQualScore : . ....... .. . . . .. . . ................................. . . . . . . . ... . . ...................... ..... ................. . ........ .... . . . . . .. . . . . .. . . . . . . . . .. . .. . . . .. . .. . .
lowQualScore : 0 5555555 99 5 1 4 66 9 8 999999999999999999999999999999999 9 4 9 1 0 7 8 999 3 4 5555555555555555555555 00000 88888888888888888 3 77777777 0000 3 0 5 8 5 88 0 6 6 0 22 6 6 6 6 6 6 6 6 00 5 00 6 3 3 55 0 00 0 0
consensus : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TC-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------ACCCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
Reference ( family-10125 ) : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TC-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------ACCCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|1 : CTTCAGAGTGATTTCG-ATTAC-------CATCT-GCATGGCTCAAATTAGT-T--A-AAATT-GATC-TTTGC-------TG-TAGCC---------A--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAATCTTTAGAAGAA---TGTTTGAAAAGTTAGAA-AAAAA---------ACCCAAAACAAACCCAAGCCACAAATCGACACCATTAATC-----TGTCAATAA-TAATTAG--GCCTAGTCAATGAAACTTCTGACATGGCTAACTTACTTGTTGGCCAAGACACCGACCTCACCTCTCA-TGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAATGTGGCACGTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGATAGCAGAGAAGGAAATTACAGATAGAGCAAGCAGAGAGAATGGTGAAAA-AAGTTGA--ATAGAACTCACTCCGGCCCAGAAGTGGAAGTCAAAATTACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTCT------------CAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGA-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGG-ACTTTCA--GGCAT-TT--CTTGAGAATGAT-TA-GATTCCGGATTTGACTGTAA
gi|10 : gGGGGGTCAAAATGACA-ATCAAACAAA-CCTGGAAATCTGAGGCTTTG-ATTTTCAAGTCATCT-CTCCAAGAA-TTGCTGAAA-CTTTTAGGCC-TTTCCT-GG--AAATG-CCGATCAAATAACAGGAATTTCTTGGAAATAGACTGA-AATTTCA--GGCAT-TT--TCTGAGAATGACTTA-GATTCCGGATTTGACTGTAAtatgtatatttcttgtccaattaatgagtctactacaaaaaaagcttt
gi|11 : GGTCAAAATGACA-ATCAGGCAAA-CCTGGAGATCTGAGGCTTTG-GTTTTC-AGTCAT-T-CTCCAAGAA-TGCCTTAAA-CTTTTAGG-C-TTTCCC-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAAa
gi|12 : tGGAAATCTGAGGCTTTCCATTTTC-AGTCAT-TTCTCCACAAACTGCCTGAAATCTTTTAGG-CATTTCCT-GGGAAAATGTCCAGTCAA--AACAGGATTCTCTTGGGAAT-GACTGACACTGTTAAGGGCTT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|13 : acatgAGTAGT-T--A-GAATTAGATCGTT-GCTGCAGCCTGTCAGCT------------AAGCTT-AAGCATGGCT-GAAAATGCCTGTGAAATAACTTTT---TGAAGACTTTCTGAAAAGTTTGAA-AAAAA---------
gi|14 : GACAGCGGGGTAGGAAATTCCAGGTAAAGGAAGCAGAGGGAATGGTCAAAAGAATTAGAATATAGAACTAGCTCTAGCCCAGAAATGGAGGTCAAAATGACA-ATCAcgacgttttaccaaatgccaagtatcaggaaatt
gi|15 : GAAT-GACTGA-GCTTTCA--GGCAT-TT--CCTGAGGATGAC-TA-GATTACGGATTTGACTGTA
gi|2 : CTTCAGAGTGATTTCTTATTAC-------CATCTTGCATGTCTCAAATTAGT-TTTA-AAATTTGATC-TT-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACGTTTAGAAGAAGAATTTTTGAA--GTTAGAA-GATAA---------A----------ACCCAAGCCACAGATCGACGCTATTAATC-----TGTCAATAA-TA-CTAGTAAT-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACTTCAC--------GTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTAGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTTA-TAGACAGCAGAGAAGGAATTTCCAGATGGAGCAAGCA------ATGATCAAAAGAAGTAGA--ATATAACTCGCTCCGGCCCAGAATTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCATTG-ATTATC-AGTC-T-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCT-GG--AAATGCCTGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACATTCA--GGCAT-TT--CCTGAGAATGAC-CA-GAATCCGGATTTGACTGTAA
gi|3 : CTTCAGAGTGATTTCT-ATTAC-------CATCT-GCATGTCTCAAATTAGT-T--A-AAATT-GATC-TTTGC-------TG-CAGTCCTTAATTCGGCTAAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGACGCTTTTAGAAGAA---TTTTTGAAAACTTTGAAGAAAAA---------A----------AACCACGCCACAGATCGACGCCATTAATC-----TTTTA-----------------T-GTCAATGAAACTTCTGACATGACTAACCTACTTGTTGGCCAAGCCACAGACCTCACTTCT-AACGTCGACCAAATTGATGATATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAAATCCAAGTAAAC----AGTAGACAGCAGAGTAGGAAATTCCAGATGGAGCAAGCAGAGAGAGTGGTCAATAGAAGTAGA--ATAGAACTCGCTCCGGTGCAGAAGTGGAGGTCAAAATGATA-ATCA-GC-AA-CCTGGAAATCTGAGGCTTTG-ATTTTT-AGT---------CAAGAA-TGCCTGGAA-CATTTA-G-C-TTTCTT-GG--AAATGCCCGATCTA--AACAGGAATGTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--GCTGAGAATGAC-TA-GATTCCGGATTT
gi|4 : ACTGGGGGTCCGAATGACA-ATAATGAAAG-TCTTTAAATCTACGGCTTTC-ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGCTTAGG-C-TTTCCT-GG--AAATGACTGATCAA--AACAGAAATTTCATTGGAAT-GACTGA-ACTTTCA--GGCATGTTTGCATTAGAACTAC-TA-CATTCCAGATTTGACTGTAA
gi|4 : CTTCAGGGTGATTTCT-ATTAC-------AATCTT-CATGTCTGAAAGTAGT-T--A-AAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-GAAAATTCCTGTGAAGAAACTTTTTGAAGAAAA--TTTTGAA---TTTTAG-AATAA---------A----------ctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|5 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgttttgatcagtcatttccaggaaagcctaagcgttataggtatacttagagaatgactgaaaatgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagGGACTGGTGGTCAAAATGATATATCAGGCAGA-TCTGGAAATATGAGGCTTTTCATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATTTC-TGGGAAT-GACTGA-A
gi|5 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GATT-----------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------A--CAAACTACattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaaACTGGGGGTCCGA-TGACA-ATAATGAAAAGTCTTTAAATCTACGGC-----ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGTT-AGG-C-TTTCCT-G---AAATGACTGATCAA--A-CAGAAATTTCATTGGAAT-GACTGA-ACTTTCA--GGCATGTTTGCATTAGAACTAC-TACAATTCCAGATTTGACTGTAActcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : CTTCAGGGTGATT-CT-AT-AC-------AATCTT-CATGTCTGAAAGTAGT-TT-A-AAATTAGATC-TC-TC-----CC-G-CAGTT------------AAGCTT-GAATATGGCT-G-AAATTCCTGTGAAG-AACTTTT-GAAGAAA---TTTTGAA---TTTTAG-AATAA---------A----------ctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagcttcagggtgattctatacaatcttcatgtctgaaagtagtttaaaattagatctctcccgcagttaagcttgaatatggctgaaattcctgtgaagaacttttgaagaaattttgaattttagaataaa
gi|7 : ttacagtcaaatctggaattgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgtttgatcagtcatttcaggaaagcctaacgttataggtatacttagagaatgactgaaaatgccgtagatttaaagacttttcattattgtcatcggacccccagtctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagGGACTGGTGGTCAAAATGATA-ATACGGCAGA-TCTGGAAATATGAGGCTC---ATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATTTC-TGGGAAT-GACTGA-A
gi|7 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GATT-----------------AGCT---------G--A-GCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A-------------CAAACTACattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|8 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgagcctcatatttccagatctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaaCTCCGGCCCAGAAGTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGGAATCTGAGGCTCTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCTGGG--AAATGCCCGATCAA--AATAGGAATTTCTTGGGAAT-AACTGA-AC-TTCA--GGCAT-TT--TCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAActcttactgaagatcaagtatca
gi|9 : gTTCAGAGTAAGTTCT-ATTATA------CATCT-GCATGTCTCCAATTAGTAC--A-AAATT-TATAATT-GC-------TG-CAGCC---------C--AAGCTTTGAACATGGCT-GAAAATGC-TGTGAAAGAAATTTCAGA----GATTTTTTGAAAAGTTTGAA-AAAAAAACCGTAACA----------ACCCAAACCACAGATCGACACCATTAATCTTTTGTGTCAATCATTA-CTtatcactcactaaatgcatctgtggtgatttaaacccaatctccaaagtgaggt
blockSeqs : T GATTGAT TG G A TT G A TTTGCTGCAGTCCTTAATTCGGCT A T T G T A GAC A G AACCGTAACAAC TTTTG ATAATACTAGTAAT A TTCTAAC TTTT G T G G AT A T A G CC A C T C T C A G GA AT T A C AG G TG T C
blockSeqs : . GATTGAT TA T . T G T GTTGCTGCAGCCTGTCAGCT A . T G A A GAA A . AAC . . . . . . A G G . T . G . TC . . . . . . . . . . T . . . G TG . .
blockSeqs : . A TA T . . . A TTGCCCTGCAGCCG A . . G A T GAC A . AAA . T . G . G . G . G . . . . . . . . . . T . . . . . . .
blockSeqs : . . G G . . . A ATTGCTGCAGCCC A . . T A A GAC A . AA C . T . G . . . . . . . . . . T . . . . . . .
blockSeqs : . . T G . . . . TCTCCCGCAGTT A . . T A A GAT A . A C . G . G . . . . . . . . . . T . . . . . . .
blockSeqs : . . T G . . . . TCTCCCGCAGTT A . . T A A AA . . C . T . G . . . . . . . . . . A . . . . . . .
blockSeqs : . . G G . . . . AGCTG . . . T G . A . . C . G . C . . . . . . . . . . A . . . . . . .
blockSeqs : T . . . . AGCTG . . . G . . . . . G . G . G . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : NTTGCCGCAGTCT******************** GAC AA******************** G*
originalCons : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATC-TC-GC-----CCTG-CAGCC---------G--AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAA---------A----------ACCCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
finalCons : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATCNTTGCCGCAGTCT--------------------AAGCTT-GAACATGGCT-GAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA-AAAAAAA--------------------CCAAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAGATAGAATTAGATTTTTGCTGCAGCCTTTTAGCT
Alignments
lowQualScore : 3333333 11 11 1 111111111 444444444444444444444 111 5555555555555555555555 22222 44444444444444444 33333333 1 11 11 11
lowQualScore : 5 7777777 55 0 1 4 00 8 7 333333333 333333333333333333333 4 8 1 1 0 4 444 7 66 4 6666666666666666666666 6 55555 77777777777777777 7 77777777 9999 3 1 2 0 2 33 1 3 1 4 33 3 3 3 3 3 3 3 3 55 0 55 4 3 3 55 8 11 4 4
lowQualScore : . ....... .. . . . .. . . ......... ..................... . . . . . . ... . .. . ...................... . ..... ................. . ........ .... . . . . . .. . . . . .. . . . . . . . . .. . .. . . . .. . .. . .
lowQualScore : 0 5555555 99 5 1 4 66 9 8 888888888 444444444444444444444 4 9 1 0 7 8 999 3 11 4 7777777777777777777777 7 00000 88888888888888888 3 77777777 0000 3 0 5 8 5 88 0 6 6 0 22 6 6 6 6 6 6 6 6 00 5 00 6 3 3 55 0 00 0 0
consensus : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATCTTTGCC--GCAGCC-----------T-------AAGCTT-GAACATGGC-TGAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA--AA-AAAA----------A----------CC-AAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
Reference ( family-10125 ) : CTTCAGAGTGATTTCT-ATTAC-------CATCTTGCATGTCTCAAAGTAGT-T--A-AAATT-GATCNTTGCC--GCAGTC-----------T-------AAGCTT-GAACATGGC-TGAAAATGCCTGTGAAGAAACTTTTAGAAGAAGACTTTTTGAAAAGTTTGAA--AA-AAAA----------A----------CC-AAGCCACAGATCGACGCCATTAATC-----TGTCAATAA-TA-CTAG--GC-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACCTCACCTCT-A-CGTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGACAGCAGAGNAGGAAATTCCAGATGGAGCAAGCAGAGAGAATGGTCAAAAGAAGTAGA--ATAGAACTCGCTCCGGCCCAGAANTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTTTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|1 : CTTCAGAGTGATTTCG-ATTAC-------CATCT-GCATGGCTCAAATTAGT-T--A-AAATT-GATCTTTGCT--GTAGCC-----------A-------AAGCTT-GAACATGGC-TGAAAATGCCTGTGAAGAAATCTTTAGAAGAA---TGTTTGAAAAGTTAGAA--AA-AAAACCCAAAACAAA----------CCCAAGCCACAAATCGACACCATTAATC-----TGTCAATAA-TAATTAG--GCCTAGTCAATGAAACTTCTGACATGGCTAACTTACTTGTTGGCCAAGACACCGACCTCACCTCTCA-TGTCGACCAAGTTGATGACATTGGCTTTGTTGAAAATGTGGCACGTCTTGATGCTAGACAGATCCAAATAAACTTTCA-TAGATAGCAGAGAAGGAAATTACAGATAGAGCAAGCAGAGAGAATGGTGAAAA-AAGTTGA--ATAGAACTCACTCCGGCCCAGAAGTGGAAGTCAAAATTACA-ATCAGGCAAA-CCTGGAAATCTGAGGCTCT------------CAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGA-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGG-ACTTTCA--GGCAT-TT--CTTGAGAATGAT-TA-GATTCCGGATTTGACTGTAA
gi|10 : gGGGGGTCAAAATGACA-ATCAAACAAA-CCTGGAAATCTGAGGCTTTG-ATTTTCAAGTCATCT-CTCCAAGAA-TTGCTGAAA-CTTTTAGGCC-TTTCCT-GG--AAATG-CCGATCAAATAACAGGAATTTCTTGGAAATAGACTGA-AATTTCA--GGCAT-TT--TCTGAGAATGACTTA-GATTCCGGATTTGACTGTAAtatgtatatttcttgtccaattaatgagtctactacaaaaaaagcttt
gi|11 : GGTCAAAATGACA-ATCAGGCAAA-CCTGGAGATCTGAGGCTTTG-GTTTTC-AGTCAT-T-CTCCAAGAA-TGCCTTAAA-CTTTTAGG-C-TTTCCC-GG--AAATGCCCGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAAa
gi|12 : tGGAAATCTGAGGCTTTCCATTTTC-AGTCAT-TTCTCCACAAACTGCCTGAAATCTTTTAGG-CATTTCCT-GGGAAAATGTCCAGTCAA--AACAGGATTCTCTTGGGAAT-GACTGACACTGTTAAGGGCTT-TT--CCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAA
gi|13 : acatgAGTAGT-T--A-GAATTAGATCGTTGCT--GCAGCC-----------TGTCAGCTAAGCTT-AAGCATGGC-TGAAAATGCCTGTGAAATAACTTTT---TGAAGACTTTCTGAAAAGTTTGAA--AA-AAA
gi|14 : GACAGCGGGGTAGGAAATTCCAGGTAAAGGAAGCAGAGGGAATGGTCAAAAGAATTAGAATATAGAACTAGCTCTAGCCCAGAAATGGAGGTCAAAATGACA-ATCAcgacgttttaccaaatgccaagtatcaggaaatt
gi|15 : GAAT-GACTGA-GCTTTCA--GGCAT-TT--CCTGAGGATGAC-TA-GATTACGGATTTGACTGTA
gi|2 : CTTCAGAGTGATTTCTTATTAC-------CATCTTGCATGTCTCAAATTAGT-TTTA-AAATTTGATC-TTGCCCTGCAGCC-----------G-------AAGCTT-GAACATGGC-TGAAAATGCCTGTGAAGAAACGTTTAGAAGAAGAATTTTTGAA--GTTAGAA--GATAAAA----------C----------CC-AAGCCACAGATCGACGCTATTAATC-----TGTCAATAA-TA-CTAGTAAT-TAGTCAATGAAACTTCTGACATGGCTAACCTACTTGTTGGCCAAGCCACCGACTTCAC--------GTCGACCAAGTTGATGACATTGACTTTGTTGAAAACGTAGCACTTCTTGATGCTAGACAGATCCAAATAAACTTTTA-TAGACAGCAGAGAAGGAATTTCCAGATGGAGCAAGCA------ATGATCAAAAGAAGTAGA--ATATAACTCGCTCCGGCCCAGAATTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGAAATCTGAGGCATTG-ATTATC-AGTC-T-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCT-GG--AAATGCCTGATCAA--AACAGGAATTTCTTGGGAAT-GACTGA-ACATTCA--GGCAT-TT--CCTGAGAATGAC-CA-GAATCCGGATTTGACTGTAA
gi|3 : CTTCAGAGTGATTTCT-ATTAC-------CATCT-GCATGTCTCAAATTAGT-T--A-AAATT-GATCTTTGCT--GCAGTCCTTAATTCGGCT-------AAGCTT-GAACATGGC-TGAAAATGCCTGTGAAGACGCTTTTAGAAGAA---TTTTTGAAAACTTTGAAGAAA-AAAA----------A----------CC-ACGCCACAGATCGACGCCATTAATC-----TTTTA-----------------T-GTCAATGAAACTTCTGACATGACTAACCTACTTGTTGGCCAAGCCACAGACCTCACTTCT-AACGTCGACCAAATTGATGATATTGACTTTGTTGAAAACGTGGCACTTCTTGATGCTAGACAAATCCAAGTAAAC----AGTAGACAGCAGAGTAGGAAATTCCAGATGGAGCAAGCAGAGAGAGTGGTCAATAGAAGTAGA--ATAGAACTCGCTCCGGTGCAGAAGTGGAGGTCAAAATGATA-ATCA-GC-AA-CCTGGAAATCTGAGGCTTTG-ATTTTT-AGT---------CAAGAA-TGCCTGGAA-CATTTA-G-C-TTTCTT-GG--AAATGCCCGATCTA--AACAGGAATGTCTTGGGAAT-GACTGA-ACTTTCA--GGCAT-TT--GCTGAGAATGAC-TA-GATTCCGGATTT
gi|4 : ACTGGGGGTCCGAATGACA-ATAATGAAAG-TCTTTAAATCTACGGCTTTC-ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGCTTAGG-C-TTTCCT-GG--AAATGACTGATCAA--AACAGAAATTTCATTGGAAT-GACTGA-ACTTTCA--GGCATGTTTGCATTAGAACTAC-TA-CATTCCAGATTTGACTGTAA
gi|4 : CTTCAGGGTGATTTCT-ATTAC-------AATCTT-CATGTCTGAAAGTAGT-T--A-AAATTAGATCTCTCCC--GCAGT------------T-------AAGCTT-GAATATGGC-TGAAAATTCCTGTGAAGAAACTTTTTGAAGAAAA--TTTTGAA---TTTTAG--AA-TAAA----------ctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagcttcagggtgatttctattacaatcttcatgtctgaaagtagttaaaattagatctctcccgcagttaagcttgaatatggctgaaaattcctgtgaagaaactttttgaagaaaattttgaattttagaataaa
gi|5 : ttacagtcaaatctggaatgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgttttgatcagtcatttccaggaaagcctaagcgttataggtatacttagagaatgactgaaaatgaaagccgtagatttaaagactttcattattgtcattcggacccccagtctaacatttaaatatcgctcacggaatacatctgtagtgatttgaactcatttccaaattgaggcgattaagGGACTGGTGGTCAAAATGATATATCAGGCAGA-TCTGGAAATATGAGGCTTTTCATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATTTC-TGGGAAT-GACTGA-A
gi|5 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GAT----------TAG-C-----------T-------GAGCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA--AA-AAAA----------A-----------C-AAACTACattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaaacaaactacctcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgaaaagcctcatatttccagatctgcctgatatatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtccaaattgaggcgattaaaACTGGGGGTCCGA-TGACA-ATAATGAAAAGTCTTTAAATCTACGGC-----ATTTTC-AGTCAT-T-CTCTAAGTA-TACCTATAA-CGTT-AGG-C-TTTCCT-G---AAATGACTGATCAA--A-CAGAAATTTCATTGGAAT-GACTGA-ACTTTCA--GGCATGTTTGCATTAGAACTAC-TACAATTCCAGATTTGACTGTAActcttactgaagatcaagtatcaggaacttttatgtacatga
gi|6 : CTTCAGGGTGATT-CT-AT-AC-------AATCTT-CATGTCTGAAAGTAGT-TT-A-AAATTAGATCTCTCCC--GCAGT------------T-------AAGCTT-GAATATGGC-TG-AAATTCCTGTGAAG-AACTTTT-GAAGAAA---TTTTGAA---TTTTAG--AA-TAAA----------ctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagcttcagggtgattctatacaatcttcatgtctgaaagtagtttaaaattagatctctcccgcagttaagcttgaatatggctgaaattcctgtgaagaacttttgaagaaattttgaattttagaataaa
gi|7 : ttacagtcaaatctggaattgtagtagttctaatgcaaacatgcctgaaagttcagtcattccaatgaaatttctgtttgatcagtcatttcaggaaagcctaacgttataggtatacttagagaatgactgaaaatgccgtagatttaaagacttttcattattgtcatcggacccccagtctaacatttaaatatcgctcacggaatacatcgtgtagtgatttgaactcattccaattgaggcgattaagGGACTGGTGGTCAAAATGATA-ATACGGCAGA-TCTGGAAATATGAGGCTC---ATTTTC-AGTCAT-T-CTCCAAAAA-TGCCTGACA-CTTTTAGG-C-TTTCCT-GG--AAATGCCCGATCAA--AACAGGCATTTC-TGGGAAT-GACTGA-A
gi|7 : cCTTCAGAGTGATTTCT-ATTACGATTGATCATTCTACATGATTCAAAGTAGT-T--AGAAAGA-GAT----------TAG-C-----------T-------GAGCTT-GAGCATGGCTTGACAATTCCTCTGAGGAAACGTTTAGAAGAAGACTTTTTGAAAAGTTTGAA--AA-AAAA----------------------C-AAACTACattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaacttcagagtgatttctattacgattgatcattctacatgattcaaagtagttagaaagagattagctgagcttgagcatggcttgacaattcctctgaggaaacgtttagaagaagactttttgaaaagtttgaaaaaaaacaaactacctcttactgaagatcaagtatca
gi|8 : cttcagtcattcccagaaatgcctgttttgatcgggcatttccaggaaagcctaaaagtgtcaggcatttttggagaatgactgaaaatgagcctcatatttccagatctgccgtattatcattttgaccaccagtccattcactggccgcatttgtggtgattaaactccgtctcaaattgaggcgattaaaCTCCGGCCCAGAAGTGGGGGTCAAAATGACA-ATCAGGCAAA-CCTGGGAATCTGAGGCTCTG-ATTTTC-AGTCAT-T-CTCCAAGAA-TGCCTGAAA-CTTTTAGG-T-TTTCCTGGG--AAATGCCCGATCAA--AATAGGAATTTCTTGGGAAT-AACTGA-AC-TTCA--GGCAT-TT--TCTGAGAATGAC-TA-GATTCCGGATTTGACTGTAActcttactgaagatcaagtatca
gi|9 : gTTCAGAGTAAGTTCT-ATTATA------CATCT-GCATGTCTCCAATTAGTAC--A-AAATT-TATAATTGCT--GCAGCC-----------C-------AAGCTTTGAACATGGC-TGAAAATGC-TGTGAAAGAAATTTCAGA----GATTTTTTGAAAAGTTTGAA--AA-AAAA----------ACCGTAACAACCC-AAACCACAGATCGACACCATTAATCTTTTGTGTCAATCATTA-CTtatcactcactaaatgcatctgtggtgatttaaacccaatctccaaagtgaggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTAGATAGAATTAGATTTTTGCTGCAGCCTTTTAGCT