lowQualScore : 333 4 3
lowQualScore : ... . .
lowQualScore : 333 4 7
consensus : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTNTA
Reference ( gi|7 ) : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTGTA
gi|19 : CGTGTCGCACCGACACATCTAG-T---TCAA-ATTG
gi|14 : CGTGTCGCACCGACACATCTAGTT---TCAATATT
gi|8 : CGTGTCGCACCGACACATCTAGTT---TT
gi|21 : tCGTGTCGCACCGACACATCTAGTT---Tgtgatac
gi|9 : CGTGTCGCACCGACACATCTAGTT---Tcggt
gi|18 : CGTGTCGCACCGACACATCTAGTT------A-ATTAggatatgat
gi|12 : tCGTGTTGCACCGACACATCTAG-T---TTAA-ATt
gi|6 : tCGTGTCGCACCGACACATCTACTT---TTAaca
gi|2 : CGTGTTGCACCGACACATCTAGTT---ATAC-ATTTTAttttaata
gi|17 : tCGTGTCGCACCGACACATTTAGTT---TTtt
gi|11 : tCGTGTCGCACCGACACATCTAGTT---tttat
gi|5 : tCGTGTCGCACCGACACATCTAGTT---attttata
gi|4 : tGTGTCGCACCGACACATCTAGTT---TTAactattattg
gi|10 : GTGTTGCACCGACACATCTAGTT---TTTA-ATTtactagtat
gi|20 : GTGTCGCACCGACACATCTAGTT---TCAcat
gi|15 : GTGTCGCACCGACACATCTAGTTGTATTAA-Agtt
gi|13 : GTGTCGCACCGACACATCTAGTT---a
gi|22 : TGTCGCACCGACACATCTAGTT---TTAA-atttctatac
gi|3 : tctTGTCGCACCGACACATCTAGTT---TTA
gi|1 : TGTCGCACCGACACATCTAGTT---TTAttttattttta
gi|16 : TGTCGCACCGACACATCTAGTT---TTTA-ATtttatcttttatgatgat
Alignments
lowQualScore : 333 444 1
lowQualScore : ... ... .
lowQualScore : 222 888 0
consensus : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
Reference ( family-1008 ) : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTNTA
gi|1 : TGTCGCACCGACACATCTAGTT---TTA
gi|10 : GTGTTGCACCGACACATCTAGTT---TTTA-ATTtttatcttttatgatgat
gi|11 : CGTGTCGCACCGACACATCTAGTT--------ATTTTAcat
gi|12 : tCGTGTTGCACCGACACATCTAG-T---TTAA-ATta
gi|13 : tGTGTCGCACCGACACATCTAGTT---aca
gi|14 : CGTGTCGCACCGACACATCTAGTT---TCAATATTatttctatac
gi|15 : GTGTCGCACCGACACATCTAGTTGTATTAA-A
gi|16 : TGTCGCACCGACACATCTAGTT---TTTA-ATa
gi|17 : CGTGTCGCACCGACACATTTAGTT---TTatca
gi|18 : tCGTGTCGCACCGACACATCTAGTT------A-ATTAtttat
gi|19 : tCGTGTCGCACCGACACATCTAG-T---TCAA-ATTt
gi|2 : CGTGTTGCACCGACACATCTAGTT---ATAC-ATTTTAg
gi|20 : tGTGTCGCACCGACACATCTAGTT---TCAtt
gi|21 : CGTGTCGCACCGACACATCTAGTT---Tgtt
gi|22 : TGTCGCACCGACACATCTAGTT---TTAA-cggt
gi|3 : tctTGTCGCACCGACACATCTAGTT---TT---ATTTTA
gi|4 : GTGTCGCACCGACACATCTAGTT---TTAttttta
gi|5 : CGTGTCGCACCGACACATCTAGTT---tactagtat
gi|6 : tCGTGTCGCACCGACACATCTACTT---TT---ATTTTAactattattg
gi|7 : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTGTAata
gi|8 : CGTGTCGCACCGACACATCTAGTT---TT
gi|9 : tCGTGTCGCACCGACACATCTAGTT---Tgtgatac
Alignments
lowQualScore : 333 777
lowQualScore : ... ...
lowQualScore : 222 666
consensus : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
Reference ( family-1008 ) : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
gi|1 : TGTCGCACCGACACATCTAGTT---TTA----TTTA
gi|10 : GTGTTGCACCGACACATCTAGTT---TTTA-ATTtcttttatgatgat
gi|11 : CGTGTCGCACCGACACATCTAGTT--------ATTTTAcat
gi|12 : tCGTGTTGCACCGACACATCTAG-T---TTAA-ATta
gi|13 : tGTGTCGCACCGACACATCTAGTT---aca
gi|14 : CGTGTCGCACCGACACATCTAGTT---TCAATATTatttctatac
gi|15 : GTGTCGCACCGACACATCTAGTTGTATTAA-
gi|16 : TGTCGCACCGACACATCTAGTT---TTTA-ATa
gi|17 : CGTGTCGCACCGACACATTTAGTT---TTatca
gi|18 : tCGTGTCGCACCGACACATCTAGTT------A-ATTtttat
gi|19 : tCGTGTCGCACCGACACATCTAG-T---TCAA-ATTatt
gi|2 : CGTGTTGCACCGACACATCTAGTT---ATAC-ATTTTAg
gi|20 : tGTGTCGCACCGACACATCTAGTT---TCAtt
gi|21 : CGTGTCGCACCGACACATCTAGTT---Tgtt
gi|22 : TGTCGCACCGACACATCTAGTT---TTAA-cggt
gi|3 : tctTGTCGCACCGACACATCTAGTT---TT---ATTTTA
gi|4 : GTGTCGCACCGACACATCTAGTT---TTAttttta
gi|5 : CGTGTCGCACCGACACATCTAGTT---tactagtat
gi|6 : tCGTGTCGCACCGACACATCTACTT---TT---ATTTTAactattattg
gi|7 : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTGTAata
gi|8 : CGTGTCGCACCGACACATCTAGTT---TT
gi|9 : tCGTGTCGCACCGACACATCTAGTT---Tgtgatac
blockSeqs : GTA AAT
blockSeqs : . TA
blockSeqs : . AA
blockSeqs : . AA
blockSeqs : . TA
blockSeqs : . AA
blockSeqs : . AC
blockSeqs : . AA
blockSeqs : . AA
blockSeqs : . A
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : AA*
originalCons : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
finalCons : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
Alignments
lowQualScore : 333 777
lowQualScore : ... ...
lowQualScore : 222 666
consensus : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
Reference ( family-1008 ) : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTTTA
gi|1 : TGTCGCACCGACACATCTAGTT---TTA----TTTA
gi|10 : GTGTTGCACCGACACATCTAGTT---TTTA-ATTtcttttatgatgat
gi|11 : CGTGTCGCACCGACACATCTAGTT--------ATTTTAcat
gi|12 : tCGTGTTGCACCGACACATCTAG-T---TTAA-ATta
gi|13 : tGTGTCGCACCGACACATCTAGTT---aca
gi|14 : CGTGTCGCACCGACACATCTAGTT---TCAATATTatttctatac
gi|15 : GTGTCGCACCGACACATCTAGTTGTATTAA-
gi|16 : TGTCGCACCGACACATCTAGTT---TTTA-ATa
gi|17 : CGTGTCGCACCGACACATTTAGTT---TTatca
gi|18 : tCGTGTCGCACCGACACATCTAGTT------A-ATTtttat
gi|19 : tCGTGTCGCACCGACACATCTAG-T---TCAA-ATTatt
gi|2 : CGTGTTGCACCGACACATCTAGTT---ATAC-ATTTTAg
gi|20 : tGTGTCGCACCGACACATCTAGTT---TCAtt
gi|21 : CGTGTCGCACCGACACATCTAGTT---Tgtt
gi|22 : TGTCGCACCGACACATCTAGTT---TTAA-cggt
gi|3 : tctTGTCGCACCGACACATCTAGTT---TT---ATTTTA
gi|4 : GTGTCGCACCGACACATCTAGTT---TTAttttta
gi|5 : CGTGTCGCACCGACACATCTAGTT---tactagtat
gi|6 : tCGTGTCGCACCGACACATCTACTT---TT---ATTTTAactattattg
gi|7 : CGTGTCGCACCGACACATCTAGTT---TTAA-ATTGTAata
gi|8 : CGTGTCGCACCGACACATCTAGTT---TT
gi|9 : tCGTGTCGCACCGACACATCTAGTT---Tgtgatac