lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111 22222222222222222222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 11 5555555 11 22222222 11111 11111111 555555555 22222222 4444444444444 2 3333 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22 3333333333333 666666666666666 11 1 222 1 99999999999 22 44 2 2 1 22 1 1 2 2 4444444444 3333333 2 2 44 33 33333333333333333333333333333333 2 333 2 222 1 1 1 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8888888 11 2 11 1 222 333 1 11 222 1 000000000000000000000000000000000000000000000000000000000000000000000000 22 11 8888 1 2 1 1
lowQualScore : 777 0 8 00 8888888 4 00 88888888 22222 4 2 4 1 4 88888888 555555555 4 4 4 77777777 2 3333333333333 0 8 5 5 2222 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 44 6 1 4 3 8888888888888 888888888888888 6 1 99 3 333 6 5 6 00000000000 11 6 66 6 0 6 2 6 3 7 22 0 2 3 0 0 3333333333 3 3 0000000 0 4 0 44 4 00 66666666666666666666666666666666 6 0 6 2 4 555 99 0 6 333 6 0 0 7 0 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555555 44 6 88 3 333 666 3 88 6 666 0 7 777777777777777777777777777777777777777777777777777777777777777777777777 6 11 44 5555 5 4 5 7
lowQualScore : ... . . .. ....... . .. ........ ..... . . . . . ........ ......... . . . ........ . ............. . . . . .... . .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .. . . . . ............. ............... . . .. . ... . . . ........... .. . .. . . . . . . . .. . . . . . .......... . . ....... . . . .. . .. ................................ . . . . . ... .. . . ... . . . . . . ............................................................................................................................ ....... .. . .. . ... ... . .. . ... . . ........................................................................ . .. .. .... . . . .
lowQualScore : 888 7 9 11 3333333 4 11 22222222 33333 4 4 4 7 4 00000000 666666666 4 4 4 00000000 1 1111111111111 9 0 7 7 4444 3 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 77 7 0 7 7 7777777777777 000000000000000 7 0 33 3 333 7 0 0 00000000000 00 0 00 0 0 0 5 7 3 3 33 7 0 3 0 5 5555555555 5 5 5555555 0 0 0 55 0 55 00000000000000000000000000000000 0 0 0 5 0 555 00 0 0 333 0 0 0 0 0 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333 77 7 33 3 333 777 3 33 7 000 7 0 000000000000000000000000000000000000000000000000000000000000000000000000 0 00 00 0000 0 7 0 0
consensus : ACTAATTGCAA---CAAAATG-TTTCTCAACGGGAAAAATGTA--TAC-CTTGGTAT-ATCATA---TTTAAA-ATT-C-CGAAAGTTTAGAAAA-ATTC-A-GA---AGGGGGAA--AA--GACTATA-AA-TATTC-A-----TC-AAAATTTAAT----AATTATTGACATTCGAA-AGTAT-GGCC-AG-CCGGCGCTCCA-TA-CAAG--TCTAT-ACA--AT-A-TAT-G---ACATCA-AGG-TTACG-CGA--CNATG-AAA--GNAAAAACCG-CAA-AAT-AACG-AT-GCA--TTACGCATGC--A-----------AATGAAA-TAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCC-TAA------A-TA-GCA--------TT-GC---C-----------T--NGA--CTCGA------CAC-A--TG-CTTTACGGNTA-----C---------AGC---A-ATAAAAAT-CGCCTTTA-TCGCCCACGA-ATGAT-AATATATCTATGTC--TGAA-ATA-C-GC--T--ATCTT---ATTCAC-GTAC-CCT---TAG--TAGTC--GT---------AATTGCACGCTTGCGNTGTAATNTACATNCA--CA-----CGATATATT-C-CATG---T----ACGGCGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATAATTCTCATTCATGAGTGGGCACCAGTGANGCAGCCTAAA-GTTATAAACTCAAAAAA-AATAGAAAGATCACCAACGCAT-TAAGAGAATAAACAA-TAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTNCAACTAATTATTTNGTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTNCCNTTNNACANTATGAAATTGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT-TCATATGAC-----AATG----C-TG-AC-TACGAT-AACTGAAACAA-CCGCATAAAAATAAATTGCT-GCTCTGTTCC-TTCC-T---CTT-TTATCCTAGCGAAG-TTTACTC--CAG-AGATGATGGCGTTTTGTATTAATT---ATTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTC-TGATA--TCAGCAAAGTGTTCCG-GAGAGTTGCTTGGG------GTTTTCTTGG-----G--N--G-GGTGGCTT-TTT---A-TTT---------AA-TTTTG------GATTCGCTCTGTTGA-CAA----CCACATGGTTTGAAAGTACATGT
Reference ( gi|1 ) : ACTAATTGCAA---CAAAATG-TTTCTCAACGGGAAAAATATAGTTAC-CTTGGTAT-GTCA-A---TTGAAA-ATT-C-CAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAGGGGTTATA-AA-TATTC-A-----TT-AAAATTTAAT---CAATTATTGACATTCAAAGAGTAT-GGCC-A--CTGGCGCTCCATTA-CAAGGTTCTAT-ACA--GT-GTTAT-GC--ACATCA-AGG-TTACG-CGA--CTATG-GAACTGAAAAAATCG-CAA-AAT-AACG-ATGGCA--TTACG-ATGC--AC----------AATGAAA-TAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCC-T-A------A-TA-GCA--------AT-GC---C-----------T--AGA--CTCG-------CAC-A--TG-CTCTACGGGTA-----C---------AGC---ATATAAGAAT-CACCTTTATTCATCCACGATCTGAT-AATATATCTATGTCAATGAATATA-CAGTAATA-ATCTTTA-ATTCAC-CTACGCCT-TTTA---TAACC--AT---------AATTAGACGCGTGTGTTGTAATCTACATGCA--CA-----CGATATATT---CATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCAC-----------AATTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AA-GTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGA-TAAACAAATAAATT-CATT-GAACTTGACCAGTTTCGACTGTTTGG--TCGT-CATC-AGTACAA-TAATATTTTTGTTCTATTGA-------T---C--------------AT----TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT-TCATATGACAAAAAAATAAGATTATGAAC-TATGATTAACTGAAACAAACCACATGAATATAAATTGCT-GCATTGTTCCTTTTTTTTTTTTTTTTATCCCAGCAAAAATTTATTTCACAA-AGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTC-TGATA--TCAGCAAAGTGTTCTGTGGGAGTTGCATGGG------G-------GG-----G--G--G-GG----------------TT---------AG-TTT--------GATTCACTCCTTTGG-CAATTTTCCAAATGGATTGAACGTTCATGT
gi|7 : ACTAATTGCAA---CAAGATG-TTTCTCAACGG--AAAATGTA----C-CTTGGTAT-ATCATA---TTTAAA-GTT-C-CAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A---GATTATA-AA-TATTG-A-----TTCAAAATTTACT----AATCA-TGACATTCAAA-AGTAT-GATC-AGGC-GGCGCTCCA-TA-CAAGAT--TAT-ATG--GC-ATTA-----------A-AAG-TTA---CGA--CGATGTAAAC--AAAAA--CG-CAA-AAT-AACG-AT-GCA--TTACGCATGC--A-----------AATGAAA-TAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCC-TAA------A-TA-GCA--------TT-GC---C-----------T--TGA--
gi|5 : cagtagaaatagaaacctttcgggaACTAATTGCAA---CAAAATG-TTTCTAAACGGCAA---TATA--TAC-CTTGATAT-ATCA-A---ATTTAA-ATTAC-CAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA----CTACA-AAGCATTC-A-----TTCAAAATT----------------ACATTCAAA-AGTAT-GGCCAA--CCGGCGCTCCA--AGCAAG--TTTA----A--AT-G---------ACAT---AGA-CT--G-CGA--TAATGTAAACAGCAA----CG-CAA-AAT-GACG-AT-GCA--TTACGCATGT--G-----------AATAAAA-AAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCC-TAA------A-TA-GCA--------TT-GC---C-----------T--TGAATCTCAAATTTCCCAC-A--TG-CTTTACGGGTA-----C---------ATTTTAAAATAA-AAT-TACATTTA
gi|8 : ccagtagaaatagaacattttcgcaaATTAATTGCAA---CAAAAGG-TTTCTCAGCGGGAAAA---TG--TAC-CTTGGTAT-ATCATA---TTTAAACA---C-CCAAAGTTTAGAAAA-ATCT-ATGA---AGGGGAAA--A-----CCATA-AA-TTTTC-A-----CC-AAAATATGAA---AAAT--TTGACATTCGAA-AGTAT-GACC-AG-CCGACGC-CCA-TA-C-----TCTAC-GTA--AT-A-TAT-G----CATC--CGG-TTACGACGAT-CTA----AA--GAAAAGACAGTCAATAATCAATGTATCG-A--TTATA-ATATAAAT----------AATGA----AA-ATT----TCAT-------GATA-CTTTAAAG-ATGTAAacctatattgtcaacgaatgattgata
gi|3 : ggccagtagaaatagaaaattatcggaACTAATTGCAA---CAAAAGGTTTTCTCAGCGG---AAATGTA------CTTGGTAT-ATCA-ATATTTTAAA---C-C-TAAAAG-TTAGAAAA-ATCT-ATGA---AGGGGAAA--GA-----CATC-AA-TTTTC-A-----CC-CAA---TAGA---AAAT--TTGACATTCGAA-AGTAT-GACC-AG-CCGACGC-CCA-TA-CA-----CTA----A--GT-A-TAT-ACTGACATC--CGG-TTACGACGAT-CTA--------GCAAGAATGG-ACA-AAC-AATC-AT-ACAAGTTATT-AT----------------AA--AAA-TAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAAC--CTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGC-ATTCCCCA-TA-GC---------AT-GC---CGCTTTGAGTCTC--AAA--TTCG-------CACTG--TGACTTTATAGTCA-----CTAATTAGTGAGT---ACAT-TGAAT-----TTTCATCGCCTATGAATGGTT-AATATATCCATTT---------TA-CAACAATC-ATCCATATATACAA-ATA--------TA---TAGTT--GT---------GATTTCACGCGTACGATGTAATAAACTTTCA--CATTGATCGGTACTTTGC-CA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAattacaaacctgtgtatctacagaaatgtaattg
gi|14 : ccagtaaaatagaaaattatcgggaACTAATTGCAA---CGAAATG-TTCCTTAAT-GTAACAATGTACCTTCAGTTGGTAT-GTCATA---TTT-AA-CTT-C-TGTAAGTTCAGAAAA-ATAC-A-TA---A--AGAAA--AAAAGATTGTA-GA-TATTC-AGGTTTTT-TAGATTTGATATCCAATTAT
gi|18 : agagaaaattattgggaACTAATTGCAA---CATAAGG-TTTCTCAGCGGG-AAAATG----TAC-CTTGga
gi|9 : gccagtagaattagaaaattatcgggaCTAATTGCAA---CAAAATG-TTTCTCAACGAGAAAATTG----TAC-CTTGGTATCATCATA---TT-AAA-ATT-C-CAAAAGTTTAGAAAACATCCAA-GA---A--GGGAA--A---GGTTATACAA-TATTC-AT----TT-AAAATTTAAT----AA-TATGAGCATTTCAAAAGTATGGGCC-AG-CCGGCG--CCATTA-C------CT----CA--A------------GCATCATAGGTTTAC--CGAAGC-ATG-GAA--GCAAAAAGCG-CAA-AAT-AACG-AT-GCA--TTTCGCATCC--A-----------AATGCAA-TAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACGAAA--GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAA
gi|13 : atagaaaattttcgggaagAATTGCAA---CAAAATGTTTTTTCAACGGGGAAAAAATG--CAC-CTTGATAT-TTCATA---ATCAAA-ATT-C-C-GAAGTGAAGAAAA-ATTC-A-GA---TAGGGGAA--A---GAATATA-AA-TATTCAA-----TC-AAAATTTAGT----AATT-CTGAAATTCAA--AGTAT-GGAC-A--
gi|15 : ccaatagatatagaaATTGCAATTACAAAACG-TTTGTTAATTGGAAAA-----GGTAC-CCTAACAT-ATCTTA---TTTAAA-CTT-C-CGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAA--GACTATA-AA-TATTA-AG----TC-AAAATATGAT---Cgtcg
gi|12 : ttgaagaattattgggaatat-A---TTGAAA-AAG-AACAAAACTTTAGAAAA-AATG-T-GA---A-GAGGAG--GAGGTACTATA-AA-TATCC-AC----TC-AAAGTGTACT---GTTTTAT--GTATTCGAAT-GTAA-GGCC-AG-CCGGCGCT-CA-TA-CAAGCTTATATGACACCATGGTCATGGC--A-ATCA-AAT-ATAAA-TAA--TAATA-AAA---AAACAACAA-CAA-AAC-AACA-GCAACA----AAG-ATGC--ATTAAATTTGAAAATGAAA-TAG-AGCACT-TCAT-------TGTt
gi|6 : atttatAAAATC---AA-AAT-AGAA-ATG-TA--TTT----TGC--A-------------TGAAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAAAAA--AAAGTGTGTTCC-TCCTAAC-GTCCAAA-TC---TTC-AGT--TATAGGCC-TAA------A-CA-GCA--------TT-GCATTT-----------T--AG-----CA--------AC-A--TG-TTT-------------C---------AGC-----ATAAAAAT---CCTCTA-TCACCCACAA-ATGAT---TTTGGCTATGCC-ATGAAAATATCTGT--TACATGTTGC-ATT-ACTTTATTCTTATTTAG--TAATCCAATGTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACA-GTT--CA-----CAATATATTTTCTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTGgttattaccaaacatacccagtttctaaaatgta
gi|2 : gtatagccagcaggcgctccttaagcttataggacatcgatatcactacAGTATGTAACGAAAA-GG-TGTA---TATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCC-T-A------AATA-GCATTGGCTAAATTGC---C-----------T--TGA--CTCGAT-----CAC-ACTTG-CTTTACATTT------C---------AGC---A---AAAAATTCGCCTAT-TTCACCCAAGA-ATGATTAATACATCTAGGTCA-TGAATAT-------------CTT---ATTCAT-GTACGCCT----AAATTAGCC--AT---------AATTGTACACTTGTACTGTAATCTACATACAAACA-----CGATTTATT---CATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAA-GTTAAAAACTTAAAAGA-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN-NNNC-AGTACAA-TAATTATTTAGTTC-ATTGA-------TGTACCGTAGATAAAAAAAAT----TTGGCT-GACATTTCCAT-TAACAGTATAAAAT-AC
gi|16 : AGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Ggaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|19 : tc-A------A-TAAGCA--------TT-GC---C-----------TCTAGA--CTCG-------CAT-A--TG-CTCTACGGGTACATTTC---------AGC---ATAAAAcataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|17 : AATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAA-GTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-
gi|4 : ttccaCCT-AAAGTTATAAACTCAAAAA-GAATAGAA-GATCACCAAGACATATAAGAGAATAAACAA-TAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTAAT--TTTTGTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACACAT
gi|4 : GAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTATCATAT--------AGTA---------------GAT-AACTGAAAC----C-CATAAAAATAAATTGCT-GCTCTGTTCCTTTTTAT---------ATCC-AGCAA-------TTTTACAATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTC--TGGGAGTTGCTTGGGTTTTTTG-------GGTTAGTG--T--G-GC----------------TTTTTTTTAAAAA-TTTTAATTTTGGATTCGCTCTGTTGA-CAA----CCACATGGTTTGAAAGTACATGTgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacagacagaaagaaattgcgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|11 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacagacagaaaTATTTCGAGCTTGC-ACTGCCTTC-GGATTT-TCATATGACTGAACAAT-----------C-CATAA-------AAATAAATTGC------------TGCT-GTTCTGTTCC----------CTTTTTATCCTAGC-GAAGTTTACTC------AGATGATGGCGTTTTGTATTAATT---ATTATG-TAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTC-TGATA--TCAGCAAAGTGTTCTGGGAGAGTTGCTTGGG------GTTTTCTTGG-----G--GTAGTGGTGGCTTTTTTAAAAATTT---------AA-TTT--------GATTCGCTCTGTTGA-CAA----CCACATGG-TTGAAAGTACATGT
gi|2 : atcattggaccT---AGCTAGC-ACTGCCTTC-GGATTA-TCATATGAC------ATG----CATGTACATACGATTAATTG-AACAATCCATAAAAATAT--ATTGCT-GC--TGTTCac
gi|10 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaC-ACTGCCTTCCGGATTT-TCATATGA-----------GACTCTGAAC-T-------------------C-CATAAAAATAAATTGCTGGCCTTGTTCTGTTCCTTCTTTTTATTA-CCTAGCGAAGTTTTACT---CAG-A-ATGATGGCGTTTTGTATT-----ATATTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTC-TGATGATTCAGCAAA-TGCTTCG-GAGAGTTGCTTGGG------GTTTTCTTGG-----GTTA--G-GGTGGCTTGTTTTTTATTTT---------AGATTTTG------GATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGTtagctgttcctat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 22222222 11111 111 1 111 11111 2222222 22222222222222 88888888888888888888888888888888888888888888888888888888888888888888 11111 1111 22222222222 222222222 1111 1111 1 111 111 11 111111 222222222 11 4444444 11 111 3333333333333333333333333333333333333333 555555555555555 00000000000000000000000000000000000000000000000000000000000000 1 11 22222 1 333333333333 1 111 44444444444 2 2 22 1 1 1 1 1 11 11 1 1 2 22 11 888888888888888888888888888888888 11 11 111 1111 111 1 11 4444444444444444444444444444444444444444444444444 4444444444444444 333333333333 111 11 1 4444444 111 1 1 11 1 111 333 1 11 11 1 11 88888888888888888888888888888 22 11 1 2222
lowQualScore : 777 4 4 7 33333333 00000 4 4 000 3 4 4 2 111 44444 5555 4 4 4 4444444 4 00000000000000 5 4 5 4 6 5 5 22222222222222222222222222222222222222222222222222222222222222222222 22222 4444 5 5 00000000000 5 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 8 2 0 5 5 222 222 88 99 666666 5 77 222222222 77 1 55 7777777 6 55 111 8888888888888888888888888888888888888888 4 8 8 8 888888888888888 77777777777777777777777777777777777777777777777777777777777777 2 00 3 1 1 0 1 33 55555 4 0 333333333333 2 6 99 0 777 2 3 33333333333 3 0 3 0 1 0 3 33 5 0 0 3 0 0 88 22 0 0 1 3 33 1 44 666666666666666666666666666666666 44 1 1 55 555 4444 4 3 444 3 6 55 6 6666666666666666666666666666666666666666666666666 1111111111111111 222222222222 111 3 7 66 0 0 2222222 2 8 9 777 5 5 33 0 777 222 0 33 2 22 0 7 11 0 44444444444444444444444444444 33 88 0 1111 9
lowQualScore : ... . . . ........ ..... . . ... . . . . ... ..... .... . . . ....... . .............. . . . . . . . .................................................................... ..... .... . . ........... . .. .. ... . . . . . ......... . .... . .... . . . . . ... ... .. .. ...... . .. ......... .. . .. ....... . .. ... ........................................ . . . . ............... .............................................................. . .. . . . . . .. ..... . . ............ . . .. . ... . . ........... . . . . . . . .. . . . . . . .. .. . . . . .. . .. ................................. .. . . .. ... .... . . ... . . .. . ................................................. ................ ............ ... . . .. . . ....... . . . ... . . .. . ... ... . .. . .. . . .. . ............................. .. .. . .... .
lowQualScore : 000 0 0 5 33333333 00000 4 4 000 0 0 0 0 000 88888 9999 0 0 0 0000000 0 77777777777777 0 2 0 4 2 0 0 99999999999999999999999999999999999999999999999999999999999999999999 55555 2222 0 0 11111111111 0 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 1 5 2 0 7 444 888 33 22 444444 7 99 999999999 99 0 77 3333333 7 88 777 7777777777777777777777777777777777777777 4 0 0 0 000000000000000 00000000000000000000000000000000000000000000000000000000000000 0 55 0 0 0 0 0 88 00000 0 0 000000000000 0 5 88 0 555 5 0 55555555555 0 0 7 7 0 7 2 55 8 0 7 3 7 7 33 33 7 3 0 3 77 0 00 333333333333333333333333333333333 77 0 0 00 000 8888 2 2 000 3 7 88 7 0000000000000000000000000000000000000000000000000 6666666666666666 888888888888 000 2 0 55 2 0 0000000 5 8 8 555 5 5 88 0 555 888 0 88 5 00 0 0 88 2 22222222222222222222222222222 88 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGGAAAAATGTG--TACCTT-----GGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATCA-AG-G-TTACG-----CG-ACNAT-GNA----A--GCAAA-----AACCG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------C--CTTGA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGA-TT--------------AATATATCT-----ATGTCA-TGNA-ATAC--TA----TCTT--ATTCACGTAC--NC---C-TA-A--T-AGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAAT-ATTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTCAAAAAN-AATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TAAT--TTTTGTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCG--CGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATATGAC------------T----G-A-C-TA-GA-T-AACTGAAACAA-CC-CATAAAAATAAATTGCTG------CT-------CTGTTCC------TTCTTTTT-T-TATCCTAGC-GAAGTTT-ACTC---ANAGATGATGGCGTTTTGTATTAATT---ATTATGTTAAAGAGCTGAGAT--ACAGG-TAC---GTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTTGGG-TA--G-GGTGGC----TTTTTT--AA--ATTTT-AATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGGAAAAATGTA--TACCTT-----GGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATTC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATCA-AG-G-TTACG-----CG-ACNAT-GAA----A--GNAAA-----AACCG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------C--CTNGA--CTCGA------C-ACA--TG---CTTTACGGNTA-----C--A----GCA-ATAA--AA----ATC--G--CCTTTAT-CGCCCACGA-ATGA-T---------------AATATATCT-----ATGTC--TGAA-ATACGCTA----TCTT--ATTCACGTAC--CC---T-TA-G--T-AGTCGTAATTGCACGCTTGCGNTGTAATNTACA-TNCA--CA-----CGATATATT-CCATG---T----ACGGCGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATAATTCTCATTCATGAGTGGGCACCAGTGANGCAGCCTAAAGTTATAAACTCAAAAAA-AATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTNCAACTAATTATTTNGTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTNCCNTTNNACANTATGAAATTG--CGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATATGACAA----------TGC-TG-A-C-TACGA-T-AACTGAAACAA-CCGCATAAAAATAAATTGCTG------CT-------CTGTTCC------TTCCTCTT-T-TATCCTAGC-GAAGTTT-ACTC--CAGAGATGATGGCGTTTTGTATTAATT---ATTATGTTAAAGAGCTGAGAT--ACAGG-TAC---GTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCC-G-GAGAGTTGCTTGGGGTTTTCTTGGG--N--G-GGTGGC----TTTTT-------ATTT--AATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGGAAAAATATAGTTACCTT-----GGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTAC---AAGGTTCTATACAGTGTTATGCACATCA-AG-G-TTACG-----CG-ACTAT-GGA----ACTGAAAA-----AATCG-CAA-AAT-AAC---------G-ATGGCA--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------C--CTAGA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGA-T---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGCCT---T-TT-A--T-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAAT-ATTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATTTTTGTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-G--CATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATATGACAAAAAAATAAGATTA-TG-AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCCTTTTTTTTTTTTTT-T-TATCCCAGCAAAAATTT-ATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TAC---GTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG-------GGG--G--G-GG----------------------TT--AGTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATATGA------------------G-A-C-T---------CTGAA-----CTCCATAAAAATAAATTGCTGGCCTTGTT-------CTGTTCC------TTCTTTTTAT-TA-CCTAGC-GAAGTTTTACTC---AGA-ATGATGGCGTTTTGTATTA--T---ATTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTTGGGTTA--G-GGTGGCTTGTTTTTT-------ATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccATTGGACCTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATATGAC----------------------------------TGAA-CAA-TC-CATAAAAATAAATTGCTG------CT---------GTTCTG-----TTCCCTTT-T-TATCCTAGC-GAAGTTT-ACTC-----AGATGATGGCGTTTTGTATTAATT---ATTATGT-AAAGAGCTGAGAT--ACAGG-TAC---GTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGGTA--GTGGTGGC----TTTTTTAAAA--ATTT--AATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CA-T-AC---AAG---CT------TAT-ATG-ACACCA-TG-G-TCATGGCAATCA-AATAT-AAATAATA--ATAAAAAAACAACAA-CAA-AAC-AACAGCAACAAAG-ATG-CA--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAATG--CACCTT-----GATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGT-AACAATGTA----CCTTCAGTTGGTAT-GTCA-TATTTAAC--TTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGGAAAAG---G--TACCCT-----AACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTCAAAAAT-AATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGGAAAA---TG--TACCTT-----G
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGC--CTTGA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGA-TT--------------AATACATCT-----AGGTCA-TGAA-------TA----TCTT--ATTCATGTAC--GC---C-TA-AATT-AGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAAT-ATTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTTAAAAG-----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TAATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATATGAC-A----------TGCATGTA-CATACGATT-AATTG-AACAA-TC-CATAAAAATATATTGCTG------CTGTTCTAGCTGTTCC------Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG---AAATGTA-----CTT-----GGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-ACACTAAG--TATATAC-------TG-ACATC--CG-G-TTA-------CG-ACGAT--CT----A--GCAAG-----AATGG-ACA-AAC-AAT---------C-ATA-CAAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------C--TTTGAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT---------------AATATATCC-----AT-TT--TACA-ACA----A----TC----ATCCATATAT--ACAAATATA----T-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTCAAAAAG-AATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTAAT--TTTTGTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCA--CATA-T---AATATGCAAAAGC------AATTTGCTACATAT---------------TGT-GG-A-T-TTGGA-T-AATTTAAAAAA-CAG-ACAGAAAGAAATTGC
gi|4 : ACAGAAAGAAATTG--CGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT----------------------A-G-TA-GA-T-AACTGAAAC----C-CATAAAAATAAATTGCTG------CT-------CTGTTCC------TT----TT-TATATCC-AGC--AATTTT-AC----AATAGAT-ATGGCGTTTTGTATTAATT---ATTATGT-AAAGAGC-GAGAT--ACAGG-TAC---GTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTTGGG--TTAG-TGTGGC----TTTTTTTTAAAAATTTT-AATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacagACTAATTGCAA---CAAAATGTTT-CT-AAACGGCAA---TATA--TACCTT-----GATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-GC---AAG--TTTA-A-------ATG-ACAT---AG-A-CT--G-----CG-ATAAT-GTA----A--ACAGC-----AA-CG-CAA-AAT-GAC---------G-ATG-CA--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------C--CTTGAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGA-T---------------
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T-A-----AG--CTTATAGGACAT--CG-ATATCA------CTAC----------------------------AA-----AATC---AA-AAT-AGA---------A-ATG-TA--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTT-CCTCCTAAC-GTCCAAA-T---CTTC-AGTTATA--GGCCTAA------ACA-GCAT--TG---------C--ATT-----TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGA-TTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTTTAT---TCTT--ATTTA-GTAA--TC---C-AATG--TCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTGtgata
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG--AAAATGTA----CCTT-----GGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTG-A-----TTCAAAAT-TTA-CT----AATCAT-GACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-AC---AAG-----AT----TAT-ATG-GCATTA-AAAG-TTACG--------ACGAT-GTA----A--ACAAA-----AAC-G-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------C--CTTGA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGGAAAA---TG--TACCTT-----GGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-AC--------TCTACGTAATAT-ATG--CATC--CG-G-TTA-------CG-ACGATCTAA----A--GAAAA-----GACAGTCAATAATCAAT---------GTATC-GA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAGAAAATTG----TACCTT-----GGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-AC---------CT---CAA--------GCATCATAG-GTTTAC------CGAAGCAT-GGA----A--GCAAA-----AAGCG-CAA-AAT-AAC---------G-ATG-CA--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 44444 11111 111 1 111 11111 2222222 22222222222222 77777777777777777777777777777777777777777777777777777777777777777777 222222222 22222222222 222222222 1111 1111 111 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 44444444444444 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 11111 55 00000 4 4 000 3 4 0 4 2 111 44444 5555 4 4 4 4444444 4 00000000000000 5 4 5 4 6 5 5 66666666666666666666666666666666666666666666666666666666666666666666 666666666 5 5 00000000000 5 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 333 0 5 5 777 222 99 88 666666 5 77 222222222 77 55 7777777 6 55 111 2 77777777777777777777777777777777777777 1 8 8 777777777777777 88888888888888888888888888888 4444 00 11 77777777777777 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 0 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 666666 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . ..... .. ..... . . ... . . . . . ... ..... .... . . . ....... . .............. . . . . . . . .................................................................... ......... . . ........... . .. .. ... . . . . . ......... . .... . .... ... . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .............. . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ...... ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 22222 55 00000 4 4 000 0 0 5 0 0 000 88888 9999 0 0 0 0000000 0 77777777777777 0 2 0 4 2 0 0 88888888888888888888888888888888888888888888888888888888888888888888 888888888 0 0 11111111111 0 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 888 2 0 7 555 888 22 33 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 22 88888888888888 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 000000 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGGAAAA---TG--TACCTT-----GGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATCA-AG-G-TTACG-----CG-ACNAT-GNA----A--GCAAAAA-----CCG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-A--T---AGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAA-TC-CATAAAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGGAAAAATGTG--TACCTT-----GGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATCA-AG-G-TTACG-----CG-ACNAT-GNA----A--GCAAAAA-----CCG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACNC--CTA--A--T---AGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAANAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAA-CC-CATAAAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGGAAAAATATAGTTACCTT-----GGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTAC---AAGGTTCTATACAGTGTTATGCACATCA-AG-G-TTACG-----CG-ACTAT-GGA----ACTGAAAAAA-----TCG-CAA-AAT-AAC---------G-ATGGCA--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTA--T---AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C---TC-CATAAAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAA-TC-CATAAAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCTC-A-T-AC---AAG---CT------TAT-ATG-ACACCA-TG-G-TCATGGCAATCA-AATAT-AAATAATA--ATAAAAAAACAACAA-CAA-AAC-AACAGCAACAAAG-ATG-CA--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAATG--CACCTT-----GATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTAACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTTAAC--TTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGGAAAAG---G--TACCCT-----AACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGGAAAA---TG--TACCTT-----G
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTA--AATT---AGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAA-TC-CATAAAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGGAAA-----TG--TAC-TT-----GGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-ACACTAAG--TATATAC-------TG-ACATC--CG-G-TTA-------CG-ACGAT-CT-----A--GCAAGAA-----TGG-ACA-AAC-AAT---------C-ATA-CAAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-A--T---AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAA-CA-GACAGAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC----C-CATAAAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGCAA---TATA--TACCTT-----GATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-GC---AAG--TTTA-A-------ATG-ACAT---AG-A-CT--G-----CG-ATAAT-GTA----A--ACAGCAA------CG-CAA-AAT-GAC---------G-ATG-CA--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T-A-----AG--CTTATAGGACAT--CG-ATATCA------CTAC----------------------------AAAA-----TC---AA-AAT-AGA---------A-ATG-TA--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTTCC-TCCTAAC-GTCCAAA-TC---TTC-AGT--TATAGGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--C-A--A--TGTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGGAAAA----TG--TACCTT-----GGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTG-A-----TTCAAAAT-TTA-CT----AATCAT-GACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-AC---AAG-----AT----TAT-ATG-GCATTA-AAAG-TTACG--------ACGAT-GTA----A--ACAAAAA-----C-G-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGGAAAA---TG--TACCTT-----GGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-AC--------TCTACGTAATAT-ATG--CATC--CG-G-TTA-------CG-ACGATCTAA----A--GAAAAGA-----CAGTCAATAATCAAT---------GTATC-GA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG-AAAAT-TG--TACCTT-----GGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-AC---------CT---CAA--------GCATCATAG-GTTTAC------CGAAGCAT-GGA----A--GCAAAAA-----GCG-CAA-AAT-AAC---------G-ATG-CA--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11111 111111 11111 22222 2222222222222 77777777777777777777777777777777777777777777777777777777777777777777 11111 1111 22222222222 222222222 1111 1111 111 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 11 1 2 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 111 55 00000 4 4 777 3 4 0 4 666666 66666 5555 4 4 4 66666 4 4 3333333333333 5 4 5 4 6 5 5 66666666666666666666666666666666666666666666666666666666666666666666 22222 4444 5 5 00000000000 5 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 333 0 5 5 777 222 99 88 666666 5 77 222222222 77 55 7777777 6 55 111 2 77777777777777777777777777777777777777 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 0 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... .. ..... . . ... . . . . ...... ..... .... . . . ..... . . ............. . . . . . . . .................................................................... ..... .... . . ........... . .. .. ... . . . . . ......... . .... . .... ... . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 55 00000 4 4 222 0 0 5 0 444444 33333 9999 0 0 0 00000 0 0 0000000000000 0 2 0 4 2 0 0 88888888888888888888888888888888888888888888888888888888888888888888 55555 2222 0 0 11111111111 0 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 888 2 0 7 555 888 22 33 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATC-A-AGG-TTACG-----CG-ACNAT-GNA----A--GCAAA-----AATCG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATC-A-AGG-TTACG-----CG-ACNAT-GNA----A--GCAAA-----AACCG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-AT-AGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATATAGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTAC---AAGGTTCTATACAGTGTTATGCACATC-A-AGG-TTACG-----CG-ACTAT-GGA----ACTGAAAA-----AATCG-CAA-AAT-AAC---------G-ATGGCA--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CA-T-AC---AAG---CT------TAT-ATG-ACACC-A-TGG-TCATGGCAATCA-AATAT-AAATAATA--ATAAAAAAACAACAA-CAA-AAC-AACAGCAACAAAG-ATG-CA--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---TG--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---GG--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---TG--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-ACACTAAG--TATATAC-------TG-ACATC---CGG-TTA-------CG-ACGAT-CT-----A--GCAAG-----AATGG-ACA-AAC-AAT---------C-ATA-CAAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---TA--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-GC---AAG--TTTA-A-------ATG-ACAT----AGA-CT--G-----CG-ATAAT-GTA----A--ACAGC-----AA-CG-CAA-AAT-GAC---------G-ATG-CA--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T-A-----AG--CTTATAGGACAT--CG-ATATC-A-----CTAC----------------------------AA-----AATC---AA-AAT-AGA---------A-ATG-TA--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTTCC-TCCTAAC-GTCCAAA-TC---TTC-AGT--TATAGGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-T----AGAGGGGA--AAG-A--TTATA-AA-TATTG-AT----T-CAAAAT-TTA-CT----AATCA-TGACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-AC---AAG-----AT----TAT-ATG-GCATTAA-AAG-TTA-------CG-ACGAT-GTA----A--ACAAA-----AA-CG-CAA-AAT-AAC---------G-ATG-CA--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-AC--------TCTACGTAATAT-ATG--CATC---CGG-TTA-------CG-ACGATCTAA----A--GAAAA-----GACAGTCAATAATCAAT---------GTATC-GA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAAT--TG--TACC-----TTGGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-AC---------CT---CAA--------GCATC-ATAGGTTTAC------CGAAGCAT-GGA----A--GCAAA-----AAGCG-CAA-AAT-AAC---------G-ATG-CA--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11111 111111 11111 22222 2222222222222 77777777777777777777777777777777777777777777777777777777777777777777 2222222 22222222222 1111 222222222 1111 1111 111 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 11 1 1 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 111 55 00000 4 4 777 3 4 0 4 666666 66666 5555 4 4 4 66666 4 4 3333333333333 5 4 5 4 6 5 5 77777777777777777777777777777777777777777777777777777777777777777777 2222222 66 00000000000 5 0000 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 333 0 5 5 777 222 99 88 666666 5 77 222222222 77 55 7777777 6 55 111 2 77777777777777777777777777777777777777 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 9 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... .. ..... . . ... . . . . ...... ..... .... . . . ..... . . ............. . . . . . . . .................................................................... ....... .. ........... . .... .. .. ... . . . . . ......... . .... . .... ... . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 55 00000 4 4 222 0 0 5 0 444444 33333 9999 0 0 0 00000 0 0 0000000000000 0 2 0 4 2 0 0 66666666666666666666666666666666666666666666666666666666666666666666 8888888 99 11111111111 0 6666 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 888 2 0 7 555 888 22 33 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATC-A-AGG-TTAC-GCG-AC--GATGTAA--GC-------AAAAA-C----GCAA--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATC-A-AGG-TTAC-GCG-AC--NATGNAA--GC-------AAAAATC----GCAA--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATATAGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTAC---AAGGTTCTATACAGTGTTATGCACATC-A-AGG-TTAC-GCG-AC--TATGGAACTGA-------AAAAATC----GCAA--AATAA-C---------GATGGC----A--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CA-T-AC---AAG---CT------TAT-ATG-ACACC-A-TGG-TCATGGCA-ATCAAATATAA--ATAATAATAAAAAAACAACAACAA--AACAA-CAGCAACAAAGATG-C----A--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---TG--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---GG--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---TG--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-ACACTAAG--TATATAC-------TG-ACATC---CGG-TTA---CG-AC--GATCT-A--GC-------AAGAATG----GACA--AACAA-T---------CATA-C----AAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---TA--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-GC---AAG--TTTA-A-------ATG-ACAT----AGA-CT---GCG-AT--AATGTAA--AC-------AGCAA-C----GCAA--AATGA-C---------GATG-C----A--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T-A-----AG--CTTATAGGACAT--CG-ATATC-A-----CTAC----------------------------AAAATC------AA--AATAG-A---------AATG-T----A--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTTCC-TCCTAAC-GTCCAAA-TC---TTC-AGT--TATAGGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-T----AGAGGGGA--AAG-A--TTATA-AA-TATTG-AT----T-CAAAAT-TTA-CT----AATCA-TGACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-AC---AAG-----AT----TAT-ATG-GCATTAA-AAG-TTA---CG-AC--GATGTAA--AC-------AAAAA-C----GCAA--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-AC--------TCTACGTAATAT-ATG--CATC---CGG-TTA---CG-AC--GATCTAA--AG-------AAAAG------ACAGTCAATAATC---------AATG-TATCGA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAAT--TG--TACC-----TTGGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-AC---------CT---CAA--------GCATC-ATAGGTTTAC--CGAAG--CATGGAA--GC-------AAAAAGC----GCAA--AATAA-C---------GATG-C----A--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11111 1 111 11111 2222222 22222222222222 777777777777777777777 11111 33333333333333333333333333333 111111 22222222222 1111 222222222 1111 1111 111 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 11 1 1 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 111 55 00000 4 4 777 3 4 0 4 2 111 44444 5555 4 4 4 4444444 4 00000000000000 5 4 5 4 6 5 5 999999999999999999999 55 33333 5 33333333333333333333333333333 888888 5 66 00000000000 5 0000 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 333 0 5 5 777 222 99 88 666666 5 77 222222222 77 55 7777777 6 55 111 2 22222222222222222222222222222222222222 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 9 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... .. ..... . . ... . . . . . ... ..... .... . . . ....... . .............. . . . . . . . ..................... .. ..... . ............................. ...... . .. ........... . .... .. .. ... . . . . . ......... . .... . .... ... . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 55 00000 4 4 222 0 0 5 0 0 000 88888 9999 0 0 0 0000000 0 77777777777777 0 2 0 4 2 0 0 888888888888888888888 99 55555 0 55555555555555555555555555555 999999 0 99 11111111111 0 6666 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 888 2 0 7 555 888 22 33 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTAT-CA-TAT-ATG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------CA-CA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-AC---AAG--TCTATACAATAT-ATG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------CA-CA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATATAGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTAC---AAGGTTCTATACAGTGTTATGCACATCA-AG-G-TTAC-GCGAC--T-ATGGAACTGA--------AAAAATC----GCA-A--AATAA-C---------GATGGC----A--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------CA-CA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CA-T-AC---AAG---CT------TAT-ATG-ACACCA-TG-G-TCATGGCAATCAA-ATATAA--ATAATAATAAAAAAA-CAACAACA-A--AACAA-CAGCAACAAAGATG-C----A--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---TG--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---GG--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------CA-TA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----CA-CACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---TG--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-ACACTAAG--TATATAC-------TG-ACATC--CG-G-TTA---CGAC--G-ATCT-A--GC--------AAGAA-T----GGACA--AACAA-T---------CATA-C----AAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---CG-CAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---TA--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-GC---AAG--TTTA------A--ATG-ACAT---AG-A-CT---GCGAT--A-ATGTAA--AC--------AGCAA-C----GCA-A--AATGA-C---------GATG-C----A--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCCA-CA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T-A-----AG---CT------TAT-AGG-ACATCG-AT-A-TCAC-------------TA----C--------AAAA-------TCA-A--AATAG-A---------AATG-T----A--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTTCC-TCCTAAC-GTCCAAA-TC---TTC-AGT--TATAGGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GCA--TAA--AA----ATC------CTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTG-A-----TTCAAAAT-TTA-CT----AATCAT-GACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-AC---AAG-----AT----TAT-ATG-GCATTA-AAAG-TTAC-G--AC--G-ATGTAA--AC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-AC--------TCTACGTAATAT-ATG--CATC--CG-G-TTA---CGAC--G-ATCTAA--A---------GAAAA-G----ACA-GTCAATAATC---------AATG-TATCGA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAAT--TG--TACC-----TTGGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-AC---------CT---CAA--------GCATCATAG-GTTTAC--CGAA--GCATGGAA--GC--------AAAAAGC----GCA-A--AATAA-C---------GATG-C----A--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11111 1 111 11111 2222222 22222222222222 7777777777777777777777 11111 33333333333333333333333333333 111111 22222222222 1111 222222222 1111 1111 1 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 11 1 1 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 111 55 00000 4 4 777 3 4 0 4 2 111 44444 5555 4 4 4 4444444 4 00000000000000 5 4 5 4 6 8888888888888888888888 88 5 55 33333 5 33333333333333333333333333333 888888 5 66 00000000000 5 0000 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 8 2 0 5 5 222 222 88 99 666666 5 77 222222222 77 55 7777777 6 55 111 2 77777777777777777777777777777777777777 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 9 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... .. ..... . . ... . . . . . ... ..... .... . . . ....... . .............. . . . . . ...................... .. . .. ..... . ............................. ...... . .. ........... . .... .. .. ... . . . . . ......... . .... . .... . . . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 55 00000 4 4 222 0 0 5 0 0 000 88888 9999 0 0 0 0000000 0 77777777777777 0 2 0 4 2 5555555555555555555555 22 0 99 55555 0 55555555555555555555555555555 999999 0 99 11111111111 0 6666 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 1 5 2 0 7 444 888 33 22 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCAT-AC---AAG--TCTA--T----TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCAT-AC---AAG--TCTA--T-CA-TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATATAGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCATTAC---AAGGTTCTA--TACAGTGTTA-TGCACATCA-AG-G-TTAC-GCGAC--T-ATGGAACTGA--------AAAAATC----GCA-A--AATAA-C---------GATGGC----A--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CAT-AC---AAG---CT--------TAT-A-TG-ACACCA-TG-G-TCATGGCAATCAA-ATATAA--ATAATAATAAAAAAA-CAACAACA-A--AACAA-CAGCAACAAAGATG-C----A--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---TG--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---GG--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---TG--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCAT-ACACTAAG--T--------A-TAT-ACTG-ACATC--CG-G-TTA---CGAC--G-ATCT-A--GC--------AAGAA-T----GGACA--AACAA-T---------CATA-C----AAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---TA--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCAA-GC---AAG--TTTA--------A--A-TG-ACAT---AG-A-CT---GCGAT--A-ATGTAA--AC--------AGCAA-C----GCA-A--AATGA-C---------GATG-C----A--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCTT------AAG---CT--------TAT-A-GG-ACATCG-AT-A-TCAC-------------TA----C--------AAAA-------TCA-A--AATAG-A---------AATG-T----A--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTT-CCTCCTAAC-GTCCAAA-T---CTTC-AGTTATA--GGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTG-A-----TTCAAAAT-TTA-CT----AATCAT-GACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCAT-AC---AAG-----A--T----TAT-A-TG-GCATTA-AAAG-TTAC-G--AC--G-ATGTAA--AC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCAT-AC--------TCTACGT-AA-TAT-A-TG--CATC--CG-G-TTA---CGAC--G-ATCTAA--A---------GAAAA-G----ACA-GTCAATAATC---------AATG-TATCGA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAAT--TG--TACC-----TTGGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCAT-------------TA--C-CT-CA-----A-GCATCATAG-GTTTAC--CGAA--GCATGGAA--GC--------AAAAAGC----GCA-A--AATAA-C---------GATG-C----A--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11111 1 111 11111 2222222 22222222222222 11111 6666666666666 11111 33333333333333333333333333333 111111 22222222222 1111 222222222 1111 1111 1 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 11 1 1 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 111 55 00000 4 4 777 3 4 0 4 2 111 44444 5555 4 4 4 4444444 4 00000000000000 5 4 5 4 6 5 22222 0 9999999999999 5 5 77 33333 5 33333333333333333333333333333 888888 5 66 00000000000 5 0000 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 8 2 0 5 5 222 222 88 99 666666 5 77 222222222 77 55 7777777 6 55 111 2 77777777777777777777777777777777777777 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 9 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... .. ..... . . ... . . . . . ... ..... .... . . . ....... . .............. . . . . . . ..... . ............. . . .. ..... . ............................. ...... . .. ........... . .... .. .. ... . . . . . ......... . .... . .... . . . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 55 00000 4 4 222 0 0 5 0 0 000 88888 9999 0 0 0 0000000 0 77777777777777 0 2 0 4 2 0 88888 1 9999999999999 0 0 00 55555 0 55555555555555555555555555555 999999 0 99 11111111111 0 6666 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 1 5 2 0 7 444 888 33 22 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-A---CAAG--TCTA--T----TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-A---CAAG--TCTA--T----TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATATAGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTA---CAAGGTTCTA--TACAGTGTTA-TGCACATCA-AG-G-TTAC-GCGAC--T-ATGGAACTGA--------AAAAATC----GCA-A--AATAA-C---------GATGGC----A--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CA-T-A---CAAG--C-----T----TAT-A-TG-ACACCA-TG-G-TCATGGCAATCAA-ATATAA--ATAATAATAAAAAAA-CAACAACA-A--AACAA-CAGCAACAAAGATG-C----A--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---TG--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---GG--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---TG--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-A---CA-----CTAAGTA---TAT-ACTG-ACATC--CG-G-TTA---CGAC--G-ATCT-A--GC--------AAGAA-T----GGACA--AACAA-T---------CATA-C----AAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---TA--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-G---CAAG--T-----T----TAA-A-TG-ACAT---AG-A-CT---GCGAT--A-ATGTAA--AC--------AGCAA-C----GCA-A--AATGA-C---------GATG-C----A--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T------AAG--C-----T----TAT-A-GG-ACATCG-AT-A-TCAC-------------TA----C--------AAAA-------TCA-A--AATAG-A---------AATG-T----A--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTT-CCTCCTAAC-GTCCAAA-T---CTTC-AGTTATA--GGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTG-A-----TTCAAAAT-TTA-CT----AATCAT-GACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-A---CAAG-----A--T----TAT-A-TG-GCATTA-AAAG-TTAC-G--AC--G-ATGTAA--AC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-A---C-----TCTA--CGTAATAT-A-TG--CATC--CG-G-TTA---CGAC--G-ATCTAA--A---------GAAAA-G----ACA-GTCAATAATC---------AATG-TATCGA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAAT--TG--TACC-----TTGGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-ACCTCAAG-----------------------CATCATAG-GTTTAC--CGAA--GCATGGAA--GC--------AAAAAGC----GCA-A--AATAA-C---------GATG-C----A--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11111 1 111 11111 2222222 22222222222222 11111 6666666666666 11111 33333333333333333333333333333 111111 22222222222 1111 222222222 1111 1111 1 111 111 11 111111 222222222 11 4444444 11 111 33333333333333333333333333333333333333 444444444444444 77777777777777777777777777777 1111 11 11 1 1 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 11111111111111111111111111111111111111111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 111 55 00000 4 4 777 3 4 0 4 2 111 44444 5555 4 4 4 4444444 4 00000000000000 5 4 5 4 6 5 22222 0 9999999999999 5 5 77 33333 5 33333333333333333333333333333 888888 5 66 00000000000 5 0000 66 77 666 0 3 5 3 5 666666666 0 3333 0 8888 8 2 0 5 5 222 222 88 99 666666 5 77 222222222 77 55 7777777 6 55 111 2 77777777777777777777777777777777777777 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 9 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 77777777777777777777777777777777777777777 3 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... .. ..... . . ... . . . . . ... ..... .... . . . ....... . .............. . . . . . . ..... . ............. . . .. ..... . ............................. ...... . .. ........... . .... .. .. ... . . . . . ......... . .... . .... . . . . . ... ... .. .. ...... . .. ......... .. .. ....... . .. ... . ...................................... . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ......................................... . ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 55 00000 4 4 222 0 0 5 0 0 000 88888 9999 0 0 0 0000000 0 77777777777777 0 2 0 4 2 0 88888 1 9999999999999 0 0 00 55555 0 55555555555555555555555555555 999999 0 99 11111111111 0 6666 99 99 222 1 4 0 4 0 000000000 4 4444 4 9999 1 5 2 0 7 444 888 33 22 444444 7 99 999999999 99 77 3333333 7 88 777 5 88888888888888888888888888888888888888 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 88888888888888888888888888888888888888888 2 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-A---CAAG--TCTA--T----TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-A---CAAG--TCTA--T----TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATATAGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTC-A-----T-TAAAAT-TTA-ATC---AATTATTGACA-TTCAAAGAGTAT-GGCCA-CTGGCGCTCCA-TTA---CAAGGTTCTA--TACAGTGTTA-TGCACATCA-AG-G-TTAC-GCGAC--T-ATGGAACTGA--------AAAAATC----GCA-A--AATAA-C---------GATGGC----A--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------C-ACA--TG---CTCTACGGGTA-----C--A----GCATATAA--GA----ATC--A--CCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATG-----AAC-TATGA-TTAACTGAAACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GA-----------------G-----A-C-T---------CTGAA-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A------------------ACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATG-T-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCC-AC----T-CAAAGT-GTA-CT----GTTTTATG-TA-TTCGAA-TGTAA-GGCCAGCCGGCGCT-CA-T-A---CAAG--C-----T----TAT-A-TG-ACACCA-TG-G-TCATGGCAATCAA-ATATAA--ATAATAATAAAAAAA-CAACAACA-A--AACAA-CAGCAACAAAGATG-C----A--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---TG--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTC-A-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCAA-----T-CAAAAT-TTA-GT----AATT-CTGAAA-TTC-AA-AGTAT-GGACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---TG--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATAC-A-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTC-AGGTTTT-TTAGAT-TTG-ATATCCAATTAT
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---GG--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTC-A-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTA-AG----T-CAAAAT-ATG-AT----ga
gi|16 : ttgaagaattattgggaatatAGTATGTAACGAAA--GGCTGTA-TG-ATTCC-TTCAAAA-GTCCAAA-CT-Gct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-cataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------C-ATA--TG---CTCTACGGGTACATTTC--A----GC--ATAA--AA----
gi|2 : AGTATGTAACGAAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TTTGTTACATAT--TA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGAT-----C-ACACTTG---CTTTACATTT------C--A----GCA-A-AA--AA----TTC--G--CCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GACA--------------TGCATGTA-CATACGATT-AATTG-AACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---TG--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCT-ATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTC-A-----C-CCAA----TAGAA----AATT--TGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-A---CA-----CTAAGTA---TAT-ACTG-ACATC--CG-G-TTA---CGAC--G-ATCT-A--GC--------AAGAA-T----GGACA--AACAA-T---------CATA-C----AAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-GTAAA--CCTG------GTTAACTCACAGATGTCAAAT-CT-GATT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAATT---C-GCAC-TGTGACTTTATAGTCA-----CTAA----TTA-GTGAGTAC----ATT--GAATTTTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGAT---------------T----------TG-GA-T-AATTTAAAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----------------------------A-G-TA-GA-T-AACTGAAAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---TA--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATC-ACGA---AAAGGAAA--AA-----CTACA-AAGCATTC-A-----TTCAAAAT-T-----------------ACA-TTCAAA-AGTAT-GGCCAACCGGCGCTCCA-A-G---CAAG--T-----T----TAA-A-TG-ACAT---AG-A-CT---GCGAT--A-ATGTAA--AC--------AGCAA-C----GCA-A--AATGA-C---------GATG-C----A--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACGAAGA-GG-TGTA---TATT-CCTTCTAAC-GCT-----CT--TTTT-CATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCC-ACA--TG---CTTTACGGGTA-----C--ATTTTAAA-ATAA--AATTACATTTAA--CCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTAT-AGCCAGCAGGCGCTCCT-T------AAG--C-----T----TAT-A-GG-ACATCG-AT-A-TCAC-------------TA----C--------AAAA-------TCA-A--AATAG-A---------AATG-T----A--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAA-AAAAAAG-TGTGTT-CCTCCTAAC-GTCCAAA-T---CTTC-AGTTATA--GGCCTAA------ACA-GCAT--TG---------CATT-------TTAG------CAACA--TG---TTT-------------C--A----GC--ATAA--AA----AT------CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTC-A-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTG-A-----TTCAAAAT-TTA-CT----AATCAT-GACA-TTCAAA-AGTAT-GATCAGGCGGCGCTCCA-T-A---CAAG-----A--T----TAT-A-TG-GCATTA-AAAG-TTAC-G--AC--G-ATGTAA--AC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACGAAAA-G---GTA-TATATT-CCTTCCGAA-GTCCAAATCT-G-TTA-CAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCT-ATGA---AGGGG-----AAA-A--CCATA-AA-TTTTC-A-----C-CAAAATATGA-AA----AAT--TTGACA-TTCGAA-AGTAT-GACCAGCCGACGC-CCA-T-A---C-----TCTA--CGTAATAT-A-TG--CATC--CG-G-TTA---CGAC--G-ATCTAA--A---------GAAAA-G----ACA-GTCAATAATC---------AATG-TATCGA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAAT--TG--TACC-----TTGGTATCATCA-TA-TTAAA-ATTCCAAAAGTTTAGAAAACATCCAA-GA---AGGG---A--AAG-G--TTATACAA-TATTC-AT----T-TAAAAT-TTA-AT----AA-TATGAGCATTTCAAA-AGTATGGGCCAGCCGGCG--CCATT-ACCTCAAG-----------------------CATCATAG-GTTTAC--CGAA--GCATGGAA--GC--------AAAAAGC----GCA-A--AATAA-C---------GATG-C----A--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-AAA-GGCTGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
blockSeqs : TTA T T GGAA T . TTCAG C A AT A C A T TAG GAATT TA C G A GGTTTT A CTGTTTTAT T G . G T T ACCT TCTACGTAA . C A AAAA T TGGCAATCAAATATAAATAATAATAA CAACA C TC CAGCAACAAA . ATCG AG AT AA G G G T TTATACATG GGC TGT C C T T TGT CAT TG GT TTCCCC A GC GCTAAATTG TA GT AATTTCC A CT TGA G ACATTTTAAAATAAAATTACATTTAA A . . TTTGGCTATGCCATG GTTACATGTTGCATTACTTTAT TT TG AA . T A T C G A AA TTGAT A G TATGTATAA G CA A CAA G A ACCATTTGGAA T . A A . T A A N . N N . NN N N C . A A C AGGTACAATCAAAAAA TT AC AGT C T TCG A C GC A GACATGCATGTACATACGATT A AAT . CTGTTCTAGC G CTT A . T T G GT T G G G A . T T TG A CAT GTA T AT G G . A GT G TT T T G TTAAAAAT G TG G . T
blockSeqs : . . . A . . . . . CT G . . C T AGG A . . . CT . GTAATTCT . G . . T . A CTAAGTA . . A ATAG . CCGAAGCATGGAAGC GC . . TC . . . GC TA A . A . TG AAA TAT C C . . GA TC TA . . . . . . AT AATT . C . T ACTAATTAGTGAGTACATTGAA T . . T AGGTCATGAATA TT TA . . C G G A . T . . T . CAGAGAT C A . . G . A . G N . A . T T . GC T C . . . . T T AG AGA T T . C . A . TGTGGATTTGGAT A AAT . GCCTTGTTC . CCC . . T T G G T T G G A . . T . . . A . . G . . A GT . TT . T . AAAAA . TG . . T
blockSeqs : . . . G . . . . . CT G . . T . AAA A . . . GT . GAAAATTT . A . . T . A CT . . A ATG . GCGATAATGTAAAC T . . T . . . GC TG A . T . TA GGC TG A C . . T CA . . . . . . . . AT . . . T CAGCAAAAAATTCG A . . T ATTTTACAACAA . G . . . A T T . T . . T . ATGT T T . . . A . . . . A . . . . . . . AGTAGAT A AAC . CTC . . . . . . . T . . . . . . . . . . . . . . . . . . . . T . T . TTAT . . . . .
blockSeqs : . . . G . . . . . TT G . . . . AAA A . . . TT . CTAATCAT . A . . T . G TT . . A GAT . CGACGATGTAAAC C . . C . . . GC CA G . T . GA GG TG . C . . C AC . . . . . . . . G . . . G CAGCATAAAAAT C . . T . . . . . GAGACT . T . CT .
blockSeqs : . . . C . . . . . GT T . . . . GAA A . . . TT . ATAATATG . G . . . . A CT . . G CG . CGACGATCTAGC C . . A . . . GC TA G . T . T CC T . C . . G . . . . . . . . . . . . . . . . . . GACTGA . . .
blockSeqs : . . . G . . . . . CA A . . . . A A . . . TT . AAAATTT . A . . . . A AT . . . AG . CGACGATCTAAA G . . C . . . A CA . . T . T GG T . . . . . . . . . .
blockSeqs : . . . G . . . . . AT A . . . . A A . . . T . . . . . . . . . . . . . CG . CTAC . . . C . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . A C . . . . A G . . . C . .
blockSeqs : . . . . . . . A . . . . . . . . . C .
blockSeqCons : *** ** A*** TT***** GTAATTTT****** A**** CT*********** A* AG*** CGACGATNTAAAC**************** C***** GC TA* GG** TG** N** AT***** ACTTAGCATAAAAATTCG******************** T************** GACTTGAT********************************* **
originalCons : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTC-A-----T-CAAAAT-TTA-AT----AATTATTGACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-T-A---CAAG--TCTA--T----TAT-A-TG-ACATCA-AG-G-TTAC-GCGAC--G-ATGTAA--GC--------AAAAA-C----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAA-GGCTGTA-TGTATTCCCTTCCAAA-GTCCAAA-CT-GTTTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA------C-ACA--TG---CTTTACGGGTA-----C--A----GCA-ATAA--AA----ATC--G--CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GAC---------------TG-----A-C-TA-GA-T-AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
finalCons : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---TG--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCC-A-GA---AGGGGGAA--AAGA---CTATA-AA-TATTC-ATT-----CAAAAT-TTAGTAATTTT------GACA-TTCGAA-AGTAT-GGCCAGCCGGCGCTCCA-TA----CAAGCT-----------TAT-A-TGA-CATCAG---G-TTACGACGATNTAAAC----------------AAAAAC-----GCA-A--AATAA-C---------GATG-C----A--TTACGCATGTA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACGAAAAGG--TGTATG--ATTCCCTTCCAAA-GTCCAAA-CTN--TTC-CAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGAT-----C-ACA--TG---CTTTACGGGTACTTAGCATAAAAATTCG--------------------CCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATATGACTTGAT---------------------------------AACTGAAACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111 11111 1 111 22222 1111111111 1 333333333333333333333333 22222 111111111 11111111 1111111 22222222222 1111 222222222 11111 1111 2 111 11 22 111111 222222222 11 3333333 11 111 444444 22222222222222 444444444444444 77777777777777777777777777777 1111 11 11 1 1 1 11 22222 1 333333333333 1 111 44444444444 1 1 1 1 1 1 1 1 11 11 1 1 1 11 1 1 11 888888888888888888888888888888888 11 111 1 111 1 11 111111111111111111111111111111111111111111111 111 4444444444444444 1 222222 22 2222 1 111 1 1 11 1 111 333 1 11 1 1 11 1 222 1 1 33333333 1 11 1 2222
lowQualScore : 777 4 4 1111 777 4 55 00000 4 4 0 777 3 4 0 6 111 00000 4 55 4 4 999 7777777777 4 8 4 4 9 0 444444444444444444444444 5 77 44444 5 5 2 5 5 444444444 66 888 88888888 6666666 5 66 00000000000 5 0000 66 77 666 0 3 5 3 5 666666666 22222 7777 9999 0 0 5 5 333 66 77 99 666666 5 77 222222222 77 55 9999999 55 111 4 7777 000000 99 6 99999999999999 1 8 8 777777777777777 88888888888888888888888888888 4444 00 00 33 0 9 2 00 1 1 0 0 1 33 55555 1 0 333333333333 1 99 0 777 2 1 33333333333 1 5 3 0 3 0 8 5 0 0 3 0 0 88 22 0 0 3 88 3 3 44 666666666666666666666666666666666 44 44 000 2 0 3 444 3 6 55 6 666666666666666666666666666666666666666666666 1 111 888 99 1111111111111111 8 888 0 888888 3 7 6 00 0000 0 2 8 9 777 5 5 33 0 777 222 0 33 2 0 0 7 11 0 0 333 0 3 0 88888888 0 88 0 1111 9
lowQualScore : ... . . .... ... . .. ..... . . . ... . . . . ... ..... . .. . . ... .......... . . . . . . ........................ . .. ..... . . . . . ......... .. ... ........ ....... . .. ........... . .... .. .. ... . . . . . ......... ..... .... .... . . . . ... .. .. .. ...... . .. ......... .. .. ....... .. ... . .... ...... .. . .............. . . . ............... ............................. .... .. .. .. . . . .. . . . . . .. ..... . . ............ . .. . ... . . ........... . . . . . . . . . . . . . .. .. . . . .. . . .. ................................. .. .. ... . . . ... . . .. . ............................................. . ... ... .. ................ . ... . ...... . . . .. .... . . . . ... . . .. . ... ... . .. . . . . .. . . ... . . . ........ . .. . .... .
lowQualScore : 000 0 0 1111 000 0 55 00000 4 4 8 222 0 0 5 0 000 66666 0 55 0 0 444 8888888888 4 2 4 4 4 0 888888888888888888888888 0 00 55555 0 0 0 0 0 555555555 99 888 11111111 0000000 0 99 11111111111 0 6666 99 99 999 1 4 0 4 0 000000000 55555 6666 0000 1 2 0 7 444 00 55 22 444444 7 99 999999999 99 77 7777777 88 777 2 5555 888888 22 7 99999999999999 0 0 0 888888888888888 22222222222222222222222222222 0000 88 55 88 0 0 0 55 0 2 2 0 0 88 00000 0 0 000000000000 0 88 0 555 5 0 55555555555 0 5 3 7 2 0 8 8 0 7 3 7 7 33 33 7 3 3 33 3 3 00 333333333333333333333333333333333 77 00 222 0 7 2 000 3 7 88 7 888888888888888888888888888888888888888888888 0 777 222 22 6666666666666666 0 000 0 888888 2 0 5 22 8888 8 5 8 8 555 5 5 88 0 555 888 0 88 5 0 0 0 88 2 0 222 0 2 0 88888888 0 00 0 2222 8
consensus : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---T-G--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCCA-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTCA--TTCAAAATTTAGT-AATT-T-TGACATT-CGAA-AGTATGG-CCAGCCGGCGCTCCAT-AC-------AAG---CT-TA------TA-TG-ACATC--A-GGTT-AC-GACG-A-TN-----TA-A--AC---AA--------AAA-CG----CA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACG-----AAAA-GG-TGTA-TG-ATT-CCTTCCAAA-GTCCAAA-CT-N-TT-NCAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA-----CCACA--TG---CTTTACGGGTAC---TT-AGC--ATA-AA---A----ATTC-GCCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GA--------------------CT-T-G-------AT-A--ACTGA---AACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
Reference ( family-977 ) : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAA---T-G--TACC-----TTGGTAT-ATCA-TATTTAAA-ATTCCGAAAGTTTAGAAAA-ATCCA-GA---AGGGGGAA--AAG-A--CTATA-AA-TATTCA--TTCAAAATTTAGT-AATT-T-TGACATT-CGAA-AGTATGG-CCAGCCGGCGCTCCAT-AC-------AAG---CT-TA------TA-TG-ACATC--A-GGTT-AC-GACG-A-TN-----TA-A--AC---AA--------AAA-CG----CA-A--AATAA-C---------GATG-C----A--TTACGCATGTA-AATGAAATAA-ATCACC-TCAT-------TGTACCTTTCAAGTATGTAACG-----AAAA-GG-TGTA-TG-ATTCCCTTCCAAA-GTCCAAA-CT-N-TT-CCAT--TA--GGCCTAA------ATA-GCAT--TG---------CCTT--GA--CTCGA-----TCACA--TG---CTTTACGGGTAC---TT-AGC--ATA-AA---A----ATTC-GCCTNTAT-CGCCCACGA-ATGATT--------------AATATATCT-----ATGTCA-TGNA-ATAC-----TA-TCTT--ATTCACGTACGC--CTAT-ATCAGCCGTAATTGCACGCNTGCGTTGTAATCTACA-TNCA--CA-----CGATATNTT-CCATG---T----ATGGNGCGCCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGANTAGTCGCAAACCATTTGGAATTCATATCATNCGTTCTATTTTGTCTTTCTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCTAAAGTTATAAACTC-AAAAAGAATAGAAAGATCACCAACGCAT-TAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTACAA-TA--ATT-TTT-GTTCTATTGAGGTACAATGTACCGTAGATAAAAAAAANAAAATCGGCTTGACATTGCCATTAAACAGNATGAAATCGCGTATT---AGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GA--------------------CT-T-G-------AT-A--ACTGA---AACAATCCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TTCTTTTT-TT------ATCCTAGCGAAG-TTTACT---CANAGATGATGGCGTTTTGTATTAATTA---TTATGTTAAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGCG--AGCTCT-GATA--TCAGCAAAGTGTTCT-G-GAGAGTTGCTTGGGGTTTTCTT-GGG-T-AG-GGTGGCTT-TTTT----AAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGT
gi|1 : ACTAATTGCAA---CAAAATGTTT-CT-CAACGGG---AAAAATAT-AGTTACC-----TTGGTAT-GTCA--ATTGAAA-ATTCCAAAAGTTTAGAAAA-ATCCA-GA---AGGGGGAA--AAG-GGGTTATA-AA-TATTCA--TT-AAAATTTAATCAATTAT-TGACATT-CAAAGAGTATGG-CCA-CTGGCGCTCCATTAC-------AAGGTTCTATACAGTGTTA-TGCACATC--AAGGTT-AC-G-CG-ACTA-----TGGA--ACTGAAA--------AAATCG----CA-A--AATAA-C---------GATGGC----A--TTACG-ATGCACAATGAAATAA-ATTACC-TCAT-------TGTACCTTTCAAGTATGTAACG-----AAAACGGCTGTACTGTATTCCCTTCCAAA-GTCCAAA-CT-G-TTTCCAT--TA--GGCCTAA-------TA-GCAA--TG---------CCTA--GA--CTCG-------CACA--TG---CTCTACGGGTAC------AGC--ATATAA---G----AATC-ACCTTTATTCATCCACGATCTGAT---------------AATATATCT-----ATGTCAATGAATATACAGTAATAATCTTTAATTCACCTACGC--CTTTTAT-AACCATAATTAGACGCGTGTGTTGTAATCTACA-TGCA--CA-----CGATATATT-C-ATG---T----ATGGGGCACCATACAGAT-TAAAATT---CAATAAATTGTATAATGCGACTAGTCACAA-----------TTCATATCATGCGTTTTATTTTGTTTTTTTCAATA-TTCTCATTCGTGAGTGGACACCAGTGAGGCAACCT-AAGTTATAAACTCAAAAAAGAATAGAAAGATCACCAACGCAT-TAAGAG-ATAAACAAATAAA-TTCA-TTGAACTTGACCAGTTTCGACTGTTTG--GTCG-TCAT-CAGTACAA-TAATATT-TTT-GTTCTATTGA
gi|1 : TCAGCT-GGCATTGCCATAAAACATCATGAAAT-GCATATT---AGCCTGC-ACTGCCTTC-GGTTTT--T-CATAT----GACAAAAAAATAAGATTATGAACTAT-G-------ATTA--ACTGA---AACAAACCACATGAATATAAATTGCTG------CA-------TTGTTCC-TTTTTTTT-TTTTTTTTATCCCAGCAAAAATTTATTTCACAAAGATTATGCGGTTTTGTATTTTTTAAAATTATGTTAAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGC---AGCTCT-GATA--TCAGCAAAGTGTTCT-GTGGGAGTTGCATGGGG--------GGG---GG-GG--------------------TTA-GTTT--GATTCACTCCTTT-GGCAATTTTCCAAATGGATTGAACGTTCATGTtcattcagctggcattgccataaaacatcatgaaatgcatattagcctgcactgccttcggtttttcatatgacaaaaaaataagattatgaactatgattaactgaaacaaaccacatgaatataaattgctgcattgttccttttttttttttttttatcccagcaaaaatttatttcacaaagattatgcggttttgtattttttaaaattatgttaaagagcgagatacaggtacgtcgattggcagctctgatatcagcaaagtgttctgtgggagttgcatgggggggggggttagtttgattcactcctttggcaattttccaaatggattgaacgttcatgt
gi|10 : actaattgcaacaaaatgtttctcaacgggaaaaatatagttaccttggtatgtcaattgaaaattccaaaagtttagaaaaatccagaagggggaaaaggggttataaatattcattaaaatttaatcaattattgacattcaaagagtatggccactggcgctccattacaaggttctatacagtgttatgcacatcaaggttacgcgactatggaactgaaaaaatcgcaaaataacgatggcattacgatgcacaatgaaataaattacctcattgtacctttcaagtatgtaacgaaaacggctgtactgtattcccttccaaagtccaaactgtttccattaggcctaatagcaatgcctagactcgcacatgctctacgggtacagcatataagaatcacctttattcatccacgatctgataatatatctatgtcaatgaatatacagtaataatctttaattcacctacgccttttataaccataattagacgcgtgtgttgtaatctacatgcacacgatatattcatgtatggggcaccatacagattaaaattcaataaattgtataatgcgactagtcacaattcatatcatgcgttttattttgtttttttcaatattctcattcgtgagtggacaccagtgaggcaacctaagttataaactcaaaaaagaatagaaagatcaccaacgcattaagagataaacaaataaattcattgaacttgaccagtttcgactgtttggtcgtcatcagtacaataatatttttgttctattgatcatC-ACTGCCTTCCGGATTT--T-CATAT----GAGA------------------CT------------------CTGA---A-C--TCCATA--AAAATAAATTGCTGGCCTTGTT-------CTGTTCC-TTCTTTTTATT------A-CCTAGCGAAGTTTTACT---CAGA-ATGATGGCGTTTTGTATTA--TA---TTATGTTAAAGAGCTAAGATTGACAGGATACATCGTCGAGTGGCGTAAGCTCT-GATGATTCAGCAAA-TGCTTC-G-GAGAGTTGCTTGGGGTTTTCTT-GGGTT-AG-GGTGGCTTGTTTT----TTATTTTAGATTTTGGATTCGCTCTGTTGGACAA----CCACATGGTTTGAAAGTACATGT
gi|11 : ccccTATTTCGAGCTTGC-ACTGCCTTC-GGATTT--T-CATAT----GA--------------------CT---------------------G---AACAATCCATA--AAAATAAATTGCTG------CT---------GTTCTGTTCCCTTT-TT------ATCCTAGCGAAG-TTTACT---CA--GATGATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGCTGAGAT--ACAGG-TA---CGTCGATTGGT---AGCTCT-GATA--TCAGCAAAGTGTTCTGG-GAGAGTTGCTTGGGGTTTTCTTGGGG-T-AGTGGTGGCTT-TTTTA---AAAATTTA-ATTT--GATTCGCTCTGTT-GACAA----CCACATGG-TTGAAAGTACATGT
gi|12 : atcattggaccCAAAACTTTAGAAAA-AATGT-GA---AGAGGAGG--AGGTA--CTATA-AA-TATCCA--CTCAAAGTGTACT-GTTT-TATG-TATT-CGAA-TGTAAGG-CCAGCCGGCGCTC-AT-AC-------AAG---CT-TA------TA-TG-ACACC--ATGGTC-AT-GGCA-A-TCAAATATA-A--AT---AATAATAAAAAAA-CAACAACA-A--AACAA-CAGCAACAAAGATG-C----A--TTAAATTTGAA-AATGAAATAG-AGCACT-TCAT-------TGTac
gi|13 : atttatattgaaaaagaaAATTGCAA---CAAAATGTTT-TTTCAACGGGGAAAAAA---T-G--CACC-----TTGATAT-TTCA-TAATCAAA-ATTCCG-AAGTGAAGAAAA-ATTCA-GAT--AGGGG--A--AAG-A--ATATA-AA-TATTCA--ATCAAAATTTAGT-AATT-C-TGAAATT-C-AA-AGTATGG-ACAGTCGgttattaccaaacatacccagtttctaaaatgta
gi|14 : ccaatagatatagaaACTAATTGCAA---CGAAATGTTC-CT-TAATGTA---ACAA---T-G--TACCTTCAGTTGGTAT-GTCA-TATTT-AA-CTTCTGTAAGTTCAGAAAA-ATACA-TA---AAGAAAAA--AAG-A--TTGTA-GA-TATTCAGGTTT----TTTAG--A--T-T-TGATATC-C--A-ATTATG
gi|15 : agagaaaattattgggaATTGCAATTACAAAACGTTT-GT-TAATTGG---AAAA---G-G--TACC-----CTAACAT-ATCT-TATTTAAA-CTTCCGAAAATTTAGAAAA-ATTCA-TATAGAGGAGGAATTAAG-A--CTATA-AA-TATTAA--GTCAAAATa
gi|16 : ttgaagaattattgggaatatAGTATGTAACG-----AAAG-GC-TGTA-TG-ATT-CCTTCAAAA-GTCCAAA-CT-atgatct
gi|17 : tcTTCCAAATAATTCTCATTCATGAGTGGACACCAGTGATGTAGCCTAAAGTTATAAACTC-AAAAATAATAGAAAGATCACCAACGCAT-gcataatcactaacaagtataatataaagtatatctgtaattatcttgattctttcaattttttttttttttggcaaaaattt
gi|18 : ACTAATTGCAA---CATAAGGTTT-CT-CAGCGGG---AAAA---T-G--TACC-----TTG
gi|19 : gccagtagaattagaaaattatcgggaA------ATAAGCAT--TG---------CCTCTAGA--CTCG-------CATA--TG---CTCTACGGGTACATTTC-AGC--ATA-AA---A----
gi|2 : AGTATGTAACG-----AAAA-GG-TGTA-T--ATTCC-TTCCAAA-GCCCAAA-TT-TGTT-ACATATTA--GGCCTAA------ATA-GCAT--TGGCTAAATTGCCTT--GA--CTCGA-----TCACACTTG---CTTTAC----AT---TTCAGC--A-A-AA---A----ATTC-GCCTATTT-CACCCAAGA-ATGATT--------------AATACATCT-----AGGTCA-TGAA----------TA-TCTT--ATTCATGTACGC--CTAA-ATTAGCCATAATTGTACACTTGTACTGTAATCTACA-TACAAACA-----CGATTTATT-C-ATG---T----ACGGGGCACCATACAGAT-CAAAATT---CAATAAATTGTGTAATGCGAATAGTCGCAAACCATTTGGAATTCATATCATTTGTTCTATTTTG-CTTTCTCAATA-TTCTCATTCATGAGTGGGCACCAGTGAGGCAACCTAAAGTTAAAAACTT-AAAAG----ANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACAA-TA--ATTATTTAGTTC-ATTG-------ATGTACCGTAGATAAAAAAAAT----TTGGC-TGACATTTCCATT-AACAGTATAAAAT
gi|2 : T---AGCTAGC-ACTGCCTTC-GGATTA--T-CATAT----GA--------------------CA-T-GCATGTACAT-ACGATTAATTGAACAATCCATA--AAAATATATTGCTG------CTGTTCTAGCTGTTCC-Tacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaatagctagcactgccttcggattatcatatgacatgcatgtacatacgattaattgaacaatccataaaaatatattgctgctgttctagctgttcctat
gi|3 : agtatgtaacgaaaaggtgtatattccttccaaagcccaaatttgttacatattaggcctaaatagcattggctaaattgccttgactcgatcacacttgctttacatttcagcaaaaaattcgcctatttcacccaagaatgattaatacatctaggtcatgaatatcttattcatgtacgcctaaattagccataattgtacacttgtactgtaatctacatacaaacacgatttattcatgtacggggcaccatacagatcaaaattcaataaattgtgtaatgcgaatagtcgcaaaccatttggaattcatatcatttgttctattttgctttctcaatattctcattcatgagtgggcaccagtgaggcaacctaaagttaaaaacttaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtacaataattatttagttcattgatgtaccgtagataaaaaaaatttggctgacatttccattaacagtataaaatacgaaaagtttttacatattgtggatttggttaatttaaaaaaggcgcaagaaaACTAATTGCAA---CAAAAGGTTTTCT-CAGCGG-----AAA---T-G--TAC------TTGGTAT-ATCAATATTTTAA-A--CCTAAAAGTTAGAAAA-ATCTATGA---AGGGG--A--AAG-A--C-ATC-AA-TTTTCA--CCCAA----TAGA-AAAT-T-TGACATT-CGAA-AGTATGA-CCAGCCGACGC-CCAT-ACACT----AAG---TA-TA------TACTG-ACATC--C-GGTT-AC-GACG-A-TC-----T--A--GC---AA--------GAA-TG----GACA--AACAA-T---------CATA-C----AAGTTAT---TATA-A---AAATAA-AACATT-TCAT---------TAC--TTAAAGTTTGTAA-G-----TAAA------CC-TG-GTTAACTCACAGATGTCAAAT-CTGA-TT---AT--TGGTGGCCGCATTCCCCATA-GCATGCCG---------CTTT--GAGTCTCAAAT---TCGCAC-TGTGACTTTATAGTCACTAATT-AGTGAGTA-CATTGA----ATT-----TTCAT-CGCCTATGA-ATGGTT--------------AATATATCC-----ATTT---TACA-ACA-------A-TC----ATCCATATATACAAATAT-AT-AGTTGTGATTTCACGCGTACGATGTAATAAACT-TTCA--CATTGATCGGTACTTTGCCA-GAGAT----ATGGCGCGCCATA-AGGT-TAAAATTCAACAATAAATT-TATATAGCGAat
gi|4 : ccagtaaaatagaaaattatcgggaCCTAAAGTTATAAACTC-AAAAAGAATAG-AAGATCACCAAGACATATAAGAGAATAAAC-AATAAATTTCATTTGA--TTGACCAGTTTCGACCGTCTGGCGTCGTTCATCCAGTTCAACTA--ATT-TTT-GTT-TATTGAGGTACAAT---C--------------AAAAAATCGGCTTGACATTGCCTTTACAC---ATGTAACCACATA-T---AATATGCAAAAGC------AATTTGCTACATATTGTGGA--------------------TT-TGG-------AT-A--ATTTA---AAAAACAGACA--GAAAGAAATTGC
gi|4 : AGACAGAAAGAAATTGCGTATT---AGCTTGCCACTGCCTTC-GGATTTA-T-CATAT-----A--------------------GT-A-G-------AT-A--ACTGA---AAC---CCATA--AAAATAAATTGCTG------CT-------CTGTTCC-TT---TTT-AT------ATCC-AGC-AAT-TTTAC----AATAGAT-ATGGCGTTTTGTATTAATTA---TTATGT-AAAGAGC-GAGAT--ACAGG-TA---CGTCGATTGGCA--AGCTCTTGATA--TCAGCAAAGTGTTCT-G-G-GAGTTGCTTGGG--TTTTTT-GGG-TTAG-TGTGGCTT-TTTTTTAAAAATTTTA-ATTTTGGATTCGCTCTGTT-GACAA----CCACATGGTTTGAAAGTACATGTgtattagcttgccactgccttcggatttatcatatagtagataactgaaacccataaaaataaattgctgctctgttcctttttatatccagcaattttacaatagatatggcgttttgtattaattattatgtaaagagcgagatacaggtacgtcgattggcaagctcttgatatcagcaaagtgttctgggagttgcttgggttttttgggttagtgtggcttttttttaaaaattttaattttggattcgctctgttgacaaccacatggtttgaaagtacatgt
gi|5 : cctaaagttataaactcaaaaagaatagaagatcaccaagacatataagagaataaacaataaatttcatttgattgaccagtttcgaccgtctggcgtcgttcatccagttcaactaatttttgtttattgaggtacaatcaaaaaatcggcttgacattgcctttacacatgtaaccacatataatatgcaaaagcaatttgctacatattgtggatttggataatttaaaaaacACTAATTGCAA---CAAAATGTTT-CT-AAACGGC---AATA---T-A--TACC-----TTGATAT-ATCA-AATTTAAA-TTACCAAAAGTTTAGAAAA-AATCACGA---AAAGG--A--AAA-A--CTACA-AAGCATTCA--TTCAAAATT--------------ACATT-CAAA-AGTATGG-CCAACCGGCGCTCCAA-GC-------AAG---TT-TA------AA-TG-ACAT---A-GACT-GC-GATA-A-TG-----TA-A--AC---AG--------CAA-CG----CA-A--AATGA-C---------GATG-C----A--TTACGCATGTG-AATAAAAAAAGATCACC-TCATTTATACATGTACCTTTCAAATATGTAACG-----AAGA-GG-TGTA-T--ATT-CCTTCTAAC-GCT-----CT-T-TT-TCATTGTA--GGCCTAA------ATA-GCAT--TG---------CCTT--GAATCTCAAATTTCCCACA--TG---CTTTACGGGTACATTTT-AAA--ATA-AA---ATTACATTTAACCTATAT-TGTCAACGA-ATGATT--------------GATA
gi|6 : ccagtagaaatagaacattttcgcaaGTATAG-CCAGCAGGCGCTCCTT-A---------AG---CT-TA------TA-GG-ACATC---------------G-A-TA-----TC-ACTAC---AA--------AA---T----CA-A--AATAG-A---------AATG-T----A--TTTTGCATG------AAAGTAA-ATCGCT-TCAT-------TA-ACCTTTCAAGTGTGTGATGAAAAAAAAA-AG-TGTG------TTCCTCCTAAC-GTCCAAA--T-C-TT-CAGTTATA--GGCCTAA------ACA-GCAT--TG---------CATT-------TTAG-----CAACA--TG---TT-------------TC-AGC--ATA-AA---A----AT----CCTCTAT-CACCCACAA-ATGATTTTGGCTATGCCATGAAAATATCTGTTACATGT---TGCA-TTACTT---TATTCTT--ATTTA-GTAATC--CAAT-GTCAGTCAAAATTGCACGCTTGCGTTGAAATTTACAGTTCA--CA-----ATATATTTT-CTATG---TATAAATAGTTCGTCTTGT-GATATAAAATT---CAATAAATTGTATAATGTG
gi|7 : ACTAATTGCAA---CAAGATGTTT-CT-CAACGG----AAAA---T-G--TACC-----TTGGTAT-ATCA-TATTTAAA-GTTCCAAAAGTTTAGAAAA-ATTCA-TA---GAGGGGAA--A-G-A--TTATA-AA-TATTGA--TTCAAAATTTACT-AATC-A-TGACATT-CAAA-AGTATGA-TCAGGCGGCGCTCCAT-AC-------AAG---AT-TA------TA-TG-GCATTAAA-AGTT-AC-GACG-A-TG-----TA-A--AC---AA--------AAA-CG----CA-A--AATAA-C---------GATG-C----A--TTACGCATGCA-AATGAAATAA-ATTACC-TCAT-------T-TACCTTTCAAGTAAGTAACG-----AAAA-GG-TATA-T--ATT-CCTTCCGAA-GTCCAAATCT-G-TT-ACAT--TT--AGCCTAA------ATA-GCAT--TG---------CCTT--GA--
gi|8 : cagtagaaatagaaacctttcgggaATTAATTGCAA---CAAAAGGTTT-CT-CAGCGGG---AAAA---T-G--TACC-----TTGGTAT-ATCA-TATTTAAACA--CCCAAAGTTTAGAAAA-ATCTATGA---AGGGG-----AAA-A--CCATA-AA-TTTTCA---CCAAAATATGAA-AAAT-T-TGACATT-CGAA-AGTATGA-CCAGCCGACGC-CCAT-ACTCTACGTAA-------TA------TA-TG--CATC--C-GGTT-AC-GACG-A-TC-----TA-A--A----GA--------AAA-GA----CA-GTCAATAATC---------AATG-TATCGA--TTATA-ATATA-AAT--AATGA-A-AATT-TCAT-------GATA-CTTTAAAG-ATGTAA
gi|9 : ggccagtagaaatagaaaattatcggaCTAATTGCAA---CAAAATGTTT-CT-CAACGAG---AAAA---TTG--TACC-----TTGGTATCATCA-TATT-AAA-ATTCCAAAAGTTTAGAAAACATCCAAGA---AGGG---A--AAG-G--TTATACAA-TATTCA--TTTAAAATTTAAT-AATA-T-GAGCATTTCAAA-AGTATGGGCCAGCCGGCGC--CATTACCTC----AAG---C-----------A-T---CAT---A-GGTTTACCGAAGCA-TG-----GA-A--GC---AA--------AAAGCG----CA-A--AATAA-C---------GATG-C----A--TTTCGCATCCA-AATGCAATAA-ATTACCTTCAT-------T-TACCTTTC-AGTATGTAACG-----AAAG-GC-TGTA-TG-ATT-CCTTCAAAA-GTCCAAattacaaacctgtgtatctacagaaatgtaattg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTAATGATGAAAGCGAAATGGACTGATAAGTGATTAGAA
Unaligned ( gi|21 ): GTGATGTAGACTATGTAGTTAAAACTATTGGC