lowQualScore : 111111111111111111111111111111111 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 444444444444444444444444444444444 22222 1111 22 55555555555555555555555555555555555555 111 22222 111 44444444 111111 22222 33333 3333333333333333333333333333333333333333333333333 1111 1 1 11 1 1 111 22222 666666666666666666666666666666666 11 99999999999999999999999999999999999999 2222222 1 1 7777777777777777777777777777777777777777777777 11 1 33 11
lowQualScore : 6 999999999999999999999999999999999 88 0 8 0 00000 8888 8 8 2 33 6 11111111111111111111111111111111111111 000 6 6 6 6 0 1 99 6 6 1 99 9999 6 6 88 5 88888 000 7 44444444 444444 8 11111 0 77777 8 6666666666666666666666666666666666666666666666666 77 7777 1 8 0 1 99 8 22 11 0 0 7 55 1 333 1 88888 0 5 444444444444444444444444444444444 8 3 8 2 11 3 99 0 11111111111111111111111111111111111111 0 2222222 3 0 5 0 2 2 3 9 0 3 4444444444444444444444444444444444444444444444 3 8 33 9 0 33 33 2 9
lowQualScore : . ................................. .. . . . ..... .... . . . .. . ...................................... ... . . . . . . .. . . . .. .... . . .. . ..... ... . ........ ...... . ..... . ..... . ................................................. .. .... . . . . .. . .. .. . . . .. . ... . ..... . . ................................. . . . . .. . .. . ...................................... . ....... . . . . . . . . . . .............................................. . . .. . . .. .. . .
lowQualScore : 0 777777777777777777777777777777777 33 8 0 8 00000 3333 0 0 5 22 7 00000000000000000000000000000000000000 888 7 7 7 0 8 0 22 7 7 0 22 3333 7 7 88 6 00000 888 3 88888888 777777 8 88888 8 22222 0 7777777777777777777777777777777777777777777777777 88 2222 8 0 0 0 00 0 22 00 0 0 0 88 2 888 2 00000 8 0 222222222222222222222222222222222 0 2 0 2 22 8 22 8 00000000000000000000000000000000000000 8 6666666 2 8 0 8 5 5 0 2 0 2 1111111111111111111111111111111111111111111111 5 8 88 0 0 00 00 5 8
consensus : CTCTCTTTTCAACAAACTTCGT------AA---AGCTCGTTTGTTTAGT------TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTAT-----------AATTACGAGG-------------TGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTG----GCC-CCGTGTTTACT---T----AGTGG--CA-NGCGCCTCGA---GAAAACTGTACG-ACA-TGGGACG-TCCCAATTGANTTT--TA---------------ATT---CGA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATAT-ACCGTAAGCGTA-TAG-CAATATTAAATCTATTATAATTTTA----TTTAGCCAG--------------CATA--T------------TTCA-ATATTCAGTCGGGTT-CGCAATTCA-NTTTTACTGATAAAC----GATC-GAGTT-AGTTC--CCGT-AAGTAAG----AGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATA-ATTC-GCAAA-----ATATA-----TAATA-------TAATCAA-----AATNAGCTAA--TTCT-TGAAC-TTTANGTGCAAATTTAA
Reference ( gi|1 ) : CTCTCTTTTCAACAAATTTCGT------AA---AGCT------------------TTCTTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCT---------------AA----GAAG-------------TGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATTGT-CTCCTAA-TTATCCGTACCT-----GCC-CCGTGTTTACTA-AT----AGTGG--CA-AGCGCCTCGG---GAAAACTG--C--ACA-TGGGACGGTCCCAATTGAGTTT--TA---------------ATT---CAA----TAGCCA-C--GACAGA-TAATCTTT-TTGCAATAT-ACCGTAAGTGTA-TAG-CAATATTAAATCTATTATAATTTT-----TTTAGCCAG--------------CATA--T------------TTCA-ATATTCAGTCGGGTT-CACAATTCA-CTTTTACTGATAAAC----GATC-GAGTT-AGTTC--CCGT-AA-TAAG----AGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATA-ATTTTGCAAA-----ATATA-----TAATA-------TAATCAA-----AATAAGCTAA--TTAT-TGAAT-TTTACGTGCAAATTTAA
gi|6 : CTCTCTTTTCAACAAACTTCGT------TA---AGCTCGTTTGTTTAGT------TTCCTTGTAAGAGT-TACACCCCTTGACATGTCTTGTA-TT-ATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCTTTATGAGAAGCGAATAATTATGAGG-------------TGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATAGT-CT
gi|14 : tttaacCTCTCTTTTCAACAAACTTCTT------AA---AGCTCGTTTGTTTAGTTTCTGTTTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TT
gi|13 : tttaacCTCTATTCTCAATAAACCTCGTTTGTTTAGTCCAGTT------------------TT--TTGT--GAGT-TATACCCCTTG-----TCTTATA--TTATATTGAA-CATC-GA
gi|8 : cctaat------------------TTTTTTGTAAGAGT-TACACACCTTG-----TCTTGTA-TT-ATATAGAA-CATC-GAATACCAAGGTATCACAAATCTT--------------AATTATGAGG-------------TGCTCA-----------------TC-TG-TGTTCGGGGTGTTAACACAACCTTTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATCGT-CTCCTAA-TTATCCGTACCT-----GCT-CTGTGTTTACT---T----AGTGG--C
gi|7 : tgtttcttaTTCGTAACAATATACACTTC--G-----CATTGCAATCTATATTGAAACATCCGAATAC-AGGATA--ACAAATCTTTATG----------AA----GAAGCGAATAATAGAGGTGCTCA--ACGTTCAAGCCATAGTCTTG-TGTTT-GGGTGTTAACTC-ACAATTGATCT--CTTGAA-TCCC--ACTCGT--CTAC-T--A-AACA--TA-TGTCCTCCTAA--TAT-CGTACCTG----GCC-TCGTG-TTACT---T----AGTG
gi|12 : tgttttattgtgcgATAATGAA---TC----TACCAAGGTATCACAAATCTTTACCAGAAGTGAATAATTACGAGG-------------TGTCCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTG
gi|2 : ctctttggcatggtgatgaacaatgtgAAT-T---------------AT----GAGG-------------TGCCTATAGTGTCCAAGCCATA-TC-TGACGTTCGGGGTGTTAGC--AACTCTTGTTGT--CATG-A-TCACTGACGCGT--TTACCT--A-AACGATTATTGT-CTCCTAA-TTA-CCACACCT-----GACATCGTGTCTACT---T----AGTGG--CACAG-GCCGCAA---GAAAACTG--TGAACA-TGG-ACAATCC------ACTTT--TA---------------A-------A-----AGTCA-C--GACTGC-TAATCTTT-TCGCAATAT-AC-----GGGTA-TAA-CAATATTGAA--TATT-TCACTTTAAAACTTTAGCCAGTAATATACCAAAGACATA--T------------ATTACATATTCAGCCGAGTT-CTGAATTCA-ATTTTAC----GAAC---------------ACTTC--CAGTAAA-TAA-----AGTTGT-T----GAACAAATTACCGTTGTTCGCGGCGTGGGAATATATC------------ATATA-----TTATA-------TATTC
gi|10 : taatgagtaattagatAAT-T---------------AT----GAGG-------------TGCTCA--ACATCCAAGCCATA-TC-TG-TATTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCTCGACTCGT--CTAC-T--A-AACAATTTTTGT-CTCCTAA-TTATCCGTACCT-----GCT-CCGTGTTTACT---T----AGTGG--CA-
gi|11 : aaggtatcacaaatctttatgagaagcgaacTTGATTTTTCTTG-AAGCACCGGCTTGTAACTAC-CTCACAACGATTATTGT-CCCCTAAGTTAGCCTTACCTGGGAAGTA-ACGGG---AATA-ATCGTGAGTGG--TT-AGCGCCTC-----GAAAACTGTAC--ACA-TGGGAC--TCACAGTT-ACTTT--Tc
gi|5 : TGTTAACTTTAT----AGTTG--CA-TGAGCCCTGA---GAAA-CCG--CGTACAATGGGACA-TGC----TGAATTTCATA---------------ATTAATCAAGTTTTAGT-A-G--AGTTGA-GAAT-TAT-TTGCAAAATCATCTT---TTTAACAG-CTATATCAAATGTGCTA-GATGGCA----CTTGG---G--------------AATA--T------------TTCA-ATATTAAATCAGGTT-CACAATTCA-ATTTGACCGACAAAC----CAT---A--T-AGTT-----GT-AT-AAAGAATAAGTTCTGT----AAATAAATTAC
gi|3 : T----AGTGGTTCT-CGCGCCTCGAAAAGAGAACTGTAC--ACA-TGGGACG----CAAGTTACTTT--TATGCAAACTAATCGAAGTT---CGT----TAGATA-CATGACTGACTAATCTTTAGTGCAATAT-ACCGTAAGCATG-TAGACAATATTAAATCTAATATAAATTC-----TATAGC-AG--------------CACACAT------------TTCA-ATATTCAGTTGGATT-TGCAATTTA-CTTTTTCTG--AAACAATAGATTAGAGTTCAGTTCCGCCTT-AG-T-AG----AG-TGT-A----TAA-AAA-TAC---AATTTTTG----------A-ATTC----AG-----ATACA------AATC-------T-ATC-A-----AATCAG---A--TTCTCTGAACATTTATATGCAATTTTA
gi|4 : CTCGG---GAAAACTG--C--ACA-TGGGAC-----CAATTGAGTTT--TA---------------ATT---CA-----TAGCCAAC--GACAGA-TAAT---T-TTGCAACTT-ACCGTAAGTGTA-TAG-CAATAT-AAATCTATTAAAATTTT-----TT-AGCCAG--------------CATA--T------------TTCA-ATATTCA-TCGGGTTTCACAATTCAACTTTTA-TGATAAAC----GATC-GAGTT-AGTTC--C-GT-AAGTAAG----AGTTGT-TTTAAAAACAAATTAC-GTAGTTCTCGGCGTGTGA-TA-ATTT-GCAAATAATAATATACATGTTAATAGATAAAATAATAAA-----AATAAGCTAA--TTCT-TGAA--TTTACGT-CAA--TTAA
gi|15 : gaatcgATCGAGTTC--TG---------------AT------------AGCTA-T--GACTGA-TAATCTTT-ATGCAATAT-ACCGTt
gi|9 : T-----TTTAGCCAG--------------TATA--TGTAATTGAATATTTCA-CTATTCAGTCGGGTT-TGCAATTCA-TCTTTACTGATA----------C---------CTC--CCGT-AAGTAA-----AGTCGT-T----GAACAAATCATCGCAGTTCTCGGCTTGTGAATA-A-TTTGTAAA-----ATAAA-----TAATG-------TA--CAAATATGAATTAGATAAATTTAT-TTAA--ATTA---GCAAATT
gi|16 : taA-------TTATCAA-----AATAAGCTAA--TTCT-TGAAC-TTTAAGTGTAAATTTAAct
Alignments
lowQualScore : 333333333333 11111 1 1 9999999999999999999999999 22222 111 11111 222 44444 66666666666666666666666666666 1111 1111 111 333333 1 55555555555555 3333333333333333 11 111111 222222222 222222 2222222 22222 11 11
lowQualScore : 3 2 3 3 5 111111111111 44 6 66666 6 0 6 6 0 9999999999999999999999999 77 9 888 5 5 5 3 77 5 5 77 5 77 5 1 5 6 3 99999 3 1 66 777 77 1 22222 6 888 2 00000 6 1 99 11111111111111111111111111111 3 2222 6 6 6 66 1 7777 8 3 0 444 666666 0 88888888888888 6 1 6 2 6 1 1 44 8888888888888888 2 6 3 66 666666 1 1 0 5 8 999999999 000000 1111111 77 0 00000 1 5 5 8 0 66 1 11 6
lowQualScore : . . . . . ............ .. . ..... . . . . . ......................... .. . ... . . . . .. . . .. . .. . . . . . ..... . . .. ... .. . ..... . ... . ..... . . .. ............................. . .... . . . .. . .... . . . ... ...... . .............. . . . . . . . .. ................ . . . .. ...... . . . . . ......... ...... ....... .. . ..... . . . . . .. . .. .
lowQualScore : 2 5 5 2 0 000000000000 66 7 77777 7 6 7 7 8 7777777777777777777777777 99 9 000 7 7 7 5 99 7 7 99 7 99 7 4 7 7 2 22222 7 7 99 555 99 0 77777 7 777 5 77777 7 0 22 77777777777777777777777777777 7 7777 7 7 7 22 4 0000 0 8 8 888 222222 0 00000000000000 7 0 7 2 7 0 7 77 3333333333333333 5 7 7 00 222222 0 0 6 6 0 666666666 888888 7777777 00 8 00000 0 0 0 0 8 22 0 00 0
consensus : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-----------TGA--A------AAT--TATGAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTG----GCNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTAC-ACATGGGAC-GT--CAATTGANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCCAG-A------------CATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAA-----AATAAGCTAATTCT-TGAAC-TTTACGT--GCAAATTTAA
Reference ( family-9705 ) : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-----------T-----------AAT--TACGAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTG----GCCCCGTGTTTACT--T---AGTGG--CANGCGCCTCGA---GAAAAC-TGTACGACATGGGAC-GTCCCAATTGANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCCAG--------------CATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ANTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAA-----AATNAGCTAATTCT-TGAAC-TTTANGT--GCAAATTTAA
gi|1 : CTCTCTTTTCAACAAATTTCGTAAAGC------------------T----TTCTTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTAT-ACAAATC---------------T-----------AA------GAAGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATTGT-CTCCTAA-TTATCCGTACCT-----GCCCCGTGTTTACTAAT---AGTGG--CAAGCGCCTCGG---GAAAAC-TGC---ACATGGGACGGTCCCAATTGAGTTT--TA---------------ATT---C-AA----TAGCCA-C--GACAGA-TAATCTTT-TTGCAATATACCGTAAGTGT----ATAG-CAATATTAAATCTATTAT-AATTTT-----TTTAGCCAG--------------CATATTTCA-ATATTCAGTCGGG-TTCACAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAA-TAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATTTTGCAA-----AATATA-----TAAT-------ATAATCAA-----AATAAGCTAATTAT-TGAAT-TTTACGT--GCAAATTTAA
gi|10 : AAGGTATCACAAATCTTTA-----------TGAGAAGCGAACAAT--TATGAGGTGCTCA--ACATCCAAGCCATA-TC-TG-TATTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCTCGACTCGT--CTAC-T--A-AACAATTTTTGT-CTCCTAA-TTATCCGTACCT-----GCTCCGTGTTTACT--T---AGTGG--CA
gi|11 : TTGATTTTTCTTG-AAGCACCGGCTTGTAACTAC-CTCACAACGATTATTGT-CCCCTAAGTTAGCCTTACCTGGGAAGTAACGGGAATAAT--CGTGAGTGG--TTAGCGCCTC-----GAAAAC-TGTAC-ACATGGGAC--TCACAGTT-ACTTT--Tc
gi|12 : ATAATGAA---TC----TACCAAGGTATCACAAATCTTTACCAGAAGTGAAT-----------AAT--TACGAGGTGTCCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTG
gi|13 : ctctttggcatggtgatgaacaatgtgCTCTATTCTCAATAAAC---------CTCGTTTGTTTA------GTCCAGTTTTTTGT--GAGT-TATACCCCTTG-----TCTTATA--TTATATTGAA-CATC-GA
gi|14 : cctaatCTCTCTTTTCAACAAACTTCTTAAAGCTCGTTTGTTTAGTTTCTGT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TT
gi|15 : tttaacA---------------GTT---CTGA----TAGCTA-T--GACTGA-TAATCTTT-ATGCAATATACCGT
gi|16 : atcg-------ATTATCAA-----AATAAGCTAATTCT-TGAAC-TTTAAGT--GTAAATTTAA
gi|2 : A-----------T-----------AAT--TATGAGGTGCCTATAGTGTCCAAGCCATA-TC-TGACGTTCGGGGTGTTAGC--AACTCTTGTTGT--CATG-A-TCACTGACGCGT--TTACCT--A-AACGATTATTGT-CTCCTAA-TTA-CCACACCTG----ACATCGTGTCTACT--T---AGTGG--CACAGGCCGCAA---GAAAAC-TGTG-AACATGGA-------CAATCCACTTT--TA---------------A--------A-----AGTCA-C--GACTGC-TAATCTTT-TCGCAATATAC-----GGGT----ATAA-CAATATTGAA--TATT-T-CACTTTAAAACTTTAGCCAGTAATATACCAAAGACATATATTACATATTCAGCCGAG-TTCTGAATTC-AATTTTAC----GAAC---------------ACTTCC-AGTAAATAA--AGTTGT-T----GAACAAATTACCGTTGTTCGCGGCGTGGGAATAT-ATC----------ATATA-----TTAT-------ATATTCtg
gi|3 : taatgagtaattag--T---AGTGGTTCTCGCGCCTCGAAAAGAGAAC-TGTAC-ACATGGGAC-G---CAAGTTACTTT--TATGCAAACTAATCGAAGTT---C-GT----TAGATA-CATGACTGACTAATCTTTAGTGCAATATACCGTAAGCAT----GTAGACAATATTAAATCTAATATAAATTCTA------TAG-CAGCA------------CACATTTCA-ATATTCAGTTGGA-TTTGCAATTT-ACTTTTTCTG--AAACAATAGATTAGAGTTCAGTTCCGCCTTAGT-A-GAG-TGT-A----TAA-AAA-TAC---AATTTTTG----------AA-TTC---A-----GATACA------AAT-------CT-ATC-A-----AATCAG---ATTCTCTGAACATTTATAT--GCAATTTTA
gi|4 : CTCGG---GAAAAC-TGCAC---ATGGGAC-----CAATTGAGTTT--TA---------------ATT---C--A----TAGCCAAC--GACAGA-TAAT---T-TTGCAACTTACCGTAAGTGT----ATAG-CAATAT-AAATCTATTAA-AATTTT------TTAGCCAG--------------CATATTTCA-ATATTCA-TCGGGTTTCACAATTCAACTTTTA-TGATAAAC----GATC-GAGTT-AGTT-C-CGTAAGTAA-GAGTTGT-TTTAAAAACAAATTA-CGTAGTTCTCGGCGTGTG-ATAA-TTTGCAAATAATAATATACATGTTAATAGATAAAATAATAAA-----AATAAGCTAATTCT-TGAA--TTTACGT---CAA--TTAA
gi|5 : gaatcgTGTTAACT--TTATAGTTG--CATGAGCCCTGA---GAAACCGCGTACAA--TGGGAC-ATGC----TGAATTTCATA---------------ATTAATC-AAGTTTTAGT-A-G--AGTTGA-GAAT-TAT-TTGCAAAAT--CAT---CTTTTTAACAG-CTATATCAAATGTGCTA--GATGGCA----CTTGG---G--------------AATATTTCA-ATATTAAATCAGG-TTCACAATTC-AATTTGACCGACAAAC----CATA-TAGTT--GT-----ATAAAGAATAAGTTCTGT----AAATAAATTACt
gi|6 : CTCTCTTTTCAACAAACTTCGTTAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTGACATGTCTTGTA-TT-ATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCTTTA-----------TGAGAAGCGAATAAT--TATGAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATAGT-CT
gi|7 : tttaacTCGTAACAATATACACTTC--G-----CATTGCAATCTATATTGAAACATCCGAATAC--AGG-ATAACAAATCTTTA-----------TGAAGAAGCG--AATAATA-GAGGTGCTCA--ACGTTCAAGCCATAGTCTTG-TGTTT-GGGTGTTAACTC-ACAATTGATCT--CTTGAA-TCCC--ACTCGT--CTAC-T--A-AACA--TA-TGTCCTCCTAA--TAT-CGTACCTG----GCCTCGTG-TTACT--T---AGTG
gi|8 : tgttttattgtgcgtGTTT-CTTA------TT----TT--TTGTAAGAGT-TACACACCTTG-----TCTTGTA-TT-ATATAGAA-CATC-GAATACCAAGGTATCACAAATCTT-------------------------AAT--TATGAGGTGCTCA-----------------TC-TG-TGTTCGGGGTGTTAACACAACCTTTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATCGT-CTCCTAA-TTATCCGTACCT-----GCTCTGTGTTTACT--T---AGTGG--C
gi|9 : tATATTTCA-CTATTCAGTCGGG-TTTGCAATTC-ATCTTTACTGATA----------C---------CTCC-CGTAAGTAA--AGTCGT-T----GAACAAATCATCGCAGTTCTCGGCTTGTGAATAA-TTTGTAA-----AATAAA-----TAAT-------GTA--CAAATATGAATTAGATAAAT-T-TA----TTTAAATTAGCAAATT
Alignments
lowQualScore : 333333333333 11111 1 1 777777777777777777777777777 22222 111 11111 33333 66666666666666666666666666666 1111 1111 111 66666666666666666666666666666 3333333333333333 11 111111 222222222 222222 2222222 22222 11 22
lowQualScore : 3 2 3 3 5 111111111111 44 6 66666 6 0 6 6 0 1 333333333333333333333333333 5 888 5 5 5 3 77 5 5 77 5 77 5 1 5 6 3 99999 1 1 66 777 77 1 22222 6 88 44444 6 1 2 1 99 11111111111111111111111111111 3 2222 6 6 6 66 1 7777 8 3 0 444 00000000000000000000000000000 6 1 6 2 6 1 1 44 8888888888888888 2 6 3 66 666666 1 1 0 5 8 999999999 000000 1111111 77 0 8 3 00000 11 8 11 8 6
lowQualScore : . . . . . ............ .. . ..... . . . . . . ........................... . ... . . . . .. . . .. . .. . . . . . ..... . . .. ... .. . ..... . .. ..... . . . . .. ............................. . .... . . . .. . .... . . . ... ............................. . . . . . . . .. ................ . . . .. ...... . . . . . ......... ...... ....... .. . . . ..... .. . .. . .
lowQualScore : 2 5 5 2 0 000000000000 66 7 77777 7 6 7 7 8 4 444444444444444444444444444 7 000 7 7 7 5 99 7 7 99 7 99 7 4 7 7 2 22222 0 7 99 555 99 0 77777 7 88 88888 7 5 5 0 22 77777777777777777777777777777 7 7777 7 7 7 22 4 0000 0 8 8 888 44444444444444444444444444444 7 0 7 2 7 0 7 77 3333333333333333 5 7 7 00 222222 0 0 6 6 0 666666666 888888 7777777 00 8 0 2 00000 00 0 22 2 0
consensus : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTG----GCNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTNANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
Reference ( family-9705 ) : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTG----GCNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTGANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
gi|1 : CTCTCTTTTCAACAAATTTCGTAAAGC------------------T----TTCTTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCT------------AA---------------------GAAGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATTGT-CTCCTAA-TTATCCGTACCT-----GCCCCGTGTTTACTAAT---AGTGG--CAAGCGCCTCGG---GAAAAC-TG--CACATGGGACGGTCCCA-ATTGAGTTT--TA---------------ATT---C-AA----TAGCCA-C--GACAGA-TAATCTTT-TTGCAATATACCGTAAGTGT----ATAG-CAATATTAAATCTATTAT-AATTTT-----TTTAGCC-------------AG--CATATTTCA-ATATTCAGTCGGG-TTCACAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAA-TAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATTTTGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--AT-TGAAT-TTTACGTGCAAATTTAA
gi|10 : AAGGTATCACAAATCTTTA-------TGAG------AAGCGAACAATTAT-GAGGTGCTCA--ACATCCAAGCCATA-TC-TG-TATTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCTCGACTCGT--CTAC-T--A-AACAATTTTTGT-CTCCTAA-TTATCCGTACCT-----GCTCCGTGTTTACT--T---AGTGG--CAC
gi|11 : TTGATTTTTCTTG-AAGCACCGGCTTGTAACTAC-CTCACAACGATTATTGT-CCCCTAAGTTAGCCTTACCTGGGAAGTAACGGGAATAAT--CGTGAGTGG--TTAGCGCCTC-----GAAAAC-TGTACACATGGGAC----TCACAGTTACTTT--T
gi|12 : ATAATGAA---TC----TACCAAGGTATCACAAATCTTTACCAGAAGTGAAT-----AA--------TTAC-GAGGTGTCCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTG
gi|13 : ctctttggcatggtgatgaacaatgtgCTCTATTCTCAATAAAC---------CTCGTTTGTTTA------GTCCAGTTTTTTGT--GAGT-TATACCCCTTG-----TCTTATA--TTATATTGAA-CATC-GA
gi|14 : cctaatCTCTCTTTTCAACAAACTTCTTAAAGCTCGTTTGTTTAGTTTCTGT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TT
gi|15 : tttaacA---------------GTT---CTGA----TAGCTA-T--GACTGA-TAATCTTT-ATGCAATATACCGT
gi|16 : atcg-------ATTATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTAAGTGTAAATTTAA
gi|2 : TTA--------GAT------AA--------TTAT-GAGGTGCCTATAGTGTCCAAGCCATA-TC-TGACGTTCGGGGTGTTAGC--AACTCTTGTTGT--CATG-A-TCACTGACGCGT--TTACCT--A-AACGATTATTGT-CTCCTAA-TTA-CCACACCTG----ACATCGTGTCTACT--T---AGTGG--CACAGGCCGCAA---GAAAAC-TGTGAACATGGA-------CA-ATCCACTTT--TA---------------A--------A-----AGTCA-C--GACTGC-TAATCTTT-TCGCAATATAC-----GGGT----ATAA-CAATATTGAA--TATT-T-CACTTTAAAACTTTAGCCAGTAATATACCAAAG-ACATATATTACATATTCAGCCGAG-TTCTGAATTC-AATTTTAC----GAAC---------------ACTTCC-AGTAAATAA--AGTTGT-T----GAACAAATTACCGTTGTTCGCGGCGTGGGAATAT-ATC----------ATATA-----TTAT-------ATATTCtg
gi|3 : taatgagtaa--T---AGTGGTTCTCGCGCCTCGAAAAGAGAAC-TGTACACATGGGACG----CA-AGTTACTTT--TATGCAAACTAATCGAAGTT---C-GT----TAGATA-CATGACTGACTAATCTTTAGTGCAATATACCGTAAGCAT----GTAGACAATATTAAATCTAATATAAATTCTA------TAG-C-------------AGCACACATTTCA-ATATTCAGTTGGA-TTTGCAATTT-ACTTTTTCTG--AAACAATAGATTAGAGTTCAGTTCCGCCTTAGT-A-GAG-TGT-A----TAA-AAA-TAC---AATTTTTG----------AA-TTC---A-----GATACA------AAT-------CT-ATC-AA-ATCAG--------ATT--CTCTGAACATTTATATGCAATTTTA
gi|4 : CTCGG---GAAAAC-TG--CACATGGGAC-----CA-ATTGAGTTT--TA---------------ATT---C--A----TAGCCAAC--GACAGA-TAAT---T-TTGCAACTTACCGTAAGTGT----ATAG-CAATAT-AAATCTATTAA-AATTTT------TTAGCC-------------AG--CATATTTCA-ATATTCA-TCGGGTTTCACAATTCAACTTTTA-TGATAAAC----GATC-GAGTT-AGTT-C-CGTAAGTAA-GAGTTGT-TTTAAAAACAAATTA-CGTAGTTCTCGGCGTGTG-ATAA-TTTGCAAATAATAATATACATGTTAATAGATAAAATAATAAAA-ATAAGCT-----AATT--CT-TGAA--TTTACGT-CAA--TTAA
gi|5 : gaatcgTGTTAACT--TTATAGTTG--CATGAGCCCTGA---GAAACCGCGTACA-ATGGGACA---T---GCTGAATTTCATA---------------ATTAATC-AAGTTTTAGT-A-G--AGTTGA-GAAT-TAT-TTGCAAAAT--CAT---CTTTTTAACAG-CTATATCAAATGTGCTA--GATGGCA----CTTGG----------------G-A-ATATTTCA-ATATTAAATCAGG-TTCACAATTC-AATTTGACCGACAAAC----CATA-TAGTT--GT-----ATAAAGAATAAGTTCTGT----AAATAAATTACt
gi|6 : CTCTCTTTTCAACAAACTTCGTTAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTGACATGTCTTGTA-TT-ATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCTTTA-------TGAG------AAGCGAATAATTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATAGT-CT
gi|7 : tttaacTCGTAACAATATACACTTC--G-----CATTGCAATCTATATTGAAACATCCGAATAC--AGG-ATAACAAATCTTTA-------TGAAGAAGCGAA--------TAATAGAGGTGCTCA--ACGTTCAAGCCATAGTCTTG-TGTTT-GGGTGTTAACTC-ACAATTGATCT--CTTGAA-TCCC--ACTCGT--CTAC-T--A-AACA--TA-TGTCCTCCTAA--TAT-CGTACCTG----GCCTCGTG-TTACT--T---AGTG
gi|8 : tgttttattgtgcgtGTTT-CTTA------TT----TT--TTGTAAGAGT-TACACACCTTG-----TCTTGTA-TT-ATATAGAA-CATC-GAATACCAAGGTATCACAAATCTT-------------------AA--------TTAT-GAGGTGCTCA-----------------TC-TG-TGTTCGGGGTGTTAACACAACCTTTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATCGT-CTCCTAA-TTATCCGTACCT-----GCTCTGTGTTTACT--T---AGTGG--C
gi|9 : tATATTTCA-CTATTCAGTCGGG-TTTGCAATTC-ATCTTTACTGATA----------C---------CTCC-CGTAAGTAA--AGTCGT-T----GAACAAATCATCGCAGTTCTCGGCTTGTGAATAA-TTTGTAA-----AATAAA-----TAAT-------GTA--CAAATATGAATTAGATAAATTTATT-TAAA---TTA---GCAAATT
Alignments
lowQualScore : 333333333333 11111 1 1 777777777777777777777777777 222222 111 111 33333 66666666666666666666666666666 1111 1111 111 66666666666666666666666666666 3333333333333333 11 111111 222222222 222222 2222222 22222 11 22
lowQualScore : 3 2 3 3 5 111111111111 44 6 66666 6 0 6 6 0 1 333333333333333333333333333 5 888 5 5 5 3 77 5 5 77 5 77 5 1 5 6 3 111111 1 1 66 777 77 1 111 6 88 44444 6 1 1 1 99 11111111111111111111111111111 3 2222 6 6 6 66 1 7777 8 3 0 444 00000000000000000000000000000 6 1 6 2 6 1 1 44 8888888888888888 2 6 3 66 666666 1 1 0 5 8 999999999 000000 1111111 77 0 8 3 00000 11 8 11 8 6
lowQualScore : . . . . . ............ .. . ..... . . . . . . ........................... . ... . . . . .. . . .. . .. . . . . . ...... . . .. ... .. . ... . .. ..... . . . . .. ............................. . .... . . . .. . .... . . . ... ............................. . . . . . . . .. ................ . . . .. ...... . . . . . ......... ...... ....... .. . . . ..... .. . .. . .
lowQualScore : 2 5 5 2 0 000000000000 66 7 77777 7 6 7 7 8 4 444444444444444444444444444 7 000 7 7 7 5 99 7 7 99 7 99 7 4 7 7 2 888888 0 7 99 555 99 0 777 7 88 88888 7 5 0 0 22 77777777777777777777777777777 7 7777 7 7 7 22 4 0000 0 8 8 888 44444444444444444444444444444 7 0 7 2 7 0 7 77 3333333333333333 5 7 7 00 222222 0 0 6 6 0 666666666 888888 7777777 00 8 0 2 00000 00 0 22 2 0
consensus : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTNANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
Reference ( family-9705 ) : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTNANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
gi|1 : CTCTCTTTTCAACAAATTTCGTAAAGC------------------T----TTCTTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCT------------AA---------------------GAAGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATTGT-CTCCTAA-TTATCCGTACCT-G----CCCCGTGTTTACTAAT---AGTGG--CAAGCGCCTCGG---GAAAAC-TG--CACATGGGACGGTCCCA-ATTGAGTTT--TA---------------ATT---C-AA----TAGCCA-C--GACAGA-TAATCTTT-TTGCAATATACCGTAAGTGT----ATAG-CAATATTAAATCTATTAT-AATTTT-----TTTAGCC-------------AG--CATATTTCA-ATATTCAGTCGGG-TTCACAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAA-TAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATTTTGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--AT-TGAAT-TTTACGTGCAAATTTAA
gi|10 : AAGGTATCACAAATCTTTA-------TGAG------AAGCGAACAATTAT-GAGGTGCTCA--ACATCCAAGCCATA-TC-TG-TATTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCTCGACTCGT--CTAC-T--A-AACAATTTTTGT-CTCCTAA-TTATCCGTACCT-G----CTCCGTGTTTACT--T---AGTGG--CAC
gi|11 : TTGATTTTTCTTG-AAGCACCGGCTTGTAACTAC-CTCACAACGATTATTGT-CCCCTAAGTTAGCCTTACCTGGGAAGTAACGGGAATAAT--CGTGAGTGG--TTAGCGCCTCGA-----AAAC-TGTACACATGGGAC----TCACAGTTACTTT--T
gi|12 : ATAATGAA---TC----TACCAAGGTATCACAAATCTTTACCAGAAGTGAAT-----AA--------TTAC-GAGGTGTCCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTG
gi|13 : ctctttggcatggtgatgaacaatgtgCTCTATTCTCAATAAAC---------CTCGTTTGTTTA------GTCCAGTTTTTTGT--GAGT-TATACCCCTTG-----TCTTATA--TTATATTGAA-CATC-GA
gi|14 : cctaatCTCTCTTTTCAACAAACTTCTTAAAGCTCGTTTGTTTAGTTTCTGT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TT
gi|15 : tttaacA---------------GTT---CTGA----TAGCTA-T--GACTGA-TAATCTTT-ATGCAATATACCGT
gi|16 : atcg-------ATTATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTAAGTGTAAATTTAA
gi|2 : TTA--------GAT------AA--------TTAT-GAGGTGCCTATAGTGTCCAAGCCATA-TC-TGACGTTCGGGGTGTTAGC--AACTCTTGTTGT--CATG-A-TCACTGACGCGT--TTACCT--A-AACGATTATTGT-CTCCTAA-TTA-CCACACCTGA----CATCGTGTCTACT--T---AGTGG--CACAGGCCGCAA---GAAAAC-TGTGAACATGGA-------CA-ATCCACTTT--TA---------------A--------A-----AGTCA-C--GACTGC-TAATCTTT-TCGCAATATAC-----GGGT----ATAA-CAATATTGAA--TATT-T-CACTTTAAAACTTTAGCCAGTAATATACCAAAG-ACATATATTACATATTCAGCCGAG-TTCTGAATTC-AATTTTAC----GAAC---------------ACTTCC-AGTAAATAA--AGTTGT-T----GAACAAATTACCGTTGTTCGCGGCGTGGGAATAT-ATC----------ATATA-----TTAT-------ATATTCtg
gi|3 : taatgagtaa--T---AGTGGTTCTCGCGCCTCGAAAAGAGAAC-TGTACACATGGGACG----CA-AGTTACTTT--TATGCAAACTAATCGAAGTT---C-GT----TAGATA-CATGACTGACTAATCTTTAGTGCAATATACCGTAAGCAT----GTAGACAATATTAAATCTAATATAAATTCTA------TAG-C-------------AGCACACATTTCA-ATATTCAGTTGGA-TTTGCAATTT-ACTTTTTCTG--AAACAATAGATTAGAGTTCAGTTCCGCCTTAGT-A-GAG-TGT-A----TAA-AAA-TAC---AATTTTTG----------AA-TTC---A-----GATACA------AAT-------CT-ATC-AA-ATCAG--------ATT--CTCTGAACATTTATATGCAATTTTA
gi|4 : CTCGG---GAAAAC-TG--CACATGGGAC-----CA-ATTGAGTTT--TA---------------ATT---C--A----TAGCCAAC--GACAGA-TAAT---T-TTGCAACTTACCGTAAGTGT----ATAG-CAATAT-AAATCTATTAA-AATTTT------TTAGCC-------------AG--CATATTTCA-ATATTCA-TCGGGTTTCACAATTCAACTTTTA-TGATAAAC----GATC-GAGTT-AGTT-C-CGTAAGTAA-GAGTTGT-TTTAAAAACAAATTA-CGTAGTTCTCGGCGTGTG-ATAA-TTTGCAAATAATAATATACATGTTAATAGATAAAATAATAAAA-ATAAGCT-----AATT--CT-TGAA--TTTACGT-CAA--TTAA
gi|5 : gaatcgTGTTAACT--TTATAGTTG--CATGAGCCCTGA---GAAACCGCGTACA-ATGGGACA---T---GCTGAATTTCATA---------------ATTAATC-AAGTTTTAGT-A-G--AGTTGA-GAAT-TAT-TTGCAAAAT--CAT---CTTTTTAACAG-CTATATCAAATGTGCTA--GATGGCA----CTTGG----------------G-A-ATATTTCA-ATATTAAATCAGG-TTCACAATTC-AATTTGACCGACAAAC----CATA-TAGTT--GT-----ATAAAGAATAAGTTCTGT----AAATAAATTACt
gi|6 : CTCTCTTTTCAACAAACTTCGTTAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTGACATGTCTTGTA-TT-ATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCTTTA-------TGAG------AAGCGAATAATTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATAGT-CT
gi|7 : tttaacTCGTAACAATATACACTTC--G-----CATTGCAATCTATATTGAAACATCCGAATAC--AGG-ATAACAAATCTTTA-------TGAAGAAGCGAA--------TAATAGAGGTGCTCA--ACGTTCAAGCCATAGTCTTG-TGTTT-GGGTGTTAACTC-ACAATTGATCT--CTTGAA-TCCC--ACTCGT--CTAC-T--A-AACA--TA-TGTCCTCCTAA--TAT-CGTACCTGG----CCTCGTG-TTACT--T---AGTG
gi|8 : tgttttattgtgcgtGTTT-CTTA------TT----TT--TTGTAAGAGT-TACACACCTTG-----TCTTGTA-TT-ATATAGAA-CATC-GAATACCAAGGTATCACAAATCTT-------------------AA--------TTAT-GAGGTGCTCA-----------------TC-TG-TGTTCGGGGTGTTAACACAACCTTTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATCGT-CTCCTAA-TTATCCGTACCT-G----CTCTGTGTTTACT--T---AGTGG--C
gi|9 : tATATTTCA-CTATTCAGTCGGG-TTTGCAATTC-ATCTTTACTGATA----------C---------CTCC-CGTAAGTAA--AGTCGT-T----GAACAAATCATCGCAGTTCTCGGCTTGTGAATAA-TTTGTAA-----AATAAA-----TAAT-------GTA--CAAATATGAATTAGATAAATTTATT-TAAA---TTA---GCAAATT
Alignments
lowQualScore : 333333333333 11111 1 1 777777777777777777777777777 222222 111 111 33333 66666666666666666666666666666 1111 1111 111 66666666666666666666666666666 3333333333333333 11 111111 222222222 222222 2222222 22222 11 22
lowQualScore : 3 2 3 3 5 111111111111 44 6 66666 6 0 6 6 0 1 333333333333333333333333333 5 888 5 5 5 3 77 5 5 77 5 77 5 1 5 6 3 111111 1 1 66 777 77 1 111 6 88 44444 6 1 1 1 99 11111111111111111111111111111 3 2222 6 6 6 66 1 7777 8 3 0 444 00000000000000000000000000000 6 1 6 2 6 1 1 44 8888888888888888 2 6 3 66 666666 1 1 0 5 8 999999999 000000 1111111 77 0 8 3 00000 11 8 11 8 6
lowQualScore : . . . . . ............ .. . ..... . . . . . . ........................... . ... . . . . .. . . .. . .. . . . . . ...... . . .. ... .. . ... . .. ..... . . . . .. ............................. . .... . . . .. . .... . . . ... ............................. . . . . . . . .. ................ . . . .. ...... . . . . . ......... ...... ....... .. . . . ..... .. . .. . .
lowQualScore : 2 5 5 2 0 000000000000 66 7 77777 7 6 7 7 8 4 444444444444444444444444444 7 000 7 7 7 5 99 7 7 99 7 99 7 4 7 7 2 888888 0 7 99 555 99 0 777 7 88 88888 7 5 0 0 22 77777777777777777777777777777 7 7777 7 7 7 22 4 0000 0 8 8 888 44444444444444444444444444444 7 0 7 2 7 0 7 77 3333333333333333 5 7 7 00 222222 0 0 6 6 0 666666666 888888 7777777 00 8 0 2 00000 00 0 22 2 0
consensus : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTNANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
Reference ( family-9705 ) : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTNANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
gi|1 : CTCTCTTTTCAACAAATTTCGTAAAGC------------------T----TTCTTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCT------------AA---------------------GAAGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATTGT-CTCCTAA-TTATCCGTACCT-G----CCCCGTGTTTACTAAT---AGTGG--CAAGCGCCTCGG---GAAAAC-TG--CACATGGGACGGTCCCA-ATTGAGTTT--TA---------------ATT---C-AA----TAGCCA-C--GACAGA-TAATCTTT-TTGCAATATACCGTAAGTGT----ATAG-CAATATTAAATCTATTAT-AATTTT-----TTTAGCC-------------AG--CATATTTCA-ATATTCAGTCGGG-TTCACAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAA-TAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATTTTGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--AT-TGAAT-TTTACGTGCAAATTTAA
gi|10 : AAGGTATCACAAATCTTTA-------TGAG------AAGCGAACAATTAT-GAGGTGCTCA--ACATCCAAGCCATA-TC-TG-TATTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCTCGACTCGT--CTAC-T--A-AACAATTTTTGT-CTCCTAA-TTATCCGTACCT-G----CTCCGTGTTTACT--T---AGTGG--CAC
gi|11 : TTGATTTTTCTTG-AAGCACCGGCTTGTAACTAC-CTCACAACGATTATTGT-CCCCTAAGTTAGCCTTACCTGGGAAGTAACGGGAATAAT--CGTGAGTGG--TTAGCGCCTCGA-----AAAC-TGTACACATGGGAC----TCACAGTTACTTT--T
gi|12 : ATAATGAA---TC----TACCAAGGTATCACAAATCTTTACCAGAAGTGAAT-----AA--------TTAC-GAGGTGTCCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTG
gi|13 : ctctttggcatggtgatgaacaatgtgCTCTATTCTCAATAAAC---------CTCGTTTGTTTA------GTCCAGTTTTTTGT--GAGT-TATACCCCTTG-----TCTTATA--TTATATTGAA-CATC-GA
gi|14 : cctaatCTCTCTTTTCAACAAACTTCTTAAAGCTCGTTTGTTTAGTTTCTGT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TT
gi|15 : tttaacA---------------GTT---CTGA----TAGCTA-T--GACTGA-TAATCTTT-ATGCAATATACCGT
gi|16 : atcg-------ATTATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTAAGTGTAAATTTAA
gi|2 : TTA--------GAT------AA--------TTAT-GAGGTGCCTATAGTGTCCAAGCCATA-TC-TGACGTTCGGGGTGTTAGC--AACTCTTGTTGT--CATG-A-TCACTGACGCGT--TTACCT--A-AACGATTATTGT-CTCCTAA-TTA-CCACACCTGA----CATCGTGTCTACT--T---AGTGG--CACAGGCCGCAA---GAAAAC-TGTGAACATGGA-------CA-ATCCACTTT--TA---------------A--------A-----AGTCA-C--GACTGC-TAATCTTT-TCGCAATATAC-----GGGT----ATAA-CAATATTGAA--TATT-T-CACTTTAAAACTTTAGCCAGTAATATACCAAAG-ACATATATTACATATTCAGCCGAG-TTCTGAATTC-AATTTTAC----GAAC---------------ACTTCC-AGTAAATAA--AGTTGT-T----GAACAAATTACCGTTGTTCGCGGCGTGGGAATAT-ATC----------ATATA-----TTAT-------ATATTCtg
gi|3 : taatgagtaa--T---AGTGGTTCTCGCGCCTCGAAAAGAGAAC-TGTACACATGGGACG----CA-AGTTACTTT--TATGCAAACTAATCGAAGTT---C-GT----TAGATA-CATGACTGACTAATCTTTAGTGCAATATACCGTAAGCAT----GTAGACAATATTAAATCTAATATAAATTCTA------TAG-C-------------AGCACACATTTCA-ATATTCAGTTGGA-TTTGCAATTT-ACTTTTTCTG--AAACAATAGATTAGAGTTCAGTTCCGCCTTAGT-A-GAG-TGT-A----TAA-AAA-TAC---AATTTTTG----------AA-TTC---A-----GATACA------AAT-------CT-ATC-AA-ATCAG--------ATT--CTCTGAACATTTATATGCAATTTTA
gi|4 : CTCGG---GAAAAC-TG--CACATGGGAC-----CA-ATTGAGTTT--TA---------------ATT---C--A----TAGCCAAC--GACAGA-TAAT---T-TTGCAACTTACCGTAAGTGT----ATAG-CAATAT-AAATCTATTAA-AATTTT------TTAGCC-------------AG--CATATTTCA-ATATTCA-TCGGGTTTCACAATTCAACTTTTA-TGATAAAC----GATC-GAGTT-AGTT-C-CGTAAGTAA-GAGTTGT-TTTAAAAACAAATTA-CGTAGTTCTCGGCGTGTG-ATAA-TTTGCAAATAATAATATACATGTTAATAGATAAAATAATAAAA-ATAAGCT-----AATT--CT-TGAA--TTTACGT-CAA--TTAA
gi|5 : gaatcgTGTTAACT--TTATAGTTG--CATGAGCCCTGA---GAAACCGCGTACA-ATGGGACA---T---GCTGAATTTCATA---------------ATTAATC-AAGTTTTAGT-A-G--AGTTGA-GAAT-TAT-TTGCAAAAT--CAT---CTTTTTAACAG-CTATATCAAATGTGCTA--GATGGCA----CTTGG----------------G-A-ATATTTCA-ATATTAAATCAGG-TTCACAATTC-AATTTGACCGACAAAC----CATA-TAGTT--GT-----ATAAAGAATAAGTTCTGT----AAATAAATTACt
gi|6 : CTCTCTTTTCAACAAACTTCGTTAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTGACATGTCTTGTA-TT-ATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCTTTA-------TGAG------AAGCGAATAATTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATAGT-CT
gi|7 : tttaacTCGTAACAATATACACTTC--G-----CATTGCAATCTATATTGAAACATCCGAATAC--AGG-ATAACAAATCTTTA-------TGAAGAAGCGAA--------TAATAGAGGTGCTCA--ACGTTCAAGCCATAGTCTTG-TGTTT-GGGTGTTAACTC-ACAATTGATCT--CTTGAA-TCCC--ACTCGT--CTAC-T--A-AACA--TA-TGTCCTCCTAA--TAT-CGTACCTGG----CCTCGTG-TTACT--T---AGTG
gi|8 : tgttttattgtgcgtGTTT-CTTA------TT----TT--TTGTAAGAGT-TACACACCTTG-----TCTTGTA-TT-ATATAGAA-CATC-GAATACCAAGGTATCACAAATCTT-------------------AA--------TTAT-GAGGTGCTCA-----------------TC-TG-TGTTCGGGGTGTTAACACAACCTTTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATCGT-CTCCTAA-TTATCCGTACCT-G----CTCTGTGTTTACT--T---AGTGG--C
gi|9 : tATATTTCA-CTATTCAGTCGGG-TTTGCAATTC-ATCTTTACTGATA----------C---------CTCC-CGTAAGTAA--AGTCGT-T----GAACAAATCATCGCAGTTCTCGGCTTGTGAATAA-TTTGTAA-----AATAAA-----TAAT-------GTA--CAAATATGAATTAGATAAATTTATT-TAAA---TTA---GCAAATT
blockSeqs : T T A T G GTTTCTGT TT A ACATG A T A C C T TGAGAAGCGAACAA A TAG G T A T TT A A AA C TC C A C G T GGGAAG T T . GTG TT C AAA G TA AT C G T C CA TGCAAACTAATCGAAGTTCGT T CAT C C A AA G TTTA A T ATA AAAACTTTAGCCAGTAATATACCAAAGA C G T T A A T AT AATAGATTAGAGTTCA C G A TA TTTAA C C A . GCAAATAAT CATGTT AGATAAA TA T C AGATA TA C CA A A
blockSeqs : T G T T G GTCCAG CC . . . T . . C T CCAGAAGTGAATAA . A . . . T . . . . . . . G . . G GA A A . TAT . A . . TG T . T C C . ATTAATCAAGTTT C AC . C . AA C . . T AA ATAGCAGCA . G . G . C T AC GATCGAGTTA C . G G GT C C A . GTAA T . AT . C . . . C T T
blockSeqs : . . . T G GT CC . . . . . . A T TGAGAAGCGAATAA . A . . . T . . . . . . . G . . T GG A T . . . C . . TA G . G T C . GTTCTGA T T . C . . T . . C T TTAGCCAG . A . A . C C AT CATATAGTT C . G G T T C . . A T . AA . T . . . . C A
blockSeqs : . TT . . . . . . . C T TGAAGAAGCGAA . A . . . A . . . . . . . A . . T G C T . . . C . . TA . . T G G . ATTCA C C . . . . C . . . A ACTTGGGA . G . A . A T . A . . A . A C T . . . . . A . . . . . . . .
blockSeqs : . . . . . . T GATAA . A . . . . . . . . . . . A . . . G T T . . . T . . . . . C G A . AA . G . . . . . . G . T . . C . . G . T . . . A
blockSeqs : . AA . . . . . . . . . . . . A . . . . .
blockSeqs : . .
blockSeqCons : GT********** CGAGAAGCGAATAA************* GG**** ** TA N**** GTTCA************************ ** AA* ATTAGCCGG******************** ATNAGTTA******** A******** C*
originalCons : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTA-------TGAA------AA--------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACG---TCA-ATTNANTTT--TA---------------ATT---C-GA----TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGTAAGCGT----ATAG-CAATATTAAATCTATTAT-AATTTTA----TTTAGCC-------------AG-ACATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAAC----GATC-GAGTT-AGTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCGCAA-----AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
finalCons : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTAGT----------TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTACGAGAAGCGAATAA-------------TTAT-GAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGACN----CA-ATTNANTTT--TAGTTCA------------------------TAGCCA-C--GACTGA-TAATCTTT-TTGCAATATACCGT--GCGT----ATAG-CAATATTAAATCTATTAA-AATTTTATTAGCCGG--------------------CATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAACATNAGTTA--------GTTCC-CGTAAGTAA-GAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAA-TTCA--------AATATA-----TAAT-------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
Alignments
lowQualScore : 333333333333 11111 1 1 111111 222222 111 111 55555555555555555555555 555555555555555555555 1111 22 222222 44444444444444444444 7777777777777777 111 111111 33333333 5555555555555555555 22222 11 22
lowQualScore : 3 2 3 2 5 555555555555 44 6 66666 6 0 6 6 0 666666 1 1 3 888 5 5 5 3 77 5 5 77 5 77 5 1 5 6 3 111111 1 1 66 777 77 1 111 6 88 22222222222222222222222 6 1 1 777777777777777777777 6 3 2222 6 6 6 6 77 4 8 3 333333 3 8 0 55555555555555555555 6 1 6 2 6 1 1 44 6 5555555555555555 777 111 1 9 666666 1 1 0 5 99999999 9 0 1111111111111111111 77 0 8 3 00000 11 8 11 8 6
lowQualScore : . . . . . ............ .. . ..... . . . . . ...... . . . ... . . . . .. . . .. . .. . . . . . ...... . . .. ... .. . ... . .. ....................... . . . ..................... . . .... . . . . .. . . . ...... . . . .................... . . . . . . . .. . ................ ... ... . . ...... . . . . ........ . . ................... .. . . . ..... .. . .. . .
lowQualScore : 2 5 5 5 0 888888888888 66 7 77777 7 6 7 7 8 777777 0 4 6 000 7 7 7 5 99 7 7 99 7 99 7 4 7 7 2 888888 0 7 99 555 99 0 777 7 88 77777777777777777777777 7 0 0 777777777777777777777 7 7 7777 7 7 7 7 55 6 0 8 000000 8 0 8 44444444444444444444 7 0 7 2 7 0 7 77 7 7777777777777777 555 777 0 3 222222 0 0 6 6 22222222 0 8 7777777777777777777 00 8 0 2 00000 00 0 22 2 0
consensus : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTATGA-GAAGCGAATAATTATGAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGA----CNC----------------A-ATTNANTTTTA---------------GTTC--AT-AGCCA-C--GACTGA-TAATCTTT-TTGCAATAT-ACCGTAAGCGTATAG-CAATATTAAAT------CTATTA-AAATTTTA-TTAG-------CC---G-GCATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAA-CG----AT-GAG---TTAGTTCC-CGT---AAGTAAGAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATT--C----AAATATATAAT-------------------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
Reference ( family-9705 ) : CTCTCTTTTCAACAAACTTCGTAAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTATCACAAATCTTTACGA-GAAGCGAATAATTATGAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACGATTATTGT-CTCCTAA-TTATCCGTACCTGG----CNCCGTGTTTACT--T---AGTGG--CACGCGCCTCGA---GAAAAC-TGTACACATGGGA----CNC----------------A-ATTNANTTTTA---------------GTTC--AT-AGCCA-C--GACTGA-TAATCTTT-TTGCAATAT-ACCGT--GCGTATAG-CAATATTAAAT------CTATTA-AAATTTTA-TTAG-------CC---G-GCATATTTCA-ATATTCAGTCGGG-TTCGCAATTC-ACTTTTACTGATAAA-C-----AT-NAG---TTAGTTCC-CGT---AAGTAAGAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATT--C----AAATATATAAT-------------------ATAATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTACGTGCAAATTTAA
gi|1 : CTCTCTTTTCAACAAATTTCGTAAAGCT----------------------TTCTTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TTTATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCT----------------AA----GAAGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATTGT-CTCCTAA-TTATCCGTACCT-G----CCCCGTGTTTACTAAT---AGTGG--CAAGCGCCTCGG---GAAAAC-TG--CACATGGGACGGTCCC----------------A-ATTGAGTTTTA---------------ATTCA-AT-AGCCA-C--GACAGA-TAATCTTT-TTGCAATAT-ACCGTAAGTGTATAG-CAATATTAAAT------CTATTA-TAATTTTT-TTAG-------CC---A-GCATATTTCA-ATATTCAGTCGGG-TTCACAATTC-ACTTTTACTGATAAA-CG----ATCGAG---TTAGTTCC-CGT---AA-TAAGAGTTGT-T----GAACAAATTACCGTAGTTCTCGGCGTGTGAATAATT--TTGCAAAATATATAAT-------------------ATAATCAAA-ATAAGCT-----AATT--AT-TGAAT-TTTACGTGCAAATTTAA
gi|10 : AAGGTATCACAAATCTTTATGA-GAAGCGAACAATTATGAGGTGCTCA--ACATCCAAGCCATA-TC-TG-TATTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCTCGACTCGT--CTAC-T--A-AACAATTTTTGT-CTCCTAA-TTATCCGTACCT-G----CTCCGTGTTTACT--T---AGTGG--CAC
gi|11 : TTGATTTTTCTTG-AAGCACCGGCTTGTAACTAC-CTCACAACGATTATTGT-CCCCTAAGTTAGCCTTACCTGGGAAGTAACGGGAATAAT--CGTGAGTGG--TTAGCGCCTCGA-----AAAC-TGTACACATGGGA----CTC----------------ACAGTTACTTTT
gi|12 : ATAATGAA---TC----TACCAAGGTATCACAAATCTTTACCA-GAAGTGAATAATTACGAGGTGTCCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTG
gi|13 : ctctttggcatggtgatgaacaatgtgCTCTATTCTCAATAAAC---------CTCGTTTGTTTA------GTCCAGTTTTTTGT--GAGT-TATACCCCTTG-----TCTTATA--TTATATTGAA-CATC-GA
gi|14 : cctaatCTCTCTTTTCAACAAACTTCTTAAAGCTCGTTTGTTTAGTTTCTGT----TTCCTTGTAAGAGT-TACACCCCTTG-----TCTTGTA-TT
gi|15 : tttaacA---------------GTTCTGAT-AGCTA-T--GACTGA-TAATCTTT-ATGCAATAT-ACCGT--
gi|16 : atcg-------------------ATTATCAAA-ATAAGCT-----AATT--CT-TGAAC-TTTAAGTGTAAATTTAA
gi|2 : ATAATTATGAGGTGCCTATAGTGTCCAAGCCATA-TC-TGACGTTCGGGGTGTTAGC--AACTCTTGTTGT--CATG-A-TCACTGACGCGT--TTACCT--A-AACGATTATTGT-CTCCTAA-TTA-CCACACCTGA----CATCGTGTCTACT--T---AGTGG--CACAGGCCGCAA---GAAAAC-TGTGAACATGG-------AC----------------A-ATCCACTTTTA---------------------AA-AGTCA-C--GACTGC-TAATCTTT-TCGCAATAT-AC-----GGGTATAA-CAATATTGAATATTTCACT-TTA-AAACTTTAGCCAGTAATATACCAAAG-ACATATATTACATATTCAGCCGAG-TTCTGAATTC-AATTTTAC----GAA-C-----AC-----------TTCC-AGT---AAATAA-AGTTGT-T----GAACAAATTACCGTTGTTCGCGGCGTGGGAATATAT--C------ATATATTAT-------------------ATATTCtg
gi|3 : taatgagtaattag--T---AGTGGTTCTCGCGCCTCGAAAAGAGAAC-TGTACACATGGGA----CGC----------------A-AGTTACTTTTATGCAAACTAATCGAAGTTC--GTTAGATA-CATGACTGACTAATCTTTAGTGCAATAT-ACCGTAAGCATGTAGACAATATTAAAT------CTAATATAAATTCTA-T-AG-------CA---GCACACATTTCA-ATATTCAGTTGGA-TTTGCAATTT-ACTTTTTCTG--AAA-CAATAGAT-TAGAGTTCAGTTCCGCCT---TAGT-AGAG-TGT-A----TAA-AAA-TAC---AATTTTTG----------AATT--C----AGATACA-AAT-------------------CT-ATC-AA-ATCAG--------ATT--CTCTGAACATTTATATGCAATTTTA
gi|4 : CTCGG---GAAAAC-TG--CACATGGGA----C-C----------------A-ATTGAGTTTTA---------------ATTC--AT-AGCCAAC--GACAGA-TAAT---T-TTGCAACTT-ACCGTAAGTGTATAG-CAATAT-AAAT------CTATTA-AAATTTT--TTAG-------CC---A-GCATATTTCA-ATATTCA-TCGGGTTTCACAATTCAACTTTTA-TGATAAA-CG----ATCGAG---TTAGTT-C-CGT---AAGTAAGAGTTGT-TTTAAAAACAAATTA-CGTAGTTCTCGGCGTGTG-ATAATTTGC----AAATA-ATAATATACATGTTAATAGATAAAATAATAAAA-ATAAGCT-----AATT--CT-TGAA--TTTACGT-CAA--TTAA
gi|5 : gaatcgTGTTAACT--TTATAGTTG--CATGAGCCCTGA---GAAACCGCGTACA-ATGGGA----CATGCTGAATTTCATAATTA-ATCAAGTTTTA---------------GT----AG-AGT---------TGA-GAAT-TAT-TTGCAAAATCATCTT--TTTAACAG-CTATATCAAAT------GTGCTA-GA-TGGCA-CTTG------------G-GAATATTTCA-ATATTAAATCAGG-TTCACAATTC-AATTTGACCGACAAACC-----AT-A------TAGTT----GTATAAAGAATAAGTTCTGT----AAATAAATTACt
gi|6 : CTCTCTTTTCAACAAACTTCGTTAAGCTCGTTTGTTTA------GT----TTCCTTGTAAGAGT-TACACCCCTTGACATGTCTTGTA-TT-ATATTGAA-CATC-GAATACCAAGGTAT-ACAAATCTTTATGA-GAAGCGAATAATTATGAGGTGCTCA--ACGTCCAAGCCATA-TC-TG-TGTTCGGGGTGTTAACTCAACCATTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATAGT-CT
gi|7 : tttaacTCGTAACAATATACACTTC--G-----CATTGCAATCTATATTGAAACATCCGAATAC--AGG-ATAACAAATCTTTATGAAGAAGCGAATAAT-A-GAGGTGCTCA--ACGTTCAAGCCATAGTCTTG-TGTTT-GGGTGTTAACTC-ACAATTGATCT--CTTGAA-TCCC--ACTCGT--CTAC-T--A-AACA--TA-TGTCCTCCTAA--TAT-CGTACCTGG----CCTCGTG-TTACT--T---AGTG
gi|8 : tgttttattgtgcgtGTTT-CTTA------TT----TT--TTGTAAGAGT-TACACACCTTG-----TCTTGTA-TT-ATATAGAA-CATC-GAATACCAAGGTATCACAAATCTT---------------AATTATGAGGTGCTCA-----------------TC-TG-TGTTCGGGGTGTTAACACAACCTTTGATCT--CTTG-A-TCCCCGACTCGT--CTAC-T--A-AACAATTATCGT-CTCCTAA-TTATCCGTACCT-G----CTCTGTGTTTACT--T---AGTGG--C
gi|9 : tATATTTCA-CTATTCAGTCGGG-TTTGCAATTC-ATCTTTACTGATA---C------------------CTCC-CGT---AAGTAA-AGTCGT-T----GAACAAATCATCGCAGTTCTCGGCTTGTGAATAATT--TGTA-AAATAAATAAT-------------------GTA--CAAATATGAATTAGATAAATTTATT-TAAA---TTA---GCAAATT