lowQualScore : 1 1 11111 11111 111 1 222222 111111 2222222222222222 222222222222 2222 111111 11 1 11 111 111111 1 1 222 1 111111 1 11
lowQualScore : 2 4 4 8 5 4 777 55 0 5 5 00000 55555 000 6 0 222222 666666 7 0 8888888888888888 2 0 333333333333 6666 222222 4 55 4 9999 1 2 6666 22 77 4 0 4 1 5 22 3 000 0 3 5 88 4 9 2 4 7 0 8 3 2 2 0 4 4 4 5 4 888888 5 2 1 55 666 4 0 4 4 111111 4 4 7 0 5 0 00
lowQualScore : . . . . . . ... .. . . . ..... ..... ... . . ...... ...... . . ................ . . ............ .... ...... . .. . .... . . .... .. .. . . . . . .. . ... . . . .. . . . . . . . . . . . . . . . . ...... . . . .. ... . . . . ...... . . . . . . ..
lowQualScore : 2 0 4 1 4 4 888 44 4 0 0 99999 11111 000 7 8 111111 444444 0 1 5555555555555555 0 2 888888888888 7777 888888 0 55 0 4444 0 7 2222 33 55 1 1 1 9 0 55 2 444 1 1 0 44 4 7 2 2 0 1 4 7 9 4 7 0 8 4 0 4 222222 1 4 2 44 888 0 8 0 0 555555 0 0 5 6 0 7 33
consensus : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCC-TTTTACAATGCTGAACTGTTTA-GGCC---AAAACA--ATTGCAATCGAATT-TGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAAGC-----ATGATGAGCGATTTCGAG------ATGTTTCCCGGGTTTTCCTCTTG-AAAAA--T-TT-G-TACCCACATGTTCTCTAACGTTAGTTATAT-------T---NAAAAAA----CA------AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAG-CC-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGC-TTTATTTGTTGTTTGTGCTTACAAACATGGATACTAAG-TCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATCTTAAGACTTCTCCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TA--GATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTT-TATACTGATCAAACGTTATA-GTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAANGTTTGCTGGGGCGTTAGAAATTTTGATTA
Reference ( gi|2 ) : CTGGTCAAAATTGCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAATCTATTTCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCT-TTTTACAATGCTGAACTGTGTA-GGAC---AAAACA--ATTGCAATCGAAAT-TGTA-GTTACTCGAGCGTGACGGTTATTGTTGAAAAGG-----ATGATGAGCGATTTCGAG------ATGTTTCTCGGGTTTTCCTCTTG-ATAAA--T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAAAA----CA------AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAG-TC-ATTGGCATGGTTAAAATTGGGCACAGTTTAAGAAAAGTTGGTTTTCCTTCGC-TTCTTTTGTTGTTTGTGCTTACAAATATGGGTACTAAG-TCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGACCACAAAACTATCTTACGATTTCTCCGGAAATTCTACAGAACCGGAAGTG-TAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TA--GATTAGGTGAAAATAGTTTG-TTTTGTTTCTACGTATTCTT-TATACTGATCAAACTTTATA-GTC-AAAA------TAATCAAA-TAGAA-AACCAGTGCAATTCGAAAGGTTTATTGGGGCGTTAGAAATTTTGATTA
gi|1 : CTGGTCAAAATTGCTAACGCCA-ACTTTTA-TTTC-CAAA-GGTTTGAAATCTATTGCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCT-TTTTACAATGCTGAACTGTGTA-GGAC---AAA-CA--ATTGCAATCGAAAT-TGTAAGTTACTCGGGCGTGACGGTTATTGTTGAAAAGG-----ATGATGAGCGATTTCGAG------ATGTTTCTCGGGTTT-CCTCTTG-ATAAA--T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAAAA----CA------AGAAAACAGTTGT-GTGTATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAG-TCTATTGGCAGGGTTAATATTGG-CACAGTTTA-GAAAATTTGGTTTTCCTTCGCTTTCTTTTGTTTTTTGTGCTTACAAATATGGGTACTAAG-T-TCCAATTCTCAA-TTTTGTTTTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGCCAACAAAACTATCTTACGATTCTCCCGGAAATTCTACAG-ACCGGAAGTGAGAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAATAAAAAA--TA--GATTAGGTGAAAAT-GTTTG-TTTTGTTTCTACGTATTCTTATA-ACTGATCAAACTTTATA-GTCAAAAA------TAATCAAATTAGAA-AACCAGTGCAATTCG-AAGGTTTATTGGGGCGTTAGAAA-TTTGATTA
gi|3 : aCTTGTCAAAAGTTCTAACGCCCCACTTTTAGTTTCTTCAA-GGTTTAAAAACTATTTCA-AATGTATGATCAATGGAC-TTT---AATATTGCTTGCC-TTTTACAATGCTGAACTATTTA-GGCCCAAAAAACCCCACTCCAATCGAATT-TGCA-TTTACTCGAGCGTGACCGTTATTGTTGAAAAGC-----ATGGTGAGCGATTTCGAG------ATGTTTTCCGGGGGTTCC-----------------------CTACATGTTCTCTAACATTAGTTATAT-------T---TAAAAAAAAACCA------AGAAAACAGTTGT-GT--ATAA-TGCATGCGGTGCATGTCTACACAAAAACGCACAAGAG-CC-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAG--------------C-TTTATTTGATGTTTGTGCTCACAAACATGGATACTAAG-TCTTAAATTCTCAA-TTTTGTTCTTTGC-AATTCAACGGATGTATTTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGCGACCACAAAACTATCTTAAGACTTCTCCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATGGCCTCGACGG-TTAAAA-GATCATGCCACTTGAA--AAAAATGTA--GATTCGGTGAAAATATTTTC-ATTTGTTTCTTTGTATTCTT-T-TACTTATCAAACATTATA-GTC-AAAA------TAATCAAA-TAGAA-AAACAGTGCAATTCGAAAGG--TACTGGGGCGTTAGAAATTTTGATTAgt
gi|5 : atataCTAATCAAAATTTCTAACGCCCCAgt
gi|4 : aatatgtagttactcgaatgtgaccgttattgttgaaaagcatgatgagcgattttgagaaatttcccgggttttcctcttgaaaagttttgtacccacatgttctataacgtgaattatattcaaataacaagaaaacagtggtgtagaatgcggtgcatgtctacacaagaacgcacaagagccactggcatggtccaaactgggtgcagtttaaaagaagtttgttttccttcgcttcttttgttgtttgtgcttacaaacatggatactaagtctcaaattctcaatttgttctttacaaaatcaacgaacgtaattttattttattaccggtcgccagatatttcagcagagaccacacaactatctcaagacttctccgtaaattctacagaaccggaagtgtagacgaattgcgtcgaaggctaaaagatcatgcaacttgaataaaaaaagattcggtgaaaatattctgttttgtttctttttattctttatactgatcaaacgttataatcaaaataattaaatagaaaaacagtgcaattcgaaaggtttacCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTTTAAAATATTGTTT-CTGTTTTACATTGCTGAACTGTTTA-GGCC---AACA-A--ATTGCAATCGAATA-TGTA-GTTATGCGAGCGTGACCGTTATTGTTGAAAAAGCATGCATGATGAGCGATTTCGAG------ATGTTTCCCGGGTTTTCCTCTT---------T-TT---TACCAACATGTTCTCTAACGTTAGTTATATCTATATAT---AAAAAAAACAACA------AAAAAACA----------AGAA-AAC----AGTG-------------GAACGCACAAGAG-CC-AATGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAATTTGTTTTTCTTCGC-TTTATTTGTTGTTTGTGCTTACAAATATGGATACTAAG-TCTCAAAT--------------CTTTAC-AAATCAACGGACATAATTTGAATTTATCACCGGTCGCCAGAGATTTCAACAAAGACCACAAAACTATCTTAAGAC-----------TTCT------CCGGAA-----------ATT-----------CTACAA-GATCGTGCAACTTGAAT-AAAAA--AAAAGATTCGGTGAAAATATTCTG-TTTTGTTTCTTTTTATTCTT-TATACTATTCAAACATTATA-GTC-AAAG------TAATCAAA-TAGAA-AA------------------------GGGGCGTTACAAATTTTGATTAtat
gi|4 : ataCTAATCAAAATTTGTAACGCCCCTTTTCTA-TTTgt
gi|10 : atactggtcaaaatttctaacgccccacttttatttctcaaaggtttgaaaactatttcagaatatatgatcaatggacttttaaaatattgtttctgttttacattgctgaactgtttaggccaacaaattgcaatcgaatatgtagttatgcgagcgtgaccgttattgttgaaaaagcatgcatgatgagcgatttcgagatgtttcccgggttttcctcttttttaccaacatgttctctaacgttagttatatctatatataaaaaaaacaacaaaaaaacaagaaaacagtggaacgcacaagagccaatggcatggtccaagctgggcgcagtttaaaagaaatttgtttttcttcgctttatttgttgtttgtgcttacaaatatggatactaagtctcaaatctttacaaatcaacggacataatttgaatttatcaccggtcgccagagatttcaacaaagaccacaaaactatcttaagacttctccggaaattctacaagatcgtgcaacttgaataaaaaaaaagattcggtgaaaatattctgttttgtttctttttattctttatactattcaaacattatagtcaaagtaatcCTGGTGAAAATTTCTAATACCCCACTTTCA-TTTCTCAAA-GGTTTTAAAACTATTTCAGAATTTATTATCAATGGGC-TTT---AATATTGTTAGCC-TTTTACAAT--TG---------------------CA--AT---AA---AATT-TGTA-GTTACACAACCGTAACCGTTATTGTTGAAAGGC-----GTGATGAGCGATTTCGAG------ATGTTATACGGGTTTTTCCCTTG-AAAGG--T-TTAG-TATCCGCt
gi|14 : ataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCC-TTTTACATTGCTGAACTGTTTA-CGCC---AAAACA--ATTGCAGT
gi|13 : ataCTGGTCAAAATATCTTACTCCCCACTTTTA-TTTGTCAAA-GGTTTGAAATCTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCC-TTTTACAATGCTGTACTGTTTA-GGAC---AAAAC---ATTGTAATCGAATT-T
gi|22 : ataTGGTCAAAATTTGTAACGTACAATTTTT----TCTGAAA-CCTTTGATTACTCTTTCTTAATTTCTGATCAATGAAT-TTT---GATATTGTTTG
gi|7 : tataaCTAACGCCCCACTTTTA-TTTCTCAAAAGGTTTGAAAGCAAGTTCAGAATATATGATCAATGAAG-TTT---AATATCGTTTGCC-TTTTACAATGCTGAACTGTTTA-GGCC---AAATAA--ACTGCAATCGAATT-TGTA-ATTACTCGAGCGTGACCGATATTGTTGAAAAGC-----ATTATGAGTGATTTTTAGACTCAAATGTTTCCCGGGTTTTTCTCTGGAAAAAA--TGTT-G-TGCCCACATGTTCTCTAACGTTATTTATAC-------T---AAAAAAAACC-CAACATCTATAAAACAGTTGT-GT--ATAA-TGC----GATGTATTTCTACACAAGAACGCGCAAGAA-CA-ATTGACATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTGTTCCTTCGC-TTTATTTGTCGTTTGTGCTTACAAACATGGTTACTAAG-TCT
gi|21 : t-TTTCTCAAA-AGTTTGATATTTTTTTCAGAATTTATGATCAATGGACTTTT---ATTACTGTTTGCT-TTTTAAAATGCTGAACAGT-TACGGCC---AAaa
gi|5 : AATATGTA-GTTACTCGAATGTGACCGTTATTGTTGAAAAGC-----ATGATGAGCGATTTTGAG------AAATTTCCCGGGTTTTCCTCTTG-A-AAAGTT-TT-G-TACCCACATGTTCTATAACGTGAATTATAT-------T---CAAATAA----CA------AGAAAACAGTGGT-GT--AGAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAG-CC-ACTGGCATGGTCCAAACTGGGTGCAGTTTAAAAGAAGTTTGTTTTCCTTCGC-TTCTTTTGTTGTTTGTGCTTACAAACATGGATACTAAG-TCTCAAATTCTCAA--TTTGTTCTTTACAAAATCAACGAACGTAATTTTATTTTATTACCGGTCGCCAGATATTTCAGCAGAGACCACACAACTATCTCAAGACTTCTCCGTAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCGTCGAAGG-CTAAAA-GATCATGCAACTTGAAT-AAAAA--AA--GATTCGGTGAAAATATTCTG-TTTTGTTTCTTTTTATTCTT-TATACTGATCAAACGTTATA-ATC-AAAA------TAATTAAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTACTGGGGCGTTAGAAATTTTGATTAtaaa
gi|17 : AAAGC-----ATGATGAGCGATTTCGAG------ATTTTTCACGGGTTTTCCTCTTG-AAAAG--T-TT-ATTACCCACGTGTTCTCTAGAGTTATTTATGT-------TAGAAAAAAAA----CA------AGAAAACAACAAT-AT--ATAA-Tgtat
gi|6 : -G-TACCCACATGTTCTCTAACGTTAGTTATAT-------T---AAAAAAG----CA------AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAG-TC-ATTGGCATGGTCCAAGCTGGTCGCAGTATACGAGAAGTTTGTTTTCCTTCGC-TTTATTTGTTGTTTGTGCTTACAAACATG---------------AATTCTCAA-ATTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAAC--AGTCTACAAATATATCTTATGACTTCGCCGGAAATTCTACAGAACCAAAAGTC-CAGAGGAATGGGTTTGACGG-CTAAAA-TATCGTGAAACTTTAAT-AAAAA--TA--GATTCGGTGAAAAGATTTTG--TTTGTTTCTTTGTATTCTT-TATACTGATCAAACCTTATA-ATC-AAAA------TAATCAAA-TACAATAAGCAGTGCAATTCGAATGGTT
gi|19 : aaaagttcaTCTATCTTTAATCGTTT-------A---CGAAAAA----CA-------TAAAATAACTGGAGT--ATAA-TGC----GTTGCATGATTGTATAAGAATGTGCAAGAGCTT-ATTGTTATAGTTGA
gi|20 : ta----CA------AGAAAACAGTTGT-GT--ATAAATGC----GGTATATGTCTACACAACAACGCGCAAGAG-CC-ATTGTCATGGTCCAAGCTAGGCGCAGTTTAAGAGAAGTTTGTTTTCCTcgcgtgttggtatag
gi|8 : AGTTCG-GT--GAAA-TGC----GGTGCATGTCTACATAAGAATGCGCAAGAG-CT-GTTGGCATGGTTCAAGGTGGGCGCAGTTTAAGAGAGGTTTGTTTTCCTTCAC-TATATTTATTGTTTGTGCTTACAGAT-T--GT-------TCTCAAATTCTCCATTTTTGTTCTTTAC-AAATTAACGGA--TA----------ATTACAGGTCGTCAGAGCTTTCAACAGAGACCACGAAATTGTCTTAAGACTTGTCCAGAAATTCTAC---------------AGACGACCTGCCTCGACGG-CCAAAA-CATCTTGCATCTTGA---------------ATTCGGTGAAAACAATTTG-TTTTGTTTATTTTTATTCTT-TACACTGATCAAACGTTATA-GTC-AAAA------TAA---------------CTGTATTATGCAAAATGTTTGCTGGGGCGTTAGACATTTTGATTA
gi|23 : GTTTTCCCTCAC-TATATTTGATGTTTATGCTTACAAAT-T---CAC--AGTTCTCAGATTCTCAA-TTCTgta
gi|12 : tAA-TTTTGTTCTTTAC-AAATCAACTGACGTATTTTCAATTTAGTACCGGTCGCCAGAGATTTAAACAGATACCACAAAACTATCTTACGATTTATCCGCAAATTCTACGGAACTGGAAGTG-TAGATGAATTGCCTCGACGG-CTA
gi|9 : TGTTCTTTAC-AAATTATCGGACG-AATT-GAATTCAGTATAGGTCGCC-----TGTAAGTAAAGAC-------------------TTGTCCGGAAATTCTATAGAGCCGGAAGTG-TAGACGACCTGCTTGGGCGGCCCAAAA-CATCGTGCAACTTGAAT-AAAAA--TT--CATTCGGTGAAAA-ATGTTA-CTTCGTTTCTTTTTATTCTT-TATACTGGTCAAACGTTATA-GTC-AAAATACATGTAATTGAA-TAGGA-AAACAGTGCAATGCAAAATGTTTGCTGGGGCGTTAGAAATTTT
gi|16 : taC-AAATCAACGGACGTAATTTGAATTTATTATCGGTCGCTAGATATTTCAAAAGAGACCACAAAACTATCTTAATACTTCTCCGGAAATTTTACTGAACCGGAAGTG-TACACAAATTGCCTCGAC
gi|18 : ACAGAACAGAAAATG-TGGACGACCTACCTTGATGG-CCAAAGCGA-CGTGCAGGTTAAAT-AAAAT--T----ATT-CGCGAAAATATTTTGTTTTTGTTTCTTTTTATTCTT-TATACTAATCA
gi|11 : CTTCAAT-AAAAA--CT--GATTCGGTGAAAACATTTTG-TTTATTTT-----TATTCCT-CATACTGATCAAACGTTATA-GTG-AAAA------TAATTGAA-CAGAA-ACACAGTGCAATGCAAAGTGTTTGCTGGGGCGTTAAAGATTTTGATTA
gi|15 : tgtacatgtatgtgtatgtcgacgtaatttgtgacaaagcgTTCTGC----TCTT-TATACTGATCAAAACATATATGCC-AGAA------------------------CAACGCAATTCAAAATGTTTGGTGTGGCGTTAGAAATTTTGATTA
gi|24 : tctacgcaattcaaattcataagaagttatcgataaaaacttccA-GTC-AAAA------TAATCAAA-TAGAA-AA-CAGTGTAATTTGA-------------GTGTTAGAAATTTTGATTAg
gi|4 : TGGGGCGTTAGAAATTTTGA
gi|14 : atactggTGGGGCGTTAGAAATTTTGActtttatttctcaaaggtttgaaaactatttcagaatatatgatcaatggacttttaaaatattgtttctgttttacattgctgaactgtttaggccaacaaattgcaatcgaatatgtagttatgcgagcgtgaccgttattgttgaaaaagcatgcatgatgagcgatttcgagatgtttcccgggttttcctcttttttaccaacatgttctctaacgttagttatatctatatataaaaaaaacaacaaaaaaacaagaaaacagtggaacgcacaagagccaatggcatggtccaagctgggcgcagtttaaaagaaatttgtttttcttcgctttatttgttgtttgtgcttacaaatatggatactaagtctcaaatctttacaaatcaacggacataatttgaatttatcaccggtcgccagagatttcaacaaagaccacaaaactatcttaagacttctccggaaattctacaagatcgtgcaacttgaataaaaaaaaagattcggtgaaaatattctgttttgtttctttttattctttatactattcaaacattatagtcaaagtaatcaaatagaaaaggggcgttacaaattttgattagt
Alignments
lowQualScore : 11111 111111 111 111111111111 222222 1111 111111
lowQualScore : 4 4 2 1 4 777 1 777 0 777 5 22222 444444 0 2 77 4 777 777777777777 9999 000000 777 3 55 3 8888 4 4 4 66 99 4 66 4 3 55 0 4 3 4 4 4 1111 1 0 66 1 3 4 2 4 3 000000 2 3 3 3 3 22
lowQualScore : . . . . . ... . ... . ... . ..... ...... . . .. . ... ............ .... ...... ... . .. . .... . . . .. .. . .. . . .. . . . . . . .... . . .. . . . . . . ...... . . . . . ..
lowQualScore : 0 0 9 0 0 000 1 888 4 000 7 55555 444444 2 1 44 4 999 111111111111 4444 000000 000 6 00 6 5555 0 0 4 11 11 6 44 0 5 55 8 0 6 0 4 0 4444 3 9 44 1 6 0 3 0 6 555555 5 6 6 4 5 11
consensus : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
Reference ( family-967 ) : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAA-T-TT-G-TACCCACATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAANGTTTGCTGGGGCGTTAGAAATTTTGATTA
gi|1 : CTGGTCAAAATTGCTAACGCCA-ACTTTTA-TTTC-CAAA-GGTTTGAAATCTATTGCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCTTTTTACAATGCTGAACTGTGTAGGAC---AAA-CA--ATTGCAATCGAAATTGTAAGTTACTCGGGCGTGACGGTTATTGTTGAAAA-----GGATGATGAGCGATTTCGAGA------TGTTTCTCGGGTTT-CCTCTTGATAAA-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAA----AA------CA---AGAAAACAGTTGT-GTGTATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAGT-CTATTGGCAGGGTT-AATATTGGCACAGTTTA-GAAAATTTGGTTTTCCTTCGCTTTCTTTTGTTTTTTGTGCTTACAAA--TATGGGTACTAAGT-TCCAATTCTCAA-TTTTGTTTTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGCCAACAAAACTATC--TTACGA-TTCTCCCGGAAATTCTACAG-ACCGGAAGTGAGAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAATAAAAAA--TAGATTAGGTGAAAATG-TTTG-TTTTGTTTCTACGTATTC-TTATAACTGATCAAA-CTT-TATAGTCAAAAA------TAATCAAATTAGAA-AACCAGTGCAATTCG-AAGGTTTATTGGGGCGTTAGAAA-TTTGATTA
gi|10 : aCTGGTGAAAATTTCTAATACCCCACTTTCA-TTTCTCAAA-GGTTTTAAAACTATTTCAGAATTTATTATCAATGGGC-TTT---AATATTGTTAGCCTTTT----------------------------ACA--ATTGCAATAAAATTTGTA-GTTACACAACCGTAACCGTTATTGTTGAAAG-----GCGTGATGAGCGATTTCGAGA------TGTTATACGGGTTTTTCCCTTGAAAGG-T-TTAG-TATCCGCgt
gi|11 : ataCTTCAAT-AAAAA--CTGATTCGGTGAAAACATTTTG-TTT-----ATTTTTATTCCTCAT-ACTGATCAAA-CGT-TATAGTG-AAAA------TAATTGAA-CAGAA-ACACAGTGCAATGCAAAGTGTTTGCTGGGGCGTTAAAGATTTTGATTA
gi|12 : tgtacatgtatgtgtatgtcgacgtaatttgtgacaaagcgAA-TTTTGTTCTTTAC-AAATCAACTGACGTATTTTCAATTTAGTACCGGTCGCCAGAGATTTAAACAGATACCACAAAACTATC--TTACGATTTAT-CCGCAAATTCTACGGAACTGGAAGTG-TAGATGAATTGCCTCGACGG-CTA
gi|13 : CTGGTCAAAATATCTTACTCCCCACTTTTA-TTTGTCAAA-GGTTTGAAATCTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGTACTGTTTAGGAC---AAAAC---ATTGTAATCGAATTT
gi|14 : ataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACATTGCTGAACTGTTTACGCC---AAAACA--ATTGCAGT
gi|15 : ataTTCCTTCTGCTCTTTAT-ACTGATCAAAACATATAT-GCC-A--------------------GAA-CAAC---GCAATTCAAAATGTTTGGTGTGGCGTTAGAAATTTTGATTA
gi|16 : tctacgcaattcaaattcataagaagttatcgataaaaacC-AAATCAACGGACGTAATTTGAATTTATTATCGGTCGCTAGATATTTCAAAAGAGACCACAAAACTATC--TTAATACTTCT-CCGGAAATTTTACTGAACCGGAAGTG-TACACAAATTGCCTCGACg
gi|17 : AAA-----GCATGATGAGCGATTTCGAGA------TTTTTCACGGGTTTTCCTCTTGAAAAG-T-TT-ATTACCCACGTGTTCTCTAGAGTTATTTATGT-------TAGAAAAAA----AA------CA---AGAAAACAACAAT-AT--ATAA-T
gi|18 : ACAGAACAGAAAATG-TGGACGACCTACCTTGATGG-CCAAAGCGA-CGTGCAGGTTAAAT-AAAAT--T--ATTC-GCGAAAATATTTTGTTTTTGTTTCTTTTTATTCTTTAT-ACTAATCA
gi|19 : TCTATCTTTAATCGTTT-------A---CGAAA----AA------CA----TAAAATAACTGGAGT--ATAA-TGC----GTTGCATGATTGTATAAGAATGTGCAAGAGCTT-ATTGTTATAGT
gi|2 : taCTGGTCAAAATTGCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAATCTATTTCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCTTTTTACAATGCTGAACTGTGTAGGAC---AAAACA--ATTGCAATCGAAATTGTA-GTTACTCGAGCGTGACGGTTATTGTTGAAAA-----GGATGATGAGCGATTTCGAGA------TGTTTCTCGGGTTTTCCTCTTGATAAA-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAGT-C-ATTGGCATGGTTAAAATTGGGCACAGTTTAAGAAAAGTTGGTTTTCCTTCGCTTCT-TTTGTTGTTTGTGCTTACAAA--TATGGGTACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGACCACAAAACTATC--TTACGATTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTAGGTGAAAATAGTTTG-TTTTGTTTCTACGTATTCTTTAT-ACTGATCAAA-CTT-TATAGTC-AAAA------TAATCAAA-TAGAA-AACCAGTGCAATTCGAAAGGTTTATTGGGGCGTTAGAAATTTTGATTAtgacgcgtgttggtatag
gi|20 : ------CA---AGAAAACAGTTGT-GT--ATAAATGC----GGTATATGTCTACACAACAACGCGCAAGAGC-C-ATTGTCATGGTCCAAGCTAGGCGCAGTTTAAGAGAAGTTTGTTTTCCT
gi|21 : -TTTCTCAAA-AGTTTGATATTTTTTTCAGAATTTATGATCAATGGACTTTT---ATTACTGTTTGCTTTTTAAAATGCTGAACAGTTACGGCC---AA
gi|22 : TGGTCAAAATTTGTAACGTACAATTTTT----TCTGAAA-CCTTTGATTACTCTTTCTTAATTTCTGATCAATGAAT-TTT---GATATTGTTTGtaaa
gi|23 : tataaTGTTTTCCCTCACTATA-TTTGATGTTTATGCTTACAAATTCACAG-T------TCTCAGATTCTCAA-TTCT
gi|24 : AGTC-AAAA------TAATCAAA-TAG-A-AAACAGTGTAATTTGA-------------GTGTTAGAAATTTTGATTA
gi|3 : CTTGTCAAAAGTTCTAACGCCCCACTTTTAGTTTCTTCAA-GGTTTAAAAACTATTTCA-AATGTATGATCAATGGAC-TTT---AATATTGCTTGCCTTTTACAATGCTGAACTATTTAGGCCCAAAAAACCCCACTCCAATCGAATTTGCA-TTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGGTGAGCGATTTCGAGA------TGTTTTCCGGGGGTTCC---------------------CTACATGTTCTCTAACATTAGTTATAT-------T---TAAAA----AAAAAC--CA---AGAAAACAGTTGT-GT--ATAA-TGCATGCGGTGCATGTCTACACAAAAACGCACAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAG--------------CTTTA-TTTGATGTTTGTGCTCACAAA--CATGGATACTAAGTCTTAAATTCTCAA-TTTTGTTCTTTGC-AATTCAACGGATGTATTTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGCGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATGGCCTCGACGG-TTAAAA-GATCATGCCACTTGAA--AAAAATGTAGATTCGGTGAAAATATTTTC-ATTTGTTTCTTTGTATTCTTT-T-ACTTATCAAA-CAT-TATAGTC-AAAA------TAATCAAA-TAGAA-AAACAGTGCAATTCGAAAGG--TACTGGGGCGTTAGAAATTTTGATTA
gi|4 : atataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTTTAAAATATTGTTTCTGTTTTACATTGCTGAACTGTTTAGGCC---AACA-A--ATTGCAATCGAATATGTA-GTTATGCGAGCGTGACCGTTATTGTTGAAAAAGCATGCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTT-------T-TT---TACCAACATGTTCTCTAACGTTAGTTATATCTATATAT---AAAAAAAACAA------CA---AAAAAACA----------AGAA-AAC----AGTG-------------GAACGCACAAGAGC-C-AATGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAATTTGTTTTTCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--TATGGATACTAAGTCTCAAA--------------TCTTTAC-AAATCAACGGACATAATTTGAATTTATCACCGGTCGCCAGAGATTTCAACAAAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAAGATC----GTG-CA-AC---TTGAATAAAAA----AAAA-GAT--------TCG-GT-GAAAA--T--ATTC--------TGTTTT------GTTTCTTTTTATTCTTTAT-ACTATTCAAA-CAT-TATAGTC-AAAG------TAATCAAA-TAGAA-AA------------------------GGGGCGTTACAAATTTTGATTAgt
gi|5 : ataAATATGTA-GTTACTCGAATGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTTGAGA------AATTTCCCGGGTTTTCCTCTTGAAAAG-T-TTTG-TACCCACATGTTCTATAACGTGAATTATAT-------T---CAAAT----AA------CA---AGAAAACAGTGGT-GT--AGAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAGC-C-ACTGGCATGGTCCAAACTGGGTGCAGTTTAAAAGAAGTTTGTTTTCCTTCGCTTCT-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA--TTTGTTCTTTACAAAATCAACGAACGTAATTTTATTTTATTACCGGTCGCCAGATATTTCAGCAGAGACCACACAACTATC--TCAAGACTTCT-CCGTAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCGTCGAAGG-CTAAAA-GATCATGCAACTTGAAT-AAAAA--AAGATTCGGTGAAAATATTCTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAATC-AAAA------TAATTAAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTACTGGGGCGTTAGAAATTTTGATTAgt
gi|6 : AAAAG-T-TCAG-TACCCACATGTTCTCTAACGTTAGTTATAT-------T---AAAAA----AG------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAGT-C-ATTGGCATGGTCCAAGCTGGTCGCAGTATACGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATG--------------AATTCTCAA-ATTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAAC--AGTCTACAAATATATC--TTATGACTTCG-CCGGAAATTCTACAGAACCAAAAGTC-CAGAGGAATGGGTTTGACGG-CTAAAA-TATCGTGAAACTTTAAT-AAAAA--TAGATTCGGTGAAAAGATTTTG--TTTGTTTCTTTGTATTCTTTAT-ACTGATCAAA-CCT-TATAATC-AAAA------TAATCAAA-TACAATAAGCAGTGCAATTCGAATGGTTgtat
gi|7 : TCTAACGCCCCACTTTTA-TTTCTCAAAAGGTTTGAAAGCAAGTTCAGAATATATGATCAATGAAG-TTT---AATATCGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAATAA--ACTGCAATCGAATTTGTA-ATTACTCGAGCGTGACCGATATTGTTGAAAA-----GCATTATGAGTGATTTTTAGACTCAAATGTTTCCCGGGTTTTTCTCTGGAAAAAATGTT-G-TGCCCACATGTTCTCTAACGTTATTTATAC-------T---AAAAA----AAACCCAACATCTATAAAACAGTTGT-GT--ATAA-TGC----GATGTATTTCTACACAAGAACGCGCAAGAAC-A-ATTGACATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTGTTCCTTCGCTTTA-TTTGTCGTTTGTGCTTACAAA--CATGGTTACTAAGTCT
gi|8 : AGTTCG-GT--GAAA-TGC----GGTGCATGTCTACATAAGAATGCGCAAGAGC-T-GTTGGCATGGTTCAAGGTGGGCGCAGTTTAAGAGAGGTTTGTTTTCCTTCACTATA-TTTATTGTTTGTGCTTACAGA--T-TG--T------TCTCAAATTCTCCATTTTTGTTCTTTAC-AAATTAACGGA--TA----------ATTACAGGTCGTCAGAGCTTTCAACAGAGACCACGAAATTGTC--TTAAGACTTGT-CCAGAAATTCTAC---------------AGACGACCTGCCTCGACGG-CCAAAA-CATCTTGCATCTTGA-------------ATTCGGTGAAAACAATTTG-TTTTGTTTATTTTTATTCTTTAC-ACTGATCAAA-CGT-TATAGTC-AAAA------TAACTGTA-T--------TA-TGCA-----AAATGTTTGCTGGGGCGTTAGACATTTTGATTAaa
gi|9 : TGTTCTTTAC-AAATTATCGGAC-------GAATT-----------------GAATTCAGTATAGGTCGC----CTGTAAGTAAAGACTTGT-CCGGAAATTCTATAGAGCCGGAAGTG-TAGACGACCTGCTTGGGCGGCCCAAAA-CATCGTGCAACTTGAAT-AAAAA--TTCATTCGGTGAAAA-ATGTTA-CTTCGTTTCTTTTTATTCTTTAT-ACTGGTCAAA-CGT-TATAGTC-AAAATACATGTAATTGAA-TAGGA-AAACAGTGCAATGCAAAATGTTTGCTGGGGCGTTAGAAATTTTgta
Alignments
lowQualScore : 11111 11111 111111 111 111111111111 222222 1111 111111
lowQualScore : 4 4 1 1 4 777 1 777 55555 5 22222 444444 0 2 55 4 777 0 777777777777 9999 000000 777 3 55 3 8888 4 4 4 66 99 4 66 4 3 55 0 4 3 4 4 4 1111 1 0 66 1 3 4 2 4 3 000000 2 3 3 3 3 22
lowQualScore : . . . . . ... . ... ..... . ..... ...... . . .. . ... . ............ .... ...... ... . .. . .... . . . .. .. . .. . . .. . . . . . . .... . . .. . . . . . . ...... . . . . . ..
lowQualScore : 0 0 0 0 0 000 1 888 99999 7 55555 444444 2 1 33 4 999 7 111111111111 4444 000000 000 6 00 6 5555 0 0 4 11 11 6 44 0 5 55 8 0 6 0 4 0 4444 3 9 44 1 6 0 3 0 6 555555 5 6 6 4 6 11
consensus : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
Reference ( family-967 ) : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
gi|1 : CTGGTCAAAATTGCTAACGCCA-ACTTTTA-TTTC-CAAA-GGTTTGAAATCTATTGCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCTTTTTACAATGCTGAACTGTGTAGGAC---AAA-CA--ATTGCAATCGAAATTGTAAGTTACTCGGGCGTGACGGTTATTGTTGAAAA-----GGATGATGAGCGATTTCGAGA------TGTTTCTCGGGTTT-CCTCTTGATAAA-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAA----AA------CA---AGAAAACAGTTGT-GTGTATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAGT-CTATTGGCAGGGTT-AATATTGGCACAGTTTA-GAAAATTTGGTTTTCCTTCGCTTTCTTTTGTTTTTTGTGCTTACAAA--TATGGGTACTAAGT-TCCAATTCTCAA-TTTTGTTTTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGCCAACAAAACTATC--TTACGA-TTCTCCCGGAAATTCTACAG-ACCGGAAGTGAGAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAATAAAAAA--TAGATTAGGTGAAAATG-TTTG-TTTTGTTTCTACGTATTC-TTATAACTGATCAAA-CTT-TATAGTCAAAAA------TAATCAAATTAGAA-AACCAGTGCAATTCG-AAGGTTTATTGGGGCGTTAGAAA-TTTGATTA
gi|10 : aCTGGTGAAAATTTCTAATACCCCACTTTCA-TTTCTCAAA-GGTTTTAAAACTATTTCAGAATTTATTATCAATGGGC-TTT---AATATTGTTAGCCTTTTACAA------------------------------TTGCAATAAAATTTGTA-GTTACACAACCGTAACCGTTATTGTTGAAAG-----GCGTGATGAGCGATTTCGAGA------TGTTATACGGGTTTTTCCCTTGAAAGG-T-TTAG-TATCCGCgt
gi|11 : ataCTTCAAT-AAAAA--CTGATTCGGTGAAAACATTTTG-TTT-----ATTTTTATTCCTCAT-ACTGATCAAA-CGT-TATAGTG-AAAA------TAATTGAA-CAGAA-ACACAGTGCAATGCAAAGTGTTTGCTGGGGCGTTAAAGATTTTGATTA
gi|12 : tgtacatgtatgtgtatgtcgacgtaatttgtgacaaagcgAA-TTTTGTTCTTTAC-AAATCAACTGACGTATTTTCAATTTAGTACCGGTCGCCAGAGATTTAAACAGATACCACAAAACTATC--TTACGATTTAT-CCGCAAATTCTACGGAACTGGAAGTG-TAGATGAATTGCCTCGACGG-CTA
gi|13 : CTGGTCAAAATATCTTACTCCCCACTTTTA-TTTGTCAAA-GGTTTGAAATCTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGTACTGTTTAGGAC---AAAAC---ATTGTAATCGAATTT
gi|14 : ataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACATTGCTGAACTGTTTACGCC---AAAACA--ATTGCAGT
gi|15 : ataTTCCTTCTGCTCTTTAT-ACTGATCAAAACATATAT-GCC-A--------------------GAA-CAAC---GCAATTCAAAATGTTTGGTGTGGCGTTAGAAATTTTGATTA
gi|16 : tctacgcaattcaaattcataagaagttatcgataaaaacC-AAATCAACGGACGTAATTTGAATTTATTATCGGTCGCTAGATATTTCAAAAGAGACCACAAAACTATC--TTAATACTTCT-CCGGAAATTTTACTGAACCGGAAGTG-TACACAAATTGCCTCGACg
gi|17 : AAA-----GCATGATGAGCGATTTCGAGA------TTTTTCACGGGTTTTCCTCTTGAAAAG-T-TT-ATTACCCACGTGTTCTCTAGAGTTATTTATGT-------TAGAAAAAA----AA------CA---AGAAAACAACAAT-AT--ATAA-T
gi|18 : ACAGAACAGAAAATG-TGGACGACCTACCTTGATGG-CCAAAGCGA-CGTGCAGGTTAAAT-AAAAT--T--ATTC-GCGAAAATATTTTGTTTTTGTTTCTTTTTATTCTTTAT-ACTAATCA
gi|19 : TCTATCTTTAATCGTTT-------A---CGAAA----AA------CA----TAAAATAACTGGAGT--ATAA-TGC----GTTGCATGATTGTATAAGAATGTGCAAGAGCTT-ATTGTTATAGT
gi|2 : taCTGGTCAAAATTGCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAATCTATTTCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCTTTTTACAATGCTGAACTGTGTAGGAC---AAAACA--ATTGCAATCGAAATTGTA-GTTACTCGAGCGTGACGGTTATTGTTGAAAA-----GGATGATGAGCGATTTCGAGA------TGTTTCTCGGGTTTTCCTCTTGATAAA-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAGT-C-ATTGGCATGGTTAAAATTGGGCACAGTTTAAGAAAAGTTGGTTTTCCTTCGCTTCT-TTTGTTGTTTGTGCTTACAAA--TATGGGTACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGACCACAAAACTATC--TTACGATTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTAGGTGAAAATAGTTTG-TTTTGTTTCTACGTATTCTTTAT-ACTGATCAAA-CTT-TATAGTC-AAAA------TAATCAAA-TAGAA-AACCAGTGCAATTCGAAAGGTTTATTGGGGCGTTAGAAATTTTGATTAtgacgcgtgttggtatag
gi|20 : ------CA---AGAAAACAGTTGT-GT--ATAAATGC----GGTATATGTCTACACAACAACGCGCAAGAGC-C-ATTGTCATGGTCCAAGCTAGGCGCAGTTTAAGAGAAGTTTGTTTTCCT
gi|21 : -TTTCTCAAA-AGTTTGATATTTTTTTCAGAATTTATGATCAATGGACTTTT---ATTACTGTTTGCTTTTTAAAATGCTGAACAGTTACGGCC---AA
gi|22 : TGGTCAAAATTTGTAACGTACAATTTTT----TCTGAAA-CCTTTGATTACTCTTTCTTAATTTCTGATCAATGAAT-TTT---GATATTGTTTGtaaa
gi|23 : tataaTGTTTTCCCTCACTATA-TTTGATGTTTATGCTTACAAATTCACAG-T------TCTCAGATTCTCAA-TTCT
gi|24 : AGTC-AAAA------TAATCAAA-TAG-A-AAACAGTGTAATTTGA-------------GTGTTAGAAATTTTGATTA
gi|3 : CTTGTCAAAAGTTCTAACGCCCCACTTTTAGTTTCTTCAA-GGTTTAAAAACTATTTCA-AATGTATGATCAATGGAC-TTT---AATATTGCTTGCCTTTTACAATGCTGAACTATTTAGGCCCAAAAAACCCCACTCCAATCGAATTTGCA-TTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGGTGAGCGATTTCGAGA------TGTTTTCCGGGGGTTCC---------------------CTACATGTTCTCTAACATTAGTTATAT-------T---TAAAA----AAAAAC--CA---AGAAAACAGTTGT-GT--ATAA-TGCATGCGGTGCATGTCTACACAAAAACGCACAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAG--------------CTTTA-TTTGATGTTTGTGCTCACAAA--CATGGATACTAAGTCTTAAATTCTCAA-TTTTGTTCTTTGC-AATTCAACGGATGTATTTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGCGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATGGCCTCGACGG-TTAAAA-GATCATGCCACTTGAA--AAAAATGTAGATTCGGTGAAAATATTTTC-ATTTGTTTCTTTGTATTCTTT-T-ACTTATCAAA-CAT-TATAGTC-AAAA------TAATCAAA-TAGAA-AAACAGTGCAATTCGAAAGG--TACTGGGGCGTTAGAAATTTTGATTA
gi|4 : atataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTTTAAAATATTGTTTCTGTTTTACATTGCTGAACTGTTTAGGCC---AACA-A--ATTGCAATCGAATATGTA-GTTATGCGAGCGTGACCGTTATTGTTGAAAAAGCATGCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTT-------T-TT---TACCAACATGTTCTCTAACGTTAGTTATATCTATATAT---AAAAAAAACAA------CA---AAAAAACA----------AGAA-AAC----AGTG-------------GAACGCACAAGAGC-C-AATGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAATTTGTTTTTCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--TATGGATACTAAGTCTCAAA--------------TCTTTAC-AAATCAACGGACATAATTTGAATTTATCACCGGTCGCCAGAGATTTCAACAAAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAAGATC----GTG-CA-AC---TTGAATAAAAA----AAAA-GAT--------TCG-GT-GAAAA--T--ATTC--------TGTTTT------GTTTCTTTTTATTCTTTAT-ACTATTCAAA-CAT-TATAGTC-AAAG------TAATCAAA-TAGAA-AA------------------------GGGGCGTTACAAATTTTGATTAgt
gi|5 : ataAATATGTA-GTTACTCGAATGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTTGAGA------AATTTCCCGGGTTTTCCTCTTGAAAAG-T-TTTG-TACCCACATGTTCTATAACGTGAATTATAT-------T---CAAAT----AA------CA---AGAAAACAGTGGT-GT--AGAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAGC-C-ACTGGCATGGTCCAAACTGGGTGCAGTTTAAAAGAAGTTTGTTTTCCTTCGCTTCT-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA--TTTGTTCTTTACAAAATCAACGAACGTAATTTTATTTTATTACCGGTCGCCAGATATTTCAGCAGAGACCACACAACTATC--TCAAGACTTCT-CCGTAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCGTCGAAGG-CTAAAA-GATCATGCAACTTGAAT-AAAAA--AAGATTCGGTGAAAATATTCTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAATC-AAAA------TAATTAAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTACTGGGGCGTTAGAAATTTTGATTAgt
gi|6 : AAAAG-T-TCAG-TACCCACATGTTCTCTAACGTTAGTTATAT-------T---AAAAA----AG------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAGT-C-ATTGGCATGGTCCAAGCTGGTCGCAGTATACGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATG--------------AATTCTCAA-ATTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAAC--AGTCTACAAATATATC--TTATGACTTCG-CCGGAAATTCTACAGAACCAAAAGTC-CAGAGGAATGGGTTTGACGG-CTAAAA-TATCGTGAAACTTTAAT-AAAAA--TAGATTCGGTGAAAAGATTTTG--TTTGTTTCTTTGTATTCTTTAT-ACTGATCAAA-CCT-TATAATC-AAAA------TAATCAAA-TACAATAAGCAGTGCAATTCGAATGGTTgtat
gi|7 : TCTAACGCCCCACTTTTA-TTTCTCAAAAGGTTTGAAAGCAAGTTCAGAATATATGATCAATGAAG-TTT---AATATCGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAATAA--ACTGCAATCGAATTTGTA-ATTACTCGAGCGTGACCGATATTGTTGAAAA-----GCATTATGAGTGATTTTTAGACTCAAATGTTTCCCGGGTTTTTCTCTGGAAAAAATGTT-G-TGCCCACATGTTCTCTAACGTTATTTATAC-------T---AAAAA----AAACCCAACATCTATAAAACAGTTGT-GT--ATAA-TGC----GATGTATTTCTACACAAGAACGCGCAAGAAC-A-ATTGACATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTGTTCCTTCGCTTTA-TTTGTCGTTTGTGCTTACAAA--CATGGTTACTAAGTCT
gi|8 : AGTTCG-GT--GAAA-TGC----GGTGCATGTCTACATAAGAATGCGCAAGAGC-T-GTTGGCATGGTTCAAGGTGGGCGCAGTTTAAGAGAGGTTTGTTTTCCTTCACTATA-TTTATTGTTTGTGCTTACAGA--T-TG--T------TCTCAAATTCTCCATTTTTGTTCTTTAC-AAATTAACGGA--TA----------ATTACAGGTCGTCAGAGCTTTCAACAGAGACCACGAAATTGTC--TTAAGACTTGT-CCAGAAATTCTAC---------------AGACGACCTGCCTCGACGG-CCAAAA-CATCTTGCATCTTGA-------------ATTCGGTGAAAACAATTTG-TTTTGTTTATTTTTATTCTTTAC-ACTGATCAAA-CGT-TATAGTC-AAAA------TAACTGTA-T--------TA-TGCA-----AAATGTTTGCTGGGGCGTTAGACATTTTGATTAaa
gi|9 : TGTTCTTTAC-AAATTATCGGAC-------GAATT-----------------GAATTCAGTATAGGTCGC----CTGTAAGTAAAGACTTGT-CCGGAAATTCTATAGAGCCGGAAGTG-TAGACGACCTGCTTGGGCGGCCCAAAA-CATCGTGCAACTTGAAT-AAAAA--TTCATTCGGTGAAAA-ATGTTA-CTTCGTTTCTTTTTATTCTTTAT-ACTGGTCAAA-CGT-TATAGTC-AAAATACATGTAATTGAA-TAGGA-AAACAGTGCAATGCAAAATGTTTGCTGGGGCGTTAGAAATTTTgta
blockSeqs : G A A T T TAA A CAA ACCCC . AGCAT CTCAAA A AA G AG CTATATATA AAAC ACCCAA TCT A . A ATGC T . . TT GG A TT A T AG . . C C . TGTA C TT T . A G A . TACATG G . T A T GC
blockSeqs : . . T A . . C . ACA . . . A G . AT TAGAA . AAAC . . . . . . . . . GA A T . A . . . . . . CT T T C . . A . . . A . . A T GG
blockSeqs : . . A A . . A . ACA . . . T G . TG AC . . . . . . . . . . . GA A T . A . . . . . . TA T T T . . T . . . A . . C G AT
blockSeqs : . . T G . . C . TAA . . . A A . AG TC . . . . . . . . . . . GA A T . T . . . . . . AA T A G . . A . . . A . . A G AC
blockSeqs : . . T T . . C . AC . . . A G . G TT . . . . . . . . . . . GT A T . A . . . . . . TA T T G . . A . . . A . . A G AC
blockSeqs : . . A T . . C . AA . . . A G . G TC . . . . . . . . . . . G . A . A . . . . . . TT T T T . . G . . . A . . A G GC
blockSeqs : . . A G . . C . . . . . . . . TA . . . . . . . . . . . . . . . A . . . . . . T G C T . . C . . . A . . G T GC
blockSeqs : . . A A . . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . T C . G . . G . . . G . . A T .
blockSeqs : . . G A . . . . . . . . . . . . . . . . . . . . T . . G . . . G . . . . .
blockSeqs : . . . . T . . . . . . . .
blockSeqCons : ACA** G** **
originalCons : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
finalCons : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TTG--TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
Alignments
lowQualScore : 11111 11111 111111 111 111111111111 222222 1111 111111
lowQualScore : 4 4 1 1 4 777 1 777 55555 5 22222 444444 0 2 55 4 777 0 777777777777 9999 000000 777 3 55 3 8888 4 4 4 66 99 4 66 4 3 55 0 4 3 4 4 4 1111 1 0 66 1 3 4 2 4 3 000000 2 3 3 3 3 22
lowQualScore : . . . . . ... . ... ..... . ..... ...... . . .. . ... . ............ .... ...... ... . .. . .... . . . .. .. . .. . . .. . . . . . . .... . . .. . . . . . . ...... . . . . . ..
lowQualScore : 0 0 0 0 0 000 1 888 99999 7 55555 444444 2 1 33 4 999 7 111111111111 4444 000000 000 6 00 6 5555 0 0 4 11 11 6 44 0 5 55 8 0 6 0 4 0 4444 3 9 44 1 6 0 3 0 6 555555 5 6 6 4 6 11
consensus : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
Reference ( family-967 ) : CTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAANCTATTTCAGAATNTATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAAACA--ATTGCAATCGAATTTGTA-GTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTTGAAAAG-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---NAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCGCAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTCGGTGAAAATATTTTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAGTC-AAAA------TAATCGAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTGCTGGGGCGTTAGAAATTTTGATTA
gi|1 : CTGGTCAAAATTGCTAACGCCA-ACTTTTA-TTTC-CAAA-GGTTTGAAATCTATTGCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCTTTTTACAATGCTGAACTGTGTAGGAC---AAA-CA--ATTGCAATCGAAATTGTAAGTTACTCGGGCGTGACGGTTATTGTTGAAAA-----GGATGATGAGCGATTTCGAGA------TGTTTCTCGGGTTT-CCTCTTGATAAA-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAA----AA------CA---AGAAAACAGTTGT-GTGTATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAGT-CTATTGGCAGGGTT-AATATTGGCACAGTTTA-GAAAATTTGGTTTTCCTTCGCTTTCTTTTGTTTTTTGTGCTTACAAA--TATGGGTACTAAGT-TCCAATTCTCAA-TTTTGTTTTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGCCAACAAAACTATC--TTACGA-TTCTCCCGGAAATTCTACAG-ACCGGAAGTGAGAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAATAAAAAA--TAGATTAGGTGAAAATG-TTTG-TTTTGTTTCTACGTATTC-TTATAACTGATCAAA-CTT-TATAGTCAAAAA------TAATCAAATTAGAA-AACCAGTGCAATTCG-AAGGTTTATTGGGGCGTTAGAAA-TTTGATTA
gi|10 : aCTGGTGAAAATTTCTAATACCCCACTTTCA-TTTCTCAAA-GGTTTTAAAACTATTTCAGAATTTATTATCAATGGGC-TTT---AATATTGTTAGCCTTTTACAA------------------------------TTGCAATAAAATTTGTA-GTTACACAACCGTAACCGTTATTGTTGAAAG-----GCGTGATGAGCGATTTCGAGA------TGTTATACGGGTTTTTCCCTTGAAAGG-T-TTAG-TATCCGCgt
gi|11 : ataCTTCAAT-AAAAA--CTGATTCGGTGAAAACATTTTG-TTT-----ATTTTTATTCCTCAT-ACTGATCAAA-CGT-TATAGTG-AAAA------TAATTGAA-CAGAA-ACACAGTGCAATGCAAAGTGTTTGCTGGGGCGTTAAAGATTTTGATTA
gi|12 : tgtacatgtatgtgtatgtcgacgtaatttgtgacaaagcgAA-TTTTGTTCTTTAC-AAATCAACTGACGTATTTTCAATTTAGTACCGGTCGCCAGAGATTTAAACAGATACCACAAAACTATC--TTACGATTTAT-CCGCAAATTCTACGGAACTGGAAGTG-TAGATGAATTGCCTCGACGG-CTA
gi|13 : CTGGTCAAAATATCTTACTCCCCACTTTTA-TTTGTCAAA-GGTTTGAAATCTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACAATGCTGTACTGTTTAGGAC---AAAAC---ATTGTAATCGAATTT
gi|14 : ataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTT---AATATTGTTTGCCTTTTACATTGCTGAACTGTTTACGCC---AAAACA--ATTGCAGT
gi|15 : ataTTCCTTCTGCTCTTTAT-ACTGATCAAAACATATAT-GCC-A--------------------GAA-CAAC---GCAATTCAAAATGTTTGGTGTGGCGTTAGAAATTTTGATTA
gi|16 : tctacgcaattcaaattcataagaagttatcgataaaaacC-AAATCAACGGACGTAATTTGAATTTATTATCGGTCGCTAGATATTTCAAAAGAGACCACAAAACTATC--TTAATACTTCT-CCGGAAATTTTACTGAACCGGAAGTG-TACACAAATTGCCTCGACg
gi|17 : AAA-----GCATGATGAGCGATTTCGAGA------TTTTTCACGGGTTTTCCTCTTGAAAAG-T-TT-ATTACCCACGTGTTCTCTAGAGTTATTTATGT-------TAGAAAAAA----AA------CA---AGAAAACAACAAT-AT--ATAA-T
gi|18 : ACAGAACAGAAAATG-TGGACGACCTACCTTGATGG-CCAAAGCGA-CGTGCAGGTTAAAT-AAAAT--T--ATTC-GCGAAAATATTTTGTTTTTGTTTCTTTTTATTCTTTAT-ACTAATCA
gi|19 : TCTATCTTTAATCGTTT-------A---CGAAA----AA------CA----TAAAATAACTGGAGT--ATAA-TGC----GTTGCATGATTGTATAAGAATGTGCAAGAGCTT-ATTGTTATAGT
gi|2 : taCTGGTCAAAATTGCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAATCTATTTCAGAATGTATGATCAATGGAC-TTT---AATATTGTTTGCTTTTTACAATGCTGAACTGTGTAGGAC---AAAACA--ATTGCAATCGAAATTGTA-GTTACTCGAGCGTGACGGTTATTGTTGAAAA-----GGATGATGAGCGATTTCGAGA------TGTTTCTCGGGTTTTCCTCTTGATAAA-T-TT-G-TACCCGCATGTTCTCTAACGTTAGTTATAT-------T---CAAAA----AA------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAATGTGCAAGAGT-C-ATTGGCATGGTTAAAATTGGGCACAGTTTAAGAAAAGTTGGTTTTCCTTCGCTTCT-TTTGTTGTTTGTGCTTACAAA--TATGGGTACTAAGTCTCAAATTCTCAA-TTTTGTTCTTTAC-AAATCAACTGACGTAATTTGAATTTATTACCGGCCGCCAGAGATTTAAACAGAGACCACAAAACTATC--TTACGATTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGATGAATTGCCTCGACGG-CTAAAA-GATCGTGCAACTTGAAT-AAAAA--TAGATTAGGTGAAAATAGTTTG-TTTTGTTTCTACGTATTCTTTAT-ACTGATCAAA-CTT-TATAGTC-AAAA------TAATCAAA-TAGAA-AACCAGTGCAATTCGAAAGGTTTATTGGGGCGTTAGAAATTTTGATTAtgacgcgtgttggtatag
gi|20 : ------CA---AGAAAACAGTTGT-GT--ATAAATGC----GGTATATGTCTACACAACAACGCGCAAGAGC-C-ATTGTCATGGTCCAAGCTAGGCGCAGTTTAAGAGAAGTTTGTTTTCCT
gi|21 : -TTTCTCAAA-AGTTTGATATTTTTTTCAGAATTTATGATCAATGGACTTTT---ATTACTGTTTGCTTTTTAAAATGCTGAACAGTTACGGCC---AA
gi|22 : TGGTCAAAATTTGTAACGTACAATTTTT----TCTGAAA-CCTTTGATTACTCTTTCTTAATTTCTGATCAATGAAT-TTT---GATATTGTTTGtaaa
gi|23 : tataaTGTTTTCCCTCACTATA-TTTGATGTTTATGCTTACAAATTCACAG-T------TCTCAGATTCTCAA-TTCT
gi|24 : AGTC-AAAA------TAATCAAA-TAG-A-AAACAGTGTAATTTGA-------------GTGTTAGAAATTTTGATTA
gi|3 : CTTGTCAAAAGTTCTAACGCCCCACTTTTAGTTTCTTCAA-GGTTTAAAAACTATTTCA-AATGTATGATCAATGGAC-TTT---AATATTGCTTGCCTTTTACAATGCTGAACTATTTAGGCCCAAAAAACCCCACTCCAATCGAATTTGCA-TTTACTCGAGCGTGACCGTTATTGTTGAAAA-----GCATGGTGAGCGATTTCGAGA------TGTTTTCCGGGGGTTCC---------------------CTACATGTTCTCTAACATTAGTTATAT-------T---TAAAA----AAAAAC--CA---AGAAAACAGTTGT-GT--ATAA-TGCATGCGGTGCATGTCTACACAAAAACGCACAAGAGC-C-ATTGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAG--------------CTTTA-TTTGATGTTTGTGCTCACAAA--CATGGATACTAAGTCTTAAATTCTCAA-TTTTGTTCTTTGC-AATTCAACGGATGTATTTTGAATTTATTACCGGTCGCCAGAGATTTCAACAGCGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAGAACCGGAAGTG-TAGACGAATGGCCTCGACGG-TTAAAA-GATCATGCCACTTGAA--AAAAATGTAGATTCGGTGAAAATATTTTC-ATTTGTTTCTTTGTATTCTTT-T-ACTTATCAAA-CAT-TATAGTC-AAAA------TAATCAAA-TAGAA-AAACAGTGCAATTCGAAAGG--TACTGGGGCGTTAGAAATTTTGATTA
gi|4 : atataCTGGTCAAAATTTCTAACGCCCCACTTTTA-TTTCTCAAA-GGTTTGAAAACTATTTCAGAATATATGATCAATGGAC-TTTTAAAATATTGTTTCTGTTTTACATTGCTGAACTGTTTAGGCC---AACA-A--ATTGCAATCGAATATGTA-GTTATGCGAGCGTGACCGTTATTGTTGAAAAAGCATGCATGATGAGCGATTTCGAGA------TGTTTCCCGGGTTTTCCTCTT-------T-TT---TACCAACATGTTCTCTAACGTTAGTTATATCTATATAT---AAAAAAAACAA------CA---AAAAAACA----------AGAA-AAC----AGTG-------------GAACGCACAAGAGC-C-AATGGCATGGTCCAAGCTGGGCGCAGTTTAAAAGAAATTTGTTTTTCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--TATGGATACTAAGTCTCAAA--------------TCTTTAC-AAATCAACGGACATAATTTGAATTTATCACCGGTCGCCAGAGATTTCAACAAAGACCACAAAACTATC--TTAAGACTTCT-CCGGAAATTCTACAAGATC----GTG-CA-AC---TTGAATAAAAA----AAAA-GAT--------TCG-GT-GAAAA--T--ATTC--------TGTTTT------GTTTCTTTTTATTCTTTAT-ACTATTCAAA-CAT-TATAGTC-AAAG------TAATCAAA-TAGAA-AA------------------------GGGGCGTTACAAATTTTGATTAgt
gi|5 : ataAATATGTA-GTTACTCGAATGTGACCGTTATTGTTGAAAA-----GCATGATGAGCGATTTTGAGA------AATTTCCCGGGTTTTCCTCTTGAAAAG-T-TTTG-TACCCACATGTTCTATAACGTGAATTATAT-------T---CAAAT----AA------CA---AGAAAACAGTGGT-GT--AGAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAGC-C-ACTGGCATGGTCCAAACTGGGTGCAGTTTAAAAGAAGTTTGTTTTCCTTCGCTTCT-TTTGTTGTTTGTGCTTACAAA--CATGGATACTAAGTCTCAAATTCTCAA--TTTGTTCTTTACAAAATCAACGAACGTAATTTTATTTTATTACCGGTCGCCAGATATTTCAGCAGAGACCACACAACTATC--TCAAGACTTCT-CCGTAAATTCTACAGAACCGGAAGTG-TAGACGAATTGCGTCGAAGG-CTAAAA-GATCATGCAACTTGAAT-AAAAA--AAGATTCGGTGAAAATATTCTG-TTTTGTTTCTTTTTATTCTTTAT-ACTGATCAAA-CGT-TATAATC-AAAA------TAATTAAA-TAGAA-AAACAGTGCAATTCGAAAGGTTTACTGGGGCGTTAGAAATTTTGATTAgt
gi|6 : AAAAG-T-TCAG-TACCCACATGTTCTCTAACGTTAGTTATAT-------T---AAAAA----AG------CA---AGAAAACAGTTGT-GT--ATAA-TGC----GGTGCATGTCTACACAAGAACGCACAAGAGT-C-ATTGGCATGGTCCAAGCTGGTCGCAGTATACGAGAAGTTTGTTTTCCTTCGCTTTA-TTTGTTGTTTGTGCTTACAAA--CATG--------------AATTCTCAA-ATTTGTTCTTTAC-AAATCAACGGACGTAATTTGAATTTATTACCGGTCGCCAGAGATTTCAAC--AGTCTACAAATATATC--TTATGACTTCG-CCGGAAATTCTACAGAACCAAAAGTC-CAGAGGAATGGGTTTGACGG-CTAAAA-TATCGTGAAACTTTAAT-AAAAA--TAGATTCGGTGAAAAGATTTTG--TTTGTTTCTTTGTATTCTTTAT-ACTGATCAAA-CCT-TATAATC-AAAA------TAATCAAA-TACAATAAGCAGTGCAATTCGAATGGTTgtat
gi|7 : TCTAACGCCCCACTTTTA-TTTCTCAAAAGGTTTGAAAGCAAGTTCAGAATATATGATCAATGAAG-TTT---AATATCGTTTGCCTTTTACAATGCTGAACTGTTTAGGCC---AAATAA--ACTGCAATCGAATTTGTA-ATTACTCGAGCGTGACCGATATTGTTGAAAA-----GCATTATGAGTGATTTTTAGACTCAAATGTTTCCCGGGTTTTTCTCTGGAAAAAATGTT-G-TGCCCACATGTTCTCTAACGTTATTTATAC-------T---AAAAA----AAACCCAACATCTATAAAACAGTTGT-GT--ATAA-TGC----GATGTATTTCTACACAAGAACGCGCAAGAAC-A-ATTGACATGGTCCAAGCTGGGCGCAGTTTAAGAGAAGTTTGTGTTCCTTCGCTTTA-TTTGTCGTTTGTGCTTACAAA--CATGGTTACTAAGTCT
gi|8 : AGTTCG-GT--GAAA-TGC----GGTGCATGTCTACATAAGAATGCGCAAGAGC-T-GTTGGCATGGTTCAAGGTGGGCGCAGTTTAAGAGAGGTTTGTTTTCCTTCACTATA-TTTATTGTTTGTGCTTACAGA--T-TG--T------TCTCAAATTCTCCATTTTTGTTCTTTAC-AAATTAACGGA--TA----------ATTACAGGTCGTCAGAGCTTTCAACAGAGACCACGAAATTGTC--TTAAGACTTGT-CCAGAAATTCTAC---------------AGACGACCTGCCTCGACGG-CCAAAA-CATCTTGCATCTTGA-------------ATTCGGTGAAAACAATTTG-TTTTGTTTATTTTTATTCTTTAC-ACTGATCAAA-CGT-TATAGTC-AAAA------TAACTGTA-T--------TA-TGCA-----AAATGTTTGCTGGGGCGTTAGACATTTTGATTAaa
gi|9 : TGTTCTTTAC-AAATTATCGGAC-------GAATT-----------------GAATTCAGTATAGGTCGC----CTGTAAGTAAAGACTTGT-CCGGAAATTCTATAGAGCCGGAAGTG-TAGACGACCTGCTTGGGCGGCCCAAAA-CATCGTGCAACTTGAAT-AAAAA--TTCATTCGGTGAAAA-ATGTTA-CTTCGTTTCTTTTTATTCTTTAT-ACTGGTCAAA-CGT-TATAGTC-AAAATACATGTAATTGAA-TAGGA-AAACAGTGCAATGCAAAATGTTTGCTGGGGCGTTAGAAATTTTgta