lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 11 1111111 5555555555555555555555555555555555555555555555555555555555555555555555555 4444444444 1 333333333333333 444444444444444444444 22 1111 3333333 11 33333333333333333333333333333 3333333333333333333333333333333333333333333333333333333333 11111111 1111 111
lowQualScore : 3 3 3 3 99999 3 3 3 0 44 1 1111111 4 66 00 4 66 3 4 5 2 5 99 66 9999999 0000000000000000000000000000000000000000000000000000000000000000000000000 5 1111111111 1 5 333333333333333 0 333333333333333333333 888 5 888 66 0000 66 0000000 55 5 88 66666666666666666666666666666 8888888888888888888888888888888888888888888888888888888888 5 1 3 0 22222222 999 44 0 0000 999 4 3 3 555 77 555 555
lowQualScore : . . . . ..... . . . . .. . ....... . .. .. . .. . . . . . .. .. ....... ......................................................................... . .......... . . ............... . ..................... ... . ... .. .... .. ....... .. . .. ............................. .......................................................... . . . . ........ ... .. . .... ... . . . ... .. ... ...
lowQualScore : 6 6 6 6 11111 6 6 6 1 66 5 0000000 4 11 99 4 11 7 4 0 2 0 88 11 6666666 8888888888888888888888888888888888888888888888888888888888888888888888888 7 7777777777 7 0 000000000000000 3 111111111111111111111 111 0 888 11 6666 99 6666666 22 6 11 11111111111111111111111111111 7777777777777777777777777777777777777777777777777777777777 6 0 3 4 11111111 222 66 5 4444 999 2 3 3 888 99 444 444
consensus : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATCAGGCAAAATC----C-ACTGT--TTC-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG--AAAAAAAA---TCACAT---------T-----CATG--CA---GG-------------TTCATA-----------T--------------TTCAA-TACAGAAAAAA---AATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTATT-------CNTAN---------ATTGG-TCCTA---AGTTGTGTT----ACA--TACA-------AT-TTNTTTTCTTTTA---ATA---ANTA----------------TTAATAAT-----A--AT-----TAGT-----A-----AT--N-------T---T---TN-CC---GGAAAAAGTTTC-ATTATA--------CATGTATTG---A--TCGCTCACG----ATCG-C-GGACAATGACG-GA-GCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
Reference ( gi|7 ) : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATCAGACAAAATT----C-ACTGT--TTT-G-T--GGATATGT-AAA-TTCATG-GATG-CCCACCATG--AAAAAAAG---TCACAT---------T-----CAC---CA---GG-------------TTCATC-----------T--------------TTCAA-TACAGAAAAAT---ATTCCCTATGTGAAATCTGAGCCCGCTTTAAA---------AAAGTTATT-------CATAT---------ACTGG-TCCTA---AGAGGTGTT----ACA--TACA-------AT-TTTTTTTCGTTTA---ATG---AATA----------------TTAATAAT-----A--AT-----TAGT-----A-----AT--T-------T---T---TT-CT---GGGAAAAATTTC-ATTATA--------CATGTATTG---A--TTGCTCACG----ATCG-A-GGACAATGATG-GA-GCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
gi|6 : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATCAGACAAAATC----C-ACTAT--TTT-G-T--GCATACGT-AAA-GTCGTG-GATG-TCCACCATG--AAGAA----------AT---------G-----CA------------------------TTCATA-----------T--------------TTCAA-TACCAAAAAA------TCCGTATGTGAAATCCGAGCACGATTTAAACTTTTTTTCAATGATATG-------TATGT---------A---A-ACATATATGGAAGTGTTTTTAATT--TATA-------AT-GTTTTTTTATTTCTTTACGTTTAATA----------------CTAA-AAT--------AT-------GT-----T-----AT--G-------T---T---TTACT---TGAAAAAAATTC-ATT-TA--------CATGTATAA---AAGTTG---ATG----ATTG-G-GG-----GATG-AA-ACAA----AA--GAG--AAATC---TTTTATCAG---AG-----AAATTTGGATGAACATT
gi|3 : aaTGTGGTTT-CA-TCAGT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGCATC--------------C-ACTGT--TTTTG-T--GGATACGT-AAA-TTCGCG-GATG-TCCACCATG--AAAAAGAA---TCACATTGGTTTGTCT-----CATG--CA------------------TTTATA-----------T--------------TTCAA-TATAGAAAAA----AATCCGTATGTGAAATCCGAGTCAGATTTAAA---------Atgatttttatggttgagctcttagacaaaaccccaaaaatgtgttgttccaacgaatatgataaacaac
gi|4 : taTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATCAGGCAAAATC----C-A---------------------GT-----TTCATG-GATG-CCTACCATG--AAAAAAAA-----AAAA---------T-----CACGTGCA---GA-------------T--ATA-----------T--------------TTCAA-TATAGAAAAA----AATCTGTATGTGAAATCTGAGCTCGATTTAAA---------AG---TATT-------CCTAA---------ATTGA-AAATA---AAA----TT----ACATGTACAGCATATTAT-TTCTTTTT-TTTATATATA---ATTA----------------TTAATAAT-----A--tcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|14 : acTGTGGCTT-CA-TTAAT-ATTCG-TG-----GAC-AT-CAG-TTTTCCTGGATCAGGCAAAATC----C-ACTGT--TTC-G-T--GGATATGT-AAA-TTCATG-GGTA-CCCACCATGAAAAAAAAAG---TCACTT---------T----------------GG-------------TTCATC-----------tctttgtaaacatatatcgaaaacatattctgattaataatgtttaatccctctattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|1 : cTGTGGTTTTCA-TCAATTATTCG-TG-------C-AT-CAAATTTTCGTG-AT-AGGCAAA-TC----C-ACTGT--TTTCG-TTTGGTAACGT-AAAATTCGTGAGATTTCCCACCATG--AAAAAAAAAAATCACAT---------TGCGTTCATG--CAATCGG-------------TACGTC-----------TCTTGCATTTAGATTTTCAAATGCAGAAAAATCAAATTCG-TATGTGAAATCCTAGCCCGATTT-GA---------TAAGCTATTTCTGTTACATATCAAATATCAATTAGTTCCTA---AGTTGTGTT----ACC--TATA-------AT-TTTTTCT--TTTA---ATG---AA-A----------------TTTATAAT-----A--A------TAAT-----------AT--T-------G---T---TT-TT---GGTAAAAgattgaaacatctcatgcattgtttcaatacaga
gi|5 : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATCAGAAAAAGTC----C-ACTGT--TTC-G-T--GGATATAT-AAA-TAGGTG-AAT-------TATA--ATAACA------CACAT---------T-----------------G-------------TTTGTCTCGTGTATGTAT--------------TTCGA-TACAGGAAAAA---AATCCGTATGAGAAATCCTAG-CCGATTT------------AAAGTTATT-------CCCAA---------ACTGcaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|2 : aTGTGGTTT-CA-TCAAT-ATTCG-TGCACGTGGC-AT-AAA-TTTTCGTGGATAAGGCAAA--T----CGACGGT--TTC-GCT--AGATACGTAAAA-TTCG-G-GATA-CCCACCATG--AAAAAAAA---TCATGT---------T-----aaaatcaaattacagattgacgacaattggaaatacattttcggtaacagtcctaagttgtgttgcatataatttattttctattagtaaataataatagatatgttttttaaaacagtattaatgcctcaatcgttatgttaccgaaaaatgcattatacatgtatgaccgctcatgatcgcggacaatgacggagaaagatcaggataattttctatcagaagcaccaaacttcaatgaacatttt
gi|1 : cTGGTTT-CA-TCATT-ATTCGTTG-----AAC-AT-C-A-TTTTCGTGtgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|16 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatTGGTTT-CA-TCAAT-TTTGG-TG-----GGC-ATCCAA-TTT
gi|15 : acacGGTTT-TAATCACT-GTTCG-TA-----GGC-AT-CAA-CGTTTGTGGATT-GATGAAACTAAGAC-CCTGTAATTC-G-T--TGATACGT-Agatgcaaagtttcatggaaagctacatgtaa
gi|4 : -CA-TCATT-ATTCG-TT-----GACCAC-CAA-TTTTCGTGAAT
gi|10 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctgattaataatgtttaatccctctattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaa-ACTGA--TTC-G-T--GGATACAT-AAA-TTCGTG-GATA-CCCACCATG--AAAAATAA---TCACAT---------T----------------GG-------------GTCATC-----------
gi|8 : -CCCACCATG--AAAAAA-G---TCACAT---------TGGTT-CAT---CAATTGGAATGTCTCGTGCATTTATA-----------T--------------TTCAA-TAAAGAAAAAA---ATTTG-TATGTGAAATCTGAGCCCGATTTAAA---------A---TTATT-------CAT-T---------ATTAG-TACTA---AGGTGTGTT----ACA--TACA-------------TTTTTAAAAA---ATA---ATTA----------------TTAATAAT-----G--AT-----aattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaattaataatgtttaatgcctcaattacttatatttaccgggaaaagtttcatcatacatgcaatgaatattgaccattgtggataatgacagagcaagaacaggaaacttttctatcagaaacaccaa
gi|9 : ATA-----------T--------------TTCTA-TACAGATAAAA---AATCCATATGTGAAATCCAAGCCCGATT-------------AAAGTTATT-------CCTAA---------ATTGatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaattaccggaaaaagtttcattgtacatgtattgatcgctcatgaccgtggacaatgacggagcaagaacaggaaaatcttctataagaagcaccaaacttcaatga
gi|3 : tgtatctGTTATT-------GGTA----------AC-AG-TCATA---AGTTGCATT----ACA--TACA-------AT-ATATTTTCTTTTA---GTA---ATTA----------------TTCATAAT-----T--AT-----aaaatcaaattacagattaacgacaattggaaatacaatatcggtaacagtcctaagttgtgttacatacatatacaatttattttcttttagtaattaataacagtatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
gi|5 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacG-TCCTA---AGTTGTGTT----GCA--TATA-------AT-TTATTTTCTATTA---GTA---AATAATAATAGATATGTTTTTTAA-AAC-----AGTAT-----TAATGCCTCA-----ATCGT-------TATGT---TA-CC---G--AAAAATG-C-ATTATA--------CATGTAT-G---A--CCGCTCATG----ATCG-C-GGACAATGACG-GA-GAAA---GAT--CAGGATAATT---TTCTATCAG---AAGCACCAAACTTCAATGAACATTaacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|9 : atgtggtttcatcaatattcgtgggcatcaattttcgtggatcagaaaaagtccactgtttcgtggatatataaataggtgaattataataacacacattgtttgtctcgtgtatgtatttcgatacaggaaaaaaatccgtatgagaaatcctagccgatttaaagttattcccaaactgaaaatcaaattacagattgacgacaattggaaatacattttcggtaacaG-TCCTA---AGTTGTGTT----ACA--TACATATACA-AT-TTATTTTCTTTTA---GTA------A----------------TTAATAAC-----A--GT-----tt
gi|12 : tgtatctatatttctatacagataaaaaatccatatgtgaaatccaagcccgattaaagttattcctaaattgaaaatcaaattacagattaacgacaattggaaatacaatatcggtaaca-TCCTA---AGTTGTGTT----ACA--TTCA-------ACATTTTTCCCTTTTG---ATA---ATTA----------------TTAATAAT-----A--AA-----TAatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
gi|11 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacatTCTA---ATA---GATAATGT------------TTAATGCCTC---A--AT-----TAGT-----T-----AT--G-------T---T---TA-CC---GGAAAACGTTTC-ATTATAAATGTGTACATGTATTG---A--TCGCTCACG----ATCG-T-AGACATTGACG-GA-GCAA---GAA--CAGGAACATT---TTCTATCGG---AAGCACCAAACTTCAACGAAcctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctcaatttgtaatgtttaccaggaaaagtttcattatattgattgtggactatgactgagaaaggacagaaaaatattctatcagaagcac
gi|10 : aataattattcatactaatatctttgtaaacatatcggaagtgtatTTA---AT----AATG----------------TT--TAATGCCTCA--AT-----TACT-----T-----AT--A-------T---T---TA-CC---GGGAAAAGTTTC-ATCATA--------CATGCAATG---A--ATATTGACC----ATTG-T-GGATAATGACA-GA-GCAA---GAA--CAGGAAACTT---TTCTATCAG---AAACACCAAatccacgaaaattgaagttcaatgataccacagtatgtcatgaaatatatcataagatgttgccttgttttaagaaatgtttatgaaatcgtttttcgtgtgtattttttt
gi|4 : actgattcgtggatacataaattcgtggatacccaccatgaaaaataatcacattgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaaA----------------TTAATAATGTTT-A--ATCCCTCTATT-----A-----AT--T-------A---T---GT-CTATCGGAAAAAATTTC-ATT------------------TA---A--TCGCTAACG----ATCG-T-GGACAATGACG-GA-GCAA---GAA--CATGAAAATC---TTC-ATCAA---CAGTACCAAACCTCGTTGAACATT
gi|13 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctgA----------------TTAATAAT-----G--TT-----TAAT-----GTCTCTAT--TCTATATAT---T---TT-CC---GGAAAAAATTTC-ATCATA--------CATGTATCG---A--TCGCTCACG----ATTG-T-GGACAATGATG-GA-GCTA---GAA--CAGGAAAAGC---TTTTA-AAGTACATGTACCAAACTTCAATGAACCTTtgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|3 : cggaagtgcactctaT-----A--AT-----CAAT-----A-----AT--G-------T---T---T----------AAATGTTTC-ACTATA--------CATGTATTG---A--CCGCTCATG----ATCG-C-GGACAAAGACG-GAAGCCG---GAA--AAGGAAAATT---TTCTATCAG---AAGCACCAAATTTCGATGAACtgaatttgtggtggaggtcttcaacaaaatccacagaattggtgttcaacaatgaaatattgatgaa
gi|2 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattcT-----A--AT-----T--T-----A-----GT--T-------T---TATTTTACT---GGAAAAAGTTTTTATTATA--------CATGTGTTGG--A--TTGTTCACGC---ATCGTATAAACAATGACATGA-GCAA---GAAA-CAGGAAAATC---TTCTATCAG---AAGCACCAAATTTCTATGAA
gi|1 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttt-----A--AT-----TAGT-----A------T--G-------T---T---TC-CC---AGAGAAGGTTTC--TTATA--------CATGTCTTGGATA--TT-CACACGCTAAATTG-T-GGATAATAAGG-GA-GTAAAGAGAAAGTAAGAAAATAATATTCTATCAA---AAGCACCAAACTTCGTTGA
gi|12 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctc-----A--AT-----TTGT-----A-----AT--G-------T---T---TA-CC---AGGAAAAGTTTC-ATTATA--------------TTG---A--TTGT----------------GGACTATGACT-GA-GAAA---GGA--CAGAAAAATA---TTCTATCAG---AAGCACcgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|8 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacattcctaagttgtgttacattcaacatttttcccttttgataattattaataataaatacctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctc---T---TA-CC---GGAAAAAGTTTC-ATTGTA--------CATGTATTG---A--TCGCTCATG----ACCG-T-GGACAATGACG-GA-GCAA---GAA--CAGGAAAATC---TTCTATAAG---AAGCACCAAACTTCAATGA
gi|9 : cccaccatgaaaaaagtcacattggttcatcaattggaatgtctcgtgcatttatatttcaataaagaaaaaaatttgtatgtgaaatctgagcccgatttaaaattattcattattagtactaaggtgtgttacatacatttttaaaaaataattattaataatgatatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaaGAAAAAGTTTC-ATTATG--------CATGTACTA---A--CGGTTCATG----ATGG-C-GGACAATGACA-GA-GCAA---AAA--CAGGAAAATC---TTCTATCGG---AAGCACCAAAC
gi|18 : tgtatctatatttctatacagataaaaaatccatatgtgaaatccaagcccgattaaagttattcctaaattgaaaatcaaattacagattaacgacaattggaaatacaatatcggtaacagtcctaagttgtgttacatacatatacaatttattttcttttagtaattaataacagtatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccC---TTCTATTAT---AAGCACCAAGCTTCGATGAACAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GAATGCACTTCATTTAATTGATAGCCATCCTTTGTCTATGTGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 000000000000000000000000000000000000000000000000000000000000000 222222222222222 222222222222222222222222 22222222222222 1111111111111111 3333333333333333333333333333333333333
lowQualScore : 3 3 3 3 88888 3 3 3 0 55555 6 55 333 3 55 4 4 4 77 777 8888 111111111111111111111111111111111111111111111111111111111111111 22 66 2 66 6 777777777777777 4 555555555555555555555555 88 55 55 33333333333333 3 4444444444444444 777777777777777 88888 4444444444444444444444444444444444444 888888 2 55 1 66 2 99999999 777 9999 3 44 3 3 555 77 555 555
lowQualScore : . . . . ..... . . . . ..... . .. ... . .. . . . .. ... .... ............................................................... .. .. . .. . ............... . ........................ .. .. .. .............. . ................ ............... ..... ..................................... ...... . .. . .. . ........ ... .... . .. . . ... .. ... ...
lowQualScore : 3 3 3 3 33333 3 3 3 5 11111 2 00 999 6 00 0 4 4 77 000 4444 888888888888888888888888888888888888888888888888888888888888888 44 99 0 99 5 999999999999999 0 666666666666666666666666 00 00 00 66666666666666 3 4444444444444444 444444444444444 11111 7777777777777777777777777777777777777 444444 2 66 4 33 7 77777777 999 6666 7 22 1 1 444 33 000 000
consensus : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----AT-TA-GT-----A------------AT-G----T-TTA-CCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
Reference ( family-958 ) : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----AT-TA-GT-----A------------AT-N----T-TTN-CCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGCG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
gi|1 : TGTGGTTTTCA-TCAATTATTCG-TG-------C-AT-CAAATTTTCGTG-AT-----AGGCAAA-TCCACTGT--TTTC-G-TTTGGTAACGT-AAAATTCGTGAGATTTCCCACCATGAAAAAAAAAAA--TCACATTGCGT---------T---------------------CA--TGCAATCGGTACGTCTCTTGCATTTAGATTTTCAAATGCAGAAAAATCAAATTCGTATGTGAAATCCTAGCCCGATTT-GA---------TAAGCTAT-TTCTGTTACATATCAAATATCAA-TTAGTTCCTAAGTTGTGTT--ACC--TATA-------AT-T---TTTTCT-TT---------T----A-ATGAA--A----T------T----TATAAT-----A-----A--TA-AT-----A------------TT-G----T-TTT-TGGTAAAA
gi|1 : -----A-----AT-TA-GT-----A-------------T-G----T-TTC-CCAGAGAAGGTTTC---TT-ATA--------CATGTCTTGGATATT-CACACGCTAAATTGTG--GATAATAAGG-G-AGTAAAGAGAAAGTAAGAAAATAATATTCTATCAA---AAGCACCAAACTTCGTTGAcaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|1 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcTGGTTT-CA-TCATT-ATTCGTTG-----AAC-AT-C-A-TTTTCGTGcgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|10 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatACTGA--TT-C-G-T--GGATACAT-AAA-TTCGTG-GATA-CCCACCATG---AAAAATAA--TCACA-----T---------T---------------------
gi|10 : T---------T----A-ATAA-T-G----T------T------TAATGCCTCA-----AT-TA-CT-----T------------AT-A----T-TTA-CCGGGAAAAGTTTC--ATC-ATA--------CATGCAATG---AATATTGACC----ATTGTG--GATAATGACA-G-AGCAA---GAA--CAGGAAACTT---TTCTATCAG---AAACACCAAgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaattaataatgtttaatgcctcaattacttatatttaccgggaaaagtttcatcatacatgcaatgaatattgaccattgtggataatgacagagcaagaacaggaaacttttctatcagaaacaccaa
gi|11 : actgattcgtggatacataaattcgtggatacccaccatgaaaaataatcacattgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaaT-TC---------T----A-ATAGAT-AATGTT------T----AATGCCTC---A-----AT-TA-GT-----T------------AT-G----T-TTA-CCGGAAAACGTTTC--ATT-ATAAATGTGTACATGTATTG---ATCGCTCACG----ATCGTA--GACATTGACG-G-AGCAA---GAA--CAGGAACATT---TTCTATCGG---AAGCACCAAACTTCAACGAA
gi|12 : aataattattcatactaatatctttgtaaacatatcggaagtgta-TCCTAAGTTGTGTT--ACA--TTCA-------ACAT-TTTTCCCT-TT---------T----G-ATAATT-A----T------T----AATAAT-----A-----AA-TA-atccacgaaaattgaagttcaatgataccacagtatgtcatgaaatatatcataagatgttgccttgttttaagaaatgtttatgaaatcgtttttcgtgtgtattttttt
gi|12 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacat-----A-----AT-TT-GT-----A------------AT-G----T-TTA-CCAGGAAAAGTTTC--ATT-A--------------TATT-------------G----ATTGTG--GACTATGACT-G-AGAAA---GGA--CAGAAAAATA---TTCTATCAG---AAGCACcctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctcaatttgtaatgtttaccaggaaaagtttcattatattgattgtggactatgactgagaaaggacagaaaaatattctatcagaagcac
gi|13 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacattcctaagttgtgttacattcaacatttttcccttttgataattattaataataaatacctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctc-A----T------T----AATAAT-----G-----TT-TA-AT-----GTCTCTATTCTATAT-A----T-TTT-CCGGAAAAAATTTC--ATC-ATA--------CATGTATCG---ATCGCTCACG----ATTGTG--GACAATGATG-G-AGCTA---GAA--CAGGAAAAGC---TTTTA-AAGTACATGTACCAAACTTCAATGAACCTT
gi|14 : cggaagtgcactctaTGTGGCTT-CA-TTAAT-ATTCG-TG-----GAC-AT-CAG-TTTTCCTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATATGT-AAA-TTCATG-GGTA-CCCACCATG---AAAAAAAAAGTCACT-----T---------T--------------------------------GG-------------TTCATtgaatttgtggtggaggtcttcaacaaaatccacagaattggtgttcaacaatgaaatattgatgaa
gi|15 : cGGTTT-TAATCACT-GTTCG-TA-----GGC-AT-CAA-CGTTTGTGGATTGATGAAACTAAGACC-CTGTAATT-C-G-T--TGATACGT-Acgattgaaacatctcatgcattgtttcaatacaga
gi|16 : TGGTTT-CA-TCAAT-TTTGG-TG-----GGC-ATCCAA-TTT-----GAT-------GCAAA-------GT--TT-C-A-T--GGA
gi|18 : acacC---TTCTATTAT---AAGCACCAAGCTTCGATGAACATaagctacatgtaa
gi|2 : TGTGGTTT-CA-TCAAT-ATTCG-TGCACGTGGC-AT-AAA-TTTTCGTGGATA----AGGC-AAATCGACGGT--TT-C-GCT--AGATACGTAAAA-TTCG-G-GATA-CCCACCATG---AAAAAAAA--TCATG-----T---------T---------------------
gi|2 : cTTAT-C-------AGTA---------CAGCTAG-TCCTAAGTTGTGTT--ATA--TTCA-------AC-TGTTTTTCCT-TT---------T----C-ATAATTAA----T------TTTAAAATAAT-----A-----ATATC-TT-----A------------AT-T----T-Ttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|2 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtata-------CATA---------TA-TTGG-----AAGT-GTATT--GTA-------------AT-T-AATAATGT-TT---------T-------TAAAT-G----C------T----TTTAAT------------T-TA-GT-----T------------TT-A----T-TTTACTGGAAAAAGTTTTT-ATT-ATA--------CATGTGTTGG--ATTGTTCACGC---ATCGTATAAACAATGACATG-AGCAA---GAAA-CAGGAAAATC---TTCTATCAG---AAGCACCAAATTTCTATGAAgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|3 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaaTGTGGTTT-CA-TCAGT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTG-----------CA---TCCACTGT--TT-TTG-T--GGATACGT-AAA-TTCGCG-GATG-TCCACCATG---AAAAAGAA--TCACA-----TTGGTTTGTCT---------------------CA--TGCA------------------TTTATATTTC--AATATAG-AAAA--AAATCCGTATGTGAAATCCGAGTCAGATTTAAA---------A---TCAT-T-------ACTA---------CA-TTG
gi|3 : taGTTAT-T-------GGTA---------A---CAG-TCATAAGTTGCATT--ACA--TACA-------AT-A-TATTTTCT-TT---------T----A-GTAATT-A----T------T----CATAAT-----T-----AT-aaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|3 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacT-----A-----AT-CA-AT-----A------------AT-G----T-TT-------AAATGTTTC--ACT-ATA--------CATGTATTG---ACCGCTCATG----ATCGCG--GACAAAGACG-GAAGCCG---GAA--AAGGAAAATT---TTCTATCAG---AAGCACCAAATTTCGATGAACaacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|4 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattcTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCA----------------------GT-----TTCATG-GATG-CCTACCATG---AAAAAAAA----AAA-----A---------T---------------------CACGTGCA---GA-------------T--ATATTTC--AATATAGAAAAA--AA-TCTGTATGTGAAATCTGAGCTCGATTTAAA---------AG---TAT-T-------CCTA---------AA-TTGA-----AAATAAAATT--ACATGTACAGCATATTAT-T-TCTTTTTT-TTA--------T----ATATAATT-A----T------T----AATAAT-----AT----CT-TT-GTA----A------------AC-A----T-ATA-TCGAAAACATATTCTGATTAATA---------ATGT-TTA---ATCCCTC
gi|4 : acT---------T----A-ATAA-T-G----T------T------TAAT-----CCCTCTAT-TA-AT-----T------------AT-G----T-CTA-TCGGAAAAAATTTC--ATT-------------------TA---ATCGCTAACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CATGAAAATC---TTC-ATCAA---CAGTACCAAACCTCGTTGAACATTtattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|4 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctga-CA-TCATT-ATTCG-TT-----GACCAC-CAA-TTTTCGTGAATtgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|5 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctgattaataatgtttaatccctctattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGAAAAAGTCCACTGT--TT-C-G-T--GGATATAT-AAA-TAGGTG-AAT-------TATA---ATAACA-----CACA-----TTGTTTGTC-T---------------------CG--TGTA---TG-----------------TATTTC--GATACAGGAAAA--AAATCCGTATGAGAAATCCTAG-CCGATTT------------AAAGTTAT-T-------CCCA---------AA-CTG
gi|5 : aG-TCCTAAGTTGTGTT--GCA--TATA-------AT-T-TATTTTCTATTAGTAAATAAT----A-ATAGAT-A----TGTTTTTT----AA-AAC-----AGT---AT-TA-ATGCCTCA------------AT-CGTTATGTTA-CCGAAAAA---TGC--ATT-ATA--------CATGTAT-G---ACCGCTCATG----ATCGCG--GACAATGACG-G-AGAAA---GAT--CAGGATAATT---TTCTATCAG---AAGCACCAAACTTCAATGAACATTaaaatcaaattacagattgacgacaattggaaatacattttcggtaacagtcctaagttgtgttgcatataatttattttctattagtaaataataatagatatgttttttaaaacagtattaatgcctcaatcgttatgttaccgaaaaatgcattatacatgtatgaccgctcatgatcgcggacaatgacggagaaagatcaggataattttctatcagaagcaccaaacttcaatgaacatttt
gi|6 : atgtggtttcatcaatattcgtgggcatcaattttcgtggatcagaaaaagtccactgtttcgtggatatataaataggtgaattataataacacacattgtttgtctcgtgtatgtatttcgatacaggaaaaaaatccgtatgagaaatcctagccgatttaaagttattcccaaactgaaaatcaaattacagattgacgacaattggaaatacattttcggtaacaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATCCACTAT--TT-T-G-T--GCATACGT-AAA-GTCGTG-GATG-TCCACCATG---AAGAA------------------------------------------------A--TGCA------------------TTCATATTTC--AATAC---CAAA--AAATCCGTATGTGAAATCCGAGCACGATTTAAACTTTTTTTCAATGATATGTATGTAAACATA---------TA--TGG-----AAG-TGTTTTTAATT--TATA-------ATGT-TTTTTTAT-TT---------C----T-TTACGT------T------T----AATACTA----A-----AA-TATGT-----T------------ATGT----T-TTA-CTTGAAAAAAATTC--ATT--TA--------CATGTA-TA---AAAGTTGATG----ATTGGG--G-----GATG-A-AACAA----AA--GAG--AAATC---TTTTATCAG---AG-----AAATTTGGATGAACATTtt
gi|7 : aaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATTCACTGT--TT-T-G-T--GGATATGT-AAA-TTCATG-GATG-CCCACCATG---AAAAAAAG--TCACA-----T---------T---------------------CA--C-CA---GG-------------TTCATCTTTC--AATACAGAAAAA--TATTCCCTATGTGAAATCTGAGCCCGCTTTAAA---------AAAGTTAT-T-------CATA---------TA-CTGG-TCCTAAGAGGTGTT--ACA--TACA-------AT-T-TTTTTTCG-TT---------T----A-ATGAAT-A----T------T----AATAAT-----A-----AT-TA-GT-----A------------AT-T----T-TTT-CTGGGAAAAATTTC--ATT-ATA--------CATGTATTG---ATTGCTCACG----ATCGAG--GACAATGATG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATTtgatttttatggttgagctcttagacaaaaccccaaaaatgtgttgttccaacgaatatgataaacaac
gi|8 : -CCCACCATG---AAAAAAG---TCACA-----T---------TGGTTCATCAATTGGAATGTCTCG--TGCA------------------TTTATATTTC--AATAAAGAAAAA--AA-TTTGTATGTGAAATCTGAGCCCGATTTAAA---------A---TTAT-T-------CAT----------TA-TTAG-TACTAAGGTGTGTT--ACA--TACA------------------TT-TT---------TAAAAA-ATAATT-A----T------T----AATAAT-----G-----AT------------------------AT-C----T-TTG-C
gi|8 : -TTA-CCGGAAAAAGTTTC--ATT-GTA--------CATGTATTG---ATCGCTCATG----ACCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATAAG---AAGCACCAAACTTCAATGAaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaattaccggaaaaagtttcattgtacatgtattgatcgctcatgaccgtggacaatgacggagcaagaacaggaaaatcttctataagaagcaccaaacttcaatga
gi|9 : cccaccatgaaaaaagtcacattggttcatcaattggaatgtctcgtgcatttatatttcaataaagaaaaaaatttgtatgtgaaatctgagcccgatttaaaattattcattattagtactaaggtgtgttacatacatttttaaaaaataattattaataatgatatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaaATATTTC--TATACAGATAAA--AAATCCATATGTGAAATCCAAGCCCGATT-------------AAAGTTAT-T-------CCTA---------AA-TTG
gi|9 : tgtatctG-TCCTAAGTTGTGTT--ACA--TACATATACA-AT-T-TATTTTCT-TT---------T----A-GTAATT-A----A------T----AACAGT-----AT----GT-GT-GTA----A------------AC-A----T-TTA-TCG---AAAGTGT---ATT-GTA--------aaaatcaaattacagattaacgacaattggaaatacaatatcggtaacagtcctaagttgtgttacatacatatacaatttattttcttttagtaattaataacagtatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
gi|9 : tgtatctatatttctatacagataaaaaatccatatgtgaaatccaagcccgattaaagttattcctaaattgaaaatcaaattacagattaacgacaattggaaatacaatatcggtaaca-A----C------T----GATAAT-----G-----TT-TA-ATGCCTCA------------CT-G----T-TTA-CCG-AAAAAGTTTC--ATT-ATG--------CATGTACTA---ACGGTTCATG----ATGGCG--GACAATGACA-G-AGCAA---AAA--CAGGAAAATC---TTCTATCGG---AAGCACCAAACactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAATGCACTTCATTTAATTGATAGCCATCCTTTGTCTATGTGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 000000000000000000000000000000000000000000000000000000000000000 222222222222222 222222222222222222222222 22222222222222 1111111111111111 22222222222 333333333333333333
lowQualScore : 3 3 3 3 88888 3 3 3 0 55555 6 55 333 3 55 4 4 4 77 777 8888 111111111111111111111111111111111111111111111111111111111111111 22 66 2 66 6 777777777777777 4 555555555555555555555555 88 55 55 33333333333333 3 4444444444444444 777777777777777 88888 11111111111 2 666666666666666666 444 5555 66 2 99999999 777 9999 44 3 3 555 77 555 555
lowQualScore : . . . . ..... . . . . ..... . .. ... . .. . . . .. ... .... ............................................................... .. .. . .. . ............... . ........................ .. .. .. .............. . ................ ............... ..... ........... . .................. ... .... .. . ........ ... .... .. . . ... .. ... ...
lowQualScore : 3 3 3 3 33333 3 3 3 5 11111 2 00 999 6 00 0 4 4 77 000 4444 888888888888888888888888888888888888888888888888888888888888888 44 99 0 99 5 999999999999999 0 666666666666666666666666 00 00 00 66666666666666 3 4444444444444444 444444444444444 11111 22222222222 5 777777777777777777 666 3333 33 7 77777777 999 6666 22 1 1 444 33 000 000
consensus : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
Reference ( family-958 ) : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
gi|1 : TGTGGTTTTCA-TCAATTATTCG-TG-------C-AT-CAAATTTTCGTG-AT-----AGGCAAA-TCCACTGT--TTTC-G-TTTGGTAACGT-AAAATTCGTGAGATTTCCCACCATGAAAAAAAAAAA--TCACATTGCGT---------T---------------------CA--TGCAATCGGTACGTCTCTTGCATTTAGATTTTCAAATGCAGAAAAATCAAATTCGTATGTGAAATCCTAGCCCGATTT-GA---------TAAGCTAT-TTCTGTTACATATCAAATATCAA-TTAGTTCCTAAGTTGTGTT--ACC--TATA-------AT-T---TTTTCT-TT---------T----A-ATGAA--A----T------T----TATAAT-----A-----A-TA-AT-----A------------TT-G-TT----T-TTGGTAAAA
gi|1 : -----A-----ATTA-GT-----A-------------T-G-TT----TCCCAGAGAAGGTTTC---TT-ATA--------CATGTCTTGGATATT-CACACGCTAAATTGTG--GATAATAAGG-G-AGTAAAGAGAAAGTAAGAAAATAATATTCTATCAA---AAGCACCAAACTTCGTTGAcaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|1 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcTGGTTT-CA-TCATT-ATTCGTTG-----AAC-AT-C-A-TTTTCGTGcgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|10 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatACTGA--TT-C-G-T--GGATACAT-AAA-TTCGTG-GATA-CCCACCATG---AAAAATAA--TCACA-----T---------T---------------------
gi|10 : T---------T----A-ATAA-T-G----T------T------TAATGCCTCA-----ATTA-CT-----T------------AT-A-TT----TACCGGGAAAAGTTTC--ATC-ATA--------CATGCAATG---AATATTGACC----ATTGTG--GATAATGACA-G-AGCAA---GAA--CAGGAAACTT---TTCTATCAG---AAACACCAAgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaattaataatgtttaatgcctcaattacttatatttaccgggaaaagtttcatcatacatgcaatgaatattgaccattgtggataatgacagagcaagaacaggaaacttttctatcagaaacaccaa
gi|11 : actgattcgtggatacataaattcgtggatacccaccatgaaaaataatcacattgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaaT-TC---------T----A-ATAGAT-AATGTT------T----AATGCCTC---A-----ATTA-GT-----T------------AT-G-TT----TACCGGAAAACGTTTC--ATT-ATAAATGTGTACATGTATTG---ATCGCTCACG----ATCGTA--GACATTGACG-G-AGCAA---GAA--CAGGAACATT---TTCTATCGG---AAGCACCAAACTTCAACGAA
gi|12 : aataattattcatactaatatctttgtaaacatatcggaagtgta-TCCTAAGTTGTGTT--ACA--TTCA-------ACAT-TTTTCCCT-TT---------T----G-ATAATT-A----T------T----AATAAT-----A-----AATA-atccacgaaaattgaagttcaatgataccacagtatgtcatgaaatatatcataagatgttgccttgttttaagaaatgtttatgaaatcgtttttcgtgtgtattttttt
gi|12 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacat-----A-----ATTT-GT-----A------------AT-G-TT----TACCAGGAAAAGTTTC--ATT-A--------------TATT-------------G----ATTGTG--GACTATGACT-G-AGAAA---GGA--CAGAAAAATA---TTCTATCAG---AAGCACcctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctcaatttgtaatgtttaccaggaaaagtttcattatattgattgtggactatgactgagaaaggacagaaaaatattctatcagaagcac
gi|13 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacattcctaagttgtgttacattcaacatttttcccttttgataattattaataataaatacctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctc-A----T------T----AATAAT-----G-----TTTA-AT-----GTCTCTATTCTATAT-A-TT----TTCCGGAAAAAATTTC--ATC-ATA--------CATGTATCG---ATCGCTCACG----ATTGTG--GACAATGATG-G-AGCTA---GAA--CAGGAAAAGC---TTTTA-AAGTACATGTACCAAACTTCAATGAACCTT
gi|14 : cggaagtgcactctaTGTGGCTT-CA-TTAAT-ATTCG-TG-----GAC-AT-CAG-TTTTCCTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATATGT-AAA-TTCATG-GGTA-CCCACCATG---AAAAAAAAAGTCACT-----T---------T--------------------------------GG-------------TTCATtgaatttgtggtggaggtcttcaacaaaatccacagaattggtgttcaacaatgaaatattgatgaa
gi|15 : cGGTTT-TAATCACT-GTTCG-TA-----GGC-AT-CAA-CGTTTGTGGATTGATGAAACTAAGACC-CTGTAATT-C-G-T--TGATACGT-Acgattgaaacatctcatgcattgtttcaatacaga
gi|16 : TGGTTT-CA-TCAAT-TTTGG-TG-----GGC-ATCCAA-TTT-----GAT-------GCAAA-------GT--TT-C-A-T--GGA
gi|18 : acacC---TTCTATTAT---AAGCACCAAGCTTCGATGAACATaagctacatgtaa
gi|2 : TGTGGTTT-CA-TCAAT-ATTCG-TGCACGTGGC-AT-AAA-TTTTCGTGGATA----AGGC-AAATCGACGGT--TT-C-GCT--AGATACGTAAAA-TTCG-G-GATA-CCCACCATG---AAAAAAAA--TCATG-----T---------T---------------------
gi|2 : cTTAT-C-------AGTA---------CAGCTAG-TCCTAAGTTGTGTT--ATA--TTCA-------AC-TGTTTTTCCT-TT---------T----C-ATAATTAA----T------TTTAAAATAAT-----A-----ATtgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|2 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtata-------CATA---------TA-TTGG-----AAGT-GTATT--GTA-------------AT-T-AATAATGT-TT---------T-------TAAAT-G----C------T----TTTAAT------------TTA-GT-----TTT----------AT---TT----TACTGGAAAAAGTTTTT-ATT-ATA--------CATGTGTTGG--ATTGTTCACGC---ATCGTATAAACAATGACATG-AGCAA---GAAA-CAGGAAAATC---TTCTATCAG---AAGCACCAAATTTCTATGAAatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|3 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaaTGTGGTTT-CA-TCAGT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTG-----------CA---TCCACTGT--TT-TTG-T--GGATACGT-AAA-TTCGCG-GATG-TCCACCATG---AAAAAGAA--TCACA-----TTGGTTTGTCT---------------------CA--TGCA------------------TTTATATTTC--AATATAG-AAAA--AAATCCGTATGTGAAATCCGAGTCAGATTTAAA---------A---TCAT-T-------ACTA---------CA-TTG
gi|3 : taGTTAT-T-------GGTA---------A---CAG-TCATAAGTTGCATT--ACA--TACA-------AT-A-TATTTTCT-TT---------T----A-GTAATT-A----T------T----CATAAT-----T-----ATaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|3 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacT-----A-----ATCA-AT-----A------------AT-G-TT----TA------AATGTTTC--ACT-ATA--------CATGTATTG---ACCGCTCATG----ATCGCG--GACAAAGACG-GAAGCCG---GAA--AAGGAAAATT---TTCTATCAG---AAGCACCAAATTTCGATGAACaacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|4 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattcTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCA----------------------GT-----TTCATG-GATG-CCTACCATG---AAAAAAAA----AAA-----A---------T---------------------CACGTGCA---GA-------------T--ATATTTC--AATATAGAAAAA--AA-TCTGTATGTGAAATCTGAGCTCGATTTAAA---------AG---TAT-T-------CCTA---------AA-TTGA-----AAATAAAATT--ACATGTACAGCATATTAT-T-TCTTTTTT-TTA--------T----ATATAATT-A----T------T----AATAAT-----AT----CTTT-GTA----A------------AC-A-TA----TATCGAAAACATATTCTGATTAATA---------ATGT-TTA---ATCCCTC
gi|4 : acT---------T----A-ATAA-T-G----T------T------TAAT-----CCCTCTATTA-AT-----T------------AT-G-TC----TATCGGAAAAAATTTC--ATT-------------------TA---ATCGCTAACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CATGAAAATC---TTC-ATCAA---CAGTACCAAACCTCGTTGAACATTtattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|4 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctga-CA-TCATT-ATTCG-TT-----GACCAC-CAA-TTTTCGTGAATtgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|5 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctgattaataatgtttaatccctctattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGAAAAAGTCCACTGT--TT-C-G-T--GGATATAT-AAA-TAGGTG-AAT-------TATA---ATAACA-----CACA-----TTGTTTGTC-T---------------------CG--TGTA---TG-----------------TATTTC--GATACAGGAAAA--AAATCCGTATGAGAAATCCTAG-CCGATTT------------AAAGTTAT-T-------CCCA---------AA-CTG
gi|5 : aG-TCCTAAGTTGTGTT--GCA--TATA-------AT-T-TATTTTCTATTAGTAAATAAT----A-ATAGAT-A----TGTTTTTT----AA-AAC-----AGT---ATTA-ATGCCTCA------------ATCG-TTATGTTACCGAAAAA---TGC--ATT-ATA--------CATGTAT-G---ACCGCTCATG----ATCGCG--GACAATGACG-G-AGAAA---GAT--CAGGATAATT---TTCTATCAG---AAGCACCAAACTTCAATGAACATTaaaatcaaattacagattgacgacaattggaaatacattttcggtaacagtcctaagttgtgttgcatataatttattttctattagtaaataataatagatatgttttttaaaacagtattaatgcctcaatcgttatgttaccgaaaaatgcattatacatgtatgaccgctcatgatcgcggacaatgacggagaaagatcaggataattttctatcagaagcaccaaacttcaatgaacatttt
gi|6 : atgtggtttcatcaatattcgtgggcatcaattttcgtggatcagaaaaagtccactgtttcgtggatatataaataggtgaattataataacacacattgtttgtctcgtgtatgtatttcgatacaggaaaaaaatccgtatgagaaatcctagccgatttaaagttattcccaaactgaaaatcaaattacagattgacgacaattggaaatacattttcggtaacaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATCCACTAT--TT-T-G-T--GCATACGT-AAA-GTCGTG-GATG-TCCACCATG---AAGAA------------------------------------------------A--TGCA------------------TTCATATTTC--AATAC---CAAA--AAATCCGTATGTGAAATCCGAGCACGATTTAAACTTTTTTTCAATGATATGTATGTAAACATA---------TA--TGG-----AAG-TGTTTTTAATT--TATA-------ATGT-TTTTTTAT-TT---------C----T-TTACGT------T------T----AATACTA----A-----AATATGT-----T------------AT-GTTT----TACTTGAAAAAAATTC--ATT--TA--------CATGTA-TA---AAAGTTGATG----ATTGGG--G-----GATG-A-AACAA----AA--GAG--AAATC---TTTTATCAG---AG-----AAATTTGGATGAACATTtt
gi|7 : aaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATTCACTGT--TT-T-G-T--GGATATGT-AAA-TTCATG-GATG-CCCACCATG---AAAAAAAG--TCACA-----T---------T---------------------CA--C-CA---GG-------------TTCATCTTTC--AATACAGAAAAA--TATTCCCTATGTGAAATCTGAGCCCGCTTTAAA---------AAAGTTAT-T-------CATA---------TA-CTGG-TCCTAAGAGGTGTT--ACA--TACA-------AT-T-TTTTTTCG-TT---------T----A-ATGAAT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-T-TT----TTCTGGGAAAAATTTC--ATT-ATA--------CATGTATTG---ATTGCTCACG----ATCGAG--GACAATGATG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATTtgatttttatggttgagctcttagacaaaaccccaaaaatgtgttgttccaacgaatatgataaacaac
gi|8 : -CCCACCATG---AAAAAAG---TCACA-----T---------TGGTTCATCAATTGGAATGTCTCG--TGCA------------------TTTATATTTC--AATAAAGAAAAA--AA-TTTGTATGTGAAATCTGAGCCCGATTTAAA---------A---TTAT-T-------CAT----------TA-TTAG-TACTAAGGTGTGTT--ACA--TACA------------------TT-TT---------TAAAAA-ATAATT-A----T------T----AATAAT-----G-----AT
gi|8 : T----TACCGGAAAAAGTTTC--ATT-GTA--------CATGTATTG---ATCGCTCATG----ACCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATAAG---AAGCACCAAACTTCAATGAatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaattaccggaaaaagtttcattgtacatgtattgatcgctcatgaccgtggacaatgacggagcaagaacaggaaaatcttctataagaagcaccaaacttcaatga
gi|9 : cccaccatgaaaaaagtcacattggttcatcaattggaatgtctcgtgcatttatatttcaataaagaaaaaaatttgtatgtgaaatctgagcccgatttaaaattattcattattagtactaaggtgtgttacatacatttttaaaaaataattattaataatgatatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaaATATTTC--TATACAGATAAA--AAATCCATATGTGAAATCCAAGCCCGATT-------------AAAGTTAT-T-------CCTA---------AA-TTG
gi|9 : tgtatctG-TCCTAAGTTGTGTT--ACA--TACATATACA-AT-T-TATTTTCT-TT---------T----A-GTAATT-A----A------T----AACAGT-----AT----GTGT-GTA----A------------AC-A-TT----TATCG---AAAGTGT---ATT-GTA--------aaaatcaaattacagattaacgacaattggaaatacaatatcggtaacagtcctaagttgtgttacatacatatacaatttattttcttttagtaattaataacagtatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
gi|9 : tgtatctatatttctatacagataaaaaatccatatgtgaaatccaagcccgattaaagttattcctaaattgaaaatcaaattacagattaacgacaattggaaatacaatatcggtaaca-A----C------T----GATAAT-----G-----TTTA-ATGCCTCA------------CT-G-TT----TACCG-AAAAAGTTTC--ATT-ATG--------CATGTACTA---ACGGTTCATG----ATGGCG--GACAATGACA-G-AGCAA---AAA--CAGGAAAATC---TTCTATCGG---AAGCACCAAACactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAATGCACTTCATTTAATTGATAGCCATCCTTTGTCTATGTGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 000000000000000000000000000000000000000000000000000000000000000 222222222222222 222222222222222222222222 22222222222222 1111111111111111 22222222222 333333333333333333
lowQualScore : 3 3 3 3 88888 3 3 3 0 55555 6 55 333 3 55 4 4 4 77 777 8888 111111111111111111111111111111111111111111111111111111111111111 22 66 2 66 6 777777777777777 4 555555555555555555555555 88 55 55 33333333333333 3 4444444444444444 777777777777777 88888 11111111111 2 666666666666666666 444 5555 66 2 99999999 777 9999 44 3 3 555 77 555 555
lowQualScore : . . . . ..... . . . . ..... . .. ... . .. . . . .. ... .... ............................................................... .. .. . .. . ............... . ........................ .. .. .. .............. . ................ ............... ..... ........... . .................. ... .... .. . ........ ... .... .. . . ... .. ... ...
lowQualScore : 3 3 3 3 33333 3 3 3 5 11111 2 00 999 6 00 0 4 4 77 000 4444 888888888888888888888888888888888888888888888888888888888888888 44 99 0 99 5 999999999999999 0 666666666666666666666666 00 00 00 66666666666666 3 4444444444444444 444444444444444 11111 22222222222 5 777777777777777777 666 3333 33 7 77777777 999 6666 22 1 1 444 33 000 000
consensus : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
Reference ( family-958 ) : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
gi|1 : TGTGGTTTTCA-TCAATTATTCG-TG-------C-AT-CAAATTTTCGTG-AT-----AGGCAAA-TCCACTGT--TTTC-G-TTTGGTAACGT-AAAATTCGTGAGATTTCCCACCATGAAAAAAAAAAA--TCACATTGCGT---------T---------------------CA--TGCAATCGGTACGTCTCTTGCATTTAGATTTTCAAATGCAGAAAAATCAAATTCGTATGTGAAATCCTAGCCCGATTT-GA---------TAAGCTAT-TTCTGTTACATATCAAATATCAA-TTAGTTCCTAAGTTGTGTT--ACC--TATA-------AT-T---TTTTCT-TT---------T----A-ATGAA--A----T------T----TATAAT-----A-----A-TA-AT-----A------------TT-G-TT----T-TTGGTAAAA
gi|1 : -----A-----ATTA-GT-----A-------------T-G-TT----TCCCAGAGAAGGTTTC---TT-ATA--------CATGTCTTGGATATT-CACACGCTAAATTGTG--GATAATAAGG-G-AGTAAAGAGAAAGTAAGAAAATAATATTCTATCAA---AAGCACCAAACTTCGTTGAcaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|1 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcTGGTTT-CA-TCATT-ATTCGTTG-----AAC-AT-C-A-TTTTCGTGcgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|10 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatACTGA--TT-C-G-T--GGATACAT-AAA-TTCGTG-GATA-CCCACCATG---AAAAATAA--TCACA-----T---------T---------------------
gi|10 : T---------T----A-ATAA-T-G----T------T------TAATGCCTCA-----ATTA-CT-----T------------AT-A-TT----TACCGGGAAAAGTTTC--ATC-ATA--------CATGCAATG---AATATTGACC----ATTGTG--GATAATGACA-G-AGCAA---GAA--CAGGAAACTT---TTCTATCAG---AAACACCAAgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaattaataatgtttaatgcctcaattacttatatttaccgggaaaagtttcatcatacatgcaatgaatattgaccattgtggataatgacagagcaagaacaggaaacttttctatcagaaacaccaa
gi|11 : actgattcgtggatacataaattcgtggatacccaccatgaaaaataatcacattgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaaT-TC---------T----A-ATAGAT-AATGTT------T----AATGCCTC---A-----ATTA-GT-----T------------AT-G-TT----TACCGGAAAACGTTTC--ATT-ATAAATGTGTACATGTATTG---ATCGCTCACG----ATCGTA--GACATTGACG-G-AGCAA---GAA--CAGGAACATT---TTCTATCGG---AAGCACCAAACTTCAACGAA
gi|12 : aataattattcatactaatatctttgtaaacatatcggaagtgta-TCCTAAGTTGTGTT--ACA--TTCA-------ACAT-TTTTCCCT-TT---------T----G-ATAATT-A----T------T----AATAAT-----A-----AATA-atccacgaaaattgaagttcaatgataccacagtatgtcatgaaatatatcataagatgttgccttgttttaagaaatgtttatgaaatcgtttttcgtgtgtattttttt
gi|12 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacat-----A-----ATTT-GT-----A------------AT-G-TT----TACCAGGAAAAGTTTC--ATT-A--------------TATT-------------G----ATTGTG--GACTATGACT-G-AGAAA---GGA--CAGAAAAATA---TTCTATCAG---AAGCACcctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctcaatttgtaatgtttaccaggaaaagtttcattatattgattgtggactatgactgagaaaggacagaaaaatattctatcagaagcac
gi|13 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacattcctaagttgtgttacattcaacatttttcccttttgataattattaataataaatacctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctc-A----T------T----AATAAT-----G-----TTTA-AT-----GTCTCTATTCTATAT-A-TT----TTCCGGAAAAAATTTC--ATC-ATA--------CATGTATCG---ATCGCTCACG----ATTGTG--GACAATGATG-G-AGCTA---GAA--CAGGAAAAGC---TTTTA-AAGTACATGTACCAAACTTCAATGAACCTT
gi|14 : cggaagtgcactctaTGTGGCTT-CA-TTAAT-ATTCG-TG-----GAC-AT-CAG-TTTTCCTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATATGT-AAA-TTCATG-GGTA-CCCACCATG---AAAAAAAAAGTCACT-----T---------T--------------------------------GG-------------TTCATtgaatttgtggtggaggtcttcaacaaaatccacagaattggtgttcaacaatgaaatattgatgaa
gi|15 : cGGTTT-TAATCACT-GTTCG-TA-----GGC-AT-CAA-CGTTTGTGGATTGATGAAACTAAGACC-CTGTAATT-C-G-T--TGATACGT-Acgattgaaacatctcatgcattgtttcaatacaga
gi|16 : TGGTTT-CA-TCAAT-TTTGG-TG-----GGC-ATCCAA-TTT-----GAT-------GCAAA-------GT--TT-C-A-T--GGA
gi|18 : acacC---TTCTATTAT---AAGCACCAAGCTTCGATGAACATaagctacatgtaa
gi|2 : TGTGGTTT-CA-TCAAT-ATTCG-TGCACGTGGC-AT-AAA-TTTTCGTGGATA----AGGC-AAATCGACGGT--TT-C-GCT--AGATACGTAAAA-TTCG-G-GATA-CCCACCATG---AAAAAAAA--TCATG-----T---------T---------------------
gi|2 : cTTAT-C-------AGTA---------CAGCTAG-TCCTAAGTTGTGTT--ATA--TTCA-------AC-TGTTTTTCCT-TT---------T----C-ATAATTAA----T------TTTAAAATAAT-----A-----ATtgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|2 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtata-------CATA---------TA-TTGG-----AAGT-GTATT--GTA-------------AT-T-AATAATGT-TT---------T-------TAAAT-G----C------T----TTTAAT------------TTA-GT-----TTT----------AT---TT----TACTGGAAAAAGTTTTT-ATT-ATA--------CATGTGTTGG--ATTGTTCACGC---ATCGTATAAACAATGACATG-AGCAA---GAAA-CAGGAAAATC---TTCTATCAG---AAGCACCAAATTTCTATGAAatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|3 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaaTGTGGTTT-CA-TCAGT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTG-----------CA---TCCACTGT--TT-TTG-T--GGATACGT-AAA-TTCGCG-GATG-TCCACCATG---AAAAAGAA--TCACA-----TTGGTTTGTCT---------------------CA--TGCA------------------TTTATATTTC--AATATAG-AAAA--AAATCCGTATGTGAAATCCGAGTCAGATTTAAA---------A---TCAT-T-------ACTA---------CA-TTG
gi|3 : taGTTAT-T-------GGTA---------A---CAG-TCATAAGTTGCATT--ACA--TACA-------AT-A-TATTTTCT-TT---------T----A-GTAATT-A----T------T----CATAAT-----T-----ATaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|3 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacT-----A-----ATCA-AT-----A------------AT-G-TT----TA------AATGTTTC--ACT-ATA--------CATGTATTG---ACCGCTCATG----ATCGCG--GACAAAGACG-GAAGCCG---GAA--AAGGAAAATT---TTCTATCAG---AAGCACCAAATTTCGATGAACaacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|4 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattcTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCA----------------------GT-----TTCATG-GATG-CCTACCATG---AAAAAAAA----AAA-----A---------T---------------------CACGTGCA---GA-------------T--ATATTTC--AATATAGAAAAA--AA-TCTGTATGTGAAATCTGAGCTCGATTTAAA---------AG---TAT-T-------CCTA---------AA-TTGA-----AAATAAAATT--ACATGTACAGCATATTAT-T-TCTTTTTT-TTA--------T----ATATAATT-A----T------T----AATAAT-----AT----CTTT-GTA----A------------AC-A-TA----TATCGAAAACATATTCTGATTAATA---------ATGT-TTA---ATCCCTC
gi|4 : acT---------T----A-ATAA-T-G----T------T------TAAT-----CCCTCTATTA-AT-----T------------AT-G-TC----TATCGGAAAAAATTTC--ATT-------------------TA---ATCGCTAACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CATGAAAATC---TTC-ATCAA---CAGTACCAAACCTCGTTGAACATTtattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|4 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctga-CA-TCATT-ATTCG-TT-----GACCAC-CAA-TTTTCGTGAATtgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|5 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctgattaataatgtttaatccctctattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGAAAAAGTCCACTGT--TT-C-G-T--GGATATAT-AAA-TAGGTG-AAT-------TATA---ATAACA-----CACA-----TTGTTTGTC-T---------------------CG--TGTA---TG-----------------TATTTC--GATACAGGAAAA--AAATCCGTATGAGAAATCCTAG-CCGATTT------------AAAGTTAT-T-------CCCA---------AA-CTG
gi|5 : aG-TCCTAAGTTGTGTT--GCA--TATA-------AT-T-TATTTTCTATTAGTAAATAAT----A-ATAGAT-A----TGTTTTTT----AA-AAC-----AGT---ATTA-ATGCCTCA------------ATCG-TTATGTTACCGAAAAA---TGC--ATT-ATA--------CATGTAT-G---ACCGCTCATG----ATCGCG--GACAATGACG-G-AGAAA---GAT--CAGGATAATT---TTCTATCAG---AAGCACCAAACTTCAATGAACATTaaaatcaaattacagattgacgacaattggaaatacattttcggtaacagtcctaagttgtgttgcatataatttattttctattagtaaataataatagatatgttttttaaaacagtattaatgcctcaatcgttatgttaccgaaaaatgcattatacatgtatgaccgctcatgatcgcggacaatgacggagaaagatcaggataattttctatcagaagcaccaaacttcaatgaacatttt
gi|6 : atgtggtttcatcaatattcgtgggcatcaattttcgtggatcagaaaaagtccactgtttcgtggatatataaataggtgaattataataacacacattgtttgtctcgtgtatgtatttcgatacaggaaaaaaatccgtatgagaaatcctagccgatttaaagttattcccaaactgaaaatcaaattacagattgacgacaattggaaatacattttcggtaacaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATCCACTAT--TT-T-G-T--GCATACGT-AAA-GTCGTG-GATG-TCCACCATG---AAGAA------------------------------------------------A--TGCA------------------TTCATATTTC--AATAC---CAAA--AAATCCGTATGTGAAATCCGAGCACGATTTAAACTTTTTTTCAATGATATGTATGTAAACATA---------TA--TGG-----AAG-TGTTTTTAATT--TATA-------ATGT-TTTTTTAT-TT---------C----T-TTACGT------T------T----AATACTA----A-----AATATGT-----T------------AT-GTTT----TACTTGAAAAAAATTC--ATT--TA--------CATGTA-TA---AAAGTTGATG----ATTGGG--G-----GATG-A-AACAA----AA--GAG--AAATC---TTTTATCAG---AG-----AAATTTGGATGAACATTtt
gi|7 : aaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATTCACTGT--TT-T-G-T--GGATATGT-AAA-TTCATG-GATG-CCCACCATG---AAAAAAAG--TCACA-----T---------T---------------------CA--C-CA---GG-------------TTCATCTTTC--AATACAGAAAAA--TATTCCCTATGTGAAATCTGAGCCCGCTTTAAA---------AAAGTTAT-T-------CATA---------TA-CTGG-TCCTAAGAGGTGTT--ACA--TACA-------AT-T-TTTTTTCG-TT---------T----A-ATGAAT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-T-TT----TTCTGGGAAAAATTTC--ATT-ATA--------CATGTATTG---ATTGCTCACG----ATCGAG--GACAATGATG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATTtgatttttatggttgagctcttagacaaaaccccaaaaatgtgttgttccaacgaatatgataaacaac
gi|8 : -CCCACCATG---AAAAAAG---TCACA-----T---------TGGTTCATCAATTGGAATGTCTCG--TGCA------------------TTTATATTTC--AATAAAGAAAAA--AA-TTTGTATGTGAAATCTGAGCCCGATTTAAA---------A---TTAT-T-------CAT----------TA-TTAG-TACTAAGGTGTGTT--ACA--TACA------------------TT-TT---------TAAAAA-ATAATT-A----T------T----AATAAT-----G-----AT
gi|8 : T----TACCGGAAAAAGTTTC--ATT-GTA--------CATGTATTG---ATCGCTCATG----ACCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATAAG---AAGCACCAAACTTCAATGAatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaattaccggaaaaagtttcattgtacatgtattgatcgctcatgaccgtggacaatgacggagcaagaacaggaaaatcttctataagaagcaccaaacttcaatga
gi|9 : cccaccatgaaaaaagtcacattggttcatcaattggaatgtctcgtgcatttatatttcaataaagaaaaaaatttgtatgtgaaatctgagcccgatttaaaattattcattattagtactaaggtgtgttacatacatttttaaaaaataattattaataatgatatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaaATATTTC--TATACAGATAAA--AAATCCATATGTGAAATCCAAGCCCGATT-------------AAAGTTAT-T-------CCTA---------AA-TTG
gi|9 : tgtatctG-TCCTAAGTTGTGTT--ACA--TACATATACA-AT-T-TATTTTCT-TT---------T----A-GTAATT-A----A------T----AACAGT-----AT----GTGT-GTA----A------------AC-A-TT----TATCG---AAAGTGT---ATT-GTA--------aaaatcaaattacagattaacgacaattggaaatacaatatcggtaacagtcctaagttgtgttacatacatatacaatttattttcttttagtaattaataacagtatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
gi|9 : tgtatctatatttctatacagataaaaaatccatatgtgaaatccaagcccgattaaagttattcctaaattgaaaatcaaattacagattaacgacaattggaaatacaatatcggtaaca-A----C------T----GATAAT-----G-----TTTA-ATGCCTCA------------CT-G-TT----TACCG-AAAAAGTTTC--ATT-ATG--------CATGTACTA---ACGGTTCATG----ATGGCG--GACAATGACA-G-AGCAA---AAA--CAGGAAAATC---TTCTATCGG---AAGCACCAAACactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
blockSeqs : . A . T CACGT C C . TGATG A AA TT C . A . . A . AAGT TTGGTTCATCAATTGGAATGTCTCGTGCA TC . A . A AAACTTTTTTTCAAT G ATGTAAACATATA T TA TG GCATATTATTTC A AGTAAATAATA ATATGTTTTT TTAAA GCCTCA T GTCTCTATTCTAT CG ATGT TG A AATGTGTA G C TA T A . A . TAC
blockSeqs : . . . . . . . . C G . C . . . . . A . AT TTGTTTGTCTCGTGTATG TT . G . A AAAAAA . AGTACAGC T . . TATACAATTTA . TAAAAA ATAATGTT A CCCTCT . GCCTCA GT . T . . . . . . . . . . .
blockSeqs : . . . . . . . . A A . C . . . . . A . AT TTGGTTTGTCTCATGCA TC . A . A AAAAG . CATATAT T . . ACATTT . ATAT TTAAT A TCA . GCCTCA G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C A . C . . . . . G . AT ATCACGTGCAGA TC . A . T AAAA . ACTACAT T . . ACTGTT . TA TTAT A AGT . TTT A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C G . C . . . . . G . GT TTCACCAGG TT . A . A AAAA . CCTAAAT T . . ATGTTT . TA ATGC T AT . AA G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C A . C . . . . . G . A ATGCA . . . . . AAA . CCCAAAC T . . ATTAA . TG TTAT C AA . AA G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C A . C . . . . . G . T TTGG . . . . . AAA . CATATAC T . . ATATA . TC TTAT A AT . A A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . CCTAAAT . . . ATTTA . TA ATAT A A . T G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . CATTAT . . . ATTTT . TA TTAT A A . T A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . GGTAA . . . . . CT TTAA A A . A G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . TA TGT A G . A T . . . . . . . . . . . . .
blockSeqs : TA TGT A A . T A . . . . . . . . . . . . .
blockSeqs : T GTT G T . T G . . . . . . .
blockSeqs : . A . A . . . . .
blockSeqs : . A . .
blockSeqs : G
blockSeqs : G
blockSeqs : .
blockSeqCons : C**** C** ** G* *** ** ** AAAA*********** CCTANAT***************** T* ATTTN********* TTAT*********** *** **** *** ** ***
originalCons : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAA---------AAAGTTAT-T-------CNTA---------NA-TTGG-TCCTAAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCT-TT---------T----A-ATAANT-A----T------T----AATAAT-----A-----ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
finalCons : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TTC--G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAAAA-----------GTTAT-TCCTANAT-----------------TGGT-CCTAAGTTGTGTT--ACA--TACAATTTN---------TTTTCT-TT---------T----A-ATAATTAT-----------T----AATAAT-----A-----ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAATGCACTTCATTTAATTGATAGCCATCCTTTGTCTATGTGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 000000000000000000000000000000000000000000000000000000000000000 111 333333333333333333333333 111111 22222222222222 44444444444444444444444444444444444444444444444
lowQualScore : 3 3 3 3 88888 3 3 3 0 55555 6 55 333 3 55 4 4 4 77 777 8888 111111111111111111111111111111111111111111111111111111111111111 22 66 2 66 6 0 8 000 222222222222222222222222 4 777 111111 0 55 55 66666666666666 2 2 5555 2 2 77777777 5555 7777777 666666 2 44444444444444444444444444444444444444444444444 444 5555 66 2 99999999 777 9999 44 3 3 555 77 555 555
lowQualScore : . . . . ..... . . . . ..... . .. ... . .. . . . .. ... .... ............................................................... .. .. . .. . . . ... ........................ . ... ...... . .. .. .............. . . .... . . ........ .... ....... ...... . ............................................... ... .... .. . ........ ... .... .. . . ... .. ... ...
lowQualScore : 3 3 3 3 33333 3 3 3 5 11111 2 00 999 6 00 0 4 4 77 000 4444 888888888888888888888888888888888888888888888888888888888888888 44 99 0 99 5 8 9 000 333333333333333333333333 0 000 555555 9 55 55 99999999999999 7 7 7777 7 7 66666666 0000 6666666 888888 4 99999999999999999999999999999999999999999999999 666 3333 33 7 77777777 999 6666 22 1 1 444 33 000 000
consensus : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAA-AA--GTTATTCC-----TA----------------NATTGG-T---CCT------AAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCTTT-TA-A----T-A-AT--T-A---TT----AA-------T------A-AT-----A----------------ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
Reference ( family-958 ) : TGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATACGT-AAA-TTCGTG-GATG-CCCACCATG---AAAAAAAA--TCACA-----T---------T---------------------CA--TGCA---GG-------------TTCATATTTC--AATACAGAAAAA--AAATCCGTATGTGAAATCCGAGCCCGATTTAA-AA--GTTATTCC-----TA----------------NATTGG-T---CCT------AAGTTGTGTT--ACA--TACA-------AT-T-TNTTTTCTTT-TA-A----T-A-AT--T-A---TT----AA-------T------A-AT-----A----------------ATTA-GT-----A------------AT-G-TT----TACCGGAAAAAGTTTC--ATT-ATA--------CATGTATTG---ATCGCTCACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATT
gi|1 : TGTGGTTTTCA-TCAATTATTCG-TG-------C-AT-CAAATTTTCGTG-AT-----AGGCAAA-TCCACTGT--TTTC-G-TTTGGTAACGT-AAAATTCGTGAGATTTCCCACCATGAAAAAAAAAAA--TCACATTGCGT---------T---------------------CA--TGCAATCGGTACGTCTCTTGCATTTAGATTTTCAAATGCAGAAAAATCAAATTCGTATGTGAAATCCTAGCCCGATTTGATAA--GCTATTTC-----TGTTACATATCAAATATCAATTAGTT---CCT------AAGTTGTGTT--ACC--TATA-------AT-T---TTTTCTTT-TA-A----TGA-A-----A---TT----TA-------T------A-AT-----A----------------A-TA-AT-----A------------TT-G-TT----T-TTGGTAAAA
gi|1 : T-TA-A----C-A-AT--T-T---TT----AT-------T------G--TCCTC-A----------------ATTA-GT-----A-------------T-G-TT----TCCCAGAGAAGGTTTC---TT-ATA--------CATGTCTTGGATATT-CACACGCTAAATTGTG--GATAATAAGG-G-AGTAAAGAGAAAGTAAGAAAATAATATTCTATCAA---AAGCACCAAACTTCGTTGAcaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|1 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaaTGGTTT-CA-TCATT-ATTCGTTG-----AAC-AT-C-A-TTTTCGTGcgatttgaattcgtggttgagtcttcaaagaaatcacgaaaatgatgttcaacgaataatgatgaaacca
gi|10 : tgtggttttcatcaattattcgtgcatcaaattttcgtgataggcaaatccactgttttcgtttggtaacgtaaaattcgtgagatttcccaccatgaaaaaaaaaaatcacattgcgttcatgcaatcggtacgtctcttgcatttagattttcaaatgcagaaaaatcaaattcgtatgtgaaatcctagcccgatttgataagctatttctgttacatatcaaatatcaattagttcctaagttgtgttacctataattttttcttttaatgaaatttataataataatattgtttttggtaaaacaatatcggaagtatatctaattaacaatttttattgtcctcaattagtatgtttcccagagaaggtttcttatacatgtcttggatattcacacgctaaattgtggataataagggagtaaagagaaagtaagaaaataatattctatcaaaagcaccaaacttcgttgacgatttgaattcgtggttgagtcttcaaagaaatACTGA--TT-C-G-T--GGATACAT-AAA-TTCGTG-GATA-CCCACCATG---AAAAATAA--TCACA-----T---------T---------------------
gi|10 : T-TA-A----T-A-AT--G-T---TT----AA-------T------G-CCTC---A----------------ATTA-CT-----T------------AT-A-TT----TACCGGGAAAAGTTTC--ATC-ATA--------CATGCAATG---AATATTGACC----ATTGTG--GATAATGACA-G-AGCAA---GAA--CAGGAAACTT---TTCTATCAG---AAACACCAAgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaattaataatgtttaatgcctcaattacttatatttaccgggaaaagtttcatcatacatgcaatgaatattgaccattgtggataatgacagagcaagaacaggaaacttttctatcagaaacaccaa
gi|11 : actgattcgtggatacataaattcgtggatacccaccatgaaaaataatcacattgggtcatcaattagaacgcctccaacatttgataaaggcaattgggaatacatttatattatcgttaagagctaattccaagttttgttacattcaagatatagatattaataataatatctttgtaaacatatcttggaagtgtattgtaaTTC-TA-A----T-AGATAAT-G---TT-------------T------A-ATGCCTCA----------------ATTA-GT-----T------------AT-G-TT----TACCGGAAAACGTTTC--ATT-ATAAATGTGTACATGTATTG---ATCGCTCACG----ATCGTA--GACATTGACG-G-AGCAA---GAA--CAGGAACATT---TTCTATCGG---AAGCACCAAACTTCAACGAA
gi|12 : aataattattcatactaatatctttgtaaacatatcggaagtgta-T---CCT------AAGTTGTGTT--ACA--TTCA-------ACAT-TTTTCCCTTT-TG-A----T-A-AT--T-A---TT----AA-------T------A-AT-----A----------------AATA-atccacgaaaattgaagttcaatgataccacagtatgtcatgaaatatatcataagatgttgccttgttttaagaaatgtttatgaaatcgtttttcgtgtgtattttttt
gi|12 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacat-----A----------------ATTT-GT-----A------------AT-G-TT----TACCAGGAAAAGTTTC--ATT-A--------------TATT-------------G----ATTGTG--GACTATGACT-G-AGAAA---GGA--CAGAAAAATA---TTCTATCAG---AAGCACcctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctcaatttgtaatgtttaccaggaaaagtttcattatattgattgtggactatgactgagaaaggacagaaaaatattctatcagaagcac
gi|13 : cacattggttcatcaatcggaatgactcttatatttcaatagacagattaagctatggcaattggaaatcggtaacattcctaagttgtgttacattcaacatttttcccttttgataattattaataataaatacctttgtattaaaacatatatcgaaagtgtattctaataaaaaatgttttgaaatgcctc-A---TT----AA-------T------A-AT-----G----------------TTTA-AT-----GTCTCTATTCTATAT-A-TT----TTCCGGAAAAAATTTC--ATC-ATA--------CATGTATCG---ATCGCTCACG----ATTGTG--GACAATGATG-G-AGCTA---GAA--CAGGAAAAGC---TTTTA-AAGTACATGTACCAAACTTCAATGAACCTT
gi|14 : cggaagtgcactctaTGTGGCTT-CA-TTAAT-ATTCG-TG-----GAC-AT-CAG-TTTTCCTGGATC----AGGCAAAATCCACTGT--TT-C-G-T--GGATATGT-AAA-TTCATG-GGTA-CCCACCATG---AAAAAAAAAGTCACT-----T---------T--------------------------------GG-------------TTCATtgaatttgtggtggaggtcttcaacaaaatccacagaattggtgttcaacaatgaaatattgatgaa
gi|15 : cGGTTT-TAATCACT-GTTCG-TA-----GGC-AT-CAA-CGTTTGTGGATTGATGAAACTAAGACC-CTGTAATT-C-G-T--TGATACGT-Acgattgaaacatctcatgcattgtttcaatacaga
gi|16 : TGGTTT-CA-TCAAT-TTTGG-TG-----GGC-ATCCAA-TTT-----GAT-------GCAAA-------GT--TT-C-A-T--GGA
gi|18 : acacC---TTCTATTAT---AAGCACCAAGCTTCGATGAACATaagctacatgtaa
gi|2 : TGTGGTTT-CA-TCAAT-ATTCG-TGCACGTGGC-AT-AAA-TTTTCGTGGATA----AGGC-AAATCGACGGT--TT-C-GCT--AGATACGTAAAA-TTCG-G-GATA-CCCACCATG---AAAAAAAA--TCATG-----T---------T---------------------
gi|2 : cTAG-T---CCT------AAGTTGTGTT--ATA--TTCA-------AC-TGTTTTTCCTTT-TC-A----T-A-AT--TAA---TTTTAAAA-------T------A-AT-----A----------------ATtgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|2 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagcT-TA-A----T-A-ATGTT-T---TT----AAATGCTTTT------A-AT-----------------------TTA-GT-----TTT----------AT---TT----TACTGGAAAAAGTTTTT-ATT-ATA--------CATGTGTTGG--ATTGTTCACGC---ATCGTATAAACAATGACATG-AGCAA---GAAA-CAGGAAAATC---TTCTATCAG---AAGCACCAAATTTCTATGAAatcttaattttgtaaacatatattggaagtgtattgtaattaataatgtttttaaatgcttttaatttagttttattttactggaaaaagtttttattatacatgtgttggattgttcacgcatcgtataaacaatgacatgagcaagaaacaggaaaatcttctatcagaagcaccaaatttctatgaa
gi|3 : ctgtggtttcatcaatattcgtgcacgtggcataaattttcgtggataaggcaaatcgacggtttcgctagatacgtaaaattcgggatacccaccatgaaaaaaaatcatgtttgtttatcaatcggaactgcctctttgaatttataatttcatatacaattaacggcaattggaatacatgtatattatcagtacagctagtcctaagttgtgttatattcaactgtttttccttttcataattaattttaaaataataatatcttaattttgtaaacatatattggaagtgtattgtaaTGTGGTTT-CA-TCAGT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTG-----------CA---TCCACTGT--TT-TTG-T--GGATACGT-AAA-TTCGCG-GATG-TCCACCATG---AAAAAGAA--TCACA-----TTGGTTTGTCT---------------------CA--TGCA------------------TTTATATTTC--AATATAG-AAAA--AAATCCGTATGTGAAATCCGAGTCAGATTTAA-AA---TCATTAC-----TA----------------CATTG
gi|3 : taTTAATAC--GTTATTGG-----TA----------------A--CAG-T---CAT------AAGTTGCATT--ACA--TACA-------AT-A-TATTTTCTTT-TA-G----T-A-AT--T-A---TT----CA-------T------A-AT-----T----------------ATaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|3 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatataT-----A----------------ATCA-AT-----A------------AT-G-TT----TA------AATGTTTC--ACT-ATA--------CATGTATTG---ACCGCTCATG----ATCGCG--GACAAAGACG-GAAGCCG---GAA--AAGGAAAATT---TTCTATCAG---AAGCACCAAATTTCGATGAACaacatgtttgcaaacatatatcgaaagtgtattctaatcaataatgtttaaatgtttcactatacatgtattgaccgctcatgatcgcggacaaagacggaagccggaaaaggaaaattttctatcagaagcaccaaatttcgatgaac
gi|4 : tatgtggtttcatcagtattcgtgggcatcaattttcgtgcatccactgtttttgtggatacgtaaattcgcggatgtccaccatgaaaaagaatcacattggtttgtctcatgcatttatatttcaatatagaaaaaaatccgtatgtgaaatccgagtcagatttaaaatcattactacattgaaattcaatttacagattgacgacaattggaaaatatattaatacgttattggtaacagtcataagttgcattacatacaatatattttcttttagtaattattcataattataacatgtttgcaaacatatatcgaaagtgtattcTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGGCAAAATCCA----------------------GT-----TTCATG-GATG-CCTACCATG---AAAAAAAA----AAA-----A---------T---------------------CACGTGCA---GA-------------T--ATATTTC--AATATAGAAAAA--AA-TCTGTATGTGAAATCTGAGCTCGATTTAA-AA--G-TATTCC-----TA----------------AATTGA--------------AAATAAAATT--ACATGTACAGCATATTAT-T-TCTTTTTTTTATATA----T-A-AT--T-A---TT----AA-------T------A-AT-----AT---------------CTTT-GTA----A------------AC-A-TA----TATCGAAAACATATTCTGATTAATA---------ATGT-TTA---ATCCCTC
gi|4 : acT-TA-A----T-A-AT--G-T---TT----AA-------TCCCTCTA-TT-----A----------------ATTA----------------------T-G-TC----TATCGGAAAAAATTTC--ATT-------------------TA---ATCGCTAACG----ATCGTG--GACAATGACG-G-AGCAA---GAA--CATGAAAATC---TTC-ATCAA---CAGTACCAAACCTCGTTGAACATTtattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|4 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctga-CA-TCATT-ATTCG-TT-----GACCAC-CAA-TTTTCGTGAATtgaacttccaacgaaattcacgaaaattggtggtcaacgaataatgatg
gi|5 : actgtggtttcatcaatattcgtgggcatcaattttcgtggatcaggcaaaatccagtttcatggatgcctaccatgaaaaaaaaaaaatcacgtgcagatatatttcaatatagaaaaaaatctgtatgtgaaatctgagctcgatttaaaagtattcctaaattgaaaataaaattacatgtacagcatattatttcttttttttatatataattattaataatatctttgtaaacatatatcgaaaacatattctgattaataatgtttaatccctctattaattatgtctatcggaaaaaatttcatttaatcgctaacgatcgtggacaatgacggagcaagaacatgaaaatcttcatcaacagtaccaaacctcgttgaacatttgaacttccaacgaaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGAAAAAGTCCACTGT--TT-C-G-T--GGATATAT-AAA-TAGGTG-AAT-------TATA---ATAACA-----CACA-----TTGTTTGTC-T---------------------CG--TGTA---TG-----------------TATTTC--GATACAGGAAAA--AAATCCGTATGAGAAATCCTAG-CCGATTT-A-AA--GTTATTCC-----CA----------------AACTG
gi|5 : aG-T---CCT------AAGTTGTGTT--GCA--TATA-------AT-T-TATTTTCTAT-TA-G----T-A-AA--T-A---AT----AA-------T------AGAT-----ATGTTTTTTAAAACAGTATTA-ATGCCTCA------------ATCG-TTATGTTACCGAAAAA---TGC--ATT-ATA--------CATGTAT-G---ACCGCTCATG----ATCGCG--GACAATGACG-G-AGAAA---GAT--CAGGATAATT---TTCTATCAG---AAGCACCAAACTTCAATGAACATTaaaatcaaattacagattgacgacaattggaaatacattttcggtaacagtcctaagttgtgttgcatataatttattttctattagtaaataataatagatatgttttttaaaacagtattaatgcctcaatcgttatgttaccgaaaaatgcattatacatgtatgaccgctcatgatcgcggacaatgacggagaaagatcaggataattttctatcagaagcaccaaacttcaatgaacatttt
gi|6 : atgtggtttcatcaatattcgtgggcatcaattttcgtggatcagaaaaagtccactgtttcgtggatatataaataggtgaattataataacacacattgtttgtctcgtgtatgtatttcgatacaggaaaaaaatccgtatgagaaatcctagccgatttaaagttattcccaaactgaaaatcaaattacagattgacgacaattggaaatacattttcggtaacaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATCCACTAT--TT-T-G-T--GCATACGT-AAA-GTCGTG-GATG-TCCACCATG---AAGAA------------------------------------------------A--TGCA------------------TTCATATTTC--AATAC---CAAA--AAATCCGTATGTGAAATCCGAGCACGATTTAA-AC--TTTTTTTCAATGATA----------------TGTATG-TAAACATATATGGAAG-TGTTTTTAATT--TATA-------ATGT-TTTTTTATTT-C-------T----T--T-ACGTTT----AA-------T------A-CTA----A----------------AATATGT-----T------------AT-GTTT----TACTTGAAAAAAATTC--ATT--TA--------CATGTA-TA---AAAGTTGATG----ATTGGG--G-----GATG-A-AACAA----AA--GAG--AAATC---TTTTATCAG---AG-----AAATTTGGATGAACATTtt
gi|7 : aaTGTGGTTT-CA-TCAAT-ATTCG-TG-----GGC-AT-CAA-TTTTCGTGGATC----AGACAAAATTCACTGT--TT-T-G-T--GGATATGT-AAA-TTCATG-GATG-CCCACCATG---AAAAAAAG--TCACA-----T---------T---------------------CA--C-CA---GG-------------TTCATCTTTC--AATACAGAAAAA--TATTCCCTATGTGAAATCTGAGCCCGCTTTAA-AAAAGTTATTCA-----TA----------------TACTGG-T---CCT------AAGAGGTGTT--ACA--TACA-------AT-T-TTTTTTCGTT-TA-A----T-G-AA--T-A---TT----AA-------T------A-AT-----A----------------ATTA-GT-----A------------AT-T-TT----TTCTGGGAAAAATTTC--ATT-ATA--------CATGTATTG---ATTGCTCACG----ATCGAG--GACAATGATG-G-AGCAA---GAA--CAGGAAAATC---TTCTATCAG---AAGCACCAAACTTCGATGAACATTtgatttttatggttgagctcttagacaaaaccccaaaaatgtgttgttccaacgaatatgataaacaac
gi|8 : -CCCACCATG---AAAAAAG---TCACA-----T---------TGGTTCATCAATTGGAATGTCTCG--TGCA------------------TTTATATTTC--AATAAAGAAAAA--AA-TTTGTATGTGAAATCTGAGCCCGATTTAA-AA---TTATTCA-----T-----------------TATTAG-T---ACT------AAGGTGTGTT--ACA--TACA------------------TTTT-TA-AAAAAT-A-AT--T-A---TT----AA-------T------A-AT-----G----------------AT
gi|8 : T----TACCGGAAAAAGTTTC--ATT-GTA--------CATGTATTG---ATCGCTCATG----ACCGTG--GACAATGACG-G-AGCAA---GAA--CAGGAAAATC---TTCTATAAG---AAGCACCAAACTTCAATGAatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaattaccggaaaaagtttcattgtacatgtattgatcgctcatgaccgtggacaatgacggagcaagaacaggaaaatcttctataagaagcaccaaacttcaatga
gi|9 : cccaccatgaaaaaagtcacattggttcatcaattggaatgtctcgtgcatttatatttcaataaagaaaaaaatttgtatgtgaaatctgagcccgatttaaaattattcattattagtactaaggtgtgttacatacatttttaaaaaataattattaataatgatatctttgcaaatatatttcggaaatgtattctaattgaaaatgtgtaatgcctcagttatggttaaATATTTC--TATACAGATAAA--AAATCCATATGTGAAATCCAAGCCCGATT--A-AA--GTTATTCC-----TA----------------AATTG
gi|9 : tgtatctG-T---CCT------AAGTTGTGTT--ACA--TACATATACA-AT-T-TATTTTCTTT-TA-G----T-A-AT--T-A---AT----AA-------C------A-GT-----AT---------------GTGT-GTA----A------------AC-A-TT----TATCG---AAAGTGT---ATT-GTA--------aaaatcaaattacagattaacgacaattggaaatacaatatcggtaacagtcctaagttgtgttacatacatatacaatttattttcttttagtaattaataacagtatgtgtgtaaacatttatcgaaagtgtattgtaactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
gi|9 : tgtatctatatttctatacagataaaaaatccatatgtgaaatccaagcccgattaaagttattcctaaattgaaaatcaaattacagattaacgacaattggaaatacaatatcggtaaca-A---CT----GA-------T------A-AT-----G----------------TTTA-ATGCCTCA------------CT-G-TT----TACCG-AAAAAGTTTC--ATT-ATG--------CATGTACTA---ACGGTTCATG----ATGGCG--GACAATGACA-G-AGCAA---AAA--CAGGAAAATC---TTCTATCGG---AAGCACCAAACactgataatgtttaatgcctcactgtttaccgaaaaagtttcattatgcatgtactaacggttcatgatggcggacaatgacagagcaaaaacaggaaaatcttctatcggaagcaccaaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAATGCACTTCATTTAATTGATAGCCATCCTTTGTCTATGTGAAT