lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111 11111111111111111111111111111111111 1111111111111111111111111111111111111 111111111111111111111111111111111111111 11111
lowQualScore : 11 222222222 111 22222222222 444444444444444444444444444 111 33333333333333333333333333333333333333333333333333333333333333333333333333 111111111111 11111 1111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 11 2222 111 11 5555555555555555 11111 111111 11 4444444444444444444444444444444444 1 11 555555555555555 2222 555555555555555555 33333333333333333333333333333333333 555555555555555 22222 1 0000000000000000000000000000000000000 1 11 1 33333 11 111111111111111111111111111111111111111 11 2 11 111 33333 11111 222222 1 5555555 4444 111 1 22222 2222 00000
lowQualScore : 88 555555555 1 111 6 6 22222222222 666 999999999999999999999999999 8 8888 777 88888888888888888888888888888888888888888888888888888888888888888888888888 1 666666666666 3 666 4 1 999 4 4 444 44444 77 2222 1 2 5 99 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 6 5 44444 888 99 99 1 3 00 3 9999 99 1 3 1 66 000 1 1 11 4444444444444444 6 44444 777777 33 4 11 2 8888888888888888888888888888888888 0 77 0 0 33 444444444444444 3333 6 555555555555555555 2 22222222222222222222222222222222222 999999999999999 66666 33 33 44 2 0 4 3333333333333333333333333333333333333 7 6 2 0 66 22 2 0 8 55555 3 99 8 222222222222222222222222222222222222222 33 8888 4 11 444 77777 55555 4 33 2 77 1 3 4 6 6 111111 5 6 2222222 6 2222 6 222 6 5 55555 7777 00000 6
lowQualScore : .. ......... . ... . . ........... ... ........................... . .... ... .......................................................................... . ............ . ... . . ... . . ... ..... .. .... . . . .. ....................................................................................................................................................... . . . ..... ... .. .. . . .. . .... .. . . . .. ... . . .. ................ . ..... ...... .. . .. . .................................. . .. . . .. ............... .... . .................. . ................................... ............... ..... .. .. .. . . . ..................................... . . . . .. .. . . . ..... . .. . ....................................... .. .... . .. ... ..... ..... . .. . .. . . . . . ...... . . ....... . .... . ... . . ..... .... ..... .
lowQualScore : 33 000000000 4 777 7 7 00000000000 999 888888888888888888888888888 9 9999 333 66666666666666666666666666666666666666666666666666666666666666666666666666 3 555555555555 6 444 7 9 000 4 4 666 33333 99 1111 0 4 7 22 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 7 7 33333 222 22 22 0 5 00 5 7777 22 0 7 7 88 222 4 0 55 3333333333333333 0 88888 888888 55 0 88 2 8888888888888888888888888888888888 0 55 2 2 00 999999999999999 0000 0 555555555555555555 2 77777777777777777777777777777777777 000000000000000 00000 88 88 55 2 0 5 8888888888888888888888888888888888888 0 0 5 0 88 00 2 0 2 66666 0 22 0 222222222222222222222222222222222222222 88 4444 0 00 000 66666 44444 2 55 5 00 0 7 0 0 0 555555 5 0 0000000 0 5555 0 555 0 0 00000 0000 00000 0
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---G-TTACATC-TA------AC---GCTAT-T-TGTT-----------TACT-------GGATAGATATTCCNTAGAA--TTTGAGGACAAT-A-AC----GT-TTTTCATA---AA--A--T-CCTAAAATCG-GTCTC-TGTN------ACTC--T--ATTGTTGTAAGTTC---CC----TA-T-GC---ACGTGATTCAGGCACCAGTAGTCC-A-T-CAA-ATGCGCGGGTT--CTCGGTATTTGGTTGCGTCGTC-TTT--AAATGTAACCGC----TTTN-G--A-AAATGCCGCGTCTGAATGATGNT--------CAACG---CAAC--AACG--CGATT---------G---GA-GT-----------------C-------------------------A------AT---TGC-A-AG-AGA-----TTTNAATGTT--GCACAA--AGCACNNTATCT-TN-C--CTTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAAAN--CAC-CGCG--ACGTCAGCAGCACAAGATCGCTTCANCCGATTGCGTN--CTTTGTCGG--TGC-TCGTCTTCGTCAACGATTCAC-AACANCGTCATCTACAGCATCTGACATTC-TG-GGCNCTTCAGAATATCAGATCAGACTGTTTGCAATCGACTAC-GGATGCTGGGATTAAAGCG----CGCG--GAC-----CNGTCG-TG-----GCATTGTTCCGC-AC---ACT--GCAACATTGCCGGAACCGACTTCAATGGT-CTCGGACTC-TN-----AGANNACG--GNCACGGCAACGCCG--GNGGACAGTTTNGTT-CAGCGATGAATCTCGATTTTTACTNCAGANGTCTG-ATGGAAGACNCGAGAGT-GT------AT----AGGAT-GCCAAAAT---GAAGC-GTTTTGCGCAA-AA-TCGCATC--CA---GGAGGC-TGACC-G-G-TTTAGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCNTATACAGGCAGGACNGCATTGGTTCGCATNGAGNNTACTTTGACGGCTAAACGGTATATTGGTGAAGTCATGTATACAGCCATNNGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
Reference ( gi|1 ) : GAGTGAAT--CACCTGATTAC-----T---CCTT---G-TTACATT-TA------AT---GCTAT-T-TGCT-----------CATT-------GGTTAGATATCCCATAGAT--TTTGAGGACAATGATAT----GTGTTTTCACA---AA--A--T-CCTAAAATCA-GTCTC-TATT------ACTC--T--ATTGTTGTAAGTTC---CC----TA-T-GC---ATGTGATTCAGGCACCAGTAGTCC-A-T-CAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAATGTAACCAC----TTTA-G-GA-AAATGCCATCTTTGAATGATGTT--------CAACA---CAAC--AATG--CAATT---------G---AA-GT-----------------C-------------------------A------GT---TGC-A-AG-AGA-----TTTAAATGTT--GCACAA--AGCACCGTATCTATT-C--TTTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGAC--CAT-CATG--ATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGCCAAAGTATCTCATCTTCATTAAC-ATTCAC-AACAGTGTCATCTACAGCATCTGCCATTCCTG-GGCCCTCCAGAATATCACAACAGATTGTTCACAATCGATTAAGGGAAGCTAGGATTAAA-------TGCA--GAC-----TAGTTGATG-----GCATTGTTCTG--AT---ACT--GCAACATCACCAGAACCGACTTCAATGAT-CTTAGACTC-CG-----AGATTATG--GACATGGCAACCTTG--GGGAACAATTTGGTT-CAATGACAAATCTCAATTTTTACTGCAGACGCCTT-ATGGAAGACTCAAGAGT-GT------AT----AGGA--GTTAAAA----GAAGC-ATTTTGTACAA-AA-T-GCATC--CA---GGATGT-GGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCAACAAAACAATATCAGACC
gi|15 : GAATGCCACCTGCTTAT-----T---CCAT---G-TCACATC-TA------AC---GCTAA-TATGT-------------ACC-------GAATAGATATTGTCTAGAA--TCTGAGGACAATAAAAC----GT-TTATTATA---CA--G--T-CCTACAATT--GTCTC-TGTG------GCTT--TCAGTTGTTGTAAGTTC---CTAAAATA-T-GCCAGAAGTGAT
gi|11 : aAAT--CATCTGACTACATCAGTACACCTT---G-TTACAAT-TACATCTTATTCTGTTGT-T-TACTGAATAGATATTCATTAGATACTGGATAGATATTCATTAGAA--TTTGAGGATGATAAAAC----TTGTTTACATA---TA--A--T-CCTAAAATCA-ATCTTGTATTATTTAAACTC--TTGA-TGTTGCAAGTTC---C
gi|14 : T--CGCCGGATTAC-----T---CTTT---G-TTACATC-TA------TC---GCT-T-T-TATT-----------TACT-------GGtaaataaatcagacgt
gi|2 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctGATTTT-----T---CACT---GATTCTATTCTA------AT---GCTAT-T--GTT-----------TACT-------G--TACACGTCTTCTACATAATTTGAGGACAATGA----------------------A--A-----CTAAAATCG-ATCTC-TTTA------ATTG--TTGATAGTTGTAAGTTC---CT----AA-T-GT---ACGTGATTCAGGAACCAGTAGTCG-A-T-CAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAATGTAACCAT----TTTT-GTGAGAAATACCGCATCTGAACAATGCT--------CAAAG---AAAG--AACG--CAATTTGACGACTGG---AA-GCAGGTGTGTAACAATTTGC-------------------------A------GT---TGC-A-AG-GGA-----TTTCAGTGTT--GCATAA--ATCACGATA--TATCGC--CTATGAAAC--ATA--AA-----------AACAAATGATAGTCACTAAGTAGGTAGATGGCA--CGTG--GTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGTC------------GTATTT--------TCAACTATTCTC-AACATCGTCACCTACTTCAGCTGTCATTCCTGTGATTCTTT-GAATATCAGTCCAGTCTGTTTGCAGCCAACTA-------CTGGGATTAGAGCG----CGCA--GAC-----CGGTCG-TA-----ACATTGTTC---------------CAACTTCTT---------CTTCAATGGT-CTCGGACTC-AT-----AGAGTATG--GTCACAGCAACGCCG--AAGGACAGTTTGGTT-CAGGGATGATTCTCAACTTTGACTGCGGATACTTC-A--GAAGacaataaaactcctaaaaattctcaattgctgtaagttccaaatgcacgttatccagaca
gi|3 : aaaaaagagtaaagcataacatgAC-----T---CTTTTCTG-TGACATC-TA------TG---GCTAT-T-GAAT------------AGT-------AGATGCATGTATTACAGAA--TTTGTGGA-------------GTGTTTTCGTA---AA--A--TTCCTGCAATTGTGTCTT-CGTA------ACTCACC--ATTTTTGTTAATTC---C-----TA-T-A-----------TCACGCTCCAGTAGTTCTACT-TAA-TTGCTTG--TT--TTCTGTATT-GATTGCGTTGTC-CTT--ATAT-TGACAACCTTTTTTA-G----AAATACTGCATTTGAATAATACTTAAAGCAGCAACA---CAAA--GATGGTCGGTT---------GGACAG-GTGTTTTA-----------C-------------------------AACTTTTAT---TGCAA-AG-AAA-----TTCA---GTTGGGCACAA--AGC-CATTATC--TT-CGATTTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAA--C-T-CGCGCAAAGTCAACAGCAGAACATTGCT--AATCCATTGCG--------GTCA-------TCA-----AACAAC-GATCACAAACAGTGTCGTTTACAGATTATGACATTgtacagacgccaaaatggattgatttctacttcagaggtatgatggacgacgcagaatgttcaactattctcaacatcgtcaacatcgtgaacgttttgcgcaaaattgcatccaattggaggctgacaagttttgagggtagtgttatgatggggacaataatatcatatacaggcaagacaatattggttcacatagaatttacttgacggctatattggtaaagtcatatagtcattcgtagttcca
gi|4 : TT---G-TCAAGAT-TA------CT---ACTATAT-CG-T-----------AACT-------GGCTAAATATTCTTTAGAA--TTTGAGGACA----------------TT---A---AA--A--T-CCTAAAATCG-GTCAT-TGTA------ACTC-----------GTAATTTC---TC----TAAT-GC---AAGTGATTCAGGTACAAGTAGTCT-A-T-CAA-Attaaatcaaacagctcacaatccactccctagagcgcacatatcttccgcacactgcaatattgctggattcgtcatcaatgattctgagactcataaaatgacgcagaaatgctaacaagcagttttgtttcaacgatgaatttcgatttttactcataaacctgaattgaaatctcgtgtattggatgccaaaatgaagttttgaacaaaattacatccacaagacataccggttttagaggggagatgttacagtg
gi|10 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggA------AC---GTTAC-T--GTT-----------TATT-------GGATAGGTATTCCATAGAA--TTTGAGGACA----------------TT---A---AA--ACCT-CCTAAAATC----------TT------AATC--C------TTG-AAACTCGGTCC----TA-TAGC---ATGTGATTCAGGCACCAATAGTTT-A-T-CGA-AAGTGCAGGTT--CTTGGTATCGGGTTatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|9 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagA------AC---GTTAC-T--GTT-----------TATT-------GAT-AGGTATTCCATAGAA--TTTGAGGACA----------------TT---A---AA--ACCT-CCTTAAATC----------TT------AATC--C------TTG-AAACTCGGTCC----TA-T-GC---ATCTGATTCAGGCACCAATAGTTT-A-T-CGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTtttcatct
gi|12 : aaaaaaaagaaacgcatatagtaaaatacttttttgccgagtctttttgaaatag------AC---GCT-C-T-TGTT-----------TGCT-------GGTTGGATATTTCATAGAA--TTTTAGGACAAT-----------------ACA---AA--------------TCG-GTCTC-TGTA------ACTC--TTAATTCTTTTAAGTTC---CT----AA-A-AC---ACGTTATTCGGGCACCAGCAGTGC-A-TTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAATTTAACCGC----TTTgtgaa
gi|8 : AGAT--TTAGAGGACAGTCATACAATAGAATTTTCATACCCAATCA--T-CTCAAATTCG-ATCCC-TTTC------ACTT--G--ATTGTTGTAAATTC---CG----AA-T-GC---ACGTTATTCAGGCACCAGTAATCC-A-T-CAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAATG------C----TT-----------TGCC-----TGAATGATAGT--------CAACG---CAAC--AACG--CGATT---------G---GA--------------------C-------------------------G------AC---TGG-A-AGCAGA-----Tttgagaa
gi|13 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaagccagattacactttgatacatctaaAC----GTGTTCTCATA---AA--A--T-CCTAAAACGG-ATGTT-TATA------ACTC--TCAATTGTTGTAAGTT----CC----TATT-GC---ACGTGATGCAGGGACC-----------T-CAA-ATGTAgtgtaaagg
gi|14 : aATA---AA--AC-T-CCTAAAA-----------ATT-------CTC--A--ATTGCTGTAAGTTC---CA----AA-T-GC---ACGTTATCCAGACAactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|6 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagcttcgccggattactctttgttacatctatcgcttttatttactggacaTTT---CC----TAAT-GC---ATTTGATTCAGGCACC-GTAGTCA-A-T-CAA-A----------------ATAT----CTGCGTTGTC-TTT-----TG--------------A-G----AAATG-------------ATGTT--------TAACG---CAAC--AACG--CAATT---------G---GACGT-----------------CTGGAAGCAGGTGCGTCACAATTTGCA------GC---TGC-A-AA-AGA-----TTTTAATGTT--GCAAAA--CGCTCTTTAACT-TG-C--CTTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAAC--CACGCGTG--ACGTCAGCAACACAAGATCGCTTCATCCGATTGCGTAATCTTTGTCGA
gi|4 : aaaatctgtgactctcgaataGTAGTC-TATCAAAATGTAACCGC----TTTTTG-AA-AAATGCCGTGTCTGAATGATGG---------CAACAGGACAACTGAAAG--CAGGT---------G---T--GT-----------------C-------------------------A------CTATTTGC-AGAG-AGAATATATTTCAATATT--GCACAA--AACACCGTATCT-TG-C--CTTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCcgattcacaactgattcatcagactgtttgcaatcgactacgggatgttgggattggagcg
gi|17 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaa-----------------C-------------------------A------AT---TGA-A-AG-AGA-----ATTAAATATT--GCACAA--AGCACTAAATTTTGC-C--TTTTTG---AAATATCAAtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|20 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttg-AAA-----TTTAA-------GGACAATAATCACCATATCTTGT-C--TTT-AGAGCAGATATTAACACCATAGTTCAA
gi|4 : tctttcG--ATATGAACAACA------TGGTTCAACAAATTATCATCGCTTTATCCGACTGCGTCGTCTTCGTCAATGATTCAC-AACGGCGTTATCTACAACATCTGGGAT-------GCAC---AGAATATCAGATGAGACTGTTTGCAATGGACTACCGGATGCAGGAATTAAAGCA----CGCG--GAC-----CTATTTCTG-----GCATTGTTCTG--AC---TCT--CCAACATTAACGGAACCGACTTC-TTGGT-CTTAGTCTC-------------------ACA--GCAACGCTG--GCGGACAGTTTGGTT-CAGCGATGAATCTCGATg
gi|16 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcaTCTTTGTCAACGATTCAC-AACATAGTCATTTCCAGCATTTGATATTCGTG-
gi|7 : acaagtatacaaatctcgtgttgtcaggagctcagaatcactgtacctattactCAGAATATCAGATTAGACTATT--------------GGATGCTAGGATTAAAGTACATGTACAAAGACACATGTAGT-GATGTACTTGCATTGTTCTGTCATCTGACTCTGCAACATTGCTGGAACCAACTTCAGAGGT-ATCGGACTC-TGGACATAGAAAATG--ACCAAGGCTATGCTGTTGGGA-CAGTTTTGCT-CAGTGATGAATCTCGATTTTTATCTTAGGCGTCTG-GTGGAAGAATCG-GAGTAGG------AT----AGG-----------------------TTG--CAA-AA-TCACATC--TA---GGA-GTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAGtttgcactcaaccatggaatgctgggattacagcg
gi|6 : cacttgaccttgcagcacaaatttgCATCAGACTGTTTGCAATCGACTACGGGATGTTGGGATT
gi|3 : aaaatctgtgactctcgaatatttcctaatgcatttgattcaggcaccgtagtcaatcaaaatatctgcgttgtcttttgagaaatgatgtttaacgcaacaacgcaattggacgtctggaagcaggtgcgtcacaatttgcagctgcaaaagattttaatgttgcaaaacgctctttaacttgcctttggaacagactgcaacaaaatggcacaacaaatgattgtcacagagcagataaaccacgcgtgacgtcagcaacacaagatcgcttcatccgattgcgtaatctttgtcgacgattcacaactgattTTCCGC-AC---ACT--GCAATATTGCTGGATTCGTCATCAATGATTCTGAGACTCATA-----AAATGACGCAGAAATGCTAAC--------AAGCAGTTTTGTTTCAACGATGAATTTCGATTTTTACT-CATAAACCTGAATTGAAATCTC----GT-GT------AT----TGGAT-GCCAAAAT---GAAG---TTTTGAACAA-AATT-ACATCCACA---AGACAT---ACC-G-GTTTTAGAGGGGggagcg
gi|2 : actcttttctgtgacatctatggctattgaatagtagatgcatgtattacagaatttgtggagtgttttcgtaaaattcctgcaattgtgtcttcgtaactcaccatttttgttaattcctatatcacgctccagtagttctacttaattgcttgttttctgtattgattgcgttgtccttatattgacaaccttttttagaaatactgcatttgaataatacttaaagcagcaacacaaagatggtcggttggacaggtgttttacaacttttattgcaaagaaattcagttgggcacaaagccattatcttcgatttttaatcggatattaaaggcatagttcgttaaatgatcttatagagcataaaactcgcgcaaagtcaacagcagaacattgctaatccattgcggtcatcaaacaacgatcacaaacagtgtcgtttacagattatgacattttaaatcaaacagctcacaatccactccctagagcgcacatatcATTTCTACTTCAGAGGTATG-ATGGACGACGCA-GAAT-GTTCAACTATTCTCAACATCGTCAACATCGTGAA-C-GTTTTGCGCAA-AA-TTGCATC--CAATTGGAGGC-TGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAagatgttacagtg
gi|5 : aaaaaagagtaaagcataacatggatttttcactgattctattctaatgctattgtttactgtacacgtcttctacataatttgaggacaatgaaactaaaatcgatctctttaattgttgatagttgtaagttcctaatgtacgtgattcaggaaccagtagtcgatcaaatgcacggtctctcgatattttattgcattgactttaaatgtaaccatttttgtgagaaataccgcatctgaacaatgctcaaagaaagaacgcaatttgacgactggaagcaggtgtgtaacaatttgcagttgcaagggatttcagtgttgcataaatcacgatatatcgcctatgaaacataaaaacaaatgatagtcactaagtaggtagatggcacgtggtttcagctgcacaagaccgctttatcagattgcgtcgtattttcaactattctcaacatcgtcacctacttcagctgtcattcctgtgattctttgaatatcagtccagtctgtttgcagccaactactgggattagagcgcgcagaccggtcgtaacattgttccaacttcttcttcaatggtctcggactcatagagtatggtcacagcaacgccgaaggacagtttggttcagggatgattctcaactttgactgcggatacttcagaaggtacagacgccaaaatggattgGCAGAGGTCT------AAGACGGAAGAGG-GT-------T----AGGAA-GCCAAAATT--AATGCTATGGTGTGCAA-TA-TTGAATC--CA---GGAGGC-TGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|19 : gAAGAGT-GT------AT----AGGA--GCCAAAA----TTAAT-GCTATGTGCAATAT-T-GAATC--CA---GGAGGC-TGACC-T-G-Tgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ACGATAGTAATTTTTCGCTGAATCTTTTCAAACAATCTCCATATACATTTTAGGGGATATAAAATAAATCGCTTGATTACACTTTGATACATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 11 222222222 111 22222 777777777777777777777777 111111111 33333333333 1111111 111 333333333333 333333333333333333333333333333333333333333333333333333333333333333333333 11111 3 99999999999999999999 111 77777777777777777777777777777 2222222222 666666666666666666666666666666 4444444 444444444444444444 222222222222222 222222222222 11 11111 3333 111 111 11 4444 22222
lowQualScore : 11 222222222 000 4 2 33333 666 555 11 33 444444444444444444444444 55 3 666 0 333333333 88888888888 2222222 6 3 555 1 55 4 4 3 1 2 66 7777 4 4 66 111 0 5 111111111111 555555 22 77 999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 44444 1 99 1 22 5 1 8888 4 1 33 2 44 22 1 1 0 2 44 22 1 55555555555555555555 1 5 3 1 5 1 99 6 111 22222222222222222222222222222 888 2 1 1111111111 0 444444444444444444444444444444 6666666 1 0 777 1 1 0 8 1 0 333333333333333333 2 22 8 1 8 1 8 1 555555555555555 4 333333333333 66 22222 2222 7 6 9 111 3 000 6 2 0 1 1 0 1 222 7 44 3 0 4444 22 3 4 2 3 77777
lowQualScore : .. ......... ... . . ..... ... ... .. .. ........................ .. . ... . ......... ........... ....... . . ... . .. . . . . . .. .... . . .. ... . . ............ ...... .. .. ........................................................................ . . . . ..... . .. . .. . . .... . . .. . .. .. . . . . .. .. . .................... . . . . . . .. . ... ............................. ... . . .......... . .............................. ....... . . ... . . . . . . .................. . .. . . . . . . ............... . ............ .. ..... .... . . . ... . ... . . . . . . . ... . .. . . .... .. . . . . .....
lowQualScore : 00 777777777 000 0 1 77777 444 888 44 22 111111111111111111111111 00 6 000 8 111111111 22222222222 4444444 7 3 888 6 33 4 4 6 1 2 99 5555 2 4 99 444 2 0 111111111111 777777 77 99 333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7 7 33333 0 22 7 00 7 0 1111 0 7 11 5 66 88 0 2 0 0 55 22 0 88888888888888888888 7 7 0 4 7 0 22 7 777 00000000000000000000000000000 444 3 7 0000000000 9 444444444444444444444444444444 2222222 4 8 888 0 0 8 0 4 8 666666666666666666 8 44 0 0 0 4 8 0 666666666666666 9 111111111111 66 11111 5555 5 3 0 777 7 222 7 2 8 0 0 7 0 777 3 33 7 7 3333 00 0 0 5 0 00000
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGAT---ATTCCATAGAATTTGAGGACAAT--AA--C-T---TTTT-CATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGC-TTT-T--G---GA--AATGCCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-TGC-C--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGCGACGTCAGCAGCACAAGATCGCTTCATCCGATTGCGT-------------------CGTCTTCGT-CAACGATTCACAA-CANCG--TCATCT-ACAGC---ATCTGNCATT-C-T--GGC--TTCAGAAT--AT-CAGATCAGACTGTTCGCAATCGACT-A-C-GGA-TGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-------ACACTGCAACATTGCCGGAACCGACTTCAATGG-TCTCGGACTC-TG-----AGANNATGG-CACGGCAACGCTGGCGG-ACAGTTTGG-TTCAGCGATGAATCTCGATTTTTACTNCAGANGTCTG-ATGGAAGACTCGAGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Reference ( family-948 ) : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGAT---ATTCCNTAGAATTTGAGGACAAT--AA--CGT---TTTT-CATA---AA--AT-CCTAAAATCG-GTCTCTGT--------NACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CAA-ATGCGCGGGTT--CTCGGTATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGC-TTT-N--G---AA--AATGCCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACNNTATCT-TNC-C--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAAANCAC-CGCGACGTCAGCAGCACAAGATCGCTTCANCCGATTGCGT--NCTTTGTC--GGTG-CTCGTCTTCGT-CAACGATTCACAA-CANCG--TCATCT-ACAGC---ATCTGACATT-C-TG-GGCNCTTCAGAAT--AT-CAGATCAGACTGTTTGCAATCGACT-A-C-GGA-TGCTGGGATTAAAGCGCGCG------GAC-CN-G--TCG-TG--------GCATTGTTCCGC------ACACTGCAACATTGCCGGAACCGACTTCAATGG-TCTCGGACTC-TN-----AGANNACGGNCACGGCAACGCCGGNGG-ACAGTTTNG-TTCAGCGATGAATCTCGATTTTTACTNCAGANGTCTG-ATGGAAGACNCGAGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATCGCATCCA---GGAGGCTGACC-G-G-TTTAGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCNTATACAGGCAGGACNGCATTGGTTCGCATNGAGNNTACTTTGACGGCTAAACGGTATATTGGTGAAGTCATGTATACAGCCATNNGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|1 : GAAT--CACCTGATTAC-----T---CCTT---GTTACATTTA-ATGCTATT----TGCT---CATTGGTTAGAT---ATCCCATAGATTTTGAGGACAAT--GA--TATGTGTTTT-CACA---AA--AT-CCTAAAATCA-GTCTCTAT--------TACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ATGTGATTCAGGCACCAGTAGTCC-AT-CAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAAT--GTAACCAC-TTTAG--G---AA--AATGCCATCTTTGAATGATGTTCAACACAAC--AAT-----GC----------AATTGAA---------GT------------------CA--G------T-------T-GCA-A-G-AGA-----TTTAAATGTTG--CACAAAGCACCGTATCTATTC-T--TTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGACCAT-CATGATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGCCAAAGTATCTCATCTTCAT-TAAC-ATTCACAA-CAGTG--TCATCT-ACAGC---ATCTGCCATTCC-TG-GGCCCTCCAGAAT--AT-CACAACAGATTGTTCACAATCGATTAA-G-GGA-AGCTAGGATTAAA---TGCA------GAC-TA-G--TTGATG--------GCATTGTTCTG-------ATACTGCAACATCACCAGAACCGACTTCAATGA-TCTTAGACTC-CG-----AGATTATGGACATGGCAACCTTGGGGA-ACAATTTGG-TTCAATGACAAATCTCAATTTTTACTGCAGACGCCTT-ATGGAAGACTCAAGAGTGT------AT----AGGA--GTTAAAA----GAA-GC-ATTTTGTACAAAAT-GCATCCA---GGATGTGGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCA
gi|10 : gagtA-ACGTTACT-----GTT---TATTGGATAGGT---ATTCCATAGAATTTGAGGACATT--AA--AAC---CT---CCTA---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-TAGC---ATGTGATTCAGGCACCAATAGTTT-AT-CGA-AAGTGCAGGTT--CTTGGTATCGGGTTacaaaacaatatcagacc
gi|11 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagAAT--CATCTGACTACATCAGTACACCTT---GTTACAATTACATCTTATTCTGTTGTT---TACTGAATAGAT---ATTCtttcatct
gi|11 : TATT----CATTAGATACTGGATAGAT---ATTCATTAGAATTTGAGGATGATAAAA--CTT---GTTTACATA---TA--AT-CCTAAAATCA-ATCT-TGTATTATTTAAACTC--T---TGATGTTGCAAGTTCCattagatactggatagatattcattagaatttgaggatgataaaacttgtttacatataatcctaaaatcaatcttgtattatttaaactcttgatgttgcaagttcctaaataaatcagacgt
gi|12 : aatcatctgactacatcagtacaccttgttacaattacatcttattctgttgtttactgaataga-ACGCT-CT----TGTT---TGCTGGTTGGAT---ATTTCATAGAATTTTAGGACAAT--A-----------------------------C--AAATCG-GTCTCTGT--------AACTC--TTAAT--TCTTTTAAGTTCCT----A-A-A-AC---ACGTTATTCGGGCACCAGCAGTGC-ATTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAAT--TTAACCGCTTTT-T--G---AG--AAtaaataaatcagacgt
gi|13 : --AA--CGTG--TTCT-CATA---AA--AT-CCTAAAACGG-ATGTTTAT--------AACTC--TCAAT--TGTTGTAAGTT-CC----T-ATT-GC---ACGTGATGCAGGGACC
gi|13 : C-CTC--AAAT--GTAACTGC-TTT-T--T---AAGAAATATCGCGTCTGCATGATGAACAACATAATTGAA-------C----------GACTGGA---------tcaaatgtaactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|14 : aacgtgttctcataaaatcctaaaacggatgtttataactctcaattgttgtaagttcctattgcacgtgatgcagggaT--CGCCGGATTAC-----T---CTTT---GTTACATCTA-TCGCT-TT----TATT---TACTGGACA-ATAAAACTCCTAAAAATTaacaggtgtcacaatatgcagttg
gi|14 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctCTC--A--AT--TGCTGTAAGTTCCA----A-A-T-GC---ACGTTATCCAGACActcaattgctgtaagttccaaatgcacgttatccagaca
gi|15 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagcttcgccggattactctttgttacatctatcgcttttatttactggacaataaaactcctaaaaattGAATGCCACCTGCTTAT-----T---CCAT---GTCACATCTA-ACGCTAATA---TGT-----ACCGAATAGAT---ATTGTCTAGAATCTGAGGACAATAAAA--CGT---TTAT-TATA---CA--GT-CCTACAATT--GTCTCTGT--------GGCTT--TCAGT--TGTTGTAAGTTCCTAAAAT-A-T-GCCAGAAGTGAT
gi|16 : aTCTTTGT-CAACGATTCACAA-CATAG--TCATTT-CCAGC---ATTTGATA-------------TTCG-------------------TGTTTGCACTCAACC-A-T-GGAATGCTGGGATTACAGCG
gi|17 : acaagtatacaaatctcgtgttgtcaggagctcagaatcactgtacctattact------------------CA--A------T-------T-GAA-A-G-AGA-----ATTAAATATTG--CACAAAGCACTAAATTT-TGC-CTTTTTG----AAATATCAA
gi|18 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttgAAT--CGCTTGATTAC-----A---CTTT---GATACATCT
gi|19 : acgatagtaatttttcgctgaatcttttcaaacaatctccatatacattttaggggatataaaataCAGAGGTCTA-A------ACGGAAGAGTGT------AT----AGGA--GCCAAAAT---TAA--T-GCTATGTGCAATATTGAATCCA---GGAGGCTGACC-T-G-T
gi|2 : ggggTCTA-ATGCTATT-----GTT---TACTGTACACGT---CTTCTACATAATTTGAGGACAAT--GA---------------------A--A---CTAAAATCG-ATCTCTTT--------AATTG--TTGAT--AGTTGTAAGTTCCT----A-A-T-GT---ACGTGATTCAGGAACCAGTAGTCG-AT-CAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAAT--GTAACCAT-TTT-T--GTGAGA--AATACCGCATCTGAACAATGCTCAAAGAAAG--AAC-----GCAATTTGAC--GACTGGAAGCAGGTGTGTAACAATTTG---------CA--G------T-------T-GCA-A-G-GGA-----TTTCAGTGTTG--CATAAATCACGATATAT-CGC-C--TATGAAACA--TA-----AA--------AACAAATGATAGTCACTAAGTAGGTAGATGGCACGTGGTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGT-------------------CGTATTT-T-CAACTATTCTCAA-CATCG--TCACCT-ACTTC---AGCTGTCATT-CCTGTGATTCTTT-GAAT--AT-CAGTCCAGTCTGTTTGCAGCCAACT-A-C--------TGGGATTAGAGCGCGCA------GAC-CG-G--TCG-TA--------ACATTGTTCCA---------ACTTC----TT-----------CTTCAATGG-TCTCGGACTC-AT-----AGAGTATGGTCACAGCAACGCCGAAGG-ACAGTTTGG-TTCAGGGATGATTCTCAACTTTGACTGCGGAT-------------ACTTCAGAAGGT------AC----A-GAC-GCCAAAAT---GGA-g
gi|2 : aaaaaagagtaaagcataacatggatttttcactgattctatATGGATT--GATTTCTACTTCAGAGGTATG-ATGGACGACGC-AGAATGTTCAACTATTCTCAACATCGTCAACATCGTGAA--C-GTTTTGCGCAAAATTGCATCCAATTGGAGGCTGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAttgatttctacttcagaggtatgatggacgacgcagaatgttcaactattctcaacatcgtcaacatcgtgaacgttttgcgcaaaattgcatccaattggaggctgacaagttttgagggtagtgttatgatggggacaataatatcatatacaggcaagacaatattggttcacatagaatttacttgacggctatattggtaaagtcatatagtcattcgtagttcca
gi|20 : aaaaaagagtaaagcataacatggatttttcactgattctattctaatgctattgtttactgtacacgtcttctacataatttgaggacaatgaaactaaaatcgatctctttaattgttgatagttgtaagttcctaatgtacgtgattcaggaaccagtagtcgatcaaatgcacggtctctcgatattttattgcattgactttaaatgtaaccatttttgtgagaaataccgcatctgaacaatgctcaaagaaagaacgcaatttgacgactggaagcaggtgtgtaacaatttgcagttgcaagggatttcagtgttgcataaatcacgatatatcgcctatgaaacataaaaacaaatgatagtcactaagtaggtagatggcacgtggtttcagctgcacaagaccgctttatcagattgcgtcgtattttcaactattctcaacatcgtcacctacttcagctgtcattcctgtgattctttgaatatcagtccagtctgtttgcagccaactactgggattagagcgcgcagaccggtcgtaacattgttccaacttcttcttcaatggtctcggactcatagagtatggtcacagcaacgccgaaggacagtttggttcagggatgattctcaactttgactgcggatacttcagaaggtacagacgccaaaAATCACCATATCT-TGT-C--TTTAGAGCAGATATTAACACCATAGTTCAA
gi|3 : tctttcaaatttaaggacaatAC-----T---CTTTTCTGTGACATCTA-TGGCTATT-----GAA---TAGTAGATGCAT---GTATTACAGAATTTGTGGA-----------GTG--TTTT-CGTA---AA--ATTCCTGCAATTGTGTCTTCGT--------AACTCACC--AT--TTTTGTTAATTCC-----T-A-T-A-----------TCACGCTCCAGTAGTTCTAC-TTA-AT-TGCTTGTT--TTCTGTATT-GATTGCGTTGTC-CTT--ATATTGACAACCTT-TTT-T--A---GA--AATACTGCATTTGAATAATACTTAAAGCAGC--AAC-----ACAAAGATGGTCGGTTGGACAGGT----GTTTTA--------------CA--ACTTTTAT-------T-GCA-AAG-AAA-----TTCA---GTTGGGCACAAAGC-CATTATCT-TCGAT--TTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAACTCGCGCAAAGTCAACAGCAGAACATTGCT--AATCCATTGCG---------------------GTCATCAAACAACGAT-CACAAACAGTG--TCGTTT-ACAGA---TTATGACATT-T-T---------------------AAATCAAACAGCTCACAATCCACT-C-C-------------CTAGAGCGCACA------TAT-C-------------------------TTCCGC------ACACTGCAATATTGCTGGATTCGTCATCAATGATTCTGAGACTCATA-----AAATGACG----CAGAAATGCTAACAA-GCAGTTTTGTTTCAACGATGAATTTCGATTTTTACT-CATAAACCTGAATTGAAATCTC----GTGT------AT----TGGAT-GCCAAAAT---GAA----GTTTTGAACAAAATTACATCCA---CAAGACATACC-G-GTTTTAGAGGGGg
gi|4 : ACTGGCTAAAT---ATTCTTTAGAATTTGAGGAC-AT-------------------TA---AA--AT-CCTAAAATCG-GTCATTGT--------AACTC-------------GTAATTTCTC----TAA-T-GC---AAGTGATTCAGGTACAAGTAGTCT-AT-CAA-Aagatgttacagtg
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaGTAGTC-TATCAAAAT--GTAACCGC-TTT-TTGA---AA--AATGCCGTGTCTGAATGATGG-CAACAGGAC--AACTGAAAGC----------AGGTGT----------GT------------------CACTA------T-------TTGCAGA-G-AGAATATATTTCAATATTG--CACAAAACACCGTATCT-TGC-C--TTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaaATCGCTTTATCCGACTGCGT-------------------CGTCTTCGT-CAATGATTCACAA-CGGCG--TTATCT-ACAAC---ATCTGGGAT--------GCA---CAGAAT--AT-CAGATGAGACTGTTTGCAATGGACT-ACC-GGA-TGCAGGAATTAAAGCACGCG------GAC-CT-ATTTC--TG--------GCATTGTTCTG-------ACTCTCCAACATTAACGGAACCGACTTC-TTGG-TCTTAG--TC-T----------------CACAGCAACGCTGGCGG-ACAGTTTGG-TTCAGCGATGAATCTCGATtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|5 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcCAGAGGTCT------AAGACGGAAGAGGGT-------T----AGGAA-GCCAAAAT---TAATGCTATGGTGTGCAATATTGAATCCA---GGAGGCTGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|6 : ggTCTGT--------GACTC--T---------CGAATATTTCC----T-AAT-GC---ATTTGATTCAGGCACC-GTAGTCA-AT-CAA-A----------------ATAT----CTGCGTTGTC-T-------------------TTT-G--A---GA--AATG-------------ATGTTTAACGCAAC--AAC-----GC----------AATTGGAC--------GTCTGGAAGCAGGTGCGTCACA--A------TTTGCAGCT-GCA-A-A-AGA-----TTTTAATGTTG--CAAAACGCTCTTTAACT-TGC-C--TTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAACCACGCGTGACGTCAGCAACACAAGATCGCTTCATCCGATTGCGT--A-----------------ATCTTTGT-CGACGATTCACAA-Cgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
gi|6 : aaaaCGT-CAGCAA--CACAA-GATCGCTTCATCCGATTGCGTAATCT----TT-G-TC-GACGATTCACAACTGATTCA--TCAGACTGTTTGCAATCGACT-A-CGGGA-TGTTGGGATTGGAGCGtgattcatcagactgtttgcaatcgactacgggatgttgggattggagcg
gi|7 : aaaatctgtgactctcgaatatttcctaatgcatttgattcaggcaccgtagtcaatcaaaatatctgcgttgtcttttgagaaatgatgtttaacgcaacaacgcaattggacgtctggaagcaggtgcgtcacaatttgcagctgcaaaagattttaatgttgcaaaacgctctttaacttgcctttggaacagactgcaacaaaatggcacaacaaatgattgtcacagagcagataaaccacgcgtgaCAGAAT--AT-CAGATTAGACTATT----------------GGA-TGCTAGGATTAAAGTACATGTACAAAGACACATG--TAG-TGATGTACTTGCATTGTTCTGTCATCTGACTCTGCAACATTGCTGGAACCAACTTCAGAGG-TATCGGACTC-TGGACATAGAAAATGACCAAGGCTATGCTGTTGGGACAGTTTTG-CTCAGTGATGAATCTCGATTTTTATCTTAGGCGTCTG-GTGGAAGAATCG-GAG----------T----AGGAT--------------A-G--GTT----GCAAAATCACATCTA---GGAGTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAG
gi|8 : cacttgaccttgcagcacaaatttgGCCAGATTAC-----A---CTTT---GATACATCTA-AAG----------ATT---TAGAGGACAGTC---ATACAATAGAATTT------------------------T-CATACCCAATCAT-CTCAAATTCG-ATCCCTTT--------CACTT--G--AT--TGTTGTAAATTCCG----A-A-T-GC---ACGTTATTCAGGCACCAGTAATCC-AT-CAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAAT--------GC-TTT--------------------GCCTGAATGATAGTCAACGCAAC--AAC-----GC----------GATTGGA-----------------------------CG--A------C-------T-GGA-A-GCAGA-----T
gi|9 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaaA-ACGTTACT-----GTT---TATTG-ATAGGT---ATTCCATAGAATTTGAGGACATT--AAAACCT---CCTT--------AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-T-GC---ATCTGATTCAGGCACCAATAGTTT-AT-CGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTgtgtaaagg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222222222 111 22222 888888888888888888888888888 11111111 44444444444 1111111 1111 2222222 111111111 333333333333333333333333333333333333333333333333333333333333333333333333 11111 444444444444444444 99999999999999999 22222222 666666666666666666666666666666 44444444 111 111 777777777777777777777777777777777777 222 1111 22222 1 111111 66666666666666666666666666666666666666666666666 111 111 33 2222 22222
lowQualScore : 11 222222222 000 4 33 55555 666 1 22 1 777777777777777777777777777 44 3 99999 1 11111111 00000000000 2222222 6 3 555 1 55 4 3 4 3 1 2 66 7777 4 4 66 0000 0 4444444 5 444444444 22 77 999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 44444 1 99 1 55 5 5 77 4 1 33 2 44 22 0 4 6 2 4 55 3 2 77 11 6 999999999999999999 6 22 1 22222222222222222 1 0 6 1 11111111 1 0 777777777777777777777777777777 8 44444444 1 1 444 0 5 8 44 111 333333333333333333333333333333333333 555 5 7777 8 8 00000 0 0 1 222222 44444444444444444444444444444444444444444444444 7 6 111 1 000 6 1 0 0 0 1 7 44 3 8888 1 1 2 1 77777
lowQualScore : .. ......... ... . .. ..... ... . .. . ........................... .. . ..... . ........ ........... ....... . . ... . .. . . . . . . .. .... . . .. .... . ....... . ......... .. .. ........................................................................ . . . . ..... . .. . .. . . .. . . .. . .. .. . . . . . .. . . .. .. . .................. . .. . ................. . . . . ........ . . .............................. . ........ . . ... . . . .. ... .................................... ... . .... . . ..... . . . ...... ............................................... . . ... . ... . . . . . . . .. . .... . . . . .....
lowQualScore : 00 777777777 000 0 99 99999 444 0 77 2 444444444444444444444444444 66 3 33333 9 22222222 55555555555 4444444 7 3 888 6 33 4 4 4 6 1 2 99 5555 2 4 99 2222 2 4444444 0 000000000 77 99 333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7 7 33333 0 22 7 77 7 7 99 0 7 11 5 66 88 2 2 5 8 6 33 5 5 77 77 7 222222222222222222 7 44 0 22222222222222222 0 3 3 7 66666666 6 4 000000000000000000000000000000 0 44444444 4 0 000 8 6 0 22 888 666666666666666666666666666666666666 000 0 0000 0 0 00000 8 8 0 888888 55555555555555555555555555555555555555555555555 5 3 777 0 222 7 4 8 2 7 0 3 00 7 3333 0 0 5 0 00000
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT--AA---------T-TT-T-CATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTT--N---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CAGAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC--GAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Reference ( family-948 ) : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT--AA---C---T-T-TT-T-CATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTT--G---G-AAA--TGCCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGCGACGTCAGCAGCACAAGATCGCTTCATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CANCGTCATCTACAGCATCTGNCATT-C---TGG---CTTCAGAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACA-------CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCGG--ACTCTG-----A--GANNAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTNCAGANGTCT--G-A-TGGAAGACTCGAGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
gi|1 : GAAT--CACCTGATTAC-----T---CCTT---GTTACATTTA-ATGCTATT----TGCT---CATTGGTTAGATATCCCATAGATTTTGAGGACAAT--GA---TATGTGT-TT-T-CACA---AA--AT-CCTAAAATCA-GTCTCTAT--------TACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ATGTGATTCAGGCACCAGTAGTCC-AT-CAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAAT--GTAACCACTTTA--G---GAAAA--TGCCATCTTTGAATGATGTTCAACACAAC--AAT-----GC----------AATTGAA---------GT------------------CA--G------T-------T-GCA-A-G-AGA-----TTTAAATGTTG--CACAAAGCACCGTATCTAT-TCT--TTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGACCAT-CATGATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGC-CAAAGTATCTCATCTTCATTAACATTCACAA-CAGTGTCATCTACAGCATCTGCCATTCC---TGGGCCCTCCAGAATATCACAACAGATTGTTCACAATCGATTAA-G-GG-AAGCTAGGATTAAA---TGCA------GAC-TA-G--TTGATG--------GCATTGTTCTG-ATA-------CTGCAACATCACCAGAACC---GACTTCAATGAT-CTTAG--ACTCCG-----A--GATTAT--GGA-C-ATGG--------CAACCTTG---GGGAACAATTT----GGTT-CAA-TG-----ACAAATCTCAATTTTTACTGCAGACGCCT--T-A-TGGAAGACTCAAGAGTGT------AT----AGGA--GTTAAAA----GAA-GC-ATTTTGTACAAAA-TGCATCCA---GGATGTGGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCA
gi|10 : gagtA-ACGTTACT-----GTT---TATTGGATAGGTATTCCATAGAATTTGAGGACATT--AA---A---A-C-CT-C-C-TA---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-TAGC---ATGTGATTCAGGCACCAATAGTTT-AT-CGA-AAGTGCAGGTT--CTTGGTATCGGGTTacaaaacaatatcagacc
gi|11 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagAAT--CATCTGACTACATCAGTACACCTT---GTTACAATTACATCTTATTCTGTTGTT---TACTGAATAGATATTCtttcatct
gi|11 : TATT----CATTAGATACTGGATAGATATTCATTAGAATTTGAGGATGATAAAA---C---T-TGTT-TACATA---TA--AT-CCTAAAATCA-ATCT-TGTATTATTTAAACTC--T---TGATGTTGCAAGTTCCattagatactggatagatattcattagaatttgaggatgataaaacttgtttacatataatcctaaaatcaatcttgtattatttaaactcttgatgttgcaagttcctaaataaatcagacgt
gi|12 : aatcatctgactacatcagtacaccttgttacaattacatcttattctgttgtttactgaataga-ACGCT-CT----TGTT---TGCTGGTTGGATATTTCATAGAATTTTAGGACAAT--A--------------------------------C--AAATCG-GTCTCTGT--------AACTC--TTAAT--TCTTTTAAGTTCCT----A-A-A-AC---ACGTTATTCGGGCACCAGCAGTGC-ATTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAAT--TTAACCGCTTTT--T---G-AGA--taaataaatcagacgt
gi|13 : -T-TC-T-CATA---AA--AT-CCTAAAACGG-ATGTTTAT--------AACTC--TCAAT--TGTTGTAAGTT-CC----T-ATT-GC---ACGTGATGCAGGGACCa
gi|13 : aacgtgC-CTC--AAAT--GTAACTGCTTTTTAA---G-AAA--TATCGCGTCTGCATGATGAACAACATAATTGAA-------C----------GACTGGA---------tcaaatgtaactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|14 : aacgtgttctcataaaatcctaaaacggatgtttataactctcaattgttgtaagttcctattgcacgtgatgcagggaT--CGCCGGATTAC-----T---CTTT---GTTACATCTA-TCGCT---------TT---TATT-------TACT-------------GGACAAT--AA-----------------------AA--CT-CCTAAAA---------------------ATTC--TCAAT--TGCTGTAAGTTCCA----A-A-T-GC---ACGTTATCCAGACAaacaggtgtcacaatatgcagttg
gi|15 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctGAATGCCACCTGCTTAT-----T---CCAT---GTCACATCTA-ACGCTAATA---TGT-----ACCGAATAGATATTGTCTAGAATCTGAGGACAATAAAA---C---G-T-TTAT-TATA---CA--GT-CCTACAATT--GTCTCTGT--------GGCTT--TCAGT--TGTTGTAAGTTCCTAAAAT-A-T-GCCAGAAGTGAT
gi|16 : aCGTGTTGTCAGGAGCTCAGAATCACTGTA-CCTATTAC-T--TCTTTGT-CAACG------------------ATTCACAA-CATAGTCATTTCCAGCATTTGATATT-C----G-------------------------TGTTTGCACTCAACC-A-T-GGAATGCTGGGATTACAGCG
gi|17 : acaagtatacaaatct------------------CA--A------T-------T-GAA-A-G-AGA-----ATTAAATATTG--CACAAAGCACTAAATTT-T-GCCTTTTTG----AAATATCAA
gi|18 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttgAAT--CGCTTGATTAC-----A---CTTT---GATACATCT
gi|19 : acgatagtaatttttcgctgaatcttttcaaacaatctccatatacattttaggggatataaaataCAGAGGTCT--A-AACGGAAGA-------GTGT------AT----AGGA--GCCAAAAT---TAA--T-GCTATGTGCAATATTGAATCCA---GGAGGCTGACC-T-G-T
gi|2 : ggggTCTA-ATGCTATT-----GTT---TACTGTACACGTCTTCTACATAATTTGAGGACAAT--GA------------------------A--A---CTAAAATCG-ATCTCTTT--------AATTG--TTGAT--AGTTGTAAGTTCCT----A-A-T-GT---ACGTGATTCAGGAACCAGTAGTCG-AT-CAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAAT--GTAACCATTTTT--GTGAG-AAA--TACCGCATCTGAACAATGCTCAAAGAAAG--AAC-----GCAATTTGAC--GACTGGAAGCAGGTGTGTAACAATTTG---------CA--G------T-------T-GCA-A-G-GGA-----TTTCAGTGTTG--CATAAATCACGATATAT-C-GCC--TATGAAACA--TA-----AA--------AACAAATGATAGTCACTAAGTAGGTAGATGGCACGTGGTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGTCGTATTT-T-CAACT------------------ATTCTCAA-CATCGTCACCTACTTCAGCTGTCATT-CCTGTGATT-CTTT-GAATATCAGTCCAGTCTGTTTGCAGCCAACT-A-C--------TGGGATTAGAGCGCGCA------GAC-CG-G--TCG-TA--------ACATTGTTCCA-ACTTCTT---CTTCAATGGTCTCGGACTCATAGAGT---ATGGT-CACAGCAACGCCG-----AAGGACAGTTTGGTTC-AGGGATGATTCTCAACTTTGACTGCGGATACTTCAGAAGGTA-CAGACGCCAAAATGGATT--GATTTCTACTTCAGAGGTAT--G-A-TGGACGACGC-AGAATGTTCAACTATTCTCAACATCGTCAACATCGTGAA--C-GTTTTGCGCAAAATTGCATCCAATTGGAGGCTGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAg
gi|20 : aaaaaagagtaaagcataacatggatttttcactgattctatAATCACCATATCT-T-GTC--TTTAGAGCAGATATTAACACCATAGTTCAA
gi|3 : tctttcaaatttaaggacaatAC-----T---CTTTTCTGTGACATCTA-TGGCTATT-----GAA---TAGTAGATGCATGTATTACAGAATTTGTGGA--GT--G----------T-TT-T-CGTA---AA--ATTCCTGCAATTGTGTCTTCGT--------AACTCACC--AT--TTTTGTTAATTCC-----T-A-T-A-----------TCACGCTCCAGTAGTTCTAC-TTA-AT-TGCTTGTT--TTCTGTATT-GATTGCGTTGTC-CTT--ATATTGACAACCTTTTTT--A---G-AAA--TACTGCATTTGAATAATACTTAAAGCAGC--AAC-----ACAAAGATGGTCGGTTGGACAGGT----GTTTTA--------------CA--ACTTTTAT-------T-GCA-AAG-AAA-----TTCA---GTTGGGCACAAAGC-CATTATCT-TCGAT--TTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAACTCGCGCAAAGTCAACAGCAGAACATTGCT-AATCC-ATTGCG--GTCATCAAACAACG------------------AT-CACAAACAGTGTCGTTTACAGATTATGACATT-T---T-----------------AAATCAAACAGCTCACAATCCACT-C-C-------------CTAGAGCGCACA------TAT-C-------------------------TTCCGCACA-------CTGCAATATTGCTGGATTC---GTCATCAATGATTCTGAG--ACTC-------A--TAAAAT--GA--C-GCAG--------AAATGCTA---ACAAGCAGTTT----TGTTTCAA-CG-----ATGAATTTCGATTTTTACT-CATAAACCT--GAA-TTGAAATCTC----GTGT------AT----TGGAT-GCCAAAAT---GAA----GTTTTGAACAAAATTACATCCA---CAAGACATACC-G-GTTTTAGAGGGGg
gi|4 : ACTGGCTAAATATTCTTTAGAATTTGAGGAC-AT----------------------TA---AA--AT-CCTAAAATCG-GTCATTGT--------AACTC-------------GTAATTTCTC----TAA-T-GC---AAGTGATTCAGGTACAAGTAGTCT-AT-CAA-Aagatgttacagtg
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaGTAGTC-TATCAAAAT--GTAACCGCTTTT--T---G-AAAAATGCCGTGTCTGAATGATGG-CAACAGGAC--AACTGAAAGC----------AGGTGT----------GT------------------CACTA------T-------TTGCAGA-G-AGAATATATTTCAATATTG--CACAAAACACCGTATCT-T-GCC--TTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaaATCGCTTTATCCGACTGCGTCGTCTTCGT-CAATG------------------ATTCACAA-CGGCGTTATCTACAACATCTGGGAT--------G---C-ACAGAATATCAGATGAGACTGTTTGCAATGGACT-ACC-GG-ATGCAGGAATTAAAGCACGCG------GAC-CT-ATTTC--TG--------GCATTGTTCTG-ACT-------CTCCAACATTAACGGAACC---GACTTC-TTGGT-CTTAG----TCT---------------------C-ACAG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|5 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcCAGAGGTCTAAG-A-CGGAAGA-----GGGT---------T----AGGAA-GCCAAAAT---TAATGCTATGGTGTGCAATATTGAATCCA---GGAGGCTGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|6 : ggTCTGT--------GACTC--T---------CGAATATTTCC----T-AAT-GC---ATTTGATTCAGGCACC-GTAGTCA-AT-CAA-A----------------ATAT----CTGCGTTGTC-TTT-----T--G-------------A---G-AAA---------------TGATGTTTAACGCAAC--AAC-----GC----------AATTGGAC--------GTCTGGAAGCAGGTGCGTCACA--A------TTTGCAGCT-GCA-A-A-AGA-----TTTTAATGTTG--CAAAACGCTCTTTAACT-T-GCC--TTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAACCACGCGTGACGTCAGCAACACAAGATCGCTTCATCCGATTGCGTAATCTTTGT-CGACG------------------ATTCACAA-Cgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
gi|6 : aaaaATCAGACTGTTTGCAATCGACT-A-CGGG-ATGTTGGGATTGGAGCGtgattcatcagactgtttgcaatcgactacgggatgttgggattggagcg
gi|7 : aaaatctgtgactctcgaatatttcctaatgcatttgattcaggcaccgtagtcaatcaaaatatctgcgttgtcttttgagaaatgatgtttaacgcaacaacgcaattggacgtctggaagcaggtgcgtcacaatttgcagctgcaaaagattttaatgttgcaaaacgctctttaacttgcctttggaacagactgcaacaaaatggcacaacaaatgattgtcacagagcagataaaccacgcgtgacgtcagcaacacaagatcgcttcatccgattgcgtaatctttgtcgacgattcacaactgattcCAGAATATCAGATTAGACTATT----------------GG-ATGCTAGGATTAAAGTACATGTACAAAGACACATG--TAG-TGATGTACTTGCATTGTTCTG-TCATCTGACTCTGCAACATTGCTGGAACC---AACTTCAGAGGT-ATCGG--ACTCTGGACATA--GAAAAT--GA--CCAAGG--------CTATGCTGTT-G-GGACAGTTT----TGCT-CAG-TG-----ATGAATCTCGATTTTTATCTTAGGCGTCT--G-G-TGGAAGAATCG-GAG----------T----AGGAT--------------A-G--GTT----GCAAAATCACATCTA---GGAGTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAG
gi|8 : cacttgaccttgcagcacaaatttgGCCAGATTAC-----A---CTTT---GATACATCTA-AAG----------ATT---TAGAGGACAGTCATACAATAGAATTT---------------------------T-CATACCCAATCAT-CTCAAATTCG-ATCCCTTT--------CACTT--G--AT--TGTTGTAAATTCCG----A-A-T-GC---ACGTTATTCAGGCACCAGTAATCC-AT-CAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAAT--------GCTTT--------------------GCCTGAATGATAGTCAACGCAAC--AAC-----GC----------GATTGGA-----------------------------CG--A------C-------T-GGA-A-GCAGA-----T
gi|9 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaaA-ACGTTACT-----GTT---TATTG-ATAGGTATTCCATAGAATTTGAGGACATT--AAAACC---T-C-CT-T--------AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-T-GC---ATCTGATTCAGGCACCAATAGTTT-AT-CGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTgtgtaaagg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222222222 111 22222 555555555555555555555555555 11111111 33333333333 1111111 1111 22222 111111111 333333333333333333333333333333333333333333333333333333333333333333333333 11111 444444444444444444 8888888888888888888 22222222 666666666666666666666666666666 44444444 111 11 666666666666666666666666666666666666 222 1111 22222 1111111 66666666666666666666666666666666666666666666666 111 111 33 2222 22222
lowQualScore : 11 222222222 000 4 2 33333 666 1 0 00 3 666666666666666666666666666 44 3 88888 11111111 99999999999 2222222 6 3 555 1 55 4 3 4 3 1 2 66 7777 4 4 66 0000 0 11111 5 222222222 22 77 999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 44444 1 99 1 55 5 5 77 4 1 33 2 44 22 0 4 6 4 3 2 77 11 6 999999999999999999 6 3 1 0000000000000000000 1 0 6 1 11111111 1 0 777777777777777777777777777777 8 22222222 0 1 1 444 0 5 8 1 11 777777777777777777777777777777777777 555 5 7777 8 8 00000 0 7 1 3333333 22222222222222222222222222222222222222222222222 7 6 111 1 000 6 1 0 0 0 1 7 44 3 8888 1 1 2 1 77777
lowQualScore : .. ......... ... . . ..... ... . . .. . ........................... .. . ..... ........ ........... ....... . . ... . .. . . . . . . .. .... . . .. .... . ..... . ......... .. .. ........................................................................ . . . . ..... . .. . .. . . .. . . .. . .. .. . . . . . . .. .. . .................. . . . ................... . . . . ........ . . .............................. . ........ . . . ... . . . . .. .................................... ... . .... . . ..... . . . ....... ............................................... . . ... . ... . . . . . . . .. . .... . . . . .....
lowQualScore : 00 777777777 000 0 1 77777 444 0 8 55 7 111111111111111111111111111 66 3 66666 22222222 99999999999 4444444 7 3 888 6 33 4 4 4 6 1 2 99 5555 2 4 99 2222 2 88888 0 222222222 77 99 333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7 7 33333 0 22 7 77 7 7 99 0 7 11 5 66 88 2 2 5 2 5 5 77 77 7 222222222222222222 7 7 0 3333333333333333333 0 3 3 7 66666666 6 4 000000000000000000000000000000 0 22222222 8 4 0 000 8 6 0 4 00 222222222222222222222222222222222222 000 0 0000 0 0 00000 8 0 0 5555555 33333333333333333333333333333333333333333333333 5 3 777 0 222 7 4 8 2 7 0 3 00 7 3333 0 0 5 0 00000
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTCG-GAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Reference ( family-948 ) : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC--GAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
gi|1 : GAAT--CACCTGATTAC-----T---CCTT---GTTACATTTA-ATGCTATT----TGCT---CATTGGTTAGATATCCCATAGATTTTGAGGACAAT-GA------TATGTGTTT-TCACA---AA--AT-CCTAAAATCA-GTCTCTAT--------TACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ATGTGATTCAGGCACCAGTAGTCC-AT-CAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAAT--GTAACCACTTTAG---GAAAA--TGCCATCTTTGAATGATGTTCAACACAAC--AAT-----GC----------AATTGAA---------GT------------------CA--G------T-------T-GCA-A-G-AGA-----TTTAAATGTTG--CACAAAGCACCGTATCTAT-TCT--TTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGACCAT-CATGATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGC-CAAAGTATCTCATCTTCATTAACATTCACAA-CAGTGTCATCTACAGCATCTGCCATTCC---TGGGCCCTCCA--GAATATCACAACAGATTGTTCACAATCGATTAA-G-GG-AAGCTAGGATTAAA---TGCA------GAC-TA-G--TTGATG--------GCATTGTTCTG-ATA-------CTGCAACATCACCAGAACC---GACTTCAATGAT-CTTAG--ACTCCG-----A--GATTAT--GGA-C-ATGG--------CAACCTTG---GGGAACAATTT----GGTT-CAA-TG-----ACAAATCTCAATTTTTACTGCAGACGCCT--T-A-TGGAAGACTCAAGAGTGT------AT----AGGA--GTTAAAA----GAA-GC-ATTTTGTACAAAA-TGCATCCA---GGATGTGGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCA
gi|10 : gagtA-ACGTTACT-----GTT---TATTGGATAGGTATTCCATAGAATTTGAGGACATT-AA------AA-----CC-TCCTA---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-TAGC---ATGTGATTCAGGCACCAATAGTTT-AT-CGA-AAGTGCAGGTT--CTTGGTATCGGGTTacaaaacaatatcagacc
gi|11 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagAAT--CATCTGACTACATCAGTACACCTT---GTTACAATTACATCTTATTCTGTTGTT---TACTGAATAGATATTCtttcatct
gi|11 : TATT----CATTAGATACTGGATAGATATTCATTAGAATTTGAGGATGAT-AAAACTTGT------TT-ACATA---TA--AT-CCTAAAATCA-ATCT-TGTATTATTTAAACTC--T---TGATGTTGCAAGTTCCattagatactggatagatattcattagaatttgaggatgataaaacttgtttacatataatcctaaaatcaatcttgtattatttaaactcttgatgttgcaagttcctaaataaatcagacgt
gi|12 : aatcatctgactacatcagtacaccttgttacaattacatcttattctgttgtttactgaataga-ACGCT-CT----TGTT---TGCTGGTTGGATATTTCATAGAATTTTAGGACAAT-A---------------------------------C--AAATCG-GTCTCTGT--------AACTC--TTAAT--TCTTTTAAGTTCCT----A-A-A-AC---ACGTTATTCGGGCACCAGCAGTGC-ATTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAAT--TTAACCGCTTTTT---G-AGA--taaataaatcagacgt
gi|13 : ------T------TC-TCATA---AA--AT-CCTAAAACGG-ATGTTTAT--------AACTC--TCAAT--TGTTGTAAGTT-CC----T-ATT-GC---ACGTGATGCAGGGACCa
gi|13 : aacgtgC-CTC--AAAT--GTAACTGCTTTTTAA-G-AAA--TATCGCGTCTGCATGATGAACAACATAATTGAA-------C----------GACTGGA---------tcaaatgtaactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|14 : aacgtgttctcataaaatcctaaaacggatgtttataactctcaattgttgtaagttcctattgcacgtgatgcagggaT--CGCCGGATTAC-----T---CTTT---GTTACATCTA-TCGCT-TT----TATT---TACT------------------------GGACAAT-AA------------------------AA--CT-CCTAAAA--A-TTCTC-----------AA---------T--TGCTGTAAGTTCCA----A-A-T-GC---ACGTTATCCAGACAaacaggtgtcacaatatgcagttg
gi|15 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctGAATGCCACCTGCTTAT-----T---CCAT---GTCACATCTA-ACGCTAATA---TGT-----ACCGAATAGATATTGTCTAGAATCTGAGGACAAT-AAAACG--T------TTATTATA---CA--GT-CCTACAATT--GTCTCTGT--------GGCTT--TCAGT--TGTTGTAAGTTCCTAAAAT-A-T-GCCAGAAGTGAT
gi|16 : aCGTGTTGTCAGGAGCTCAGAATCACTGTA-CCTATTAC-T--TCTTTGT-CAACG------------------ATTCACAA-CATAGTCATTTCCAGCATTTGATATT-C----G---------------------------TGTTTGCACTCAACC-A-T-GGAATGCTGGGATTACAGCG
gi|17 : acaagtatacaaatct------------------CA--A------T-------T-GAA-A-G-AGA-----ATTAAATATTG--CACAAAGCACTAAATTT-T-GCCTTTTTG----AAATATCAA
gi|18 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttgAAT--CGCTTGATTAC-----A---CTTT---GATACATCT
gi|19 : acgatagtaatttttcgctgaatcttttcaaacaatctccatatacattttaggggatataaaataCAGAGGTCT--A-AACGGAAGA-------GTGT------AT----AGGA--GCCAAAAT---TAA--T-GCTATGTGCAATATTGAATCCA---GGAGGCTGACC-T-G-T
gi|2 : ggggTCTA-ATGCTATT-----GTT---TACTGTACACGTCTTCTACATAATTTGAGGACAAT-GA-------------------------A--A---CTAAAATCG-ATCTCTTT--------AATTG--TTGAT--AGTTGTAAGTTCCT----A-A-T-GT---ACGTGATTCAGGAACCAGTAGTCG-AT-CAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAAT--GTAACCATTTTTGTGAG-AAA--TACCGCATCTGAACAATGCTCAAAGAAAG--AAC-----GCAATTTGAC--GACTGGAAGCAGGTGTGTAACAATTTG---------CA--G------T-------T-GCA-A-G-GGA-----TTTCAGTGTTG--CATAAATCACGATATAT-C-GCC--TATGAAACA--TA-----AA--------AACAAATGATAGTCACTAAGTAGGTAGATGGCACGTGGTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGTCGTATTT-T-CAACT------------------ATTCTCAA-CATCGTCACCTACTTCAGCTGTCATT-CCTGTGA---TT-CTTTGAATATCAGTCCAGTCTGTTTGCAGCCAACT-A-C--------TGGGATTAGAGCGCGCA------GAC-CG-G--TCG-TA--------ACATTGTTCCA-ACTTCTT---CTTCAATGGTCTCGGACTCATAGAGT---ATGGT-CACAGCAACGCCG-----AAGGACAGTTTGGTTC-AGGGATGATTCTCAACTTTGACTGCGGATACTTCAGAAGGTA-CAGACGCCAAAATGGATT--GATTTCTACTTCAGAGGTAT--G-A-TGGACGACGCA-GAATGTTCAACTATTCTCAACATCGTCAACATCGTGAA--C-GTTTTGCGCAAAATTGCATCCAATTGGAGGCTGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAg
gi|20 : aaaaaagagtaaagcataacatggatttttcactgattctatAATCACCATATCT-T-GTC--TTTAGAGCAGATATTAACACCATAGTTCAA
gi|3 : tctttcaaatttaaggacaatAC-----T---CTTTTCTGTGACATCTA-TGGCTATT-----GAA---TAGTAGATGCATGTATTACAGAATTTGTGGA--GT-G-------T------TT-TCGTA---AA--ATTCCTGCAATTGTGTCTTCGT--------AACTCACC--AT--TTTTGTTAATTCC-----T-A-T-A-----------TCACGCTCCAGTAGTTCTAC-TTA-AT-TGCTTGTT--TTCTGTATT-GATTGCGTTGTC-CTT--ATATTGACAACCTTTTTTA---G-AAA--TACTGCATTTGAATAATACTTAAAGCAGC--AAC-----ACAAAGATGGTCGGTTGGACAGGT----GTTTTA--------------CA--ACTTTTAT-------T-GCA-AAG-AAA-----TTCA---GTTGGGCACAAAGC-CATTATCT-TCGAT--TTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAACTCGCGCAAAGTCAACAGCAGAACATTGCTA-ATCC-ATTGCG--GTCATCAAACAACG------------------AT-CACAAACAGTGTCGTTTACAGATTATGACATT-T---T-------------------AAATCAAACAGCTCACAATCCACT-C-C-------------CTAGAGCGCACA------TAT-C-------------------------TTCCGCACA-------CTGCAATATTGCTGGATTC---GTCATCAATGATTCTGAG--ACTC-------A--TAAAAT--GA--C-GCAG--------AAATGCTA---ACAAGCAGTTT----TGTTTCAA-CG-----ATGAATTTCGATTTTTAC-TCATAAACCT--GAA-TTGAAATCTC----GTGT------AT----TGGAT-GCCAAAAT---GAA----GTTTTGAACAAAATTACATCCA---CAAGACATACC-G-GTTTTAGAGGGGg
gi|4 : ACTGGCTAAATATTCTTTAGAATTTGAGGACA---------------------T--TA---AA--AT-CCTAAAATCG-GTCATTGT--------AACTC-------------GTAATTTCTC----TAA-T-GC---AAGTGATTCAGGTACAAGTAGTCT-AT-CAA-Aagatgttacagtg
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaGTAGTC-TATCAAAAT--GTAACCGCTTTTT---G-AAAAATGCCGTGTCTGAATGATGG-CAACAGGAC--AACTGAAAGC----------AGGTGT----------GT------------------CACTA------T-------TTGCAGA-G-AGAATATATTTCAATATTG--CACAAAACACCGTATCT-T-GCC--TTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaaATCGCTTTATCCGACTGCGTCGTCTTCGT-CAATG------------------ATTCACAA-CGGCGTTATCTACAACATCTGGGAT--------G---CA-CA--GAATATCAGATGAGACTGTTTGCAATGGACT-ACC-GG-ATGCAGGAATTAAAGCACGCG------GAC-CT-ATTTC--TG--------GCATTGTTCTG-AC-TCT----C--CAACATTAACGGAACC---GACTTC-TTGGT-CTTAG--TCT-----------------------C-ACAG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|5 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcCAGAGGTCTAAG-A-CGGAAGA-----GGGT---------T----AGGAA-GCCAAAAT---TAATGCTATGGTGTGCAATATTGAATCCA---GGAGGCTGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|6 : ggTCTGT--------GACTC--T---------CGAATATTTCC----T-AAT-GC---ATTTGATTCAGGCACC-GTAGTCA-AT-CAA-A----------------ATAT----CTGCGTTGTC-TTT-----T--G-----------A---G-AAA---------------TGATGTTTAACGCAAC--AAC-----GC----------AATTGGAC--------GTCTGGAAGCAGGTGCGTCACA--A------TTTGCAGCT-GCA-A-A-AGA-----TTTTAATGTTG--CAAAACGCTCTTTAACT-T-GCC--TTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAACCACGCGTGACGTCAGCAACACAAGATCGCTTCATCCGATTGCGTAATCTTTGT-CGACG------------------ATTCACAA-CTGATTCATCgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
gi|6 : aaaaATCAGACTGTTTGCAATCGACT-A-CGGG-ATGTTGGGATTGGAGCGagactgtttgcaatcgactacgggatgttgggattggagcg
gi|7 : aaaatctgtgactctcgaatatttcctaatgcatttgattcaggcaccgtagtcaatcaaaatatctgcgttgtcttttgagaaatgatgtttaacgcaacaacgcaattggacgtctggaagcaggtgcgtcacaatttgcagctgcaaaagattttaatgttgcaaaacgctctttaacttgcctttggaacagactgcaacaaaatggcacaacaaatgattgtcacagagcagataaaccacgcgtgacgtcagcaacacaagatcgcttcatccgattgcgtaatctttgtcgacgattcacaactgattc-CA--GAATATCAGATTAGACTATT----------------GG-ATGCTAGGATTAAAGTACATGTACAAAGACACATG--TAG-TGATGTACTTGCATTGTTCTG-TCATCTGACTCTGCAACATTGCTGGAACC---AACTTCAGAGGT-ATCGG--ACTCTGGACATA--GAAAAT--GA--CCAAGG--------CTATGCTGTT-G-GGACAGTTT----TGCT-CAG-TG-----ATGAATCTCGATTTTTATCTTAGGCGTCT--G-G-TGGAAGAATCG-GAG----------T----AGGAT--------------A-G--GTT----GCAAAATCACATCTA---GGAGTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAG
gi|8 : cacttgaccttgcagcacaaatttgGCCAGATTAC-----A---CTTT---GATACATCTA-AAG----------ATT---TAGAGGACAG-----TCATACAAT---AG-------AA------T------TT-TCATACCCAATCAT-CTCAAATTCG-ATCCCTTT--------CACTT--G--AT--TGTTGTAAATTCCG----A-A-T-GC---ACGTTATTCAGGCACCAGTAATCC-AT-CAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAAT--------GCTTT------------------GCCTGAATGATAGTCAACGCAAC--AAC-----GC----------GATTGGA-----------------------------CG--A------C-------T-GGA-A-GCAGA-----T
gi|9 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaaA-ACGTTACT-----GTT---TATTG-ATAGGTATTCCATAGAATTTGAGGACATTAAA------A------CC-TCCTT---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-T-GC---ATCTGATTCAGGCACCAATAGTTT-AT-CGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTgtgtaaagg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222222222 111 22222 555555555555555555555555555 11111111 33333333333 1111111 1111 22222 111111111 333333333333333333333333333333333333333333333333333333333333333333333333 11111 444444444444444444 8888888888888888888 22222222 666666666666666666666666666666 44444444 111 11 666666666666666666666666666666666666 222 1111 22222 1111111 55555555555555555555555555555555555555555555555 111 111 33 2222 22222
lowQualScore : 11 222222222 000 4 2 33333 666 1 0 00 3 666666666666666666666666666 44 3 88888 11111111 99999999999 2222222 6 3 555 1 55 4 3 4 3 1 2 66 7777 4 4 66 0000 0 11111 5 222222222 22 77 999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 44444 1 99 1 55 5 5 77 4 1 33 2 44 22 0 4 6 4 3 2 77 11 6 999999999999999999 6 3 1 0000000000000000000 1 0 6 1 11111111 1 0 777777777777777777777777777777 8 22222222 0 1 1 444 0 5 8 1 11 777777777777777777777777777777777777 555 5 7777 8 8 00000 0 7 1 3333333 44444444444444444444444444444444444444444444444 7 6 111 1 000 6 1 0 0 0 1 7 44 3 8888 1 1 2 1 77777
lowQualScore : .. ......... ... . . ..... ... . . .. . ........................... .. . ..... ........ ........... ....... . . ... . .. . . . . . . .. .... . . .. .... . ..... . ......... .. .. ........................................................................ . . . . ..... . .. . .. . . .. . . .. . .. .. . . . . . . .. .. . .................. . . . ................... . . . . ........ . . .............................. . ........ . . . ... . . . . .. .................................... ... . .... . . ..... . . . ....... ............................................... . . ... . ... . . . . . . . .. . .... . . . . .....
lowQualScore : 00 777777777 000 0 1 77777 444 0 8 55 7 111111111111111111111111111 66 3 66666 22222222 99999999999 4444444 7 3 888 6 33 4 4 4 6 1 2 99 5555 2 4 99 2222 2 88888 0 222222222 77 99 333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7 7 33333 0 22 7 77 7 7 99 0 7 11 5 66 88 2 2 5 2 5 5 77 77 7 222222222222222222 7 7 0 3333333333333333333 0 3 3 7 66666666 6 4 000000000000000000000000000000 0 22222222 8 4 0 000 8 6 0 4 00 222222222222222222222222222222222222 000 0 0000 0 0 00000 8 0 0 5555555 33333333333333333333333333333333333333333333333 5 3 777 0 222 7 4 8 2 7 0 3 00 7 3333 0 0 5 0 00000
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC-GGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Reference ( family-948 ) : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC-GGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
gi|1 : GAAT--CACCTGATTAC-----T---CCTT---GTTACATTTA-ATGCTATT----TGCT---CATTGGTTAGATATCCCATAGATTTTGAGGACAAT-GA------TATGTGTTT-TCACA---AA--AT-CCTAAAATCA-GTCTCTAT--------TACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ATGTGATTCAGGCACCAGTAGTCC-AT-CAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAAT--GTAACCACTTTAG---GAAAA--TGCCATCTTTGAATGATGTTCAACACAAC--AAT-----GC----------AATTGAA---------GT------------------CA--G------T-------T-GCA-A-G-AGA-----TTTAAATGTTG--CACAAAGCACCGTATCTAT-TCT--TTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGACCAT-CATGATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGC-CAAAGTATCTCATCTTCATTAACATTCACAA-CAGTGTCATCTACAGCATCTGCCATTCC---TGGGCCCTCCA--GAATATCACAACAGATTGTTCACAATCGATTAA-G-GG-AAGCTAGGATTAAA---TGCA------GAC-TA-G--TTGATG--------GCATTGTTCTG-ATA-------CTGCAACATCACCAGAACC---GACTTCAATGAT-CTTAG--ACTCCG-----A--GATTAT--GGA-C-ATGG--------CAACCTTG---GGGAACAATTT----GGTT-CAA-TG-----ACAAATCTCAATTTTTACTGCAGACGCCT--T-A-TGGAAGACTCAAGAGTGT------AT----AGGA--GTTAAAA----GAA-GC-ATTTTGTACAAAA-TGCATCCA---GGATGTGGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCA
gi|10 : gagtA-ACGTTACT-----GTT---TATTGGATAGGTATTCCATAGAATTTGAGGACATT-AA------AA-----CC-TCCTA---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-TAGC---ATGTGATTCAGGCACCAATAGTTT-AT-CGA-AAGTGCAGGTT--CTTGGTATCGGGTTacaaaacaatatcagacc
gi|11 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagAAT--CATCTGACTACATCAGTACACCTT---GTTACAATTACATCTTATTCTGTTGTT---TACTGAATAGATATTCtttcatct
gi|11 : TATT----CATTAGATACTGGATAGATATTCATTAGAATTTGAGGATGAT-AAAACTTGT------TT-ACATA---TA--AT-CCTAAAATCA-ATCT-TGTATTATTTAAACTC--T---TGATGTTGCAAGTTCCattagatactggatagatattcattagaatttgaggatgataaaacttgtttacatataatcctaaaatcaatcttgtattatttaaactcttgatgttgcaagttcctaaataaatcagacgt
gi|12 : aatcatctgactacatcagtacaccttgttacaattacatcttattctgttgtttactgaataga-ACGCT-CT----TGTT---TGCTGGTTGGATATTTCATAGAATTTTAGGACAAT-A---------------------------------C--AAATCG-GTCTCTGT--------AACTC--TTAAT--TCTTTTAAGTTCCT----A-A-A-AC---ACGTTATTCGGGCACCAGCAGTGC-ATTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAAT--TTAACCGCTTTTT---G-AGA--taaataaatcagacgt
gi|13 : ------T------TC-TCATA---AA--AT-CCTAAAACGG-ATGTTTAT--------AACTC--TCAAT--TGTTGTAAGTT-CC----T-ATT-GC---ACGTGATGCAGGGACCa
gi|13 : aacgtgC-CTC--AAAT--GTAACTGCTTTTTAA-G-AAA--TATCGCGTCTGCATGATGAACAACATAATTGAA-------C----------GACTGGA---------tcaaatgtaactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|14 : aacgtgttctcataaaatcctaaaacggatgtttataactctcaattgttgtaagttcctattgcacgtgatgcagggaT--CGCCGGATTAC-----T---CTTT---GTTACATCTA-TCGCT-TT----TATT---TACT------------------------GGACAAT-AA------------------------AA--CT-CCTAAAA--A-TTCTC-----------AA---------T--TGCTGTAAGTTCCA----A-A-T-GC---ACGTTATCCAGACAaacaggtgtcacaatatgcagttg
gi|15 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctGAATGCCACCTGCTTAT-----T---CCAT---GTCACATCTA-ACGCTAATA---TGT-----ACCGAATAGATATTGTCTAGAATCTGAGGACAAT-AAAACG--T------TTATTATA---CA--GT-CCTACAATT--GTCTCTGT--------GGCTT--TCAGT--TGTTGTAAGTTCCTAAAAT-A-T-GCCAGAAGTGAT
gi|16 : aCGTGTTGTCAGGAGCTCAGAATCACTGTA-CCTATTAC-T--TCTTTGT-CAACG------------------ATTCACAA-CATAGTCATTTCCAGCATTTGATATT-C----G---------------------------TGTTTGCACTCAACC-A-T-GGAATGCTGGGATTACAGCG
gi|17 : acaagtatacaaatct------------------CA--A------T-------T-GAA-A-G-AGA-----ATTAAATATTG--CACAAAGCACTAAATTT-T-GCCTTTTTG----AAATATCAA
gi|18 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttgAAT--CGCTTGATTAC-----A---CTTT---GATACATCT
gi|19 : acgatagtaatttttcgctgaatcttttcaaacaatctccatatacattttaggggatataaaataCAGAGGTCT--A-AACGGAAGA-------GTGT------AT----AGGA--GCCAAAAT---TAA--T-GCTATGTGCAATATTGAATCCA---GGAGGCTGACC-T-G-T
gi|2 : ggggTCTA-ATGCTATT-----GTT---TACTGTACACGTCTTCTACATAATTTGAGGACAAT-GA-------------------------A--A---CTAAAATCG-ATCTCTTT--------AATTG--TTGAT--AGTTGTAAGTTCCT----A-A-T-GT---ACGTGATTCAGGAACCAGTAGTCG-AT-CAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAAT--GTAACCATTTTTGTGAG-AAA--TACCGCATCTGAACAATGCTCAAAGAAAG--AAC-----GCAATTTGAC--GACTGGAAGCAGGTGTGTAACAATTTG---------CA--G------T-------T-GCA-A-G-GGA-----TTTCAGTGTTG--CATAAATCACGATATAT-C-GCC--TATGAAACA--TA-----AA--------AACAAATGATAGTCACTAAGTAGGTAGATGGCACGTGGTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGTCGTATTT-T-CAACT------------------ATTCTCAA-CATCGTCACCTACTTCAGCTGTCATT-CCTGTGA---TT-CTTTGAATATCAGTCCAGTCTGTTTGCAGCCAACT-A-C--------TGGGATTAGAGCGCGCA------GAC-CG-G--TCG-TA--------ACATTGTTCCA-ACTTCTT---CTTCAATGGTCTCGGACTCATAGAGT---ATGGT-CACAGCAACGCCG-----AAGGACAGTTTGGTTC-AGGGATGATTCTCAACTTTGACTGCGGATACTTCAGAAGGTA-CAGACGCCAAAATGGATT--GATTTCTACTTCAGAGGTAT--G-A-TGGACGACGC-AGAATGTTCAACTATTCTCAACATCGTCAACATCGTGAA--C-GTTTTGCGCAAAATTGCATCCAATTGGAGGCTGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAg
gi|20 : aaaaaagagtaaagcataacatggatttttcactgattctatAATCACCATATCT-T-GTC--TTTAGAGCAGATATTAACACCATAGTTCAA
gi|3 : tctttcaaatttaaggacaatAC-----T---CTTTTCTGTGACATCTA-TGGCTATT-----GAA---TAGTAGATGCATGTATTACAGAATTTGTGGA--GT-G-------T------TT-TCGTA---AA--ATTCCTGCAATTGTGTCTTCGT--------AACTCACC--AT--TTTTGTTAATTCC-----T-A-T-A-----------TCACGCTCCAGTAGTTCTAC-TTA-AT-TGCTTGTT--TTCTGTATT-GATTGCGTTGTC-CTT--ATATTGACAACCTTTTTTA---G-AAA--TACTGCATTTGAATAATACTTAAAGCAGC--AAC-----ACAAAGATGGTCGGTTGGACAGGT----GTTTTA--------------CA--ACTTTTAT-------T-GCA-AAG-AAA-----TTCA---GTTGGGCACAAAGC-CATTATCT-TCGAT--TTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAACTCGCGCAAAGTCAACAGCAGAACATTGCTA-ATCC-ATTGCG--GTCATCAAACAACG------------------AT-CACAAACAGTGTCGTTTACAGATTATGACATT-T---T-------------------AAATCAAACAGCTCACAATCCACT-C-C-------------CTAGAGCGCACA------TAT-C-------------------------TTCCGCACA-------CTGCAATATTGCTGGATTC---GTCATCAATGATTCTGAG--ACTC-------A--TAAAAT--GA--C-GCAG--------AAATGCTA---ACAAGCAGTTT----TGTTTCAA-CG-----ATGAATTTCGATTTTTAC-TCATAAACCT--GAA-TTGAAATCTC----GTGT------AT----TGGAT-GCCAAAAT---GAA----GTTTTGAACAAAATTACATCCA---CAAGACATACC-G-GTTTTAGAGGGGg
gi|4 : ACTGGCTAAATATTCTTTAGAATTTGAGGACA---------------------T--TA---AA--AT-CCTAAAATCG-GTCATTGT--------AACTC-------------GTAATTTCTC----TAA-T-GC---AAGTGATTCAGGTACAAGTAGTCT-AT-CAA-Aagatgttacagtg
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaGTAGTC-TATCAAAAT--GTAACCGCTTTTT---G-AAAAATGCCGTGTCTGAATGATGG-CAACAGGAC--AACTGAAAGC----------AGGTGT----------GT------------------CACTA------T-------TTGCAGA-G-AGAATATATTTCAATATTG--CACAAAACACCGTATCT-T-GCC--TTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaaATCGCTTTATCCGACTGCGTCGTCTTCGT-CAATG------------------ATTCACAA-CGGCGTTATCTACAACATCTGGGAT--------G---CA-CA--GAATATCAGATGAGACTGTTTGCAATGGACT-ACC-GG-ATGCAGGAATTAAAGCACGCG------GAC-CT-ATTTC--TG--------GCATTGTTCTG-AC-TCT----C--CAACATTAACGGAACC---GACTTC-TTGGT-CTTAG--TCT-----------------------C-ACAG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|5 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcCAGAGGTCTAAG-A-CGGAAGA-----GGGT---------T----AGGAA-GCCAAAAT---TAATGCTATGGTGTGCAATATTGAATCCA---GGAGGCTGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|6 : ggTCTGT--------GACTC--T---------CGAATATTTCC----T-AAT-GC---ATTTGATTCAGGCACC-GTAGTCA-AT-CAA-A----------------ATAT----CTGCGTTGTC-TTT-----T--G-----------A---G-AAA---------------TGATGTTTAACGCAAC--AAC-----GC----------AATTGGAC--------GTCTGGAAGCAGGTGCGTCACA--A------TTTGCAGCT-GCA-A-A-AGA-----TTTTAATGTTG--CAAAACGCTCTTTAACT-T-GCC--TTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAACCACGCGTGACGTCAGCAACACAAGATCGCTTCATCCGATTGCGTAATCTTTGT-CGACG------------------ATTCACAA-CTGATTCATCgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
gi|6 : aaaaATCAGACTGTTTGCAATCGACT-A-CGGG-ATGTTGGGATTGGAGCGagactgtttgcaatcgactacgggatgttgggattggagcg
gi|7 : aaaatctgtgactctcgaatatttcctaatgcatttgattcaggcaccgtagtcaatcaaaatatctgcgttgtcttttgagaaatgatgtttaacgcaacaacgcaattggacgtctggaagcaggtgcgtcacaatttgcagctgcaaaagattttaatgttgcaaaacgctctttaacttgcctttggaacagactgcaacaaaatggcacaacaaatgattgtcacagagcagataaaccacgcgtgacgtcagcaacacaagatcgcttcatccgattgcgtaatctttgtcgacgattcacaactgattc-CA--GAATATCAGATTAGACTATT----------------GG-ATGCTAGGATTAAAGTACATGTACAAAGACACATG--TAG-TGATGTACTTGCATTGTTCTG-TCATCTGACTCTGCAACATTGCTGGAACC---AACTTCAGAGGT-ATCGG--ACTCTGGACATA--GAAAAT--GA--CCAAGG--------CTATGCTGTT-G-GGACAGTTT----TGCT-CAG-TG-----ATGAATCTCGATTTTTATCTTAGGCGTCT--G-G-TGGAAGAATC-GGAG----------T----AGGAT--------------A-G--GTT----GCAAAATCACATCTA---GGAGTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAG
gi|8 : cacttgaccttgcagcacaaatttgGCCAGATTAC-----A---CTTT---GATACATCTA-AAG----------ATT---TAGAGGACAG-----TCATACAAT---AG-------AA------T------TT-TCATACCCAATCAT-CTCAAATTCG-ATCCCTTT--------CACTT--G--AT--TGTTGTAAATTCCG----A-A-T-GC---ACGTTATTCAGGCACCAGTAATCC-AT-CAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAAT--------GCTTT------------------GCCTGAATGATAGTCAACGCAAC--AAC-----GC----------GATTGGA-----------------------------CG--A------C-------T-GGA-A-GCAGA-----T
gi|9 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaaA-ACGTTACT-----GTT---TATTG-ATAGGTATTCCATAGAATTTGAGGACATTAAA------A------CC-TCCTT---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-T-GC---ATCTGATTCAGGCACCAATAGTTT-AT-CGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTgtgtaaagg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222222222 111 22222 555555555555555555555555555 11111111 33333333333 1111111 1111 22222 111111111 333333333333333333333333333333333333333333333333333333333333333333333333 11111 444444444444444444 8888888888888888888 22222222 666666666666666666666666666666 44444444 111 11 666666666666666666666666666666666666 222 1111 22222 1111111 55555555555555555555555555555555555555555555555 111 111 33 2222 22222
lowQualScore : 11 222222222 000 4 2 33333 666 1 0 00 3 666666666666666666666666666 44 3 88888 11111111 99999999999 2222222 6 3 555 1 55 4 3 4 3 1 2 66 7777 4 4 66 0000 0 11111 5 222222222 22 77 999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 44444 1 99 1 55 5 5 77 4 1 33 2 44 22 0 4 6 4 3 2 77 11 6 999999999999999999 6 3 1 0000000000000000000 1 0 6 1 11111111 1 0 777777777777777777777777777777 8 22222222 0 1 1 444 0 5 8 1 11 777777777777777777777777777777777777 555 5 7777 8 8 00000 0 7 1 3333333 44444444444444444444444444444444444444444444444 7 6 111 1 000 6 1 0 0 0 1 7 44 3 8888 1 1 2 1 77777
lowQualScore : .. ......... ... . . ..... ... . . .. . ........................... .. . ..... ........ ........... ....... . . ... . .. . . . . . . .. .... . . .. .... . ..... . ......... .. .. ........................................................................ . . . . ..... . .. . .. . . .. . . .. . .. .. . . . . . . .. .. . .................. . . . ................... . . . . ........ . . .............................. . ........ . . . ... . . . . .. .................................... ... . .... . . ..... . . . ....... ............................................... . . ... . ... . . . . . . . .. . .... . . . . .....
lowQualScore : 00 777777777 000 0 1 77777 444 0 8 55 7 111111111111111111111111111 66 3 66666 22222222 99999999999 4444444 7 3 888 6 33 4 4 4 6 1 2 99 5555 2 4 99 2222 2 88888 0 222222222 77 99 333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7 7 33333 0 22 7 77 7 7 99 0 7 11 5 66 88 2 2 5 2 5 5 77 77 7 222222222222222222 7 7 0 3333333333333333333 0 3 3 7 66666666 6 4 000000000000000000000000000000 0 22222222 8 4 0 000 8 6 0 4 00 222222222222222222222222222222222222 000 0 0000 0 0 00000 8 0 0 5555555 33333333333333333333333333333333333333333333333 5 3 777 0 222 7 4 8 2 7 0 3 00 7 3333 0 0 5 0 00000
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC-GGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Reference ( family-948 ) : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC-GGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
gi|1 : GAAT--CACCTGATTAC-----T---CCTT---GTTACATTTA-ATGCTATT----TGCT---CATTGGTTAGATATCCCATAGATTTTGAGGACAAT-GA------TATGTGTTT-TCACA---AA--AT-CCTAAAATCA-GTCTCTAT--------TACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ATGTGATTCAGGCACCAGTAGTCC-AT-CAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAAT--GTAACCACTTTAG---GAAAA--TGCCATCTTTGAATGATGTTCAACACAAC--AAT-----GC----------AATTGAA---------GT------------------CA--G------T-------T-GCA-A-G-AGA-----TTTAAATGTTG--CACAAAGCACCGTATCTAT-TCT--TTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGACCAT-CATGATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGC-CAAAGTATCTCATCTTCATTAACATTCACAA-CAGTGTCATCTACAGCATCTGCCATTCC---TGGGCCCTCCA--GAATATCACAACAGATTGTTCACAATCGATTAA-G-GG-AAGCTAGGATTAAA---TGCA------GAC-TA-G--TTGATG--------GCATTGTTCTG-ATA-------CTGCAACATCACCAGAACC---GACTTCAATGAT-CTTAG--ACTCCG-----A--GATTAT--GGA-C-ATGG--------CAACCTTG---GGGAACAATTT----GGTT-CAA-TG-----ACAAATCTCAATTTTTACTGCAGACGCCT--T-A-TGGAAGACTCAAGAGTGT------AT----AGGA--GTTAAAA----GAA-GC-ATTTTGTACAAAA-TGCATCCA---GGATGTGGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCA
gi|10 : gagtA-ACGTTACT-----GTT---TATTGGATAGGTATTCCATAGAATTTGAGGACATT-AA------AA-----CC-TCCTA---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-TAGC---ATGTGATTCAGGCACCAATAGTTT-AT-CGA-AAGTGCAGGTT--CTTGGTATCGGGTTacaaaacaatatcagacc
gi|11 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagAAT--CATCTGACTACATCAGTACACCTT---GTTACAATTACATCTTATTCTGTTGTT---TACTGAATAGATATTCtttcatct
gi|11 : TATT----CATTAGATACTGGATAGATATTCATTAGAATTTGAGGATGAT-AAAACTTGT------TT-ACATA---TA--AT-CCTAAAATCA-ATCT-TGTATTATTTAAACTC--T---TGATGTTGCAAGTTCCattagatactggatagatattcattagaatttgaggatgataaaacttgtttacatataatcctaaaatcaatcttgtattatttaaactcttgatgttgcaagttcctaaataaatcagacgt
gi|12 : aatcatctgactacatcagtacaccttgttacaattacatcttattctgttgtttactgaataga-ACGCT-CT----TGTT---TGCTGGTTGGATATTTCATAGAATTTTAGGACAAT-A---------------------------------C--AAATCG-GTCTCTGT--------AACTC--TTAAT--TCTTTTAAGTTCCT----A-A-A-AC---ACGTTATTCGGGCACCAGCAGTGC-ATTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAAT--TTAACCGCTTTTT---G-AGA--taaataaatcagacgt
gi|13 : ------T------TC-TCATA---AA--AT-CCTAAAACGG-ATGTTTAT--------AACTC--TCAAT--TGTTGTAAGTT-CC----T-ATT-GC---ACGTGATGCAGGGACCa
gi|13 : aacgtgC-CTC--AAAT--GTAACTGCTTTTTAA-G-AAA--TATCGCGTCTGCATGATGAACAACATAATTGAA-------C----------GACTGGA---------tcaaatgtaactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|14 : aacgtgttctcataaaatcctaaaacggatgtttataactctcaattgttgtaagttcctattgcacgtgatgcagggaT--CGCCGGATTAC-----T---CTTT---GTTACATCTA-TCGCT-TT----TATT---TACT------------------------GGACAAT-AA------------------------AA--CT-CCTAAAA--A-TTCTC-----------AA---------T--TGCTGTAAGTTCCA----A-A-T-GC---ACGTTATCCAGACAaacaggtgtcacaatatgcagttg
gi|15 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctGAATGCCACCTGCTTAT-----T---CCAT---GTCACATCTA-ACGCTAATA---TGT-----ACCGAATAGATATTGTCTAGAATCTGAGGACAAT-AAAACG--T------TTATTATA---CA--GT-CCTACAATT--GTCTCTGT--------GGCTT--TCAGT--TGTTGTAAGTTCCTAAAAT-A-T-GCCAGAAGTGAT
gi|16 : aCGTGTTGTCAGGAGCTCAGAATCACTGTA-CCTATTAC-T--TCTTTGT-CAACG------------------ATTCACAA-CATAGTCATTTCCAGCATTTGATATT-C----G---------------------------TGTTTGCACTCAACC-A-T-GGAATGCTGGGATTACAGCG
gi|17 : acaagtatacaaatct------------------CA--A------T-------T-GAA-A-G-AGA-----ATTAAATATTG--CACAAAGCACTAAATTT-T-GCCTTTTTG----AAATATCAA
gi|18 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttgAAT--CGCTTGATTAC-----A---CTTT---GATACATCT
gi|19 : acgatagtaatttttcgctgaatcttttcaaacaatctccatatacattttaggggatataaaataCAGAGGTCT--A-AACGGAAGA-------GTGT------AT----AGGA--GCCAAAAT---TAA--T-GCTATGTGCAATATTGAATCCA---GGAGGCTGACC-T-G-T
gi|2 : ggggTCTA-ATGCTATT-----GTT---TACTGTACACGTCTTCTACATAATTTGAGGACAAT-GA-------------------------A--A---CTAAAATCG-ATCTCTTT--------AATTG--TTGAT--AGTTGTAAGTTCCT----A-A-T-GT---ACGTGATTCAGGAACCAGTAGTCG-AT-CAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAAT--GTAACCATTTTTGTGAG-AAA--TACCGCATCTGAACAATGCTCAAAGAAAG--AAC-----GCAATTTGAC--GACTGGAAGCAGGTGTGTAACAATTTG---------CA--G------T-------T-GCA-A-G-GGA-----TTTCAGTGTTG--CATAAATCACGATATAT-C-GCC--TATGAAACA--TA-----AA--------AACAAATGATAGTCACTAAGTAGGTAGATGGCACGTGGTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGTCGTATTT-T-CAACT------------------ATTCTCAA-CATCGTCACCTACTTCAGCTGTCATT-CCTGTGA---TT-CTTTGAATATCAGTCCAGTCTGTTTGCAGCCAACT-A-C--------TGGGATTAGAGCGCGCA------GAC-CG-G--TCG-TA--------ACATTGTTCCA-ACTTCTT---CTTCAATGGTCTCGGACTCATAGAGT---ATGGT-CACAGCAACGCCG-----AAGGACAGTTTGGTTC-AGGGATGATTCTCAACTTTGACTGCGGATACTTCAGAAGGTA-CAGACGCCAAAATGGATT--GATTTCTACTTCAGAGGTAT--G-A-TGGACGACGC-AGAATGTTCAACTATTCTCAACATCGTCAACATCGTGAA--C-GTTTTGCGCAAAATTGCATCCAATTGGAGGCTGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAg
gi|20 : aaaaaagagtaaagcataacatggatttttcactgattctatAATCACCATATCT-T-GTC--TTTAGAGCAGATATTAACACCATAGTTCAA
gi|3 : tctttcaaatttaaggacaatAC-----T---CTTTTCTGTGACATCTA-TGGCTATT-----GAA---TAGTAGATGCATGTATTACAGAATTTGTGGA--GT-G-------T------TT-TCGTA---AA--ATTCCTGCAATTGTGTCTTCGT--------AACTCACC--AT--TTTTGTTAATTCC-----T-A-T-A-----------TCACGCTCCAGTAGTTCTAC-TTA-AT-TGCTTGTT--TTCTGTATT-GATTGCGTTGTC-CTT--ATATTGACAACCTTTTTTA---G-AAA--TACTGCATTTGAATAATACTTAAAGCAGC--AAC-----ACAAAGATGGTCGGTTGGACAGGT----GTTTTA--------------CA--ACTTTTAT-------T-GCA-AAG-AAA-----TTCA---GTTGGGCACAAAGC-CATTATCT-TCGAT--TTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAACTCGCGCAAAGTCAACAGCAGAACATTGCTA-ATCC-ATTGCG--GTCATCAAACAACG------------------AT-CACAAACAGTGTCGTTTACAGATTATGACATT-T---T-------------------AAATCAAACAGCTCACAATCCACT-C-C-------------CTAGAGCGCACA------TAT-C-------------------------TTCCGCACA-------CTGCAATATTGCTGGATTC---GTCATCAATGATTCTGAG--ACTC-------A--TAAAAT--GA--C-GCAG--------AAATGCTA---ACAAGCAGTTT----TGTTTCAA-CG-----ATGAATTTCGATTTTTAC-TCATAAACCT--GAA-TTGAAATCTC----GTGT------AT----TGGAT-GCCAAAAT---GAA----GTTTTGAACAAAATTACATCCA---CAAGACATACC-G-GTTTTAGAGGGGg
gi|4 : ACTGGCTAAATATTCTTTAGAATTTGAGGACA---------------------T--TA---AA--AT-CCTAAAATCG-GTCATTGT--------AACTC-------------GTAATTTCTC----TAA-T-GC---AAGTGATTCAGGTACAAGTAGTCT-AT-CAA-Aagatgttacagtg
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaGTAGTC-TATCAAAAT--GTAACCGCTTTTT---G-AAAAATGCCGTGTCTGAATGATGG-CAACAGGAC--AACTGAAAGC----------AGGTGT----------GT------------------CACTA------T-------TTGCAGA-G-AGAATATATTTCAATATTG--CACAAAACACCGTATCT-T-GCC--TTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaaATCGCTTTATCCGACTGCGTCGTCTTCGT-CAATG------------------ATTCACAA-CGGCGTTATCTACAACATCTGGGAT--------G---CA-CA--GAATATCAGATGAGACTGTTTGCAATGGACT-ACC-GG-ATGCAGGAATTAAAGCACGCG------GAC-CT-ATTTC--TG--------GCATTGTTCTG-AC-TCT----C--CAACATTAACGGAACC---GACTTC-TTGGT-CTTAG--TCT-----------------------C-ACAG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|5 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcCAGAGGTCTAAG-A-CGGAAGA-----GGGT---------T----AGGAA-GCCAAAAT---TAATGCTATGGTGTGCAATATTGAATCCA---GGAGGCTGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|6 : ggTCTGT--------GACTC--T---------CGAATATTTCC----T-AAT-GC---ATTTGATTCAGGCACC-GTAGTCA-AT-CAA-A----------------ATAT----CTGCGTTGTC-TTT-----T--G-----------A---G-AAA---------------TGATGTTTAACGCAAC--AAC-----GC----------AATTGGAC--------GTCTGGAAGCAGGTGCGTCACA--A------TTTGCAGCT-GCA-A-A-AGA-----TTTTAATGTTG--CAAAACGCTCTTTAACT-T-GCC--TTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAACCACGCGTGACGTCAGCAACACAAGATCGCTTCATCCGATTGCGTAATCTTTGT-CGACG------------------ATTCACAA-CTGATTCATCgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
gi|6 : aaaaATCAGACTGTTTGCAATCGACT-A-CGGG-ATGTTGGGATTGGAGCGagactgtttgcaatcgactacgggatgttgggattggagcg
gi|7 : aaaatctgtgactctcgaatatttcctaatgcatttgattcaggcaccgtagtcaatcaaaatatctgcgttgtcttttgagaaatgatgtttaacgcaacaacgcaattggacgtctggaagcaggtgcgtcacaatttgcagctgcaaaagattttaatgttgcaaaacgctctttaacttgcctttggaacagactgcaacaaaatggcacaacaaatgattgtcacagagcagataaaccacgcgtgacgtcagcaacacaagatcgcttcatccgattgcgtaatctttgtcgacgattcacaactgattc-CA--GAATATCAGATTAGACTATT----------------GG-ATGCTAGGATTAAAGTACATGTACAAAGACACATG--TAG-TGATGTACTTGCATTGTTCTG-TCATCTGACTCTGCAACATTGCTGGAACC---AACTTCAGAGGT-ATCGG--ACTCTGGACATA--GAAAAT--GA--CCAAGG--------CTATGCTGTT-G-GGACAGTTT----TGCT-CAG-TG-----ATGAATCTCGATTTTTATCTTAGGCGTCT--G-G-TGGAAGAATC-GGAG----------T----AGGAT--------------A-G--GTT----GCAAAATCACATCTA---GGAGTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAG
gi|8 : cacttgaccttgcagcacaaatttgGCCAGATTAC-----A---CTTT---GATACATCTA-AAG----------ATT---TAGAGGACAG-----TCATACAAT---AG-------AA------T------TT-TCATACCCAATCAT-CTCAAATTCG-ATCCCTTT--------CACTT--G--AT--TGTTGTAAATTCCG----A-A-T-GC---ACGTTATTCAGGCACCAGTAATCC-AT-CAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAAT--------GCTTT------------------GCCTGAATGATAGTCAACGCAAC--AAC-----GC----------GATTGGA-----------------------------CG--A------C-------T-GGA-A-GCAGA-----T
gi|9 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaaA-ACGTTACT-----GTT---TATTG-ATAGGTATTCCATAGAATTTGAGGACATTAAA------A------CC-TCCTT---AA--AT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-T-GC---ATCTGATTCAGGCACCAATAGTTT-AT-CGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTgtgtaaagg
blockSeqs : GC ATCAGTACA TCT C A CTGTT AGA G T AAAACTTGTTTACATA TC T TTGTG ATTATTTA TTAATTC TAAAAT T A CAG T CT T G T A G A TC CGGG C T CA TGAC TGTGA . AATGCCGTG AA TG GCAATTTGACGACTGGAAGCAGGTGTGTAACAATTTGCAGT T G A C ATATA A GG A TA . C TT A A TC C AG GG G A T T T CG TG A . A A A TCCTGTGATTCTTT G T A ATGGA T TACAAAGACACATGTAGTGATGTACTT C ATCTGACT C C ATA A T C CA CGAAGGACAGTTTGGTTCAGGGATGATTCT ACT C AGAA T A CCAAA T G AAGAC CGCAGAATGTTCAACTATTCTCAACATCGTCAACATCGTGAAC A T ATT T TGT T T T T TA G ATGT T A C T TAAAC
blockSeqs : . T . . A AT . A A AAAACGTTTATTATA . . TCAA . TCAATTG CTA A . . C T . A . T A G . TTTG T . . TT TTAA . TATCGCG CT . GCAATTGGACGTCTGGAAGCAGGTGCGTCACAATTTGCAGC . . . . . C . A GA . . . G G TT C CA GA T G T T G CG CA . . . C T GCACA A T A ACCGG T GACCTATTTCTG . TTCTT G T . A . G . TGGACATAGAAAATGACCAAGG TT C . . . . C G AAAC CTCGTGTATTGGATGCCAAAATGAA T C . T T . A A . . . .
blockSeqs : . T . . A C . G A AATTTTCATACCC . . TCGG . TCAGTTG CT . . . C C . A . T A G . TTTA T . . GT TT . TACCGCA CT . ACAAAGATGGTCGGTTGGACAGGTGTTTTACAACTTTTAT . . . . . A . A CA . . . A T TT C TG . A G T T G AA CG . . . T A TCG G C C ACGGG T GACCGGTCGTA . TCT A A . . . T . ATAAAATGACGCAG . C . . . . . A GAAT GGGTTAGGAAGCCAAAATTAATGCT T A . A A . A
blockSeqs : . A . . A T . G A AAAACCTCCTA . . CGGA . TTGATAG TA . . . C G . T . T G T . TTGA A . . GT TA . TACTGCA TT . TGAAAGCAGGTGTGTCACTAT . . . . . C . A AT . . . A G TG A C C T G G TG . . . C G TTT G T G AC T TATC . A G A . . . C . CACAG . . . . . . G GAT GTGTATAGGAGCCAAAATTAAT G T . T G . G
blockSeqs : T . . A T . A A AAAACCTCCTT . . TCGA . ACCATTT CT . . . A T . A . T A G . CGGG T . . GT TT . G GT . GCGATTGGACGAC . . . . . T . T CG . . . G A GC . . . . . T . . . A . T G CC . C GGT ATCGGAGTAGGATAG . . . A G .
blockSeqs : A . . A . . T A GTTTTCGTA . . TCGG . TTGATG AA . . . C A . A . A G A . TGA C . . G A . . G . . . . . . . TT . . . . . . . . GG .
blockSeqs : . A . . G G TTA . . TCGA . GATTG TA . . . A C . A . . . . . . . . . . . .
blockSeqs : . . . . G T AA . . TTG . TTG CT . . . T T . G . .
blockSeqs : . . . . G . GA . . AT . T GA . . . C
blockSeqs : . . . . . A . . . . . CT . . . T
blockSeqs : . . . . . . T . . . .
blockSeqs : . .
blockSeqCons : ***** AACTCTA******************** TATTG****** ****************** TCCG*************** GACNATCT********************** CT****** AAGGTGGCCAG************************* GAAC*** CCGTGTATNGGATGCCAAAATNAAN**********************
originalCons : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT----TGTT---TACTGGATAGATATTCCATAGAATTTGAGGACAAT-AA------T------TT-TCATA---AA--AT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATT-C---TGG---CT-CA--GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCG------GAC-CG-G--TCG-TG--------GCATTGTTCCG-ACATCT----CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-----A--GANAAT--GG--C-ACGG--------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCT--G-A-CGGAAGACTC-GGAGTGT------AT----AGGAT-GCCAAAAT---GAA-GC-GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
finalCons : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACATCTA-ACGCTATT-----GTT---TACTGGATAGATATTCCATAGAATTTGAGGACAATAACTCTA--------------------AA--AT-CCTAAAATCG-GTCTCTGT--------AACTCTATTG------TTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-AT-CGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---G-AAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTCGTCTTCGT-CAACG------------------ATTCACAA-CAGCGTCATCTACAGCATCTGNCATTCCG---------------GAATATCAGATCAGACTGTTCGCAATCGACT-A-C-GG-ATGCTGGGATTAGAGCGCGCGGACNATCT----------------------GCATTGTTCCG-ACCT------CTGCAACATTGCCGGAACC---GACTTCAATGGT-CTCAG--ACTCAAGGTGGCCAG-------------------------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCTGAAC---GGAAGACCGTGTATNGGATGCCAAAATNAAN----------------------GTTTTGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 11 222222222 111 111111 88888888888888888888888888888888888 11111111 44444444444 1111111 1111 22222 111111111 333333333333333333333333333333333333333333333333333333333333333333333333 11111 55555555555555555555 8888888888888888888888888 111 222222 000000000000000000000000000000000000 3333333333 111 111 11 33333333333333333333333333333333333333333333 222 1111 22222 22222222 6666666666666666666666666666 1111 1111 111 111 33 2222 22222
lowQualScore : 11 222222222 000 444444 4 1 22 1 44444444444444444444444444444444444 1 3 1 9999 1 11111111 00000000000 2222222 6 3 555 1 55 4 3 4 3 1 2 66 7777 4 4 66 0000 0 11111 777777777 22 77 999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 44444 1 99 1 55 5 5 77 4 1 33 2 44 22 0 4 6 4 3 2 88888888888888888888 3 6 2 88888 1 88 0000000000000000000000000 111 6 1 333333 1 0 666666666666666666666666666666666666 6666666666 444 1 444 0 5 8 1 11 99999999999999999999999999999999999999999999 555 5 7777 8 8 00000 0 7 1 11111111 0000000000000000000000000000 3 9999 7 9999 6 1 111 1 000 6 1 0 0 0 1 7 44 3 8888 1 1 2 1 77777
lowQualScore : .. ......... ... ...... . . .. . ................................... . . . .... . ........ ........... ....... . . ... . .. . . . . . . .. .... . . .. .... . ..... ......... .. .. ........................................................................ . . . . ..... . .. . .. . . .. . . .. . .. .. . . . . . . .................... . . . ..... . .. ......................... ... . . ...... . . .................................... .......... ... . ... . . . . .. ............................................ ... . .... . . ..... . . . ........ ............................ . .... . .... . . ... . ... . . . . . . . .. . .... . . . . .....
lowQualScore : 00 777777777 000 444444 0 0 77 5 88888888888888888888888888888888888 3 3 2 0000 9 22222222 55555555555 4444444 7 3 888 6 33 4 4 4 6 1 2 99 5555 2 4 99 2222 2 88888 222222222 77 99 333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7 7 33333 0 22 7 77 7 7 99 0 7 11 5 66 88 2 2 5 2 5 5 33333333333333333333 7 7 5 77777 0 55 0000000000000000000000000 999 3 7 777777 6 4 222222222222222222222222222222222222 4444444444 000 0 000 8 6 0 4 00 22222222222222222222222222222222222222222222 000 0 0000 0 0 00000 8 0 0 33333333 7777777777777777777777777777 7 2222 5 3333 3 7 777 0 222 7 4 8 2 7 0 3 00 7 3333 0 0 5 0 00000
consensus : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACA------TCTAACGCTATT-GTTTACTGGATAGATATTCCATAGAATTTGAGGACAAT--A--------A---C--------T-C-------TAAAAT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-A-TCGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---GAAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTC-------------------GTCTTCGT-CAACGATTCACAA-CAGCGTCATCTACAGCATCTGNCATTC-C----------G-------GAATATCAGATCAGACTGTTCGCAATCGACTA-C-GG-ATGCTGGGATTAGAGCGCGCG------GA-CT-------------ANTT---G----CATTGTTCCGAC------CTCTGCAACATTG---CCGGAACC---GACTTCAATGGT-CTCAG--ACTCCG-------A--AGA------T---GGC-CA-GG----------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCTGA---ACG--GAAGA--C-----GTG----TATN----GGA--GCCAAAATN---AACGTT-T--TGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
Reference ( family-948 ) : NNNNGAAT--CGCCTGATTAC-----T---CCTT---GTTACA------TCTAACGCTATT-GTTTACTGGATAGATATTCCATAGAATTTGAGGACAAT--A--------A---C--------T-C-------TAAAAT-CCTAAAATCG-GTCTCTGT--------AACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ACGTGATTCAGGCACCAGTAGTCC-A-TCGA-ATGCGCGGGTT--CTCGATATTTGGTTGCGTCGTC-TTT--AAAT--GTAACCGCTTTTN---GAAA--TACCGCGTCTGAATGATGNTCAACGCAAC--AAC-----GC----------GATTGGA---------GT------------------CA--A------T-------T-GCA-A-G-AGA-----TTTNAATGTTG--CACAAAGCACCGTATCT-T-GCC--TTTGGAGCAGATATCAACAACATGGTTCAACAAATGATCGTCACAGAGCAGGTAGACCGCGCGTGATGTCAGCAGCACAAGATCGCTTTATCCGATTGCGTC-------------------GTCTTCGT-CAACGATTCACAA-CAGCGTCATCTACAGCATCTGNCATTC-C----------G-------GAATATCAGATCAGACTGTTCGCAATCGACTA-C-GG-ATGCTGGGATTAGAGCGCGCG------GA-CN-------------ATCT---G----CATTGTTCCGAC------CTCTGCAACATTG---CCGGAACC---GACTTCAATGGT-CTCAG--ACTC---------A--AGG------T---GGC-CA--G----------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATTTTTACTTCAGAGGTCTGA---ACG--GAAGAC-C-----GTG----TATN----GGAT-GCCAAAATN---AANGTT-T--TGCGCAAAATTGCATCCA---GGAGGCNGACC-G-G-TTTGGAGGGGGTAGTGCTATGATGTGGGCAGCAATATCCTATACAGGCAGGACAGCATTGGTTCGCATAGAANGTACTTTGACGGCT-AACGGTATATTGATGAAGTC----ATACAGCCATACGTGGTTCCAATNATGCNGCGTCCCCGANCAGTAAACAACTCCA
gi|1 : GAAT--CACCTGATTAC-----T---CCTT---GTTACA------TTTAATGCTATTTGCTCATTGGTTAGATATCCCATAGATTTTGAGGACAAT--G--------A---TATGTGTTTT-CA------CAAAAT-CCTAAAATCA-GTCTCTAT--------TACTC--T--AT--TGTTGTAAGTTCCC----T-A-T-GC---ATGTGATTCAGGCACCAGTAGTCC-A-TCAA-ATGCACAGATT--CTCGATATTTGATTGTGTTGTC-TTT--AAAT--GTAACCACTTTAG---GAAAA-TGCCATCTTTGAATGATGTTCAACACAAC--AAT-----GC----------AATTGAA---------GT------------------CA--G------T-------T-GCA-A-G-AGA-----TTTAAATGTTG--CACAAAGCACCGTATCTAT-TCT--TTTGGAGCAGATATCAACAGCATGGTTCAACAAATGATTGTCACAGATCAGGTCGACCAT-CATGATATCAGCAGCACAGGACTGCTTCAACTGATTGTGTCCTCTTTGCCAAAGTATCTCATCTTCAT-TAAC-ATTCACAA-CAGTGTCATCTACAGCATCTGCCATTC-CTGGGCCCTCCA-------GAATATCACAACAGATTGTTCACAATCGATTA-A-GGGAAGCTAGGATTAAA---TGCA------GA-CT-------------AGTT---GATGGCATTGTTCTGAT------A-CTGCAACATCA---CCAGAACC---GACTTCAATGAT-CTTAG--ACTCC--------G--AGA------TTATGGA-CATGG----------CAACCTTG---GGGAACAATTT----GGTT-CAA-TG-----ACAAATCTCAATTTTTACTGCAGACGCCTTA----TG--GAAGAC-TCAAGAGTG----TATA----GGA--GTTAAAAGA---AGCATT-T--TGTACAAAAT-GCATCCA---GGATGTGGACC-G-G-TTTGGAGGGGGTAGTGTCATGATGTGGGCAGTAATATCCTATACAGGCAGGACAGCACTGATTCACATACAAGGTACTTTGATGGCTCAACAGTGTATTGATGAAGTC----ATACAGCTACACGTGGTTCTAATGATGTTGTATCCCAGAGCAG-----AATTCCA
gi|10 : gagtAACGTTACT-GTTTATTGGATAGGTATTCCATAGAATTTGAGGACATT--A--------AAACC--------T-CC------TAAAAT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-TAGC---ATGTGATTCAGGCACCAATAGTTT-A-TCGA-AAGTGCAGGTT--CTTGGTATCGGGTTacaaaacaatatcagacc
gi|11 : aaaaaaaaagaaacgcatatagtaaacacttttttgccgagtcttttgaaatagAAT--CATCTGACTACATCAGTACACCTT---GTTACAATTACATCTTATTCTGTT-GTTTACTGAATAGATATTCtttcatct
gi|11 : TACTGGATAGATATTCATTAGAATTTGAGGATGATAAA--------A---C--------T-TGTTTACATATAAT-CCTAAAATCA-ATCT-TGTATTATTTAAACTC--T---TGATGTTGCAAGTTCCattagatactggatagatattcattagaatttgaggatgataaaacttgtttacatataatcctaaaatcaatcttgtattatttaaactcttgatgttgcaagttcctaaataaatcagacgt
gi|12 : aatcatctgactacatcagtacaccttgttacaattacatcttattctgttgtttactgaatagatattcattagaACGCTCTT-GTTTGCTGGTTGGATATTTCATAGAATTTTAGGACAAT-----------A---C-----------------------------AAATCG-GTCTCTGT--------AACTC--TTAAT--TCTTTTAAGTTCCT----A-A-A-AC---ACGTTATTCGGGCACCAGCAGTGC-ATTCAA-ATGCACGGGTT--CTCGATATTTTGTTGTATCGTCTTTT--AAAT--TTAACCGCTTTTT---GAGA--taaataaatcagacgt
gi|13 : ---C--------T-CA------TAAAAT-CCTAAAACGG-ATGTTTAT--------AACTC--TCAAT--TGTTGTAAGTT-CC----T-ATT-GC---ACGTGATGCAGGGACCa
gi|13 : aacgtgttC-CTC--AAAT--GTAACTGCTTTTTAA-GAAA--TATCGCGTCTGCATGATGAACAACATAATTGAA-------C----------GACTGGA---------tcaaatgtaactgctttttaagaaatatcgcgtctgcatgatgaacaacataattgaacgactggaaacaggtgtcacaatatgcagttg
gi|14 : aacgtgttctcataaaatcctaaaacggatgtttataactctcaattgttgtaagttcctattgcacgtgatgcagggaT--CGCCGGATTAC-----T---CTTT---GTTACA------TCTATCGCTTTT-ATTTACT------------------------GGACAAT--A--------------------------------AAACT-CCTAAA---------------------AATTC--TCAAT--TGCTGTAAGTTCCA----A-A-T-GC---ACGTTATCCAGACAaacaggtgtcacaatatgcagttg
gi|15 : agaaagaaactcatttgtagtattttttgttgaatctttcatacattttttaagctGAATGCCACCTGCTTAT-----T---CCAT---GTCACA------TCTAACGCTAAT-ATGTACCGAATAGATATTGTCTAGAATCTGAGGACAAT--AAAACGTTTA---T--------T-A-------TACAGT-CCTACAATT--GTCTCTGT--------GGCTT--TCAGT--TGTTGTAAGTTCCTAAAAT-A-T-GCCAGAAGTGAT
gi|16 : aCGTGTTGTCAGGAGCTCAGAATCACTGTA-CCTATTAC-T---------------------TCTTTGT-CAACGATTCACAA-CATAGTCATTTCCAGCATTTGATATT--C----------G-----------------------TGTTTGCACTCAACCA-T-GGAATGCTGGGATTACAGCG
gi|17 : acaagtatacaaatct------------------CA--A------T-------T-GAA-A-G-AGA-----ATTAAATATTG--CACAAAGCACTAAATTT-T-GCCTTTTTG----AAATATCAA
gi|18 : cattgctcaacgcaacaaaggaattagacaactggaaacaggtcactggagtatcacaatttgAAT--CGCTTGATTAC-----A---CTTT---GATACA------TCT
gi|19 : acgatagtaatttttcgctgaatcttttcaaacaatctccatatacattttaggggatataaaataCAGAGGTCTAA---ACG--GAAGA--------GTG----TATA----GGA--GCCAAAATT---AATGCT-A--TGTGCAATATTGAATCCA---GGAGGCTGACC-T-G-T
gi|2 : gggg------TCTAATGCTATT-GTTTACTGTACACGTCTTCTACATAATTTGAGGACAAT--G--------A-------------------------AA---CTAAAATCG-ATCTCTTT--------AATTG--TTGAT--AGTTGTAAGTTCCT----A-A-T-GT---ACGTGATTCAGGAACCAGTAGTCG-A-TCAA-ATGCACGGTCT--CTCGATATTTTATTGCATTGAC-TTT--AAAT--GTAACCATTTTTGTGAGAAA--TACCGCATCTGAACAATGCTCAAAGAAAG--AAC-----GCAATTTGAC--GACTGGAAGCAGGTGTGTAACAATTTG---------CA--G------T-------T-GCA-A-G-GGA-----TTTCAGTGTTG--CATAAATCACGATATAT-C-GCC--TATGAAACA--TA-----AA--------AACAAATGATAGTCACTAAGTAGGTAGATGGCACGTGGTTTCAGCTGCACAAGACCGCTTTATCAGATTGCGTC-------------------GTATTT-T-CAACTATTCTCAA-CATCGTCACCTACTTCAGCTGTCATTC-CTGT-------GATTCTTTGAATATCAGTCCAGTCTGTTTGCAGCCAACTA-C--------TGGGATTAGAGCGCGCA------GA-CC-------------GGTC---GTAA-CATTGTTCCAAC------TTCTTCTTCAATGGTCTCGGACTCATAGAGT---ATGGT-CACAGCAACGCCG-------A--AGGACAGTTT---GGTTCA--GGGATGATTCTCAACTTTGACTGCGGATACTTCAGAAGGTA-CAGACGCCAAAATGGATT--GATTTCTACTTCAGAGGTATGATGGACGACGCAGAA-T-----GTTCAACTATTCTCAACATCGTCAACATCGTGAACGTT-T--TGCGCAAAATTGCATCCAATTGGAGGCTGACA-A-G-TTTTGAGGG--TAGTGTTATGATGGGGACAATAATATCATATACAGGCAAGACAATATTGGTTCACATAGAATTTAC-TTGACGGC-------TATATTGGTAAAGTC----ATATAGTCATTCGTAGTTCCAg
gi|20 : aaaaaagagtaaagcataacatggatttttcactgattctatAATCACCATATCT-T-GTC--TTTAGAGCAGATATTAACACCATAGTTCAA
gi|3 : tctttcaaatttaaggacaatAC-----T---CTTTTCTGTGACA------TCTATGGCTATT-GAATAGTAGATGCATGTATTACAGAATTTGTGGAGTGT--T------------T--------T-CG------TAAAATTCCTGCAATTGTGTCTTCGT--------AACTCACC--AT--TTTTGTTAATTCC-----T-A-T-A-----------TCACGCTCCAGTAGTTCTA-CTTA-AT-TGCTTGTT--TTCTGTATT-GATTGCGTTGTC-CTT--ATATTGACAACCTTTTTTA---GAAA--TACTGCATTTGAATAATACTTAAAGCAGC--AAC-----ACAAAGATGGTCGGTTGGACAGGT----GTTTTA--------------CA--ACTTTTAT-------T-GCA-AAG-AAA-----TTCA---GTTGGGCACAAAGC-CATTATCT-TCGAT--TTTTAATCGGATATTAAAGGCATAGTTCGTTAAATGATC-TTATAGAGCA--TAAAACTCGCGCAAAGTCAACAGCAGAACATTGCTA-ATCC-ATTGCG---------------------GTCATCAAACAACGAT-CACAAACAGTGTCGTTTACAGATTATGACATT--------------------------TTAAATCAAACAGCTCACAATCCACTC-C-------------CTAGAGCGCACA----------T-------------ATCT--------------TCCGCA------CACTGCAATATTG---CTGGATTC---GTCATCAATGATTCTGAG--ACTC---------ATAAAA------T---GACGCA--G----------AAATGCTA---ACAAGCAGTTT----TGTTTCAA-CG-----ATGAATTTCGATTTTTAC-TCATAAACCTGA---ATT--GAAATCTC-----GTG----TATT----GGAT-GCCAAAATG---AA-GTT-T--TGAACAAAATTACATCCA---CAAGACATACC-G-GTTTTAGAGGGGg
gi|4 : ACTGGCTAAATATTCTTTAGAATTTGAGGACA----------------------------T-------TAAAAT-CCTAAAATCG-GTCATTGT--------AACTC-------------GTAATTTCTC----TAA-T-GC---AAGTGATTCAGGTACAAGTAGTCT-A-TCAA-Aagatgttacagtg
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaGTAGTC-TATCAAAAT--GTAACCGCTTTTT---GAAAAATGCCGTGTCTGAATGATGG-CAACAGGAC--AACTGAAAGC----------AGGTGT----------GT------------------CACTA------T-------TTGCAGA-G-AGAATATATTTCAATATTG--CACAAAACACCGTATCT-T-GCC--TTTGAAGCAGATATGAACAACATGGTTCAACAAATTATCATCGCatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcatcgctttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|4 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaaATCGCTTTATCCGACTGCGTC-------------------GTCTTCGT-CAATGATTCACAA-CGGCGTTATCTACAACATCTGGGATGCAC----------A-------GAATATCAGATGAGACTGTTTGCAATGGACTACC-GG-ATGCAGGAATTAAAGCACGCG------GACCT-------------ATTTCTGG----CATTGTTCTGA-------CTCTCCAACATTA---ACGGAACC---GACTTC-TTGGT-CTTAG--TCTC---------A-------------------CA--G----------CAACGCTG---GCGGACAGTTT----GGTT-CAG-CG-----ATGAATCTCGATtttatccgactgcgtcgtcttcgtcaatgattcacaacggcgttatctacaacatctgggatgcacagaatatcagatgagactgtttgcaatggactaccggatgcaggaattaaagcacgcggacctatttctggcattgttctgactctccaacattaacggaaccgacttcttggtcttagtctcacagcaacgctggcggacagtttggttcagcgatgaatctcgat
gi|5 : agagaaaaacacagcagtaattttgcgctaaatcttttcatcaaattttttatcacattttttgtggttgtcaagattactactatatcgtaactggctaaatattctttagaatttgaggacattaaaatcctaaaatcggtcattgtaactcgtaatttctctaatgcaagtgattcaggtacaagtagtctatcaaaatgtaaccgctttttgaaaaatgccgtgtctgaatgatggcaacaggacaactgaaagcaggtgtgtcactatttgcagagagaatatatttcaatattgcacaaaacaccgtatcttgcctttgaagcagatatgaacaacatggttcaacaaattatcCAGAGGTCTAAG--ACG--GAAGA--------GGG----T-TA----GGAA-GCCAAAATT---AATGCTATGGTGTGCAATATTGAATCCA---GGAGGCTGACCTGTG-TTTAG---GGGTAGTGCTATGGTGTGGGTAGCAATATCCTATACAAGCAGAACTGCATTGGTTCGCATTGAGAGTACTTTGACGGTTAAACGGTATATTGATGAAGTCATGTATACAGCCATAGGTGGTTCCAATTATGCAGCGTCCCCAATCAGTAAACAACTCCA
gi|6 : ggTCTGT--------GACTC--T---------CGAATATTTCC----T-AAT-GC---ATTTGATTCAGGCACC-GTAGTCA-A-TCAA-A----------------ATAT----CTGCGTTGTC-TTT-----T--G-----------A---GAAA---------------TGATGTTTAACGCAAC--AAC-----GC----------AATTGGAC--------GTCTGGAAGCAGGTGCGTCACA--A------TTTGCAGCT-GCA-A-A-AGA-----TTTTAATGTTG--CAAAACGCTCTTTAACT-T-GCC--TTTGGAACAGACTGCAACAAAATGGCACAACAAATGATTGTCACAGAGCAGATAAACCACGCGTGACGTCAGCAACACAAGATCGCTTCATCCGATTGCGTA-------------------ATCTTTGT-CGACGATTCACAA-------------------CTG--ATTC------------------------ATCAG-----ACTGTTTGCAATCGACTA-CGGG-ATGTTGGGATTGGAGCGgactacatactgttcgtctaacacgtggtctgcaaagacataaaatccagggtctccactgagcatcgaaatgacaatatttgaaccctatatcgaaaatgcatgggacgaactggaaaagcgtatccaccaaaaggcaaccacaacctcatattctacaagtgacccaagctctgcagttaatgtggatcatc
gi|7 : aaaaTTG-C----------A-------GAATATCAGATTAGACTATT---------------GG-ATGCTAGGATTAAAGTACATGTACAAAGA-CACATGTAGTGATGTACTT---G----CATTGTTCTGTCATCTGACTCTGCAACATTG---CTGGAACC---AACTTCAGAGGT-ATCGG--ACTCTGGACATAGA--AAA------T---GAC-CAAGG----------CTATGCTGTT-G-GGACAGTTT----TGCT-CAG-TG-----ATGAATCTCGATTTTTATCTTAGGCGTCTG----GTG--GAAGA----------------ATC----GGA--G-TAGGAT-----AGGTT-------GCAAAATCACATCTA---GGAGTCAGACT-G-A-TGTGGAAGGGGTAGTGCTATGATGTGGGCAGCAGTGGTTCATGCAG
gi|8 : cacttgaccttgcagcacaaatGCCAGATTAC-----A---CTTT---GATACA------TCTAAAG------ATTTAGAGGACAGTCATACAATAGAATTT-----TCAT-----------A---C--------C-C-------AATCAT-CTCAAATTCG-ATCCCTTT--------CACTT--G--AT--TGTTGTAAATTCCG----A-A-T-GC---ACGTTATTCAGGCACCAGTAATCC-A-TCAA-CTGCAGGGGTT--GTCGATATTTGATTGCG------TTC--AAAT--------GCTTT-----------------GCCTGAATGATAGTCAACGCAAC--AAC-----GC----------GATTGGA-----------------------------CG--A------C-------T-GGA-A-GCAGA-----T
gi|9 : aaaaaaaaattaaatagtaatttctcggtgaatcttttcaagcaatcttcacatacattttagggagtctaagatgaaAACGTTACT-GTTTATTG-ATAGGTATTCCATAGAATTTGAGGACATT--A--------AAACC--------TCC-------TTAAAT-CTTAA-------TCCTTGA--------AACTC----------------GGT--CC----T-A-T-GC---ATCTGATTCAGGCACCAATAGTTT-A-TCGATAAGTGCAGGTTTCCTTGGTATCGGGTT-TTTCATC-TTgtgtaaagg