lowQualScore : 111111111111111111111111111
lowQualScore : 1 333 1 666666666666666666666666666 2222222222 111111 22 7777777777777777777777777777777777777777777777777777777777777777777 11111 11111111 11111111 111 111 22 55555555555555555555555555555555555555 11 1111 888888888888888888888888888888 111 44444444444444444444444444444 1 99999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 7 6 77 000 5 5 888 66 55 99999 4 4 666666666666666666666666666 22 22 77 5 1111111111 5 0 00 99999 3 555555 888 44 7777777777777777777777777777777777777777777777777777777777777777777 1 11111 3 44444444 3 88888888 666 3 777 5 000 0 77 5 44 00000000000000000000000000000000000000 99 4 55 44 5 7777 000000000000000000000000000000 333 3 11111111111111111111111111111 5 5 0 0 5 4 5 6 3 0 5 66666666666666666666666666666666666666666666666666666666666666666666666 0 4 2 9 7 0
lowQualScore : . . .. ... . . ... .. .. ..... . . ........................... .. .. .. . .......... . . .. ..... . ...... ... .. ................................................................... . ..... . ........ . ........ ... . ... . ... . .. . .. ...................................... .. . .. .. . .... .............................. ... . ............................. . . . . . . . . . . . ....................................................................... . . . . . .
lowQualScore : 0 0 99 000 7 3 888 33 55 33333 0 4 000000000000000000000000000 66 11 99 0 9999999999 0 4 44 11111 6 777777 444 99 1111111111111111111111111111111111111111111111111111111111111111111 8 77777 3 99999999 6 11111111 444 6 777 7 999 7 99 7 11 88888888888888888888888888888888888888 22 3 88 22 6 0000 999999999999999999999999999999 111 0 77777777777777777777777777777 7 7 1 1 0 5 0 4 4 5 0 22222222222222222222222222222222222222222222222222222222222222222222222 7 0 7 4 0 4
consensus : GAAATAAAT--TAATGTTTA-GTTTCTCGGGCAC---TTT-TTTT--GAAA----AA-GAGATGA-GGCAGGC--AG-GGTTTTTT------GTTTTGTTTTTTGTT--TTTTTTACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTA--T-C-TT-C-CTTTTTCA--TGCACA-GAGTT-ATATAGA----GTA---AG-CA------ATGG--GAT-----------A-----------TTATTTTAA-----T-TT-----CAACAA-A--A-A-TAGCTTCAAT---T-ACTTACTA-T-AAG-TG--AATACTATT--ATTCTT-AAACATTTGCACAC------A--T--G----AGTA---TGC--AT------TAA--ANTAT--TATTTGATAG----AA--------------TTT-A-------TT--AAA-C-CTTCCGA-AA---GTTTTAC-T--------------AA-AA-AGTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CAAT-----AAAATAA-----ATATTG--GG---AAAA-AAA------TT-------AGATGCG-GT-------ACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Reference ( gi|1 ) : GATACAAAT--T---GTTTA-GTTTCTAAGGCAC---TTT-TTTT--GAAA----AA-GAGATGA-GGCAG-C--AG-GGTTTTTTATTTTTGTTTTGTTTTTTGTT--TTTTTTACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTA--T-C-TT-C-CTTTTTCAC-TGCACA-GAGTT-ATATAGA----GTA---AG-CA------ATGG--TAT-----------A-----------TTATTTTAA-----T-TT-----CAACAA-A--A-A-TCGCTTCAAT---T-ACTTACTA-T-AAA-TG--AATACTATT--ATTCTT-AAA-ATTTGCACAC------A--T--G----AGTA---TG---AT------TAA--ATTAT--TATTTGATAG----AA--------------TTT-A-------TC--AAA-C-CTTCCGATAA---GTTGTAC-T--------------AA-AA-AGTCTA-TAACA-TAAAAGTTACCTCATTTACATAAAT-CAATA---TAAAATAA-----ATATTG--GG--GAAAA-AAA------TT-------AGATGCG-AA-------ACCTTTTGAACA-GATGTGGTGGTGCCCGAGAAACTAAAG
gi|3 : GAAATAAAT--TAATGTTTA-GTTTCTCAGGCAC---TTT--------ACA----AA-AAGATGA-GACAGGC--AG-G----------------TTGTTTGTTGTTGTTTTTTTACTTTGCTGTAATTA----------CGA-GTTTTCTATGTTGAGTGAAGGATTGAGCTA--TAT-TT-C-CTTTCTC-C-TGTA-------T-GCAT-------GTA---AG-CA------ATGG--GAT------------------------TAT---AA-----T-TT-----TCACAA-A---------------------------TA-A-AAA-CT--ACTAGTATT--ATTCTT-CAATATTTGCACACTCGTACA--T--T----AGTA---TGC--AT------CAA--ATTAT--TATT--ATAA----AAAATATACTAAGAATTTT-A-------TC--AAAAT-CTTTGGA-AA---GTTTTAC-CCCCACCCCCCCAAAAA-AA-AATCTA-TAAGA-TAAGAGTTACCCCATTTACATAAAT-AAATAAACAAAAATAG-----ATTTT---------AAA-AAA------TC--------TATGCG-GT-------ACCTTTTCCACG-GATGCGGCGGTGCCTGAGAAAC
gi|8 : aAAAT--TAATGTTCA-GTTTCTCTGGCAC---TTT-TTTT--GAAA----AA-GAGATGA-GGCAGGC--AG---------------------TTTTT--TT--TTTTATAC-TGGTTGTAAT-A----------CGA-GTTATCTTTCCTTTTTGA-----TGA--TA--T-T-TT-CTCCTTTTCAT-T-CACAGGAGTT-ATATAGA----GTA---AA-CA------TTGG--
gi|9 : gctaaaaaAAATAAT---GTTTA-GTTTCATGGGCACCTTTTT-TTTT--GAAA-------------A-GGCAG-----GTGGTTTTTT-TTTgtaatgggataattatc
gi|11 : ggccaaaaaaAAAT--TAATGTTTA-GTTTCTCAAGCAC---TTT-TTTTTGGAAAATTTAA-GAGGTTA-GG--G-TTAAG-GG------------GTTTT-------------TTTTAACTTGGCTGTAAT-AATCTGTAATCTAA-GTTATCTT-------------------TTA--T-CTTT-C-CTTTTTCA--TGCACATGAGTTAATATATA----GTT---AA-CA------AGGG--GAT-----------A-----------gggaagggggggggggttggctgtaatatgagtaatctttcctttctgatgagttatattccctttttcattgcacaggagttgtatagagtaagctatgggatagt
gi|26 : ggctacaaa--T---GTATA-ATTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGatt
gi|21 : taa--T---GTTTATGTTTCTCGGGCAC---TTTCTTTT--GCAA----AA-AAGGTCA-TGCAcaggctgtttt
gi|23 : ggctaaaacataatttaa--T---GTTTA-GCTTGTCAGGCCC---TTT-------AAAA----AATAAGATGAAGGAAG-C--CG-G----TTTA-----ATTTTGTTGTTTGTT--TTTTaatagtgattattcttaaacatcttaatac
gi|18 : aaaaagttaaGCAC---TTT-TTTT--GAAA-------GAGATGA-GGCAGGC--AG-GGTTTTTT---TTTG----GTTTTTTTTT--CTTTTTACTTGGTTGAAGT-A----------TGA-TTTATCTTTCCTTTTTGA-----TGAGTTA--T-C-TT-T-Cac
gi|2 : T-TGTT--TAAA----AA-GAGATGA-GGCAG-T--AG-G-----TTA-----GTTTTGTTTTTTGTT--TTTTTTACTTGGCTGTGAT-A----------CGT-GTTATCGTACCTTTC---------------------------TTTTTCA--TGTTCATGATTT-ATATAGATAGAGTATTAAG-CA------ATGG--GAT-----------AA----------TTATTTTTA-----T-TT-----TAACAA-A--A-A-GAGCTTCAATCATT-ACTTACTA-TTAAG-TG--AATACTACTTCATTCTA-AAC-ATTTGCACAC------ACAT--G----TGTA---TGC--AT------CAATCAGTATGGTATTTGATAATATCAA--------------CTT-AAAATTATTA--AAA-T-CTTTCAAGAAAACGTGTTAC-T--------------AAAAA-AGTCTA-TAACA-TGAGAGTTTCCTCATAGACGTAAGT-CAAC------AAAGAA-----ATATTGAAGA--AAAAA-AAA------TA-------GGATGTG-GC-------ACCTTTAAAACT-GATGTGGAGGTGCCTAAGATACTAAAG
gi|10 : TT--GAAA----AA-GAGATGA-GGCAGGT--AG-GGTTT-------------------TTGTT--TTGTTTACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTAAGT---TT-C-CTTATTCA--TGCACACGAGTT-ATA--------------AG-CA------ATGG--GAT-----------ACATCATCATAATTATTTTTA-----T-TT-----TCATAA-A--A-A-TAGCTTCAAT---T-ACTTACTattaattttttgt
gi|14 : TTTTTACTTGACTGTAAT-A----------TGAAGTTATCTTTCCTTTCTGA-----TGA-TTA--T-CTTT-C-CTTTTTCA--TGCACACGAGTA-ATA---------TA---AG-CA------ATGG--GATAAATCACCATAA-----------TTATTTTTATTTTTT-TT-----C-ACAA-A--A-A-TAGCTTCAAT---TCACTTACTA-
gi|9 : TTGGCTGTAAT-A----------TGA-GTAATCTTTCCTTTCTGA-----TGAGTTA--T-A-TTCC-CTTTTTCAT-TGCACAGGAGTT-GTATAGA----GTA---AG-CT------ATGG--GAT-----------A-----------
gi|19 : ggccaaaaaaaaataatgtttagtttcatgggcacctttttttttgaaaaggcaggtggtttttttttgggaagggggggggggA-----TGAGTTA--T-C-TTTC-CTTTTTCA--TGCACACGAGTA-ATATA------------AG-CA------ATGG--GAT-----------AAATCACCATAATTATTTTTA-----T-TTTTTTTCA-CAA-A--A-A-TAGCTTCAAT---T-ACTTACTgt
gi|12 : A-----TGAGTTA--CGT-TT-T-CTTTCTTATGTGCATT-GAAT--ATATAG--------------CA------ATGA--AAT--------------------------TTTTA---------T-----AAAGAATA--ACA-TGACATTA-----T-ATTTACTA-TTAAG-TG--TATACT--T--ATTCTTTAAC-ACTTGCACAT------AAAT--G----AGTAATATGC--AC------TCA--ATTAT--TATTTG
gi|25 : tttctttgttgactgtaga-----TGAGTT--------T-C-CTTTTTCA--TGCACATGAGTT-A-----------TA---AG-CA------ATGGA-TAA-----------A-----------TCATCTTAA-----T-T
gi|4 : TTA--T-C-TT-A-CTT----GC-TGTACA-T--TT-AC-TAGA----ATA---AAACA------ATGG---AT-----------T-----------TTGTTTTTA-----TATT-----CAAAAA-ATAA-A-TGGCTCTCAT---T-ACT-ACTAGT-AAG-TGCAAATA--ACT--GTTCTA-AAC-AATTGCACA-------------G----AATA---TG---ATATTTGATAG--AAGAT--T-TTCGA-AG----AA--------------GTT-G-------TTGAAAA-C-CTTCAGA-AA---GTTTTATAT--------------CA-GA-A-TCTAATGACAACAAACTTTACCTTATTTACATACAT-AAAC------AAACAA-----A-ATTG--GGGTGGGAA-AAA------CC-------ATGTGT-----------ACC--TTAAACT-GATGCAGAGGTGCCTGAAAAACTAat
gi|20 : tTA--T-C-TT-TGCCTTTACA--TGCACATGAGTC-ATA--------------AG-CA------ATGG--AATGCATCATCATAA-----------TTGTTTTAAA----T-TT-----CA-CAA-A--A-T-TAGCTTCAAT---T-ACTTACTA-tctgattagggtttttttg
gi|7 : T-C-CTTTTTCAT-TGCACA-G----------GA----GT---------------------------------------------------TTTAC-----T-TT-----CACCAA-A--A---TAGTTTCAAT---T-ACTTA-------AA-T-----TACTATT--ATTCTT-AAATATTTGCACAT------A--T--ATATAAGTA---TATGCAT------TAA--ACTATA-TACTT---AG----AA--------------TTTTA-------TT--AAA-AACTTCCTA-AA---GTTTTAC-T--------------AA-AAAAGTCTA-TAAGA-TAAGAGTTAACTCATGAACAAAAAT-CGAT------AGATAATTTTTTTTTT----------AA-AAA------TT-------AGATGCGTAATTTAAGTACATTTGGAACA-GATG
gi|17 : ACA-GAGTT-ATATAGA----GCA---AG-CATGCGTAATGGAGTA------------A-----------TCATTTTAA-----T-TT-----TCACAA-A--A-A-TAGCTTCAAT---T-ACTGACTA-T-AAAGTA--AATACTATT--ATTCTT-AAACATTTGCACAC------A--aaactaaagataag
gi|6 : TCAA-----T-TT-----TCACAA-A--A-AATAGCTTCAAT---T-ACTTACTA-A-AAG-TG--AATACTATT--ATTCTT-AAACATTTGCACAC------A--TACG----AGTA---TGC--AT------TAA--ACTAT--TATTTGATAG----AAATATACTTCAAAT-TTT-A-------TT--AAA-C-CTTCCGA-AA---ATGTTAC-TA-------------AA-AA-AGTCTA-TAACA-TAACAGTTACCTCATTTACATAAAT-CAAT------AACTAA-----ATAT------------A-AAATTTTTTTT-------AGATGCG-GT-------ACCTTTTGAACA-AATGCGGCGGTGCCTGAGAAACTAAA
gi|13 : --------------TTT-A-------TT--AAA-G-GGTTTGGAAA---ATT-TAC-T--------------TA-AA-ATTC-A-TCACA-TAACAGTTACTTCATC-----AAA--CAAT----TA---CAT-----GTATTG--GA--AAAAA-AAAAC----TT-------CCATGGA-AA-------ACCTTTTCAACA-GATGCAGGGGTGCCTGGGAAACTaatttttttt
gi|15 : atacttacaat--AAA-C-CTTCGGA-AA---GTTTTAC-C--------------AA-AA-A-------AATC-TAAGAGTTACCTCCTTTACAAAAATACAA------AAAATAA-----AACTTG-------AAAATAAA------TT-------TCATATG-GT-------ACCTTTTCCACG-GATGCAGCAGTGCCTGAGAAAC-AAAGgttgattaatattgtttggc
gi|16 : TA-TAA-A-GAAGAGTTACCTCATTTACATAAAT-CAATA------AATAA-----GTAATG--GG----------A------TTTTTTTTTAGATGCG-AT-------ACCTTTTGAATA-CATGCGGCGGTGCCTGAGAAATTAAAGaaggtttttttt
gi|24 : -------AGATGCG-GT-------ACCTTTAGAACA-GATGCGGCGGT----GAGAAACTAAAGattattt
gi|22 : gaacTTTGA-CATGATGTGGCGGTGCCTGAGAAATAAAAGattaatttttatttg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AAATAATTATCAATAGTTTAGCATGCAAAATAAATCAAATGTTGATGAGGGAGGCAGGTTTTGGAGTTTTGTGGGAGGTTTTTTGTACTTACCGGTAGCTATGGTACGAGTTATCGTTCCTTTGTATGTTGACTGAACAATGAGTTATGTTTTGTTTATCATGCAGAGAAAAAGCAATAGGATTATATGTGTTATAAAAGTGCATACACTTGCACATATGAGCATGCATCCAATCATTATTTAAAAATTTAACAAAACCTTCGAATAGTTTTAC
Alignments
lowQualScore : 1 8888888888888888888888888888 222222222222222 1111111111 2222222222222222222222 55555555555 11111 1111 11111 111 111111 1111111 1111 11 666666666666666666666666666 11 33333333333333 11 111111 4444444444444444444444444444444444 11111111
lowQualScore : 4 5 3 777 4 55 7777 3 0 55 6666666666666666666666666666 55 666666666666666 3 5555555555 3 22 2 77777 3 2 888 777 5 7777777777777777777777 8888888 2 777777 99999999999 2 1 77777 2 2 1111 44 3 44 888 3 11111 0 888 8888 66 1 66 222222 777 2222222 888 66 5 0000 66 1 11 777 000000000000000000000000000 5 55 66 666 4 4 66 4 44444444444444 5 22 4 2 4 2 4 55 333333 3 5 5555555555555555555555555555555555 33333333 0 3
lowQualScore : . . . ... . .. .... . . .. ............................ .. ............... . .......... . .. . ..... . . ... ... . ...................... ....... . ...... ........... . . ..... . . .... .. . .. ... . ..... . ... .... .. . .. ...... ... ....... ... .. . .... .. . .. ... ........................... . .. .. ... . . .. . .............. . .. . . . . . .. ...... . . .................................. ........ . .
lowQualScore : 6 0 1 888 0 00 7777 6 5 00 8888888888888888888888888888 00 444444444444444 6 9999999999 6 66 0 77777 5 7 999 222 7 4444444444444444444444 7777777 7 777777 77777777777 7 4 11111 9 9 3333 22 1 22 555 1 99999 4 333 1111 11 9 11 888888 000 6666666 888 99 0 6666 99 0 99 777 777777777777777777777777777 0 00 33 222 4 4 11 4 44444444444444 0 66 4 9 4 0 0 55 444444 8 7 6666666666666666666666666666666666 22222222 1 6
consensus : GAAANAAATTAATGTTTA-GTTTCTCGGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AGGG--TTT-----------TTTTGTTTTTTGTT--TTTTTT---------------ACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-CTTTTTCA-TGCACA-GAGTT-ATATAG--AG-----TAA-------G-CA------ATGGGATA----------A-TTATTTTAA-----T-T-TCA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATT----AA--ATTAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Reference ( family-947 ) : GAAATAAATTAATGTTTA-GTTTCTCGGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AGGGTTTTTT------G---TTTTGTTTTTTGTT--TTTTTT---------------ACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-CTTTTTCA-TGCACA-GAGTT-ATATAG--AG-----TAA-------G-CA------ATGGGAT-----------A-TTATTTTAA-----T-T-TCA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATT----AA--ANTAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
gi|1 : GATACAAATT---GTTTA-GTTTCTAAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAG-C--AGGGTTTTTTATTTTTG---TTTTGTTTTTTGTT--TTTTTT---------------ACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-CTTTTTCACTGCACA-GAGTT-ATATAG--AG-----TAA-------G-CA------ATGGTAT-----------A-TTATTTTAA-----T-T-TCA---ACAAA--AA-TCGC--TTCA---ATT-AC-----TTACTA-T-AAATG--AATACTA--TTATTCTTAAA-ATTTG--CAC------AC--AT--G----AG---TAT--G--ATT----AA--ATTAT--TATTTGATA----------GAA--------------TTT-ATC--AAAC-CTTCC--GATA-A--GTTGTAC-T--------------AAAA-A-GTCTA-TAACA-TAAAAGTTACCTCATTTACATAAAT-CAATAT-----AAAATAAATATTGG--GGA---AAAAAA-------TT------A-GATGCG--------AAACCTTTTGAACA-GATGTGGTGGTGCCCGAGAAACTAAAG
gi|10 : TT--GAAA----AA-GAGATGAGGCAGGT--AGGGTTTTT---------------GT--TTTG-------TTT---------------ACTTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTAAG-T-TT-C-CTTATTCA-TGCACACGAGTT-A--------------TAA-------G-CA------ATGGGATACATCATCATAA-TTATTTTTA-----T-T-TTC---ATAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|11 : AAA-AAATTAATGTTTA-GTTTCTCAAGCAC---TTT-TTTTTGGAAAATTTAA-GAGGTTAG---GGTTAAGGG---------------------------GTT--TTTTTTA--------------ACTTGGCTGTAAT-AATCTGTAATCTAA-GTTATCTT-------------------TT-AT-CTTT-C-CTTTTTCA-TGCACATGAGTTAATATAT--AG-----TTA-------A-CA------AGGGGAT-----------A-
gi|12 : ggctacT--TTCTTT---------------G-TTGACTGTAGA-A----------TGA-GTTACGTTTTCTTTCTTA-----TG------------------------TGCATT-GAAT--ATATAG---------------------CA------ATGAAAT----------------TTTTA-----------TA---A--AG--AA-TAAC--ATGAC--ATT-ATAT---TTACTA-TTAAGTG--TATACT----TATTCTTTAACACTTG--CAC------ATAAAT--G----AGTAATAT--G-CACT----CA--ATTAT--TATTTGatt
gi|13 : --------------TTT-ATT--AAAG-GGTTT--GG-A-A--AATTTAC-T--------------TAAA-A-TTC-A-TCACA-TAACAGTTACTTCATC-----AAA--CA--AT-----TACATG--TATT-G--GAA---AAAAAAAAC----TT------C-CATGGA--------AAACCTTTTCAACA-GATGCAGGGGTGCCTGGGAAACT
gi|14 : atacttacaatTTTTT---------------ACTTGACTGTAAT-A----------TGAAGTTATCTTTCCTTTCTGA-----TGA-TT-AT-CTTT-C-CTTTTTCA-TGCACACGAGTA-ATA------------TAA-------G-CA------ATGGGATAAATCACCATAA-TTATTTTTATTTTTT-T-TC----ACAAA--AA-TAGC--TTCA---ATTCAC-----TTACTA-gttgattaatattgtttggc
gi|15 : --AAAC-CTTCG--GA-A-A--GTTTTAC-C--------------AAAA-A--------AATC-TAAGAGTTACCTCCTTTACAAAAATACA--A------AAAATAAA-ACT-T--GAA---AATAAA-------TT------T-CATATG--------GTACCTTTTCCACG-GATGCAGCAGTGCCTGAGAAAC-AAAG
gi|16 : TA-TAA-A-GAAGAGTTACCTCATTTACATAAAT-CA--AT------AAATAAGTAAT-G--GG---------ATTTTTTTTT------A-GATGCG--------ATACCTTTTGAATA-CATGCGGCGGTGCCTGAGAAATTAAAGaaggtttttttt
gi|17 : ACA-GAGTT-ATATAG--AG-----CAA-------G-CATGCGTAATGGAGT-----------AATCATTTTAA-----T-T-TTC---ACAAA--AA-TAGC--TTCA---ATT-AC-----TGACTA-TAAAGTA--AATACTA--TTATTCTTAAACATTTG--CAC------AC--Aattattt
gi|18 : GCAC---TTT-TTTT--GAAA-------GAGATGAGGCAGGC--AGGGTTTTTT----------TTTGGTTTTTTTTT--CTTTTT---------------ACTTGGTTGAAGT-A----------TGA-TTTATCTTTCCTTTTTGA-----TGAGTT-AT-C-TT-T-C
gi|19 : A-----TGAGTT-AT-C-TTTC-CTTTTTCA-TGCACACGAGTA-ATA------------TAA-------G-CA------ATGGGATAAATCACCATAA-TTATTTTTATTTTTT-T-TC----ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|2 : T-TGTT--TAAA----AA-GAGATGAGGCAG-T--AGG----TTA------G---TTTTGTTTTTTGTT--TTTTTT---------------ACTTGGCTGTGAT-A----------CGT-GTTATC----------G-----------T-AC-C-TT-T-CTTTTTCA-TGTTCATGATTT-ATATAGATAGAGTATTAA-------G-CA------ATGGGATA----------A-TTATTTTTA-----T-T-TTA---ACAAA--AA-GAGC--TTCAATCATT-AC-----TTACTATT-AAGTG--AATACTACTTCATTC-TAAACATTTGCACAC------AC--AT--G----TG---TAT--G-CATC----AATCAGTATGGTATTTGATAATATCAACTTAAA--------------ATT-ATTA-AAAT-CTTTCAAGA-A-AACGTGTTAC-TA-------------AAAA-A-GTCTA-TAACA-TGAGAGTTTCCTCATAGACGTAAGT-CA--AC-----AAAG-AAATATT-GAAGAA---AAAAAA-------AT------AGGATGTG--------GCACCTTTAAAACT-GATGTGGAGGTGCCTAAGATACTAAAG
gi|20 : T-AT-C-TT-TGCCTTTACA-TGCACATGAGTC-ATA--------------A-------G-CA------ATGGAATGCATCATCATAA-TTGTTTTAAA----T-T-TCA----CAAA--AT-TAGC--TTCA---ATT-AC-----TTACTA-attaattttttgt
gi|21 : ATAATTTAATGTTTATGTTTCTCGGGCAC---TTTCTTTT--GCAA----AA-AAGGTCATGCAAAT--AG
gi|22 : ggctaaaacATATAT-GA--AT-----ACAGTAAA-ATT-G-------------A-------TC------A--ATGCA--------GCAGTGTTTGA-CATGATGTGGCGGTGCCTGAGAAATAAAAGtgattattcttaaacatcttaatac
gi|23 : aAAA-AAGTTAATGTTTA-GCTTGTCAGGCCC--------TTT--AAAA----AATAAGATGAAGGAAGC--CGG---TTTA------A---TTTTGTTGTTTGTT--TTTTattaattttttttgc
gi|24 : ------A-GATGCG--------GTACCTTTAGAACA-GATGCGGCGG----TGAGAAACTAAAGac
gi|25 : gaac-----TGAGTT-------T-C-CTTTTTCA-TGCACATGAGTT-A--------------TAA-------G-CA------AT-GGATAA---------A-TCATCTTAA-----T-T-attaatttttatttg
gi|26 : TAATGTATA-ATTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGat
gi|3 : GAAATAAATTAATGTTTA-GTTTCTCAGGCAC---TTT--------ACA----AA-AAGATGAGACAGGC--AGG-------------------TTGTTTGTTGTTGTTTTTTT---------------ACTTTGCTGTAATTA----------CGA-GTTTTCTATGTTGAGTGAAGGATTGAGCT-ATAT-TT-C-CTTTCTCC-TGTA-------T-GCAT-----G-----TAA-------G-CA------ATGGG-------------A-TTA---TAA-----T-T-TTC---ACAAA--TA-AA-------A---ACT-AC-----T---------AG---------TA--TTATTCTTCAATATTTG--CACACTCGTAC--AT--T----AG---TAT--G-CATC----AA--ATTAT--TATT--ATA----------AAAAATATACTAAGAATTTT-ATCA-AAAT-CTTTG--GA-A-A--GTTTTAC-CCCCACCCCCCCAAAAAAA-A-ATCTA-TAAGA-TAAGAGTTACCCCATTTACATAAAT-AA--ATAAACAAAAATAGATTTT----------AAAAAA-------TC--------TATGCG--------GTACCTTTTCCACG-GATGCGGCGGTGCCTGAGAAACcaggctgtttt
gi|4 : aTT-AT-C-TT-A-CTTGCT----GTACA-T--TT-AC-TAG--AA-----TAA-------AACA------ATGG-AT-----------T-TTGTTTTTA-----TAT-TCA---AAAAATAAA-TGGC--TCTC---ATT-AC-----T-ACTAGT-AAGTGCAAATA--A--CTGTTCT-AAACAATTG--CAC------A-------G----AA---TAT--GATATTTGATAG--AAGAT--T-TTCGA-A----------GAA--------------GTT-GTTGAAAAC-CTTCA--GA-A-A--GTTTTATAT--------------CAGA-A--TCTAATGACAACAAACTTTACCTTATTTACATACAT-AA--AC-----AAA-CAAA-ATT-G--GGGTGGGAAAAA-------CC------A---TGTG---------TACCTT--AAACT-GATGCAGAGGTGCCTGAAAAACTA
gi|5 : tGATGAGGGAGGC--AGG---TTTT------GGAGTTTTGTGGGAGGTT--TTTTGT---------------ACTTACCGGTA------------------GCTATGGT---------A-----CGAGTT-AT-CGTT-C-CTTT--------------GT--ATGTTG--AC-----TGA-------A-CA------ATGAGTT-----------A-T-GTTTTGT-----T-TATCATGCAGAGA--AA-AAGCAATAGG---ATT-ATATGTGTTA-TA-A-AAGTG--CATAC----------------ACTTG--CAC------AT--AT--G----AG---CAT--G-CATC----CA--ATCAT--TATTTA--A----------AAA--------------TTT-AAC--AAAA-CCTTC--GA-ATA--GTTTTAC-tctgattagggtttttttg
gi|6 : aaataattatcaatagtttagcatgcaaaataaatcaaatgttTCAA-----T-T-TTC---ACAAA--AAATAGC--TTCA---ATT-AC-----TTACTA-A-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--ATACG----AG---TAT--G-CATT----AA--ACTAT--TATTTGATA----------GAAATATACTTCAAAT-TTT-ATT--AAAC-CTTCC--GA-A-A--ATGTTAC-T--------------AAAA-AAGTCTA-TAACA-TAACAGTTACCTCATTTACATAAAT-CA--AT-----AAC-TAAATAT-------------AAAA-------TTTTTTTTA-GATGCG--------GTACCTTTTGAACA-AATGCGGCGGTGCCTGAGAAACTAAA
gi|7 : TTTTAC-----T-T-TCA---CCAAA--A--TAGT--TTCA---ATT-AC-----TTA-------AAT-----TACTA--TTATTCTTAAATATTTG--CAC------AT--AT--ATATAAG---TATATG-CATT----AA--ACTATA-TACTT---A----------GAA--------------TTTTATT--AAAAACTTCC--TA-A-A--GTTTTAC-T--------------AAAAAA-GTCTA-TAAGA-TAAGAGTTAACTCATGAACAAAAAT-CG--AT------AGATAATTTTT-T--TTT---TAAAAA-------TT------A-GATGCGTAATTTAAGTACATTTGGAACA-GATGaatttttttt
gi|8 : tcctttttcattgcacaggagAAAAAAATTAATGTTCA-GTTTCTCTGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-----------------------TTTTT--TT--TTTTAT---------------AC-TGGTTGTAAT-A----------CGA-GTTATCTTTCCTTTTTGA-----TGA--T-AT-T-TT-CTCCTTTTCA-TTCACAGGAGTT-ATATAG--AG-----TAAACATTGGG-TA------ATGGGATA----------A-TTATaaactaaagataag
gi|9 : gctaAAAAAAAATAATGTTTA-GTTTCATGGGCACCTTTTT-TTTT--G--A----AA-----------AGGC--AGG--------------------TG------GTT--TTTTTTTGGGAAGGGGGGGGGGGTTGGCTGTAAT-A----------TGA-GTAATCTTTCCTTTCTGA-----TGAGTT-AT-A-TTCC-CTTTTTCATTGCACAGGAGTT-GTATAG--AG-----TAA-------G-CT------ATGGGAT-----------A-c
Alignments
lowQualScore : 5555555555555555555555555555555555 22222222222222 1111111111 22222222222222222222222 4444444444444444444444444444444444 11111 11111111111 11111 111 111111 1111111 1111 11 666666666666666666666666666 11 33333333333333 11 111111 4444444444444444444444444444444444 11111111
lowQualScore : 1 3 3 555 4 55 7777 3 0 77777 2 6666666666666666666666666666666666 55 3 11111111111111 3 5555555555 3 22 2 77777 3 2 888 2 5 2 2 2 44444444444444444444444 8888888 2 777777 1111111111111111111111111111111111 1 00000 2 2 33333333333 44 3 44 888 3 11111 0 888 8888 66 1 66 222222 777 2222222 888 66 5 0 66 0000 11 777 000000000000000000000000000 5 55 66 666 4 4 66 4 44444444444444 5 22 4 2 4 2 4 55 333333 3 5 5555555555555555555555555555555555 33333333 0 3
lowQualScore : . . . ... . .. .... . . ..... . .................................. .. . .............. . .......... . .. . ..... . . ... . . . . . ....................... ....... . ...... .................................. . ..... . . ........... .. . .. ... . ..... . ... .... .. . .. ...... ... ....... ... .. . . .. .... .. ... ........................... . .. .. ... . . .. . .............. . .. . . . . . .. ...... . . .................................. ........ . .
lowQualScore : 0 6 9 888 0 00 7777 6 5 66666 8 2222222222222222222222222222222222 00 6 44444444444444 6 9999999999 6 66 0 77777 5 7 999 7 3 7 9 9 22222222222222222222222 7777777 7 777777 5555555555555555555555555555555555 4 00000 9 9 00000000000 22 1 22 555 1 99999 4 333 1111 11 9 11 888888 000 6666666 888 99 0 2 99 6666 99 777 777777777777777777777777777 0 00 33 222 4 4 11 4 44444444444444 0 66 4 9 4 0 0 55 444444 8 7 6666666666666666666666666666666666 22222222 1 6
consensus : GAAAAAAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Reference ( family-947 ) : GAAANAAATTAATGTTTA-GTTTCTCGGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
gi|1 : GATACAAATT---GTTTA-GTTTCTAAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAG-C--AG-GGTT-T--TTTATTTTTGTTTT---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCACT-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGT----------AT-----------A----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TCGC--TTCA---ATT-AC-----TTACTA-T-AAATG--AATACTA--TTATTCTTAAA-ATTTG--CAC------AC--AT--G----AG---TAT--G--ATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATC--AAAC-CTTCC--GATA-A--GTTGTAC-T--------------AAAA-A-GTCTA-TAACA-TAAAAGTTACCTCATTTACATAAAT-CAATAT-----AAAATAAATATTGG--GGA---AAAAAA-------TT------A-GATGCG--------AAACCTTTTGAACA-GATGTGGTGGTGCCCGAGAAACTAAAG
gi|10 : TT--GAAA----AA-GAGATGAGGCAGGT--AG-GGTT-T--TT----------------------G-----TT--TTGTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTAAG-T-TT-C-C-TTATTCA-T-GCACACG-AGTT-A--------------TAA-------G-CA------ATGGGATACATCATCAT----------AA----------TTATTTTTA-----T-T-T-----TC---ATAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|11 : AAAAAATTAATGTTTA-GTTTCTCAAGCAC---TTT-TTTTTGGAAAATTTAA-GAGGTTAG---GGTTAAG-GG------------------------------G-----TT--TTTTTTAAC--------------TTGGCTGTAAT-AATCTGTAATCTAA-GTTATCTT-------------------TT-AT-CTTT-C-C-TTTTTCA-T-GCACATG-AGTTAATATAT--AG-----TTA-------A-CA------AGGGG----------AT----------AA----------TT
gi|12 : ggctacT--TTCTTT-G---------------TTGACTGTAGA-A----------TGA-GTTACGTTTTCTTTCTTA-----TG-------------------------T-GCATT-G-AAT--ATATAG---------------------CA------ATGAA----------AT-------------------------TTTTA----------------TA---A--AG--AA-TAAC--ATGAC--ATT-ATAT---TTACTA-TTAAGTG--TATACT----TATTCTTTAACACTTG--CAC------ATAAAT--G----AGTAATAT--G-CACTCA--AT----TAT--TATTTG
gi|13 : --------------TTT-ATT--AAAG-GGTTT--GG-A-A--AATTTAC-T--------------TAAA-A-TTC-A-TCACA-TAACAGTTACTTCATC-----AAA--CA--AT-----TACATG--TATT-G--GAA---AAAAAAAAC----TT------C-CATGGA--------AAACCTTTTCAACA-GATGCAGGGGTGCCTGGGAAACT
gi|14 : atacttacaatTTTTT-AC--------------TTGACTGTAAT-A----------TGAAGTTATCTTTCCTTTCTGA-----TGA-TT-AT-CTTT-C-C-TTTTTCA-T-GCACACG-AGTA-ATA------------TAA-------G-CA------ATGGGATAAATCACCAT----------AA----------TTATTTTTATTTTTT-T-T-----C----ACAAA--AA-TAGC--TTCA---ATTCAC-----TTACTA-gttgattaatattgtttggc
gi|15 : --AAAC-CTTCG--GA-A-A--GTTTTAC-C--------------AAAA-A--------AATC-TAAGAGTTACCTCCTTTACAAAAATACA--A------AAAATAAA-ACT-T--GAA---AATAAA-------TT------T-CATATG--------GTACCTTTTCCACG-GATGCAGCAGTGCCTGAGAAAC-AAAG
gi|16 : TA-TAA-A-GAAGAGTTACCTCATTTACATAAAT-CA--AT------AAATAAGTAAT-G--GG---------ATTTTTTTTT------A-GATGCG--------ATACCTTTTGAATA-CATGCGGCGGTGCCTGAGAAATTAAAGaaggtttttttt
gi|17 : ACA-G-AGTT-ATATAG--AG-----CAA-------G-CATGCGTAATGGA----------GT----------AA----------TCATTTTAA-----T-T-T-----TC---ACAAA--AA-TAGC--TTCA---ATT-AC-----TGACTA-TAAAGTA--AATACTA--TTATTCTTAAACATTTG--CAC------AC--Aattattt
gi|18 : GCAC---TTT-TTTT--GAAA-------GAGATGAGGCAGGC--AG-GGTT-T--TTT----------TTTGGTTTTTTT-----TT--CTTTTT-AC--------------TTGGTTGAAGT-A----------TGA-TTTATCTTTCCTTTTTGA-----TGAGTT-AT-C-TT-T-C-
gi|19 : A-----TGAGTT-AT-C-TTTC-C-TTTTTCA-T-GCACACG-AGTA-ATATA------------A-------G-CA------ATGGG----------AT----------AAATCACCATAATTATTTTTA-----T-T-TTTTTTCA----CAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|2 : T-TGTT--TAAA----AA-GAGATGAGGCAG-T--AG-GTTA-G--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTGAT-A----------CGT-GTTATC----------G-----------T-AC-C-TT-T-C-TTTTTCA-T-GTTCATG-ATTT-ATATAGATAGAGTATTAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTTA-----T-T-T-----TA---ACAAA--AA-GAGC--TTCAATCATT-AC-----TTACTATT-AAGTG--AATACTACTTCATTC-TAAACATTTGCACAC------AC--AT--G----TG---TAT--G-CATCAATCAG----TATGGTATTTGATAATATCAACTTAAA--------------ATT-ATTA-AAAT-CTTTCAAGA-A-AACGTGTTAC-TA-------------AAAA-A-GTCTA-TAACA-TGAGAGTTTCCTCATAGACGTAAGT-CA--AC-----AAAG-AAATATT-GAAGAA---AAAAAA-------AT------AGGATGTG--------GCACCTTTAAAACT-GATGTGGAGGTGCCTAAGATACTAAAG
gi|2 : AAAAAATTAATCTTTA-GTATCTTAGGCAC---CTattaattttttgt
gi|20 : ttgtttaaaaagagatgaggcagtaggttagttttgttttttgttttttttacttggctgtgatacgtgttatcgtacctttctttttcatgttcatgatttatatagatagagtattaagcaatgggataattatttttattttaacaaaaagagcttcaatcattacttactattaagtgaatactacttcattctaaacatttgcacacacatgtgtatgcatcaatcagtatggtatttgataatatcaacttaaaattattaaaatctttcaagaaaacgtgttactaaaaaagtctataacatgagagtttcctcatagacgtaagtcaacaaagaaatattgaagaaaaaaaaataggatgtggcacctttaaaactgatgtggT-AT-C-TT-TGC-CTTTACA-T-GCACATG-AGTC-ATA--------------A-------G-CA------ATGGA----------ATGCATCATCATAA----------TTGTTTTAAA----T-T-T-----CA----CAAA--AT-TAGC--TTCA---ATT-AC-----TTACTA-gt
gi|21 : ATAATTTAATGTTTATGTTTCTCGGGCAC---TTTCTTTT--GCAA----AA-AAGGTCATGCAAAT--AGTGATTAT--TCT----------T---
gi|22 : ggctaaaacATATAT-GA--AT-----ACAGTAAA-ATT-G-------------A-------TC------A--ATGCA--------GCAGTGTTTGA-CATGATGTGGCGGTGCCTGAGAAATAAAAGaaacatcttaatac
gi|22 : aAAAAAAATTAATCTTTT-ATTTCTCAGGCAC---attaattttttttgc
gi|23 : aatatatgaatacagtaaaattgatcaatgcagcagtgtttgacatgatgtggcgAAAAAGTTAATGTTTA-GCTTGTCAGGCCC--------TTT--AAAA----AATAAGATGAAGGAAGC---C-GGTT-TAATTT----------T---GTTGTTTG-----TT--TTTTtgc
gi|24 : ------A-GATGCG--------GTACCTTTAGAACA-GATGCGGCGG----TGAGAAACTAAAGac
gi|25 : gaac-----TGAGTT-------T-C-C-TTTTTCA-T-GCACATG-AGTT-A--------------TAA-------G-CA------AT-GG----------ATA---------AA----------TCATCTTAA-----T-T-attaatttttatttg
gi|26 : TAATGTATA-ATTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGat
gi|3 : GAAATAAATTAATGTTTA-GTTTCTCAGGCAC---TTT--------ACA----AA-AAGATGAGACAGGC--AG-G---------T----------T---GTTTGTTG-----TTGTTTTTTT-AC--------------TTTGCTGTAATTA----------CGA-GTTTTCTATGTTGAGTGAAGGATTGAGCT-ATAT-TT-C-C-TTTCTCC-T-GTA--------T-GCAT-----G-----TAA-------G-CA------ATGGG-----------------------A----------TTA---TAA-----T-T-T-----TC---ACAAA--TA-AA-------A---ACT-AC-----T---------AG---------TA--TTATTCTTCAATATTTG--CACACTCGTAC--AT--T----AG---TAT--G-CATCAA--AT----TAT--TATT--ATA----------AAAAATATACTAAGAATTTT-ATCA-AAAT-CTTTG--GA-A-A--GTTTTAC-CCCCACCCCCCCAAAAAAA-A-ATCTA-TAAGA-TAAGAGTTACCCCATTTACATAAAT-AA--ATAAACAAAAATAGATTTT----------AAAAAA-------TC--------TATGCG--------GTACCTTTTCCACG-GATGCGGCGGTGCCTGAGAAACcaggctgtttt
gi|4 : aTT-AT-C-TT-A-C-TTGCT-----GTACA-T---TT-AC-TAG--AA-----TAA-------AACA------ATGGA----------TT----------------------TTGTTTTTA-----TAT-T-----CA---AAAAATAAA-TGGC--TCTC---ATT-AC-----T-ACTAGT-AAGTGCAAATA--A--CTGTTCT-AAACAATTG--CAC------A-------G----AA---TAT--GATATTTG--ATAGAAGAT--T-TTCGA-A----------GAA--------------GTT-GTTGAAAAC-CTTCA--GA-A-A--GTTTTATAT--------------CAGA-A--TCTAATGACAACAAACTTTACCTTATTTACATACAT-AA--AC-----AAA-CAAA-ATT-G--GGGTGGGAAAAA-------CC------A---TGTG---------TACCTT--AAACT-GATGCAGAGGTGCCTGAAAAACTA
gi|5 : tGATGAGGGAGGC--AG-G-TT-T--TGG----------A---GTTTTGTGGGAGGTT--TTTTGT-AC--------------TTACCGGTA------------------GCTATGGT---------A-----CGAGTT-AT-CGTT-C-C-TTT----------------GT--ATGTTG--AC-----TGA-------A-CA------ATGAG----------TT----------A------------TGTTTTGT-----T-TAT-----CATGCAGAGA--AA-AAGCAATAGG---ATT-ATATGTGTTA-TA-A-AAGTG--CATAC----------------ACTTG--CAC------AT--AT--G----AG---CAT--G-CATCCA--AT----CAT--TATTTA--A----------AAA--------------TTT-AAC--AAAA-CCTTC--GA-ATA--GTTTTAC-tctgattagggtttttttg
gi|6 : aaataattatcaatagtttagcatgcaaaataaatcaaatgttTCAA-----T-T-T-----TC---ACAAA--AAATAGC--TTCA---ATT-AC-----TTACTA-A-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--ATACG----AG---TAT--G-CATTAA--AC----TAT--TATTTGATA----------GAAATATACTTCAAAT-TTT-ATT--AAAC-CTTCC--GA-A-A--ATGTTAC-T--------------AAAA-AAGTCTA-TAACA-TAACAGTTACCTCATTTACATAAAT-CA--AT-----AAC-TAAATAT-------------AAAA-------TTTTTTTTA-GATGCG--------GTACCTTTTGAACA-AATGCGGCGGTGCCTGAGAAACTAAA
gi|6 : AAAAAAATT----TTTA-GTTTCTCAGGCAC---aatttttttt
gi|7 : tcaattttcacaaaaaatagcttcaattacttactaaaagtgaatactattattcttaaacatttgcacacatacgagtatgcattaaactattatttgatagaaatatacttcaaattttattaaaccttccgaaaatgttactaaaaaagtctataacataacagttacctcatttacataaatcaataactaaatataaaattttttttagatgcggtaccttttgaacaaatgcggcgTTTTAC-----T-T-T-----CA---CCAAA--A--TAGT--TTCA---ATT-AC-----TTA-------AAT-----TACTA--TTATTCTTAAATATTTG--CAC------AT--AT--ATATAAG---TATATG-CATTAA--AC----TATA-TACTT---A----------GAA--------------TTTTATT--AAAAACTTCC--TA-A-A--GTTTTAC-T--------------AAAAAA-GTCTA-TAAGA-TAAGAGTTAACTCATGAACAAAAAT-CG--AT------AGATAATTTTT-T--TTT---TAAAAA-------TT------A-GATGCGTAATTTAAGTACATTTGGAACA-GATGt
gi|8 : tcctttttcattgcacaggagAAAAAAATTAATGTTCA-GTTTCTCTGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--A---GTT-T--TT----------------------------TT--TTTTAT-AC---------------TGGTTGTAAT-A----------CGA-GTTATCTTTCCTTTTTGA-----TGA--T-AT-T-TT-CTC-CTTTTCA-T-TCACAGG-AGTT-ATATAG--AG-----TAAACATTGGG-TA------ATGGG----------AT----------AA----------TTATaaactaaagataag
gi|9 : gctaAAAAAAAATAATGTTTA-GTTTCATGGGCACCTTTTT-TTTT--GAAA----A---------GGCAGGT-----GGTT-T------------------------------------TTTTTT-GGGAAGGGGGGGGGGGTTGGCTGTAAT-A----------TGA-GTAATCTTTCCTTTCTGA-----TGAGTT-AT-A-TT-C-CCTTTTTCA-TTGCACA-GGAGTT-GTATAG--AG-----TAA-------G-CT------ATGGG----------AT----------AG----------Tc
Alignments
lowQualScore : 5555555555555555555555555555555555 22222222222222 1111111111 22222222222222222222222 4444444444444444444444444444444444 11111 11111111111 11111 111 111111 1111111 1111 11 666666666666666666666666666 11 33333333333333 11 111111 4444444444444444444444444444444444 11111111
lowQualScore : 777 3 555 4 55 7777 3 0 77777 2 6666666666666666666666666666666666 55 3 11111111111111 3 5555555555 3 22 2 77777 3 2 888 2 5 2 2 2 44444444444444444444444 8888888 2 777777 1111111111111111111111111111111111 1 00000 2 2 33333333333 44 3 44 888 3 11111 0 888 8888 66 1 66 222222 777 2222222 888 66 5 0 66 0000 11 777 000000000000000000000000000 5 55 66 666 4 4 66 4 44444444444444 5 22 4 2 4 2 4 55 333333 3 5 5555555555555555555555555555555555 33333333 0 3
lowQualScore : ... . ... . .. .... . . ..... . .................................. .. . .............. . .......... . .. . ..... . . ... . . . . . ....................... ....... . ...... .................................. . ..... . . ........... .. . .. ... . ..... . ... .... .. . .. ...... ... ....... ... .. . . .. .... .. ... ........................... . .. .. ... . . .. . .............. . .. . . . . . .. ...... . . .................................. ........ . .
lowQualScore : 000 6 888 0 00 7777 6 5 66666 8 2222222222222222222222222222222222 00 6 44444444444444 6 9999999999 6 66 0 77777 5 7 999 7 3 7 9 9 22222222222222222222222 7777777 7 777777 5555555555555555555555555555555555 4 00000 9 9 00000000000 22 1 22 555 1 99999 4 333 1111 11 9 11 888888 000 6666666 888 99 0 2 99 6666 99 777 777777777777777777777777777 0 00 33 222 4 4 11 4 44444444444444 0 66 4 9 4 0 0 55 444444 8 7 6666666666666666666666666666666666 22222222 1 6
consensus : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Reference ( family-947 ) : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
gi|1 : ---AAATT---GTTTA-GTTTCTAAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAG-C--AG-GGTT-T--TTTATTTTTGTTTT---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCACT-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGT----------AT-----------A----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TCGC--TTCA---ATT-AC-----TTACTA-T-AAATG--AATACTA--TTATTCTTAAA-ATTTG--CAC------AC--AT--G----AG---TAT--G--ATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATC--AAAC-CTTCC--GATA-A--GTTGTAC-T--------------AAAA-A-GTCTA-TAACA-TAAAAGTTACCTCATTTACATAAAT-CAATAT-----AAAATAAATATTGG--GGA---AAAAAA-------TT------A-GATGCG--------AAACCTTTTGAACA-GATGTGGTGGTGCCCGAGAAACTAAAG
gi|10 : gatacTT--GAAA----AA-GAGATGAGGCAGGT--AG-GGTT-T--TT----------------------G-----TT--TTGTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTAAG-T-TT-C-C-TTATTCA-T-GCACACG-AGTT-A--------------TAA-------G-CA------ATGGGATACATCATCAT----------AA----------TTATTTTTA-----T-T-T-----TC---ATAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|11 : AAA---AAATTAATGTTTA-GTTTCTCAAGCAC---TTT-TTTTTGGAAAATTTAA-GAGGTTAG---GGTTAAG-GG------------------------------G-----TT--TTTTTTAAC--------------TTGGCTGTAAT-AATCTGTAATCTAA-GTTATCTT-------------------TT-AT-CTTT-C-C-TTTTTCA-T-GCACATG-AGTTAATATAT--AG-----TTA-------A-CA------AGGGG----------AT----------AA----------TT
gi|12 : ggctacT--TTCTTT-G---------------TTGACTGTAGA-A----------TGA-GTTACGTTTTCTTTCTTA-----TG-------------------------T-GCATT-G-AAT--ATATAG---------------------CA------ATGAA----------AT-------------------------TTTTA----------------TA---A--AG--AA-TAAC--ATGAC--ATT-ATAT---TTACTA-TTAAGTG--TATACT----TATTCTTTAACACTTG--CAC------ATAAAT--G----AGTAATAT--G-CACTCA--AT----TAT--TATTTG
gi|13 : --------------TTT-ATT--AAAG-GGTTT--GG-A-A--AATTTAC-T--------------TAAA-A-TTC-A-TCACA-TAACAGTTACTTCATC-----AAA--CA--AT-----TACATG--TATT-G--GAA---AAAAAAAAC----TT------C-CATGGA--------AAACCTTTTCAACA-GATGCAGGGGTGCCTGGGAAACT
gi|14 : atacttacaatTTTTT-AC--------------TTGACTGTAAT-A----------TGAAGTTATCTTTCCTTTCTGA-----TGA-TT-AT-CTTT-C-C-TTTTTCA-T-GCACACG-AGTA-ATA------------TAA-------G-CA------ATGGGATAAATCACCAT----------AA----------TTATTTTTATTTTTT-T-T-----C----ACAAA--AA-TAGC--TTCA---ATTCAC-----TTACTA-gttgattaatattgtttggc
gi|15 : --AAAC-CTTCG--GA-A-A--GTTTTAC-C--------------AAAA-A--------AATC-TAAGAGTTACCTCCTTTACAAAAATACA--A------AAAATAAA-ACT-T--GAA---AATAAA-------TT------T-CATATG--------GTACCTTTTCCACG-GATGCAGCAGTGCCTGAGAAAC-AAAG
gi|16 : TA-TAA-A-GAAGAGTTACCTCATTTACATAAAT-CA--AT------AAATAAGTAAT-G--GG---------ATTTTTTTTT------A-GATGCG--------ATACCTTTTGAATA-CATGCGGCGGTGCCTGAGAAATTAAAGaaggtttttttt
gi|17 : ACA-G-AGTT-ATATAG--AG-----CAA-------G-CATGCGTAATGGA----------GT----------AA----------TCATTTTAA-----T-T-T-----TC---ACAAA--AA-TAGC--TTCA---ATT-AC-----TGACTA-TAAAGTA--AATACTA--TTATTCTTAAACATTTG--CAC------AC--Aattattt
gi|18 : GCAC---TTT-TTTT--GAAA-------GAGATGAGGCAGGC--AG-GGTT-T--TTT----------TTTGGTTTTTTT-----TT--CTTTTT-AC--------------TTGGTTGAAGT-A----------TGA-TTTATCTTTCCTTTTTGA-----TGAGTT-AT-C-TT-T-C-
gi|19 : A-----TGAGTT-AT-C-TTTC-C-TTTTTCA-T-GCACACG-AGTA-ATATA------------A-------G-CA------ATGGG----------AT----------AAATCACCATAATTATTTTTA-----T-T-TTTTTTCA----CAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|2 : T-TGTT--TAAA----AA-GAGATGAGGCAG-T--AG-GTTA-G--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTGAT-A----------CGT-GTTATC----------G-----------T-AC-C-TT-T-C-TTTTTCA-T-GTTCATG-ATTT-ATATAGATAGAGTATTAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTTA-----T-T-T-----TA---ACAAA--AA-GAGC--TTCAATCATT-AC-----TTACTATT-AAGTG--AATACTACTTCATTC-TAAACATTTGCACAC------AC--AT--G----TG---TAT--G-CATCAATCAG----TATGGTATTTGATAATATCAACTTAAA--------------ATT-ATTA-AAAT-CTTTCAAGA-A-AACGTGTTAC-TA-------------AAAA-A-GTCTA-TAACA-TGAGAGTTTCCTCATAGACGTAAGT-CA--AC-----AAAG-AAATATT-GAAGAA---AAAAAA-------AT------AGGATGTG--------GCACCTTTAAAACT-GATGTGGAGGTGCCTAAGATACTAAAG
gi|2 : AAA---AAATTAATCTTTA-GTATCTTAGGCAC---CTattaattttttgt
gi|20 : ttgtttaaaaagagatgaggcagtaggttagttttgttttttgttttttttacttggctgtgatacgtgttatcgtacctttctttttcatgttcatgatttatatagatagagtattaagcaatgggataattatttttattttaacaaaaagagcttcaatcattacttactattaagtgaatactacttcattctaaacatttgcacacacatgtgtatgcatcaatcagtatggtatttgataatatcaacttaaaattattaaaatctttcaagaaaacgtgttactaaaaaagtctataacatgagagtttcctcatagacgtaagtcaacaaagaaatattgaagaaaaaaaaataggatgtggcacctttaaaactgatgtggT-AT-C-TT-TGC-CTTTACA-T-GCACATG-AGTC-ATA--------------A-------G-CA------ATGGA----------ATGCATCATCATAA----------TTGTTTTAAA----T-T-T-----CA----CAAA--AT-TAGC--TTCA---ATT-AC-----TTACTA-gt
gi|21 : AAAACATAATTTAATGTTTATGTTTCTCGGGCAC---TTTCTTTT--GCAA----AA-AAGGTCATGCAAAT--AGTGATTAT--TCT----------T---
gi|22 : ggctATATAT-GA--AT-----ACAGTAAA-ATT-G-------------A-------TC------A--ATGCA--------GCAGTGTTTGA-CATGATGTGGCGGTGCCTGAGAAATAAAAGaaacatcttaatac
gi|22 : aAAAA---AAATTAATCTTTT-ATTTCTCAGGCAC---attaattttttttgc
gi|23 : aatatatgaatacagtaaaattgatcaatgcagcagtgtttgacatgatgtggcgAAA---AAGTTAATGTTTA-GCTTGTCAGGCCC--------TTT--AAAA----AATAAGATGAAGGAAGC---C-GGTT-TAATTT----------T---GTTGTTTG-----TT--TTTTtgc
gi|24 : ------A-GATGCG--------GTACCTTTAGAACA-GATGCGGCGG----TGAGAAACTAAAGac
gi|25 : gaac-----TGAGTT-------T-C-C-TTTTTCA-T-GCACATG-AGTT-A--------------TAA-------G-CA------AT-GG----------ATA---------AA----------TCATCTTAA-----T-T-attaatttttatttg
gi|26 : TAATGTATA-ATTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGat
gi|3 : GAAAT---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT--------ACA----AA-AAGATGAGACAGGC--AG-G---------T----------T---GTTTGTTG-----TTGTTTTTTT-AC--------------TTTGCTGTAATTA----------CGA-GTTTTCTATGTTGAGTGAAGGATTGAGCT-ATAT-TT-C-C-TTTCTCC-T-GTA--------T-GCAT-----G-----TAA-------G-CA------ATGGG-----------------------A----------TTA---TAA-----T-T-T-----TC---ACAAA--TA-AA-------A---ACT-AC-----T---------AG---------TA--TTATTCTTCAATATTTG--CACACTCGTAC--AT--T----AG---TAT--G-CATCAA--AT----TAT--TATT--ATA----------AAAAATATACTAAGAATTTT-ATCA-AAAT-CTTTG--GA-A-A--GTTTTAC-CCCCACCCCCCCAAAAAAA-A-ATCTA-TAAGA-TAAGAGTTACCCCATTTACATAAAT-AA--ATAAACAAAAATAGATTTT----------AAAAAA-------TC--------TATGCG--------GTACCTTTTCCACG-GATGCGGCGGTGCCTGAGAAACcaggctgtttt
gi|4 : aTT-AT-C-TT-A-C-TTGCT-----GTACA-T---TT-AC-TAG--AA-----TAA-------AACA------ATGGA----------TT----------------------TTGTTTTTA-----TAT-T-----CA---AAAAATAAA-TGGC--TCTC---ATT-AC-----T-ACTAGT-AAGTGCAAATA--A--CTGTTCT-AAACAATTG--CAC------A-------G----AA---TAT--GATATTTG--ATAGAAGAT--T-TTCGA-A----------GAA--------------GTT-GTTGAAAAC-CTTCA--GA-A-A--GTTTTATAT--------------CAGA-A--TCTAATGACAACAAACTTTACCTTATTTACATACAT-AA--AC-----AAA-CAAA-ATT-G--GGGTGGGAAAAA-------CC------A---TGTG---------TACCTT--AAACT-GATGCAGAGGTGCCTGAAAAACTA
gi|5 : tGATGAGGGAGGC--AG-G-TT-T--TGG----------A---GTTTTGTGGGAGGTT--TTTTGT-AC--------------TTACCGGTA------------------GCTATGGT---------A-----CGAGTT-AT-CGTT-C-C-TTT----------------GT--ATGTTG--AC-----TGA-------A-CA------ATGAG----------TT----------A------------TGTTTTGT-----T-TAT-----CATGCAGAGA--AA-AAGCAATAGG---ATT-ATATGTGTTA-TA-A-AAGTG--CATAC----------------ACTTG--CAC------AT--AT--G----AG---CAT--G-CATCCA--AT----CAT--TATTTA--A----------AAA--------------TTT-AAC--AAAA-CCTTC--GA-ATA--GTTTTAC-tctgattagggtttttttg
gi|6 : aaataattatcaatagtttagcatgcaaaataaatcaaatgttTCAA-----T-T-T-----TC---ACAAA--AAATAGC--TTCA---ATT-AC-----TTACTA-A-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--ATACG----AG---TAT--G-CATTAA--AC----TAT--TATTTGATA----------GAAATATACTTCAAAT-TTT-ATT--AAAC-CTTCC--GA-A-A--ATGTTAC-T--------------AAAA-AAGTCTA-TAACA-TAACAGTTACCTCATTTACATAAAT-CA--AT-----AAC-TAAATAT-------------AAAA-------TTTTTTTTA-GATGCG--------GTACCTTTTGAACA-AATGCGGCGGTGCCTGAGAAACTAAA
gi|6 : AAAA---AAATT----TTTA-GTTTCTCAGGCAC---aatttttttt
gi|7 : tcaattttcacaaaaaatagcttcaattacttactaaaagtgaatactattattcttaaacatttgcacacatacgagtatgcattaaactattatttgatagaaatatacttcaaattttattaaaccttccgaaaatgttactaaaaaagtctataacataacagttacctcatttacataaatcaataactaaatataaaattttttttagatgcggtaccttttgaacaaatgcggcgTTTTAC-----T-T-T-----CA---CCAAA--A--TAGT--TTCA---ATT-AC-----TTA-------AAT-----TACTA--TTATTCTTAAATATTTG--CAC------AT--AT--ATATAAG---TATATG-CATTAA--AC----TATA-TACTT---A----------GAA--------------TTTTATT--AAAAACTTCC--TA-A-A--GTTTTAC-T--------------AAAAAA-GTCTA-TAAGA-TAAGAGTTAACTCATGAACAAAAAT-CG--AT------AGATAATTTTT-T--TTT---TAAAAA-------TT------A-GATGCGTAATTTAAGTACATTTGGAACA-GATGt
gi|8 : tcctttttcattgcacaggagAAAA---AAATTAATGTTCA-GTTTCTCTGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--A---GTT-T--TT----------------------------TT--TTTTAT-AC---------------TGGTTGTAAT-A----------CGA-GTTATCTTTCCTTTTTGA-----TGA--T-AT-T-TT-CTC-CTTTTCA-T-TCACAGG-AGTT-ATATAG--AG-----TAAACATTGGG-TA------ATGGG----------AT----------AA----------TTATaaactaaagataag
gi|9 : gctaAAAA---AAAATAATGTTTA-GTTTCATGGGCACCTTTTT-TTTT--GAAA----A---------GGCAGGT-----GGTT-T------------------------------------TTTTTT-GGGAAGGGGGGGGGGGTTGGCTGTAAT-A----------TGA-GTAATCTTTCCTTTCTGA-----TGAGTT-AT-A-TT-C-CCTTTTTCA-TTGCACA-GGAGTT-GTATAG--AG-----TAA-------G-CT------ATGGG----------AT----------AG----------Tc
Alignments
lowQualScore : 5555555555555555555555555555555555 22222222222222 1111111111 22222222222222222222222 4444444444444444444444444444444444 11111 11111111111 11111 111 111111 1111111 1111 11 666666666666666666666666666 11 33333333333333 11 111111 4444444444444444444444444444444444 11111111
lowQualScore : 777 3 555 4 55 7777 3 0 77777 2 6666666666666666666666666666666666 55 3 11111111111111 3 5555555555 3 22 2 77777 3 2 888 2 5 2 2 2 44444444444444444444444 8888888 2 777777 1111111111111111111111111111111111 1 00000 2 2 33333333333 44 3 44 888 3 11111 0 888 8888 66 1 66 222222 777 2222222 888 66 5 0 66 0000 11 777 000000000000000000000000000 5 55 66 666 4 4 66 4 44444444444444 5 22 4 2 4 2 4 55 333333 3 5 5555555555555555555555555555555555 33333333 0 3
lowQualScore : ... . ... . .. .... . . ..... . .................................. .. . .............. . .......... . .. . ..... . . ... . . . . . ....................... ....... . ...... .................................. . ..... . . ........... .. . .. ... . ..... . ... .... .. . .. ...... ... ....... ... .. . . .. .... .. ... ........................... . .. .. ... . . .. . .............. . .. . . . . . .. ...... . . .................................. ........ . .
lowQualScore : 000 6 888 0 00 7777 6 5 66666 8 2222222222222222222222222222222222 00 6 44444444444444 6 9999999999 6 66 0 77777 5 7 999 7 3 7 9 9 22222222222222222222222 7777777 7 777777 5555555555555555555555555555555555 4 00000 9 9 00000000000 22 1 22 555 1 99999 4 333 1111 11 9 11 888888 000 6666666 888 99 0 2 99 6666 99 777 777777777777777777777777777 0 00 33 222 4 4 11 4 44444444444444 0 66 4 9 4 0 0 55 444444 8 7 6666666666666666666666666666666666 22222222 1 6
consensus : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Reference ( family-947 ) : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
gi|1 : ---AAATT---GTTTA-GTTTCTAAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAG-C--AG-GGTT-T--TTTATTTTTGTTTT---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCACT-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGT----------AT-----------A----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TCGC--TTCA---ATT-AC-----TTACTA-T-AAATG--AATACTA--TTATTCTTAAA-ATTTG--CAC------AC--AT--G----AG---TAT--G--ATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATC--AAAC-CTTCC--GATA-A--GTTGTAC-T--------------AAAA-A-GTCTA-TAACA-TAAAAGTTACCTCATTTACATAAAT-CAATAT-----AAAATAAATATTGG--GGA---AAAAAA-------TT------A-GATGCG--------AAACCTTTTGAACA-GATGTGGTGGTGCCCGAGAAACTAAAG
gi|10 : gatacTT--GAAA----AA-GAGATGAGGCAGGT--AG-GGTT-T--TT----------------------G-----TT--TTGTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTAAG-T-TT-C-C-TTATTCA-T-GCACACG-AGTT-A--------------TAA-------G-CA------ATGGGATACATCATCAT----------AA----------TTATTTTTA-----T-T-T-----TC---ATAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|11 : AAA---AAATTAATGTTTA-GTTTCTCAAGCAC---TTT-TTTTTGGAAAATTTAA-GAGGTTAG---GGTTAAG-GG------------------------------G-----TT--TTTTTTAAC--------------TTGGCTGTAAT-AATCTGTAATCTAA-GTTATCTT-------------------TT-AT-CTTT-C-C-TTTTTCA-T-GCACATG-AGTTAATATAT--AG-----TTA-------A-CA------AGGGG----------AT----------AA----------TT
gi|12 : ggctacT--TTCTTT-G---------------TTGACTGTAGA-A----------TGA-GTTACGTTTTCTTTCTTA-----TG-------------------------T-GCATT-G-AAT--ATATAG---------------------CA------ATGAA----------AT-------------------------TTTTA----------------TA---A--AG--AA-TAAC--ATGAC--ATT-ATAT---TTACTA-TTAAGTG--TATACT----TATTCTTTAACACTTG--CAC------ATAAAT--G----AGTAATAT--G-CACTCA--AT----TAT--TATTTG
gi|13 : --------------TTT-ATT--AAAG-GGTTT--GG-A-A--AATTTAC-T--------------TAAA-A-TTC-A-TCACA-TAACAGTTACTTCATC-----AAA--CA--AT-----TACATG--TATT-G--GAA---AAAAAAAAC----TT------C-CATGGA--------AAACCTTTTCAACA-GATGCAGGGGTGCCTGGGAAACT
gi|14 : atacttacaatTTTTT-AC--------------TTGACTGTAAT-A----------TGAAGTTATCTTTCCTTTCTGA-----TGA-TT-AT-CTTT-C-C-TTTTTCA-T-GCACACG-AGTA-ATA------------TAA-------G-CA------ATGGGATAAATCACCAT----------AA----------TTATTTTTATTTTTT-T-T-----C----ACAAA--AA-TAGC--TTCA---ATTCAC-----TTACTA-gttgattaatattgtttggc
gi|15 : --AAAC-CTTCG--GA-A-A--GTTTTAC-C--------------AAAA-A--------AATC-TAAGAGTTACCTCCTTTACAAAAATACA--A------AAAATAAA-ACT-T--GAA---AATAAA-------TT------T-CATATG--------GTACCTTTTCCACG-GATGCAGCAGTGCCTGAGAAAC-AAAG
gi|16 : TA-TAA-A-GAAGAGTTACCTCATTTACATAAAT-CA--AT------AAATAAGTAAT-G--GG---------ATTTTTTTTT------A-GATGCG--------ATACCTTTTGAATA-CATGCGGCGGTGCCTGAGAAATTAAAGaaggtttttttt
gi|17 : ACA-G-AGTT-ATATAG--AG-----CAA-------G-CATGCGTAATGGA----------GT----------AA----------TCATTTTAA-----T-T-T-----TC---ACAAA--AA-TAGC--TTCA---ATT-AC-----TGACTA-TAAAGTA--AATACTA--TTATTCTTAAACATTTG--CAC------AC--Aattattt
gi|18 : GCAC---TTT-TTTT--GAAA-------GAGATGAGGCAGGC--AG-GGTT-T--TTT----------TTTGGTTTTTTT-----TT--CTTTTT-AC--------------TTGGTTGAAGT-A----------TGA-TTTATCTTTCCTTTTTGA-----TGAGTT-AT-C-TT-T-C-
gi|19 : A-----TGAGTT-AT-C-TTTC-C-TTTTTCA-T-GCACACG-AGTA-ATATA------------A-------G-CA------ATGGG----------AT----------AAATCACCATAATTATTTTTA-----T-T-TTTTTTCA----CAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|2 : T-TGTT--TAAA----AA-GAGATGAGGCAG-T--AG-GTTA-G--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTGAT-A----------CGT-GTTATC----------G-----------T-AC-C-TT-T-C-TTTTTCA-T-GTTCATG-ATTT-ATATAGATAGAGTATTAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTTA-----T-T-T-----TA---ACAAA--AA-GAGC--TTCAATCATT-AC-----TTACTATT-AAGTG--AATACTACTTCATTC-TAAACATTTGCACAC------AC--AT--G----TG---TAT--G-CATCAATCAG----TATGGTATTTGATAATATCAACTTAAA--------------ATT-ATTA-AAAT-CTTTCAAGA-A-AACGTGTTAC-TA-------------AAAA-A-GTCTA-TAACA-TGAGAGTTTCCTCATAGACGTAAGT-CA--AC-----AAAG-AAATATT-GAAGAA---AAAAAA-------AT------AGGATGTG--------GCACCTTTAAAACT-GATGTGGAGGTGCCTAAGATACTAAAG
gi|2 : AAA---AAATTAATCTTTA-GTATCTTAGGCAC---CTattaattttttgt
gi|20 : ttgtttaaaaagagatgaggcagtaggttagttttgttttttgttttttttacttggctgtgatacgtgttatcgtacctttctttttcatgttcatgatttatatagatagagtattaagcaatgggataattatttttattttaacaaaaagagcttcaatcattacttactattaagtgaatactacttcattctaaacatttgcacacacatgtgtatgcatcaatcagtatggtatttgataatatcaacttaaaattattaaaatctttcaagaaaacgtgttactaaaaaagtctataacatgagagtttcctcatagacgtaagtcaacaaagaaatattgaagaaaaaaaaataggatgtggcacctttaaaactgatgtggT-AT-C-TT-TGC-CTTTACA-T-GCACATG-AGTC-ATA--------------A-------G-CA------ATGGA----------ATGCATCATCATAA----------TTGTTTTAAA----T-T-T-----CA----CAAA--AT-TAGC--TTCA---ATT-AC-----TTACTA-gt
gi|21 : AAAACATAATTTAATGTTTATGTTTCTCGGGCAC---TTTCTTTT--GCAA----AA-AAGGTCATGCAAAT--AGTGATTAT--TCT----------T---
gi|22 : ggctATATAT-GA--AT-----ACAGTAAA-ATT-G-------------A-------TC------A--ATGCA--------GCAGTGTTTGA-CATGATGTGGCGGTGCCTGAGAAATAAAAGaaacatcttaatac
gi|22 : aAAAA---AAATTAATCTTTT-ATTTCTCAGGCAC---attaattttttttgc
gi|23 : aatatatgaatacagtaaaattgatcaatgcagcagtgtttgacatgatgtggcgAAA---AAGTTAATGTTTA-GCTTGTCAGGCCC--------TTT--AAAA----AATAAGATGAAGGAAGC---C-GGTT-TAATTT----------T---GTTGTTTG-----TT--TTTTtgc
gi|24 : ------A-GATGCG--------GTACCTTTAGAACA-GATGCGGCGG----TGAGAAACTAAAGac
gi|25 : gaac-----TGAGTT-------T-C-C-TTTTTCA-T-GCACATG-AGTT-A--------------TAA-------G-CA------AT-GG----------ATA---------AA----------TCATCTTAA-----T-T-attaatttttatttg
gi|26 : TAATGTATA-ATTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGat
gi|3 : GAAAT---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT--------ACA----AA-AAGATGAGACAGGC--AG-G---------T----------T---GTTTGTTG-----TTGTTTTTTT-AC--------------TTTGCTGTAATTA----------CGA-GTTTTCTATGTTGAGTGAAGGATTGAGCT-ATAT-TT-C-C-TTTCTCC-T-GTA--------T-GCAT-----G-----TAA-------G-CA------ATGGG-----------------------A----------TTA---TAA-----T-T-T-----TC---ACAAA--TA-AA-------A---ACT-AC-----T---------AG---------TA--TTATTCTTCAATATTTG--CACACTCGTAC--AT--T----AG---TAT--G-CATCAA--AT----TAT--TATT--ATA----------AAAAATATACTAAGAATTTT-ATCA-AAAT-CTTTG--GA-A-A--GTTTTAC-CCCCACCCCCCCAAAAAAA-A-ATCTA-TAAGA-TAAGAGTTACCCCATTTACATAAAT-AA--ATAAACAAAAATAGATTTT----------AAAAAA-------TC--------TATGCG--------GTACCTTTTCCACG-GATGCGGCGGTGCCTGAGAAACcaggctgtttt
gi|4 : aTT-AT-C-TT-A-C-TTGCT-----GTACA-T---TT-AC-TAG--AA-----TAA-------AACA------ATGGA----------TT----------------------TTGTTTTTA-----TAT-T-----CA---AAAAATAAA-TGGC--TCTC---ATT-AC-----T-ACTAGT-AAGTGCAAATA--A--CTGTTCT-AAACAATTG--CAC------A-------G----AA---TAT--GATATTTG--ATAGAAGAT--T-TTCGA-A----------GAA--------------GTT-GTTGAAAAC-CTTCA--GA-A-A--GTTTTATAT--------------CAGA-A--TCTAATGACAACAAACTTTACCTTATTTACATACAT-AA--AC-----AAA-CAAA-ATT-G--GGGTGGGAAAAA-------CC------A---TGTG---------TACCTT--AAACT-GATGCAGAGGTGCCTGAAAAACTA
gi|5 : tGATGAGGGAGGC--AG-G-TT-T--TGG----------A---GTTTTGTGGGAGGTT--TTTTGT-AC--------------TTACCGGTA------------------GCTATGGT---------A-----CGAGTT-AT-CGTT-C-C-TTT----------------GT--ATGTTG--AC-----TGA-------A-CA------ATGAG----------TT----------A------------TGTTTTGT-----T-TAT-----CATGCAGAGA--AA-AAGCAATAGG---ATT-ATATGTGTTA-TA-A-AAGTG--CATAC----------------ACTTG--CAC------AT--AT--G----AG---CAT--G-CATCCA--AT----CAT--TATTTA--A----------AAA--------------TTT-AAC--AAAA-CCTTC--GA-ATA--GTTTTAC-tctgattagggtttttttg
gi|6 : aaataattatcaatagtttagcatgcaaaataaatcaaatgttTCAA-----T-T-T-----TC---ACAAA--AAATAGC--TTCA---ATT-AC-----TTACTA-A-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--ATACG----AG---TAT--G-CATTAA--AC----TAT--TATTTGATA----------GAAATATACTTCAAAT-TTT-ATT--AAAC-CTTCC--GA-A-A--ATGTTAC-T--------------AAAA-AAGTCTA-TAACA-TAACAGTTACCTCATTTACATAAAT-CA--AT-----AAC-TAAATAT-------------AAAA-------TTTTTTTTA-GATGCG--------GTACCTTTTGAACA-AATGCGGCGGTGCCTGAGAAACTAAA
gi|6 : AAAA---AAATT----TTTA-GTTTCTCAGGCAC---aatttttttt
gi|7 : tcaattttcacaaaaaatagcttcaattacttactaaaagtgaatactattattcttaaacatttgcacacatacgagtatgcattaaactattatttgatagaaatatacttcaaattttattaaaccttccgaaaatgttactaaaaaagtctataacataacagttacctcatttacataaatcaataactaaatataaaattttttttagatgcggtaccttttgaacaaatgcggcgTTTTAC-----T-T-T-----CA---CCAAA--A--TAGT--TTCA---ATT-AC-----TTA-------AAT-----TACTA--TTATTCTTAAATATTTG--CAC------AT--AT--ATATAAG---TATATG-CATTAA--AC----TATA-TACTT---A----------GAA--------------TTTTATT--AAAAACTTCC--TA-A-A--GTTTTAC-T--------------AAAAAA-GTCTA-TAAGA-TAAGAGTTAACTCATGAACAAAAAT-CG--AT------AGATAATTTTT-T--TTT---TAAAAA-------TT------A-GATGCGTAATTTAAGTACATTTGGAACA-GATGt
gi|8 : tcctttttcattgcacaggagAAAA---AAATTAATGTTCA-GTTTCTCTGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--A---GTT-T--TT----------------------------TT--TTTTAT-AC---------------TGGTTGTAAT-A----------CGA-GTTATCTTTCCTTTTTGA-----TGA--T-AT-T-TT-CTC-CTTTTCA-T-TCACAGG-AGTT-ATATAG--AG-----TAAACATTGGG-TA------ATGGG----------AT----------AA----------TTATaaactaaagataag
gi|9 : gctaAAAA---AAAATAATGTTTA-GTTTCATGGGCACCTTTTT-TTTT--GAAA----A---------GGCAGGT-----GGTT-T------------------------------------TTTTTT-GGGAAGGGGGGGGGGGTTGGCTGTAAT-A----------TGA-GTAATCTTTCCTTTCTGA-----TGAGTT-AT-A-TT-C-CCTTTTTCA-TTGCACA-GGAGTT-GTATAG--AG-----TAA-------G-CT------ATGGG----------AT----------AG----------Tc
blockSeqs : CAT T CTT C TG ATTT T TAAG G TTGGAGTTTTGTGGGAGG GT A GAAGGGGGGGGGGG T ATCTGTAATC A TC C AGGAT G A CT T G C . T TGATTTATATAGATAGAGTAT ACATTGG A TGCGTA ATACATCATCATAA T TTTTT A A TTTTTCA TA A AA ATC C ATGTG TT GCAA CT C CA ACTCGT TAA ATATA TAA AT A TC AGAA GG GAT AAAAATATACTAAGAAT T GA AA CAA . T AC A CCCACCCCCCCAAA A AG A C A T A . AAACAA A T GGAAAAAAAAAACTTCC TAATTTAA T
blockSeqs : . . . . . . . AGT G TTTTTTTGGTTTTTTT . . . . . . TT C . G . CT . T . . . TGAGTTAATATATAG . . . ATAAATCACCATAA A A . . CATGCA . . . C . AT TA GT . C . . C ACG . . . . . A GAT GAAATATACTTCAAAT . A G T . . . . A . T . T . T . . T A T GAAGAAAAAAAAATAGG . .
blockSeqs : . . . . . . . AG G TAATTTTGTTGTTTG . . . . . . TC C . G . AT . . . . . GGAGTTATATAGAG . . . ATAAATCACCATAA T . . . TCA . . . . . . TT AA . C . . C G . . . . . . AT ATATCAACTTAAA . A C G . . . . . . G . C . G . . A A T GGGGTGGGAAAAACCA . .
blockSeqs : . . . . . . . AG T GTTTTGTTTTTTG . . . . . . TC T . G . CG . . . . . GGAGTTGTATAGAG . . . ATGCATCATCATAA A . . . TAA . . . . . . GT GA . T . . C G . . . . . . GA GAA . . T G . . . . . . A . G . T . . A G T GGGATTTTTTTTTAG . .
blockSeqs : . . . . . . . AG A TTGTTTGTTG . . . . . . TG G . G . T . . . . . GAGTTATATAGAG . . . ATAAA T . . . TCA . . . . . . A GC . C . . T T . . . . . . A AAA . . T A . . . . . . G . C . T . . A G T TGAAAATAAATTTC . .
blockSeqs : . . . . . . . AG G TTTG . . . . . . TC T . G . C . . . . . CGAGTAATATA . . . ATAA T . . . TAA . . . . . . A GA . C . . C G . . . . . . . GAA . . C C . . . . . . . . C . T . . A A T AAAATTTTTTTTAG . .
blockSeqs : . . . . . . . AG G TTT . . . . . . TC C . G . C . . . . . GAATATATAG . . . GTAA A . . . TCA . . . . . . . . . T . . T G . . . . . . . . A C . . . . . . . . G . A . . A A . TTTTTAAAAATTAG . .
blockSeqs : . . . . . . . C G G . . . . . . . . . . . C . . . . . TTTACTAGAA . . . ATAA A . . . CAA . . . . . . . . . . . . . . C C . . . . . . . . . . . . . AAAAAATCT . .
blockSeqs : . . . . . . . A . T . . . . . . . . . . . C . . . . . GTATGTTGAC . . . ATAA A . . . TCA . . . . . . . . . . . GATCA . .
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . CGAGTAATA . . . ATAG T . . . CAC . . . . . . . .
blockSeqs : . . . . T . . . . . TGAGTCATA . . . TTA G . . . CA . . . . . .
blockSeqs : . . . A . . . . . CGAGTTA . . . AT A . . . CA . . . . . .
blockSeqs : . . . . . . . TGAGTTA . . . TT A . . .
blockSeqs : . . . . . TGCATG . . . A
blockSeqCons : TTGTTTTTTG************************ CGAGTTATATAGAG********* ATAA****************************** A** GAT ** AAAAANTCN*************************
originalCons : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTT-T--TTT----------T---GTTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACA-G-AGTT-ATATAG--AG-----TAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-T-AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATT-G--GGA---AAAAAA-------TT------A-GATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
finalCons : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AG-GGTTTTGTTTTTTG------------------------TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-C-TTTTTCA-T-GCACACGAGTTATATAGAG---------TAA-------G-CA------ATGGGATAA------------------------------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTAA--AAGTG--AATACTA--TTATTCTTAAACATTTG--CAC------AC--AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAAC-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCATTTACATAAAT-CA--AT-----AAAATAAATATTAAAAANTCN-------------------------ATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Alignments
lowQualScore : 5555555555555555555555555555555555555555 22222222222222 1111111111 111 11 2222222222222222222222 3333333333333333333333333333333333 11111 11111111111 11111 222 2222222222222222 1111 11 666666666666666666666666666 11 111 33333333333333 11 1111111 66666666666666666666666666666666666666666666666 11111111
lowQualScore : 777 3 555 4 55 7777 3 55 9999999999999999999999999999999999999999 55 4 33333333333333 4 7777777777 4 3 0 77777 1 2 222 666 8 11 55 0 0000000000000000000000 2 777777 9999999999999999999999999999999999 1 00000 2 2 33333333333 44 3 44 888 3 11111 000 666 66 1 66 0000000000000000 888 66 5 0 66 0000 11 777 000000000000000000000000000 5 00 000 666 4 4 66 4 44444444444444 5 22 4 2 4 4444444 66666 55555555555555555555555555555555555555555555555 33333333 0 3
lowQualScore : ... . ... . .. .... . .. ........................................ .. . .............. . .......... . . . ..... . . ... ... . .. .. . ...................... . ...... .................................. . ..... . . ........... .. . .. ... . ..... ... ... .. . .. ................ ... .. . . .. .... .. ... ........................... . .. ... ... . . .. . .............. . .. . . . ....... ..... ............................................... ........ . .
lowQualScore : 000 6 888 0 00 7777 6 00 5555555555555555555555555555555555555555 55 0 55555555555555 0 5555555555 0 4 7 77777 5 7 666 111 0 00 33 1 0000000000000000000000 7 777777 9999999999999999999999999999999999 4 00000 9 9 00000000000 22 1 22 555 1 99999 222 222 11 9 11 1111111111111111 888 99 0 2 99 6666 99 777 777777777777777777777777777 0 66 888 222 4 4 11 4 44444444444444 0 66 4 9 4 4444444 99999 99999999999999999999999999999999999999999999999 22222222 1 6
consensus : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AGG-------------GTTTT------G---TTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-CTTTTTCA-TGCACAC-GAGTT-ATATAGA----GTA---A-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-N-AAGTG--AATACTA--TTATTCTTAAACATTTG--CACAC------AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAA-C-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCAT-------TTACATAAAT-CA--ATAAA-----ATAA-----ATATT--------AAAAAT----T-CN------ATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
Reference ( family-947 ) : GAAAA---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--AGG-------------GTTTT------G---TTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-CTTTTTCA-TGCACAC-GAGTT-ATATAGA----GTA---A-------G-CA------ATGGG----------AT----------AA----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TAGC--TTCA---ATT-AC-----TTACTA-A-AAGTG--AATACTA--TTATTCTTAAACATTTG--CACAC------AT--G----AG---TAT--G-CATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATT--AAA-C-CTTCC--GA-A-A--GTTTTAC-T--------------AAAA-A-GTCTA-TAACA-TAAGAGTTACCTCAT-------TTACATAAAT-CA--ATAAA-----ATAA-----ATATT--------AAAAAN----T-CN------ATGCG--------GTACCTTTTGAACA-GATGCGGCGGTGCCTGAGAAACTAAAG
gi|1 : ---AAATT---GTTTA-GTTTCTAAGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCA-GC--AGGGTTTTTTATTTTTGTTTT------G---TTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTT-AT-C-TT-C-CTTTTTCACTGCACA--GAGTT-ATATAGA----GTA---A-------G-CA------ATGGT----------AT-----------A----------TTATTTTAA-----T-T-T-----CA---ACAAA--AA-TCGC--TTCA---ATT-AC-----TTACTA-T-AAATG--AATACTA--TTATTCTTAAA-ATTTG--CACAC------AT--G----AG---TAT--G--ATTAA--AT----TAT--TATTTGATA----------GAA--------------TTT-ATC--AAA-C-CTTCC--GATA-A--GTTGTAC-T--------------AAAA-A-GTCTA-TAACA-TAAAAGTTACCTCAT-------TTACATAAAT-CAATATAAA-----ATAA-----ATATTGGGGAA--AAAAAT----T-AG------ATGCG--------AAACCTTTTGAACA-GATGTGGTGGTGCCCGAGAAACTAAAG
gi|10 : gatacTT--GAAA----AA-GAGATGAGGCAGGT--AGG-------------GTTTT---------------TG-----TT--TTGTTT-AC--------------TTGGCTGTAAT-A----------CGA-GTTATCTTTCCTTTCTGA-----TGAGTTAAG-T-TT-C-CTTATTCA-TGCACAC-GAGTT-A-----------TA---A-------G-CA------ATGGGATACATCATCAT----------AA----------TTATTTTTA-----T-T-T-----TC---ATAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|11 : AAA---AAATTAATGTTTA-GTTTCTCAAGCAC---TTT-TTTTTGGAAAATTTAA-GAGGTTAG---GGTTAAGG-------------G--------------------G-----TT--TTTTTTAAC--------------TTGGCTGTAAT-AATCTGTAATCTAA-GTTATCTT-------------------TT-AT-CTTT-C-CTTTTTCA-TGCACAT-GAGTTAATATATA----GTT---A-------A-CA------AGGGG----------AT----------AA----------TT
gi|12 : ggctacA-----TGAGTT-ACGT-TT-T-CTTTCTTA-TGTGCATTGAAT--ATATAG---------------------CA------ATGAA----------AT-------------------------TTTTA----------------TA---A--AG--AA-TAAC--ATGAC--ATT-ATAT---TTACTA-TTAAGTG--TATACT----TATTCTTTAACACTTG--CACATAA----AT--G----AGTAATAT--G-CACTCA--AT----TAT--TATTTG
gi|13 : tttctttgttgactgtaga--------------TTT-ATT--AAA-G-GGTTT--GG-A-A--AATTTAC-T--------------TAAA-A-TTC-A-TCACA-TAACAGTTACTTCATCAAACAATTACATGTAT------TGGA-----AAAA-----A------------AAAACT----T-CC------ATGGA--------AAACCTTTTCAACA-GATGCAGGGGTGCCTGGGAAACT
gi|14 : atacttacaatTTTTT-AC--------------TTGACTGTAAT-A----------TGAAGTTATCTTTCCTTTCTGA-----TGA-TT-AT-CTTT-C-CTTTTTCA-TGCACAC-GAGTA-ATA---------TA---A-------G-CA------ATGGGATAAATCACCAT----------AA----------TTATTTTTATTTTTT-T-T-----C----ACAAA--AA-TAGC--TTCA---ATTCAC-----TTACTA-gttgattaatattgtttggc
gi|15 : --AAA-C-CTTCG--GA-A-A--GTTTTAC-C--------------AAAA-A--------AATC-TAAGAGTTACCTCCT-------TTACAAAAATACA--A-AAA-----ATAA-----AACTT--------GAAAATAAATT-TC------ATATG--------GTACCTTTTCCACG-GATGCAGCAGTGCCTGAGAAAC-AAAG
gi|16 : TA-TAA-A-GAAGAGTTACCTCAT-------TTACATAAAT-CA--ATAAA------TAA-----GTAAT--------GGGATT----T-TTTTTTAGATGCG--------ATACCTTTTGAATA-CATGCGGCGGTGCCTGAGAAATTAAAGaaggtttttttt
gi|17 : ACA--GAGTT-ATATAGA----GCA---A-------G-CATGCGTAATGGA----------GT----------AA----------TCATTTTAA-----T-T-T-----TC---ACAAA--AA-TAGC--TTCA---ATT-AC-----TGACTATA-AAGTA--AATACTA--TTATTCTTAAACATTTG--CACAC------Aattattt
gi|18 : GCAC---TTT-TTTT--GAAA-------GAGATGAGGCAGGC--AGG-------------GTTTTTTTTTGG---TTTTTTT-----TT--CTTTTT-AC--------------TTGGTTGAAGT-A----------TGA-TTTATCTTTCCTTTTTGA-----TGAGTT-AT-C-TT-T-C
gi|19 : A-----TGAGTT-AT-C-TTTC-CTTTTTCA-TGCACAC-GAGTA-ATATA------------A-------G-CA------ATGGG----------AT----------AAATCACCATAATTATTTTTA-----T-T-TTTTTTCA----CAAA--AA-TAGC--TTCA---ATT-AC-----TTACT
gi|2 : T-TGTT--TAAA----AA-GAGATGAGGCAG-T--AGGTTA----------GTTTT------G---TTTTTTG-----TT--TTTTTT-AC--------------TTGGCTGTGAT-A----------CGT-GTTATCGTACCTTTCT--------------------------TTTTCA-TGTTCAT-GATTT-ATATAGATAGAGTATTAA-------G-CA------ATGGG----------AT----------AA----------TTATTTTTA-----T-T-T-----TA---ACAAA--AA-GAGC--TTCAATCATT-AC-----TTACTATT-AAGTG--AATACTACTTCATTC-TAAACATTTGCACACAC------AT--G----TG---TAT--G-CATCAATCAG----TATGGTATTTGATAATATCAACTTAAA--------------ATT-ATTA-AAA-T-CTTTCAAGA-A-AACGTGTTAC-TA-------------AAAA-A-GTCTA-TAACA-TGAGAGTTTCCTCAT-------AGACGTAAGT-CA--ACAAA-----G-AA-----ATATTGAAGAAA-AAAAAA----TAGG------ATGTG--------GCACCTTTAAAACT-GATGTGGAGGTGCCTAAGATACTAAAG
gi|2 : AAA---AAATTAATCTTTA-GTATCTTAGGCAC---CTattaattttttgt
gi|20 : ttgtttaaaaagagatgaggcagtaggttagttttgttttttgttttttttacttggctgtgatacgtgttatcgtacctttctttttcatgttcatgatttatatagatagagtattaagcaatgggataattatttttattttaacaaaaagagcttcaatcattacttactattaagtgaatactacttcattctaaacatttgcacacacatgtgtatgcatcaatcagtatggtatttgataatatcaacttaaaattattaaaatctttcaagaaaacgtgttactaaaaaagtctataacatgagagtttcctcatagacgtaagtcaacaaagaaatattgaagaaaaaaaaataggatgtggcacctttaaaactgatgtggT-AT-C-TT-TGCCTTTACA-TGCACAT-GAGTC-ATA--------------A-------G-CA------ATGGA----------ATGCATCATCATAA----------TTGTTTTAAA----T-T-T-----CA----CAAA--AT-TAGC--TTCA---ATT-AC-----TTACTA-gt
gi|21 : AAAACATAATTTAATGTTTATGTTTCTCGGGCAC---TTTCTTTT--GCAA----AA-AAGGTCATGCAAAT--AG
gi|22 : ggctATATAT-GA--ATACA-----GTAA-----A-ATT--------GA--------T-CA------ATGCA--------GCAGTGTTTGA-CATGATGTGGCGGTGCCTGAGAAATAAAAGtgattattcttaaacatcttaatac
gi|22 : aAAAA---AAATTAATCTTTT-ATTTCTCAGGCAC---attaattttttttgc
gi|23 : aatatatgaatacagtaaaattgatcaatgcagcagtgtttgacatgatgtggcgAAA---AAGTTAATGTTTA-GCTTGTCAGGCCC--------TTT--AAAA----AATAAGATGAAGGAAGC--CGGTTTA---------ATTTT------G---TTGTTTG-----TT--TTTTtgc
gi|24 : ------ATGCG--------GTACCTTTAGAACA-GATGCGGCGG----TGAGAAACTAAAGac
gi|25 : gaacag-----TGAGTT-------T-C-CTTTTTCA-TGCACAT-GAGTT-A-----------TA---A-------G-CA------AT-GG----------ATA---------AA----------TCATCTTAA-----T-T-attaatttttatttg
gi|26 : TAATGTATA-ATTTCTCAGGCAC---TTT-TTTT--GAAA----AA-GAGat
gi|3 : GAAAT---AAATTAATGTTTA-GTTTCTCAGGCAC---TTT--------ACA----AA-AAGATGAGACAGGC--AGG----------------TT------G---TTTGTTG-----TTGTTTTTTT-AC--------------TTTGCTGTAATTA----------CGA-GTTTTCTATGTTGAGTGAAGGATTGAGCT-ATAT-TT-C-CTTTCTCC-TGTATGC---------AT-------GTA---A-------G-CA------ATGGG----------AT-----------------------TAT---AA-----T-T-T-----TC---ACAAA---------------------------------TA-A-AAACT--ACTAGTA--TTATTCTTCAATATTTG--CACACTCGTACAT--T----AG---TAT--G-CATCAA--AT----TAT--TATT--ATA----------AAAAATATACTAAGAATTTT-ATC--AAAAT-CTTTG--GA-A-A--GTTTTAC-CCCCACCCCCCCAAAAAAA-A-ATCTA-TAAGA-TAAGAGTTACCCCAT-------TTACATAAAT-AA--ATAAACAAAAATAG-----ATTTT--------AAAAAA----T-CT------ATGCG--------GTACCTTTTCCACG-GATGCGGCGGTGCCTGAGAAACcaggctgtttt
gi|4 : aTT-AT-C-TT-A-CTTGCT----GTACAT----TT-AC-TAGA----ATA---A-------AACA------ATGGA----------TT----------------------TTGTTTTTA-----TAT-T-----CA---AAAAATAAA-TGGC--TCTC---ATT-AC-----T-ACTA-GTAAGTGCAAATA--A--CTGTTCT-AAACAATTG--CACA-----------G----AA---TAT--GATATTTG--ATAGAAGAT--T-TTCGA-A----------GAA--------------GTT-GTTGAAAA-C-CTTCA--GA-A-A--GTTTTATAT--------------CAGA-A--TCTAATGACAACAAACTTTACCTTAT-------TTACATACAT-AA--ACAAA------CAA-----A-ATTGGGGTGGGAAAAA-------CC------ATGTG---------TACCTT--AAACT-GATGCAGAGGTGCCTGAAAAACTA
gi|5 : tGATGAGGGAGGC--AGG--------------TTTT------GGAGTTTTGTGGGAGGTT--TTTTGT-AC--------------TTACCGGTA------------------GCTATGGT---------A-----CGAGTT-AT-CGTT-C-CTTT---------------GT--ATGTTGA----CTG---A-------A-CA------ATGAG----------TT----------A------------TGTTTTGT-----T-TAT-----CATGCAGAGA--AA-AAGCAATAGG---ATT-ATATGTGTTA-TA-A-AAGTG--CATAC----------------ACTTG--CACAT------AT--G----AG---CAT--G-CATCCA--AT----CAT--TATTTA--A----------AAA--------------TTT-AAC--AAA-A-CCTTC--GA-ATA--GTTTTAC-tctgattagggtttttttg
gi|6 : aaataattatcaatagtttagcatgcaaaataaatcaaatgttTCAA-----T-T-T-----TC---ACAAA--AAATAGC--TTCA---ATT-AC-----TTACTA-A-AAGTG--AATACTA--TTATTCTTAAACATTTG--CACAC------ATACG----AG---TAT--G-CATTAA--AC----TAT--TATTTGATA----------GAAATATACTTCAAAT-TTT-ATT--AAA-C-CTTCC--GA-A-A--ATGTTAC-T--------------AAAA-AAGTCTA-TAACA-TAACAGTTACCTCAT-------TTACATAAAT-CA--ATAAC------TAA-----ATAT----------AAAAT----T-TTTTTTAGATGCG--------GTACCTTTTGAACA-AATGCGGCGGTGCCTGAGAAACTAAA
gi|6 : AAAA---AAATT----TTTA-GTTTCTCAGGCAC---aatttttttt
gi|7 : tcaattttcacaaaaaatagcttcaattacttactaaaagtgaatactattattcttaaacatttgcacacatacgagtatgcattaaactattatttgatagaaatatacttcaaattttattaaaccttccgaaaatgttactaaaaaagtctataacataacagttacctcatttacataaatcaataactaaatataaaattttttttagatgcggtaccttttgaacaaatgcggcgT-C-CTTTTTCATTGCACAG-GAGTT-t
gi|7 : TTTTAC-----T-T-T-----CA---CCAAA--A--TAGT--TTCA---ATT-AC-----TTA-------AAT-----TACTA--TTATTCTTAAATATTTG--CACAT------AT--ATATAAG---TATATG-CATTAA--AC----TATA-TACTT---A----------GAA--------------TTTTATT--AAA-AACTTCC--TA-A-A--GTTTTAC-T--------------AAAAAA-GTCTA-TAAGA-TAAGAGTTAACTCAT-------GAACAAAAAT-CG--AT-AG-----ATAATTTTTTTTTT--------AAAAAT----T-AG------ATGCGTAATTTAAGTACATTTGGAACA-GATGttactttcaccaaaatagtttcaattacttaaattactattattcttaaatatttgcacatatatataagtatatgcattaaactatatacttagaattttattaaaaacttcctaaagttttactaaaaaagtctataagataagagttaactcatgaacaaaaatcgatagataattttttttttaaaaattagatgcgtaatttaagtacatttggaacagatgaaactaaagataag
gi|8 : tcctttttcattgcacaggagAAAA---AAATTAATGTTCA-GTTTCTCTGGCAC---TTT-TTTT--GAAA----AA-GAGATGAGGCAGGC--A--------------------------G---TTTTT-------TT--TTTTAT-AC---------------TGGTTGTAAT-A----------CGA-GTTATCTTTCCTTTTTGA-----TGA--T-AT-T-TT-CTCCTTTTCA-TTCACAG-GAGTT-ATATAGA----GTA---AACATTGGG-TA------ATGGG----------AT----------AA----------TTATaaactaaagataag
gi|9 : gctaAAAA---AAAATAATGTTTA-GTTTCATGGGCACCTTTTT-TTTT--GAAA----A---------GGCAGGT----G-------------GTTTT---------------------------TTTTT-GGGAAGGGGGGGGGGGTTGGCTGTAAT-A----------TGA-GTAATCTTTCCTTTCTGA-----TGAGTT-AT-A-TTCC-CTTTTTCATTGCACAG-GAGTT-GTATAGA----GTA---A-------G-CT------ATGGG----------AT----------AG----------Tc