lowQualScore : 22222222222222 1111111111111111111111 111111111111111111111111111
lowQualScore : 11 1 22 11111111111 1 1 44444 11 11 11 1 44 11 2222 2222222 11 11 11 1 22 33333333333333 3333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 1 1 1 1 1 1 2222222222222222222222 44444 444444444 111 555555 222 66666666 2222222222 1 1 1 2222 1 222 11 11 1 333333 11 333333 2 2 333333333333333333333333333 2 4 22 2 6666 555555 1 11 11 111 111 1 111 2222 11 1 111 222222222 111 22 11 444 1 1 1 333
lowQualScore : 3 88 5 8 8 44 6 5 6 2 88888888888 77 8 0 5 5 5 6 6 6 3 3 5 3 1 88888 8 3 8 11 6 11 11 8 8 5 0 33 22 6 3 8 8 6 6 7777 6 22 6666666 0 666 1 3 11 1 33 11 3 5 3 3 7 55 7 7 7 55555555555555 6 8888 6 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1111 0 0 0 3 0 5 3 3 6 3 4444444444444444444444 22222 7 3 111111111 999 111111 3 444 11111111 9999999999 3 3 3 7 8888 3 000 7 77 88 0 2 888888 88 4 555555 3 0 0 777777777777777777777777777 0 0 77 0 2222 000000 3 7 2 33 33 777 555 0 111 1111 2 33 0 8 8 444 5 444444444 0 2 000 8 55 6 5 2 77 6 99 5 6 555 1 5 5 5 888
lowQualScore : . .. . . . .. . . . . ........... .. . . . . . . . . . . . . . ..... . . . .. . .. .. . . . . .. .. . . . . . . .... . .. ....... . ... . . .. . .. .. . . . . . .. . . . .............. . .... . .................................................................................. . .... . . . . . . . . . . ...................... ..... . . ......... ... ...... . ... ........ .......... . . . . .... . ... . .. .. . . ...... .. . ...... . . . ........................... . . .. . .... ...... . . . .. .. ... ... . ... .... . .. . . . ... . ......... . . ... . .. . . . .. . .. . . ... . . . . ...
lowQualScore : 2 88 0 0 0 22 0 2 7 7 11111111111 99 6 7 7 7 2 7 7 0 8 8 0 8 4 66666 6 2 0 22 0 00 00 0 0 4 8 44 44 7 5 0 0 7 7 6666 6 22 0000000 8 222 4 0 00 2 88 55 2 5 2 2 3 33 3 3 3 00000000000000 0 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 2222 2 0 0 2 0 0 2 3 7 3 0000000000000000000000 77777 3 7 000000000 000 777777 7 000 77777777 3333333333 3 3 3 3 3333 3 333 3 00 33 7 0 333333 33 0 555555 0 0 0 555555555555555555555555555 0 0 55 0 5555 000000 3 3 0 88 88 555 000 0 000 2222 2 88 0 0 0 000 0 444444444 8 8 000 0 22 7 7 1 99 0 44 7 7 333 0 0 0 0 000
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AG-TCAGTAACAATTTTCAAGTTTCTGNTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCANN-GTCGAATGAATTGCAAAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAAT--AATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGAAAATATTTGTCATCTAGTACGTTCCATACTCAACCATACGACTCTGTATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACACAAAATTTTGCTTCTAAATGT----TTTAGA-ACTGT-TACAATTTCCTTTGCT-ATCGATT-TTTTTTGCAAA-GAAATTC---------ATAAAA-TGATA-TTGCGACACGGNCGACTTACTTCGTTTTTAT--AGAAACAGTGAATC--GTGACC-----TANTTCTTGGTTGCA-CTTATT-------GATAAAACAGTAA-T-GT-GC--TG-ACATA-ATTG-CAATACAA----TTA-GGTTATAA-AAAAAGATA-NAGAG--AAAATTG------TG--AATACATNTCAGCGTAAGAATNTTCAGCGATTTGCGTACCACCCTTTGTATAAAAATCNCCCTTACGTTGCCCATCTCTTGCATACTGTTATACCCCCTCGAAAAAAT----TCGTGTT-AGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-NCCCTAAATGA-AATA-A-AA----CCACAT--GAA-ATCT-A-CA---AAGAATTAC--GT-TTTTTTAAAAT-T-CGT-AAGCACCTGCGACTGC-AANTGCACA--CCTTTATTG-AG-AATGG-GTG---AAACAAGCATGTGTCATGATAAATATTT
Reference ( gi|2 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AG-ACAGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACC-CTCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAAT--AATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTACGT--------------TACGATTCTGGTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAAATTTTGCTTCTGAATGT----TTTAGA-ACTGT-TACAATTTCCTTTGTT-ATGGATT-TTTTTGGCAAA-GAAATTC---------ATAA---------TTGCGACA-GGATAACTTACTTCGTTGTTGT--TAAAACAGTGAATC--GTGAC------TACTTCTTGGTTGCATTTTAT--------GATAAAACAGTAA-T-GT-GC--TG-ACATA-ATTG-CAATACAA----TTA-GGTTATAA-AAAAAGATA-CAGAG--AAGAGTG------TG--AATACATTTCAGC-TAG--ATATT-AACGATT-GCG-AC-A------GTA-A-----CG----TACGT-GTC-ATTTC--GC-TACTGTTAT----TCTTGAAAAAAT----TCATGTT-AGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTACAT--GAA-ATCT-A-CA---ACGAAGTAC--GT-TTTTTTAGAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACA--CTTTTATTC-AG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AG-TCAGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCATTC----AAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTT
gi|3 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactCTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTTT--ATTTATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCACG-CAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT--CCAAAAG--GTTTTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAATGAATTCCATAAGCTATCAATA--GGTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAAT--AATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGAGA-AATATTTGTCATCT-GTA
gi|1 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcTGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AG-TCAGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAAT-GTCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATA--ATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAACGTTCCATACTCAACCATACGACTCTGTATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACACAGAACTCTGCTTTTAAATAT----TTTATA-ATTGC-TACAATTTCCTTTGCT-ATCG-TT-ATTTTTGCATC-GAAATTCATAAAACTGATAA---------TTGCGACACGGA-GATTTTC-TAATTTTTCT--AGGAATAGTGAATC--ATCAA------TAATTCTTGGTTGCAATTTAT--------GATAAAACAGTAATT-CT-GT--TG-ACATA-AGTG-CAATACAA----TTA-GGTTAT-A-AGAAAGATA-TAGAG--AAAATTG------TG--AATATAT
gi|15 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatGTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AG-TCAGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|8 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgATCTTCCAGAA-TA-TTTACAG-CCAGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAA-------GGAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAA-GTCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
gi|10 : tgtgtttgatcaccatctttgtttcgaattgcaaatatctgacaaacatttaaagaaaaagtactttaaaatagcaaaaaagtcgtttaaatcaaaactcaaactatgttaaaagattgaaatatattttactaattgtCAGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACT-GCCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAACA--CTCTCTGTTCTGGAA--ATTATAAT--AATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTACG
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAc
gi|7 : T-GAAACGTACGTTACTGAAACGTACGTTACAa
gi|24 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactagctgtatcgtacatttcccggccaatgttccagaacactttaagtcagtaacaattttcaagtttctatttgatgcatagtattcataaaacatgtaagaaaatatccgatattatgcacagcaattttcgctggacaacttcaaagtgtgttctacatgaaaaaatcaccactatcttcaactctacaaatcgctttatttcattcaaacaacacgcatttgtgaagagatgcttttggaaaaacgatgtgaaagttgatgcaggtgccaaaaagttgtttttaaggtatt-TG-AATTTCATA-GTCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGAT--AAAATAATAGGAAAATGTATAAAGTCtgcaatttgaaattt
gi|6 : CACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAAAT-CCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTC---------ATAAAATTGATAATTGCGACACAGTTAACTGACTTTGTT-TTATAGGAAAACAGTGAGCC--ATGACC-----TACTTCTTGGTTGC---TTATT-------GATAAAACAGTAA-TTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTATAA-AAAC-GATA-AAGAGGGAAAATTG------TG--ACTACATATCAGC-TAAGAATATT-AACGATTTGCG-ACCA------GTA-AAAAATCG----TACGT-GTCCATCTCTTGCATACTGTTATA---CCTTGCAAAAACCTTATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCACATTCGAA-ATCT-ACCA---AAGAAA-ACCGGTCTTTTTTAGAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACA--CCTTTATTTGAG-AATGG-GTG---AAAT
gi|21 : ttcaaaactataagggaggaaacatcatcaggaccgttacattccttaaccccatacaatttctggctaaattatacattttcaaaataaaaatttttgatccccgcctcccaaaatgaaaaaatgcgggcccatttacgcgtataagctaattcctactatgttaaacaaaCAAAATTTTGCTTCTAAATGT----TTTAAA-ACTCT-TGCAATTTCCTTTGCT-ATCGATG-TTTTTTGCAAA-TAAATTC---------ATAAAAATGATATTTGCGACA-CAGCAACTTACTTCGTTTTTAT--AGAAACCGTGAA
gi|30 : AATGT----TTTCGA-ACTGT-TACAATTTCCTTTTTT-ATCGAT
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGCACCTTATTCAACTTGAATAAAACAGTAT-T-GT-ACCCTG-ATATAGATTG-AAA-ATAACATCTTA-GGCTGTATTAAAAAGATATCTGAT--GAGAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGATT-GCGTAC-ACCCTTTGTATA-----CTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAAAATAA--TCATGTT-AGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCACCT--GAACATCTGA-CACACACTAA--AC--G--TCTTCTAAACTCT-CGTCAAGCACCTGCGAC
gi|17 : TTGAAAAT-T----TCATGTT-AGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTACAT--GAA-ATCT-A-CA---ACGAATTAC--G--TTTTTTAAAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACA--CCTTTATTG-AG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCAAAT--GAA-ATCT-A-CA---AAGAATTAC--GT-TTTTTTAAAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACA--CCTTTATTG-AG-AATG
gi|28 : T-A-CA---AAGAATTAC--GT-TTTTT-AAAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACA--CCTATATTG-AG-AATGG-GTGCGTAAACA
gi|11 : ACCT-CAAATGCTAAATGCACA--CCTTTATTG-AG-AATGG-GTGcc
gi|5 : ttCTTC-AAATGCACAAACCTTTATTG-AG-AATGG-GTGtttgttgtaaaataaaatttttaaattcattagctgatgttattgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|4 : C-AAATGCACA--CCTTTATTG-AGAAATGGCGTGgtttttgttttgtaaataataaaatttttttaaattcattccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 11 1 1111111 11 2222222 1 1 4444444444444444 1 222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 1 1 1 222222222 222 11 11 3333333 4444444444444444 111 1 11 1 1 1 2222 1 111 111111 11 1 2222 333333 2 444444444444444444444444444 1111 33333 22222 3333 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 22 99 9 4 2 4 1111111 99 1 0 0 0 0 3 9 11 0 11 1 0 4444444444444444 0 3 000000 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7777 8 8 0 8 0 3 0 0 0 3 888888888 2 333 3 0 44 33 33 6666666 1 0000000000000000 111 0 33 0 0 0 3 1111 0 000 3 999999 33 0 1111 1 111111 1 3 0 7 7 333333333333333333333333333 6666 0 44444 88888 0 5555 2 0 3 11 11 444 99 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 2 5 5 5 000 2 2 2 77
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . . ....... .. . . . . . . . .. . .. . . ................ . . ...... . ...................................................................................... .... . . . . . . . . . . ......... . ... . . .. .. .. ....... . ................ ... . .. . . . . .... . ... . ...... .. . .... . ...... . . . . . ........................... .... . ..... ..... . .... . . . .. .. ... .. . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 0 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 00 22 0 0 5 2 7777777 22 4 8 6 8 8 8 8 66 8 66 0 0 7777777777777777 7 3 333333 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0000 0 0 8 0 8 5 0 0 0 2 222222222 5 222 2 2 00 88 88 2222222 0 2222222222222222 000 0 88 0 0 0 2 2222 0 888 2 555555 88 0 2222 0 777777 0 3 7 3 3 000000000000000000000000000 7777 7 33333 00000 7 0000 0 0 2 00 00 000 00 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 8 0 0 7 000 5 5 5 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTGGTA-------ACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATGT----TTTAGA-ACTGT-TACAATTTCCTTTGTT-ATCGATTNTTTTTG-CAAA-GAAATTCAT-AAAA-T-GAT-A-TTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACC-----TACTTCTTGGTTGC-AT-TTATT-------GATAAAACAGTAA-T-GT-GC--TG-ACATA-ATTG-CAATACAA----TTA-GGTTATAA-AAAAAGATAT---A-GAG--AA-GATT----GTGAATACATTTCAGC-TAA-GATATT-AACGATTTGCG-ACCA------GTATAA----C---C-TACGTTGCCCATTTC--GC-TACTGTTATACC-TCTCGAAAAAAT----TCATGTT-AGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGNTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCANNG--TCGAATGAATTGCAAAATCTATCAATGAGAGTGGTA-------ACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGAAAATATTTGTCATCTAGTAC-GTTCCAT-ACTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAAAATTTTGCTTCTAAATGT----TTTAGA-ACTGT-TACAATTTCCTTTGCT-ATCGATTTTTTTTG-CAAA-GAAATTCAT-AAAA-T-GAT-A-TTGCGACACGGNCGACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACC-----TANTTCTTGGTTGC-AC-TTATT-------GATAAAACAGTAA-T-GT-GC--TG-ACATA-ATTG-CAATACAA----TTA-GGTTATAA-AAAAAGATAN---A-GAG--AA-AATT----GTGAATACATNTCAGCGTAAGAATNTTCAGCGATTTGCGTACCACCCTTTGTATAAAAATCNCCCTTACGTTGCCCATCTCTTGCATACTGTTATACCCCCTCGAAAAAAT----TCGTGTT-AGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-NCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AANTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAAGCATGTGTCATGATAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCAT-ACTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATAT----TTTATA-ATTGC-TACAATTTCCTTTGCT-ATCG-TTATTTTTG-CATC-GAAATTCAT-AAAACT-GATAA-TTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-A-----TAATTCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATT-CT-GT--TG-ACATA-AGTG-CAATACAA----TTA-GGTTAT-A-AGAAAGATAT---A-GAG--AA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTGGTA-------A--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTAT-T-GT-ACCCTG-ATATAGATTG-AAA-ATAACATCTTA-GGCTGTATTAAAAAGATATCTGATGAG--AATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGATT-GCGTAC-ACCCTTTGTATA-----CTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAAAATAA--TCATGTT-AGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAAATT----TCATGTT-AGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTGGTA-------ACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATGT----TTTAGA-ACTGT-TACAATTTCCTTTGTT-ATGGATTTTTTTGG-CAAA-GAAATTCAT-A----------A-TTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-C-----TACTTCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-T-GT-GC--TG-ACATA-ATTG-CAATACAA----TTA-GGTTATAA-AAAAAGATAC---A-GAG--AA-GAGT----GTGAATACATTTCAGC-TA--GATATT-AACGA-TTGCG-A-CA--------GTAA--------CGTACG-TG-TCATTTC--GC-TACTGTTAT----TCTTGAAAAAAT----TCATGTT-AGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATGT----TTTAAA-ACTCT-TGCAATTTCCTTTGCT-ATCGATGTTTTTTG-CAAA-TAAATTCATAAAAA-T-GAT-ATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTGGTA-------ACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTC-AATGAATTCCATAAGCTATCAAT-AG-GTAG-A-------ACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGAG-AAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATGT----TTTCGA-ACTGT-TACAATTTCCTTTTTT-ATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAAAT-CCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCAT-AAAA-TTGAT-AATTGCGACACAGTTAACTGACTTTGTTTT-ATAGGAAAACAGTGAGCC--ATGACC-----TACTTCTTGGTTGC----TTATT-------GATAAAACAGTAA-TTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTATAA-AAAC-GATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG-ACCA------GTA-AAAAATCG----TACGT-GTCCATCTCTTGCATACTGTTATACC---TTGCAAAAACCTTATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTGTTA-------ACTCCCTCTCTATTCTGGAC--AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11 1 1111111 11 2222222 1 1 7777777777777777 1 11 4444444 1111 1 1 1 22222222 11 11 11 1 22222 3333333333333333 2 1 1111 1 1 2222 1 222 111111 11 1 2222 222222 1 666666666666666666666666 2 1 11 1 22 22 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 44 99 1 2 4 1111111 99 1 0 0 0 0 3 3 11 0 11 1 0 6666666666666666 3 88 1 3333333 7777 8 8 0 8 0 1 0 0 0 3 88888888 2 66 3 0 3 0 33 33 5 55555 6666666666666666 0 0 4444 0 0 3 1111 0 333 999999 33 0 1111 222222 3 7 7 888888888888888888888888 3 2 88 3 00 3 77 0 3 11 11 444 8 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 0 5 5 5 000 1 1 1 22
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . ....... .. . . . . . . . .. . .. . . ................ . .. . ....... .... . . . . . . . . . . ........ . .. . . . . .. .. . ..... ................ . . .... . . . .... . ... ...... .. . .... ...... . . . ........................ . . .. . .. . .. . . .. .. ... . . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 3 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 77 22 0 5 2 7777777 22 4 8 6 8 8 8 2 66 8 66 0 0 0000000000000000 3 33 0 3333333 0000 0 0 8 0 8 0 0 0 0 2 22222222 5 88 2 2 2 8 88 88 0 00000 8888888888888888 0 0 8888 0 0 2 2222 0 000 888888 88 0 2222 777777 3 3 3 000000000000000000000000 7 0 33 3 77 5 55 0 2 00 00 000 0 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 5 0 0 7 000 0 0 0 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCAT-AAAACTGATAA-TTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GTATAA---CG---TACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAAANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCAT-AAAA-TGAT-A-TTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GTATAA---CC---TACGTTGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAAAAT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCATA-CTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATA----TTTTATA-ATTGC-TACAATTTCCTTTG-CTATCG-TTATTTTT-GC-ATCGAAATTCAT-AAAACTGATAA-TTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-ATAAT-----TCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATTC-TGT--T-GACATA-AGT-GCAATACAA----TT-AGGTTAT-A-AGAAAGATAT---A-GA--GAA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAA--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTAT-TG-TACCCT-GATATAGATT-GAAA-ATAACATCTT-AGGCTGTATTAAAAAGATATCTGATGA--GAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGATT-GCGTACACCCTTTGTATAC---TCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAAAATAATCATG-TTAGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAAATT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATGGATTTTTTTG-GC-AAAGAAATTCAT-A---------A-TTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-CTACT-----TCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAC---A-GA--GAA-GAGT----GTGAATACATTTCAGC-T-AG-ATATT-AACGA-TTGCG---A-CA---G--TAA---CG---TACG-TG-TCATTTC--GC-TACTGTTAT----TCTTGAAAAAAT--TCATG-TTAGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATG----TTTTAAA-ACTCT-TGCAATTTCCTTTG-CTATCGATGTTTTTT-GC-AAATAAATTCATAAAAA-TGAT-ATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAA-TGAATTCCATAAGCTATCAAT-AG-GTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGA-GAAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATG----TTTTCGA-ACTGT-TACAATTTCCTTTT-TTATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAA-ATCCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCAT-AAAATTGATAA-TTGCGACACAGTTAACTGACTTTG-TTTTATAGGAAAACAGTGAGCC--ATGACCTACT-----TCTTGGTTGC----TTATT-------GATAAAACAGTAATTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTAT-A-AAAACGATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG---ACCA---GTAAAAAATCG---TACG-TGTCCATCTCTTGCATACTGTTATA-CCTTGCAAAAACCTTATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11 1 1111111 11 2222222 1 1 7777777777777777 1 11 4444444 1111 1 1 11 11 11 1 22222 3333333333333333 1 1111 1 1 2222 1 222 111111 11 1 2222 222222 1 6666666666666666666 111 11 1 22 1 22 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 44 99 1 2 4 1111111 99 1 0 0 0 0 3 3 11 0 11 1 0 6666666666666666 3 88 1 3333333 7777 8 8 0 8 0 1 0 0 3 6 2 66 3 0 3 0 33 33 5 55555 6666666666666666 66 0 4444 0 0 3 1111 0 333 999999 33 0 1111 222222 3 7 7 6666666666666666666 555 88 3 00 0 1 55 0 3 11 11 444 8 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 0 5 5 5 000 1 1 1 22
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . ....... .. . . . . . . . .. . .. . . ................ . .. . ....... .... . . . . . . . . . . . .. . . . . .. .. . ..... ................ .. . .... . . . .... . ... ...... .. . .... ...... . . . ................... ... .. . .. . . .. . . .. .. ... . . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 3 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 77 22 0 5 2 7777777 22 4 8 6 8 8 8 2 66 8 66 0 0 0000000000000000 3 33 0 3333333 0000 0 0 8 0 8 0 0 0 2 5 5 88 2 2 2 8 88 88 0 00000 8888888888888888 55 0 8888 0 0 2 2222 0 000 888888 88 0 2222 777777 3 3 3 0000000000000000000 333 33 3 77 0 0 55 0 2 00 00 000 0 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 5 0 0 7 000 0 0 0 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GTATAA--CCGTACGT-GCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAACTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GTATAA---CGTACGT-GCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCATA-CTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATA----TTTTATA-ATTGC-TACAATTTCCTTTG-CTATCG-TTATTTTT-GC-ATCGAAATTCATAAAACTGATAATTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-ATAAT-----TCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATTC-TGT--T-GACATA-AGT-GCAATACAA----TT-AGGTTAT-A-AGAAAGATAT---A-GA--GAA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAA--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTA-TTG-TACCCT-GATATAGATT-GAAA-ATAACATCTT-AGGCTGTATTAAAAAGATATCTGATGA--GAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGATT-GCGTACACCCTTTGTATACTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAA-AATAATCATG-TTAGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAA-ATT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATGGATTTTTTTG-GC-AAAGAAATTC---------ATAATTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-CTACT-----TCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAC---A-GA--GAA-GAGT----GTGAATACATTTCAGC-T-AG-ATATT-AACGA-TTGCG---A-CA---G--TAA---CGTACGT-G-TCATTTC--GC-TACTGTTAT----TCTTGAAAA-AAT--TCATG-TTAGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATG----TTTTAAA-ACTCT-TGCAATTTCCTTTG-CTATCGATGTTTTTT-GC-AAATAAATTCATAAAAATGATATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAA-TGAATTCCATAAGCTATCAAT-AG-GTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGA-GAAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATG----TTTTCGA-ACTGT-TACAATTTCCTTTT-TTATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAA-ATCCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCATAAAATTGATAATTGCGACACAGTTAACTGACTTTG-TTTTATAGGAAAACAGTGAGCC--ATGACCTACT-----TCTTGGTTGC----TTATT-------GATAAAACAGTAATTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTAT-A-AAAACGATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG---ACCA---GTAAAAAATCGTACGT-GTCCATCTCTTGCATACTGTTATA-CCTTGCAAAAACCTT-ATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11 1 1111111 11 2222222 1 1 7777777777777777 1 11 4444444 1111 1 1 11 11 11 1 22222 3333333333333333 1 1111 1 1 2222 1 222 111111 11 1 2222 222222 1 666666666666666666666 111 11 1 22 1 22 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 44 99 1 2 4 1111111 99 1 0 0 0 0 3 3 11 0 11 1 0 6666666666666666 3 88 1 3333333 7777 8 8 0 8 0 1 0 0 3 4 2 66 3 0 3 0 33 33 5 55555 6666666666666666 66 0 4444 0 0 3 1111 0 333 999999 33 0 1111 222222 3 7 7 888888888888888888888 555 88 3 00 0 1 55 0 3 11 11 444 8 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 0 5 5 5 000 1 1 1 22
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . ....... .. . . . . . . . .. . .. . . ................ . .. . ....... .... . . . . . . . . . . . .. . . . . .. .. . ..... ................ .. . .... . . . .... . ... ...... .. . .... ...... . . . ..................... ... .. . .. . . .. . . .. .. ... . . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 3 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 77 22 0 5 2 7777777 22 4 8 6 8 8 8 2 66 8 66 0 0 0000000000000000 3 33 0 3333333 0000 0 0 8 0 8 0 0 0 2 5 5 88 2 2 2 8 88 88 0 00000 8888888888888888 55 0 8888 0 0 2 2222 0 000 888888 88 0 2222 777777 3 3 3 000000000000000000000 333 33 3 77 0 0 55 0 2 00 00 000 0 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 5 0 0 7 000 0 0 0 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GT--A-A---CCGTACGT-GCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GT--ATAA--CCGTACGT-GCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCATA-CTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATA----TTTTATA-ATTGC-TACAATTTCCTTTG-CTATCG-TTATTTTT-GC-ATCGAAATTCATAAAACTGATAATTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-ATAAT-----TCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATTC-TGT--T-GACATA-AGT-GCAATACAA----TT-AGGTTAT-A-AGAAAGATAT---A-GA--GAA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAA--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTA-TTG-TACCCT-GATATAGATT-GAAA-ATAACATCTT-AGGCTGTATTAAAAAGATATCTGATGA--GAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGATT-GCGTACACCCTTTGT--ATACTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAA-AATAATCATG-TTAGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAA-ATT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATGGATTTTTTTG-GC-AAAGAAATTC---------ATAATTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-CTACT-----TCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAC---A-GA--GAA-GAGT----GTGAATACATTTCAGC-T-AG-ATATT-AACGA-TTGCG---A-CA---GT--A-A----CGTACGT-G-TCATTTC--GC-TACTGTTAT----TCTTGAAAA-AAT--TCATG-TTAGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATG----TTTTAAA-ACTCT-TGCAATTTCCTTTG-CTATCGATGTTTTTT-GC-AAATAAATTCATAAAAATGATATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAA-TGAATTCCATAAGCTATCAAT-AG-GTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGA-GAAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATG----TTTTCGA-ACTGT-TACAATTTCCTTTT-TTATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAA-ATCCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCATAAAATTGATAATTGCGACACAGTTAACTGACTTTG-TTTTATAGGAAAACAGTGAGCC--ATGACCTACT-----TCTTGGTTGC----TTATT-------GATAAAACAGTAATTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTAT-A-AAAACGATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG---ACCA---GTAAAAAA--TCGTACGT-GTCCATCTCTTGCATACTGTTATA-CCTTGCAAAAACCTT-ATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11 1 1111111 11 2222222 1 1 7777777777777777 1 11 4444444 1111 1 1 11 11 11 1 22222 3333333333333333 1 1111 1 1 2222 1 222 111111 11 1 2222 222222 1 2 77777777777777777777777 1 1 11 1 22 1 22 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 44 99 1 2 4 1111111 99 1 0 0 0 0 3 3 11 0 11 1 0 6666666666666666 3 88 1 3333333 7777 8 8 0 8 0 1 0 0 3 4 2 66 3 0 3 0 33 33 5 55555 6666666666666666 66 0 4444 0 0 3 1111 0 333 999999 33 0 1111 222222 3 3 33333333333333333333333 3 2 88 3 00 0 1 55 0 3 11 11 444 8 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 0 5 5 5 000 1 1 1 22
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . ....... .. . . . . . . . .. . .. . . ................ . .. . ....... .... . . . . . . . . . . . .. . . . . .. .. . ..... ................ .. . .... . . . .... . ... ...... .. . .... ...... . . ....................... . . .. . .. . . .. . . .. .. ... . . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 3 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 77 22 0 5 2 7777777 22 4 8 6 8 8 8 2 66 8 66 0 0 0000000000000000 3 33 0 3333333 0000 0 0 8 0 8 0 0 0 2 5 5 88 2 2 2 8 88 88 0 00000 8888888888888888 55 0 8888 0 0 2 2222 0 000 888888 88 0 2222 777777 3 7 33333333333333333333333 3 0 33 3 77 0 0 55 0 2 00 00 000 0 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 5 0 0 7 000 0 0 0 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGATTTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCATA-CTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATA----TTTTATA-ATTGC-TACAATTTCCTTTG-CTATCG-TTATTTTT-GC-ATCGAAATTCATAAAACTGATAATTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-ATAAT-----TCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATTC-TGT--T-GACATA-AGT-GCAATACAA----TT-AGGTTAT-A-AGAAAGATAT---A-GA--GAA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAA--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTA-TTG-TACCCT-GATATAGATT-GAAA-ATAACATCTT-AGGCTGTATTAAAAAGATATCTGATGA--GAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGA-TTGCGTACACCCTTTGT----ATACTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAA-AATAATCATG-TTAGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAA-ATT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATGGATTTTTTTG-GC-AAAGAAATTC---------ATAATTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-CTACT-----TCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAC---A-GA--GAA-GAGT----GTGAATACATTTCAGC-T-AG-ATATT-AACGA-TTGCG---A-CA---GT----A-A----CGTACG-TG-TCATTTC--GC-TACTGTTAT----TCTTGAAAA-AAT--TCATG-TTAGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATG----TTTTAAA-ACTCT-TGCAATTTCCTTTG-CTATCGATGTTTTTT-GC-AAATAAATTCATAAAAATGATATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAA-TGAATTCCATAAGCTATCAAT-AG-GTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGA-GAAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATG----TTTTCGA-ACTGT-TACAATTTCCTTTT-TTATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAA-ATCCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCATAAAATTGATAATTGCGACACAGTTAACTGACTTTG-TTTTATAGGAAAACAGTGAGCC--ATGACCTACT-----TCTTGGTTGC----TTATT-------GATAAAACAGTAATTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTAT-A-AAAACGATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG---ACCA---GTAAAAA-A---TCGTACG-TGTCCATCTCTTGCATACTGTTATA-CCTTGCAAAAACCTT-ATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11 1 1111111 11 2222222 1 1 7777777777777777 1 11 4444444 1111 1 1 11 11 11 1 22222 3333333333333333 1 1111 1 1 2222 1 222 111111 11 1 2222 222222 1 1 77777777777777777777777 1 1 11 1 22 1 22 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 44 99 1 2 4 1111111 99 1 0 0 0 0 3 3 11 0 11 1 0 6666666666666666 3 88 1 3333333 7777 8 8 0 8 0 1 0 0 3 4 2 66 3 0 3 0 33 33 5 55555 6666666666666666 66 0 4444 0 0 3 1111 0 333 999999 33 0 1111 222222 3 3 33333333333333333333333 3 2 88 3 00 0 1 55 0 3 11 11 444 8 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 0 5 5 5 000 1 1 1 22
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . ....... .. . . . . . . . .. . .. . . ................ . .. . ....... .... . . . . . . . . . . . .. . . . . .. .. . ..... ................ .. . .... . . . .... . ... ...... .. . .... ...... . . ....................... . . .. . .. . . .. . . .. .. ... . . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 3 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 77 22 0 5 2 7777777 22 4 8 6 8 8 8 2 66 8 66 0 0 0000000000000000 3 33 0 3333333 0000 0 0 8 0 8 0 0 0 2 5 5 88 2 2 2 8 88 88 0 00000 8888888888888888 55 0 8888 0 0 2 2222 0 000 888888 88 0 2222 777777 3 3 33333333333333333333333 3 0 33 3 77 0 0 55 0 2 00 00 000 0 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 5 0 0 7 000 0 0 0 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCATA-CTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATA----TTTTATA-ATTGC-TACAATTTCCTTTG-CTATCG-TTATTTTT-GC-ATCGAAATTCATAAAACTGATAATTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-ATAAT-----TCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATTC-TGT--T-GACATA-AGT-GCAATACAA----TT-AGGTTAT-A-AGAAAGATAT---A-GA--GAA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAA--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTA-TTG-TACCCT-GATATAGATT-GAAA-ATAACATCTT-AGGCTGTATTAAAAAGATATCTGATGA--GAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGA-TTGCGTACACCCTTTGT----ATACTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAA-AATAATCATG-TTAGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAA-ATT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATGGATTTTTTTG-GC-AAAGAAATTC---------ATAATTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-CTACT-----TCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAC---A-GA--GAA-GAGT----GTGAATACATTTCAGC-T-AG-ATATT-AACGA-TTGCG---A-CA---GT----A-A----CGTACG-TG-TCATTTC--GC-TACTGTTAT----TCTTGAAAA-AAT--TCATG-TTAGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATG----TTTTAAA-ACTCT-TGCAATTTCCTTTG-CTATCGATGTTTTTT-GC-AAATAAATTCATAAAAATGATATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAA-TGAATTCCATAAGCTATCAAT-AG-GTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGA-GAAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATG----TTTTCGA-ACTGT-TACAATTTCCTTTT-TTATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAA-ATCCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCATAAAATTGATAATTGCGACACAGTTAACTGACTTTG-TTTTATAGGAAAACAGTGAGCC--ATGACCTACT-----TCTTGGTTGC----TTATT-------GATAAAACAGTAATTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTAT-A-AAAACGATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG---ACCA---GTAAAAA-A---TCGTACG-TGTCCATCTCTTGCATACTGTTATA-CCTTGCAAAAACCTT-ATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
blockSeqs : TA C A C C C G T G CTG G AA C T G C . T T C T T TT G G G GA AG TC C T TA TA . T A C A CT CT T G G . AT T T A G TT TA T C TACATTCCTTAACCCC T GC T GTTAAAC TGGT T G T T G A A A C AT T T GA CC C CTGTC ACCTTATTCAACTTG AT T CCT G G T CATC A ATT TCTGAT GG T TCTT TAAGA . T ACCAGTAAAAAAT . T TT A A C T A T A . . . . C C C CCCC GCTA TC CA G CC AACCGGTC A C CTCGTC C G . T A C GGT C T A CA
blockSeqs : TA C . . . C T . A . G . . . G . . T T C T A . A G . G . . . . TG A . . . . . CC . T G G . . T T A G TT TA T . . . . A . . . . . T . . A T C TT T T . . C . ATTTTAT T . TG . . T . . AA CA . . . TAG . . ACAGTAA . . . . . . A . . A . . . . . . . . C . A . C AAACG . . TGCGT C G . . . . CGT
blockSeqs : A C . . . C G . G . G . . . G . . T T C T T . A G . G . . . . . A . . . . . TA . A G A . . A . G G T T T . . . . . G . . . . . C T . . . . . TTATT A . T . . . . . A AA . . . . T . . A . . . . . . . . C . A . C TACGT . . TCGT C G . . . . .
blockSeqs : T . . . . C T . T . G . . . G . . T T C T C . A A . G . . . . . T . . . . . CC . T G A . . T . . . T A G . . . . . . . . . . . . C . A . C TACGT . . TCGT C G . . . . .
blockSeqs : . . . T T . A . G . . . A . . . C . . . . . . . . . . . . . G . . . . . AA . A . . . . . . . . A . A . C TACGT . . TCGT C G . . . . .
blockSeqs : . . G . A . G . . . . . . . . . . . . C . . . C TTTAT . . CCGT A T . . . . .
blockSeqs : . . . . . . . . . . TACG . . . A . . . .
blockSeqs : . . TA . . . C .
blockSeqCons : TA G****** ******* TA ** ** *** C*** A* C* TACGT**** TCGT***
originalCons : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
finalCons : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---AG------AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCAC---AT--GAAA-TCT-AC-AAAGAATTACGT----TTTTT-TA-AAATTCGT---AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA
Alignments
lowQualScore : 11 1 1111111 11 2222222 1 1 7777777777777777 1 11 4444444 1111 1 1 11 11 11 1 22222 3333333333333333 1 1111 1 1 2222 1 222 111111 11 1 2222 222222 1 1 77777777777777777777777 1 1 11 1 22 1 22 1 11 11 111 1111 1111 11 11 111111111 1111111 222
lowQualScore : 0 11 0 6 6 5 1 1 5 1 888 3333333 66 5 5 3 5 5 1 1 2 1 6 99 5 1 6 77 99 99 6 6 88 77 6 6 6 5 5 44 99 1 2 4 1111111 99 1 0 0 0 0 3 3 11 0 11 1 0 6666666666666666 3 88 1 3333333 7777 8 8 0 8 0 1 0 0 3 4 2 66 3 0 3 0 33 33 5 55555 6666666666666666 66 0 4444 0 0 3 1111 0 333 999999 33 0 1111 222222 3 3 33333333333333333333333 3 2 88 3 00 0 1 55 0 3 11 11 444 8 5 5 5 2222 8888 66 44 4 11 333333333 4 4 5555555 1 9 5 0 5 5 5 000 1 1 1 22
lowQualScore : . .. . . . . . . . . ... ....... .. . . . . . . . . . . .. . . . .. .. .. . . .. .. . . . . . .. .. . . . ....... .. . . . . . . . .. . .. . . ................ . .. . ....... .... . . . . . . . . . . . .. . . . . .. .. . ..... ................ .. . .... . . . .... . ... ...... .. . .... ...... . . ....................... . . .. . .. . . .. . . .. .. ... . . . . .... .... .. .. . .. ......... . . ....... . . . . . . . ... . . . ..
lowQualScore : 8 44 0 7 7 7 7 3 7 0 888 8888888 99 0 0 0 7 7 7 7 5 7 0 22 7 0 7 77 22 22 7 7 33 77 7 7 7 7 7 77 22 0 5 2 7777777 22 4 8 6 8 8 8 2 66 8 66 0 0 0000000000000000 3 33 0 3333333 0000 0 0 8 0 8 0 0 0 2 5 5 88 2 2 2 8 88 88 0 00000 8888888888888888 55 0 8888 0 0 2 2222 0 000 888888 88 0 2222 777777 3 3 33333333333333333333333 3 0 33 3 77 0 0 55 0 2 00 00 000 0 7 7 7 1111 8888 99 44 4 11 111111111 4 4 2222222 1 4 0 5 0 0 7 000 0 0 0 00
consensus : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
Reference ( family-914 ) : AGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTGTTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A-----G-AAATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTCTATTT--CAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGCTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-NTTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCG--TCAAATGAATTGCANAATCTATCAATGAGAGTG-------GTAACCCCCTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGAAATATTTGTCATCTAGTAC-GTT-CAT--CTCAACC--ATACGATT-CTG--TATNTTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTAT-------AAACACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATCGATTNTTTTT-GC-AAAGAAATTCATAAAANTGATAATTGCGACACGGATAACTTACTTCGTTTTTATAG--AAACAGTGAATC--GTGACCTACT-----TCTTGGTTGC-AT-TTATT-------GATAAAACAGTAATTG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAT---A-GA--GAA-GATT----GTGAATACATTTCAGC-TAAG-ATATT-AACGA-TTGCG---ACCA---GT----A-A---CCGTACG-TGCCCATTTC--GC-TACTGTTATA-CCTCTCGAAAA-ANT-ATCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CCA-C--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG---AAACAANCATNTGTNATGNNAAATATTT
gi|1 : TGCATCGTACAT-TTCCC---------TTTCAGAA-TACTTCG-AGTC-AGGAACA-TTTTTAAATATTTGTGTGATGCAC-AATATCAATGAAACATGTGAAAA---ATACATGTAAATCACCCAATATTA--TGCAAAGCAATTTTCCCTGGACATCTT-TA-AAGTGTGTTCTATACCAA-CAATATCACCATCATCTTCAACCCTGCAAA-CGGTTCATTTCTATTT--CAAGCAACACACATTCTGTGAACA-ATGCTTTTGA-AAAACGATC--TG--A-ACGCTAATG-TATGTGTCAAAACGTTGCTTCT--AATG-TTTTTCGTAACGTACGTTTCAGTAACCTACGATTCAC-AT-ATT-TA-AATTTCAATG--TCGAATGAATTGTAATATCTATCAATTAAAGTGGTACATTGTAACTCTCTCTCTATTCTACAA--ATTATTATCGAATAATAGGAAAATGTATAAAATATATTCAAAACCTGTATAGGAAGAAACATTTACCATCTAGAAC-GTTCCATA-CTCAACC--ATACGACT-CTG--TATGTTACACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------AAACACAGAACTCTGCTTTTAAATA----TTTTATA-ATTGC-TACAATTTCCTTTG-CTATCG-TTATTTTT-GC-ATCGAAATTCATAAAACTGATAATTGCGACACGGA-GATTTTC-TAATTTTTCTAG--GAATAGTGAATC--ATCA-ATAAT-----TCTTGGTTGCAAT-TTA-T-------GATAAAACAGTAATTC-TGT--T-GACATA-AGT-GCAATACAA----TT-AGGTTAT-A-AGAAAGATAT---A-GA--GAA-AATT----GTGAATATAT
gi|10 : tatctattcgagagtgttacctctaagcgctactttgatttgttttttaaaaaactaaaaaaaatatctttgggttatgatccagcaaatgtattaacagtcttacatgatacattaaacttgaaagcatgtatcaaaagtaatgtacattgcaaaatcaaatctctattcaaatcgttaatttttttcatgagattgcaatgtaaacataaaaagaaaatgcaatcataaatcaataaacgcacacaaacttgtttcaaaattgtaactttcgttcacaaagtataaattaataaaatactctgctacttttcttgcatgtcgcttaaaaatctaaagttcatataatgtatctgaactacatattgtattcaacacttttgtttatgttcaccctttacacatctctgtggtatcgaagaactatactcagatagttctttcatgtatctcatttttgatgaatgaaatataaatgaatattgctggaattttttctttattgtgtttatcaccttccctgattgcaaatatcgacaaacaagtaatgagaaaaaaaatacttagaaaacgttatgaaagccttttgaataactgccgacctatgttatC-AGTAACAATTTTCAAGTTTCTGGTTGACGCAT-AGTGTTCATAAAACATGTAGGAA---A-----G-ACATCACCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATAGCTTTATTTTTATTT--CCATCAACACGCATTGTGTGAAGA-ATGCTTTTGG-AAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAATAGTTGTTTTT--AAGGTATTTT-GTAACGTACGTTTCAGTAACGTACGATTCAT-GC-ATT-TG-AATTTCACTG--CCAAATGAATTGCATAATCTACCAATGAGGGTG-------GTAA--CACTCTCTGTTCTGGAA--ATTATAATAATATAATAGGAGAA-G-ATAAGA-CTATTCAAAACCTGTAT-GGAGAAAATA-TTGTCA-CTAGTAC-G
gi|11 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A----AAAAT-T-----T-TATTT-TA-CAAC-------AAA-ACCT-CAAATGCTAAATGCACACCTTTA-TTGAG-AATGG-GTG---AAc
gi|12 : ACAGTATATCCCGTGACCGACCCTGTCTCTTGTTTGC-ACCTTATTCAACTTGAATAAAACAGTA-TTG-TACCCT-GATATAGATT-GAAA-ATAACATCTT-AGGCTGTATTAAAAAGATATCTGATGA--GAATGATTTCTTGGAAATACATTTCAGCGTAA--ATCTTCAGCGA-TTGCGTACACCCTTTGT----ATACTCCCTTACGTTGCCCATTTC--GC-TACTGTTATACCCTCTCGAAAA-AATAATCATG-TTAGTTGAGTAATT-AAAACAACCATAGGTTTTACTAATTTACTTCTCTAAATCCCCTAAATGACAATACACAACCCCCCA-C--CT--GAACATCTGA-CACACACTAAAC--G--TCTTC-TA-AACTCT-CGTCAAGCACCTGCGACgattcttaataacgaatgtttatgattttaattattataaattttggcacgtaaactatcgtcattctttaattatggcacatcaaaaatgggtgtttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaaattaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaatatcgacaattttctatgttttaatgttaataattctgct
gi|15 : GTATCGTACA-ATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTGAGAA---A-----G-AAATCATCCGATATTA--TGCTCAGCAAGTTTCGCTGGACAACTTCCA-AAGTGTGCTCTACATGAA-AAA-ATCACCAC
gi|17 : actctcaaattatgttcaaaacttgaaatttgcgttactagtgAAA-ATT--TCATG-TTAGTGAGGTAATTAAAAACAATCATAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAT-TAC--G--TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATGG-GTG-----CCAAGCATGTGTCATGATAAATATTT
gi|2 : ttgAGCTGTATCGTACATATTCCCCGGCCAATGTTCCAGAA-CACTTTA-AGAC-AGTAACAATTTTCGAGTTTCTGGTTGATGCAT-AGTATTCATAAAACATGTAGGAA---A-----G-AAATCACCCGATATTA--TGCACATCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTTAACTCTACAAATCGCTTTATTTCAATTA--AAAACAACACGCATTATGTGAAGA-ATGCTTTTGG-AAAACAATG--TG--A-AAGCTGATG-CAGGTGACAAAAAGTTGTTTTTTAAAGG-ATTTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GC-ATT-TG-AATTTCACCC--TCAAATGAATTGCATAATCTATCAATGAGGGTG-------GTAACCCTCTCTCTGTTCTAGAA--ATTATAATAATATGATAGGAAAATGTATAAAATCTATTCAAAACCTGTATAGGAGGTAATATTTGTCATCTAGTAC-GT-----------------TACGATT-CTG--GTTTTTATACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNCACAAAATTTTGCTTCTGAATG----TTTTAGA-ACTGT-TACAATTTCCTTTG-TTATGGATTTTTTTG-GC-AAAGAAATTC---------ATAATTGCGACA-GGATAACTTACTTCGTTGTTGTTA--AAACAGTGAATC--GTGA-CTACT-----TCTTGGTTGC-AT-TTTAT-------GATAAAACAGTAA-TG-TGC--T-GACATA-ATT-GCAATACAA----TT-AGGTTATAA-AAAAAGATAC---A-GA--GAA-GAGT----GTGAATACATTTCAGC-T-AG-ATATT-AACGA-TTGCG---A-CA---GT----A-A----CGTACG-TG-TCATTTC--GC-TACTGTTAT----TCTTGAAAA-AAT--TCATG-TTAGTGAGGTAATTAAAAACAATCACAG--TTTA--AGTTTA---CTCCAAA-GCCCTAAATGA-AATA-A-AA----CTA-C--AT--GAA-ATCT-A-CAACGAAG-TAC--GT-TTTTT-TA-GAAT-T-CGT-ATACACCTGCGACTGC-AATTGCACACTTTTA-TTCAG-AATGG-GTGGGTAAATAACCATTTGTAATACAAAATATTT
gi|21 : CAAAATTTTGCTTCTAAATG----TTTTAAA-ACTCT-TGCAATTTCCTTTG-CTATCGATGTTTTTT-GC-AAATAAATTCATAAAAATGATATTTGCGACACAG-CAACTTACTTCGTTTTTATAG--AAACCGTGAA
gi|22 : CATAG--TTTA--AGTTTA---CTCCAAA-TCCCTAAATAA-AATA-A-AA----CCA-A--AT--GAA-ATCT-A-CAAAGAAT-TAC--GT-TTTTT-TA-AAAT-T-CGT-AAGCACCTGCGACTGC-AATTGCACACCTTTA-TTGAG-AATG
gi|24 : -TG-AATTTCATAG--TCAAATGAATTGCAAAATCTATAAATGAGAGTG-------GTAACCCCCTCTCTTTTCTGGAA--ATGTTGATAAAATAATAGGAAAATGTATAAAGTC
gi|28 : T-A-CAAAGAAT-TAC--GT-TTT-T-TA-AAAT-C-CGT-AATCACCCGCGACTGC-AATTGCACACCTATA-TTGAG-AATGG-GTGCGTAAACA
gi|29 : ATAAAACATGTATGAACTGA-----G-AAATCTCCTGATATTAAATACACAGCAGTTTTCGCTGGACAACTT-CA-AAcc
gi|3 : CTATATCG---ATATTCCC-GGCCAATGTTCCAGAAACACTTTA-AGTCCAGAAACAATATTCAAATTT-TATTT-ATGCATTAGTATTCATAAAACATATAAGAA---A-----G-AAATCATCCGATATTA--TGCAC-GCAATTTTC-CTGGACAACTT-CATAAGTGT-TTCTACAT-AA-AAA-ATCACCACTATCTTCAAC-CTACAAATCGCTT-ATTTCTATTTTTCTAACAA-ACCCATTATGT-AAGA-ATGCTTTTA--AAAACGATGAGTGTCACAAGTTGATGTCATGT-CCAAAAGGTT---TTT--ACGT-ATTT--G-AACGTACGTTCTAGCTACGTACGTTTCATTGC-ATTCTG-AATTTCACCGCTTCAA-TGAATTCCATAAGCTATCAAT-AG-GTA-------G-AACCCCCTCTCTGTTCTGAAAATATTAAAATAATATAAT-GGAAAA-GTATAAAATCTATTCAAAACCTGTATAGGA-GAAATATTTGTCATCT-GTAa
gi|30 : gtcttacgtatatatcattaaatctgaaggcagtatcaaaataacgtacattacaaagttcaaataatcttatccaaaacttgtaaaaaattctacgagattacgacgaaaaaacatgaaaagcaaatcaatctgactttaacttttttttatattgaaatcgccacaccaataaaccacacaactcgtttcaaaattgtaactgtacttaacaaaagtagaaattaatcaaatgactctgctaattttcatgcagttcgcttaaaaaaatctaaattctttcctaaaacgatctaagtacattttgtattcaacacttgtttagattacacttttactcaccagtgtatgaatagtctatactctttattctacctttatcttattttcgataaatcattaatattactacattagtctttttctatgtgttatcaccttataattgattcgtattgcaaatatctgctcaatcaagcgaaagaataaaagcactaaaaaaaacgttaaaaaggccttttaaaccttttaaatcactctcaaattatgttcaaaacttgaaatgtacgttacagcAATG----TTTTCGA-ACTGT-TACAATTTCCTTTT-TTATCGAT
gi|4 : -AATA-A-CA----TCAGCTAAT--GAA--TTT-A---AAAATT-TA------TTTTT-TACAAA--------AAAAACCT-------C-AAATGCACACCTTTA-TTGAGAAATGGCGTG---AAA
gi|5 : gagtgtaaatct--AT--GAA--TTT-A--AAAAAAT-TTT--AT-TATTTACA-AAAC-------AAAAACCTTCAAATGC-A----CAAACCTTTA-TTGAG-AATGG-GTG---gattcttaataacgaatgtttatgattttaattatataaattttggcacgtaaatatcgtcattctttaattatgcacatcaaaaatgggtgtttaagttaaactctggaaaacgctacaaaaatgtacgttacgattaaaagacatttggaaacttaatctttgattgaagaactttatcatcttccatgtttatatgtattttcgtaatcttgattatgtgatgccttttaaaaacaaagaaattgtgatacttcagggaaactttctttccccaggatgattaaaatatcgacaattttctatgttttaatgttaataaattctgcttcaaaccctttacaatcaatggctagcgtatatctgttcaagagtgtggcctctgaatggtactgtttttgaaaaggaaggaaactactcatattattttcggggtattttccagcaaaggtattaacagtcttacgtgaaacattaatcttgaaggcaggtatcaaaagtaacgtacattacaaagtcaaatacctatccaaaacttgtaaaattctgacaagattacgacgaaaacatgaaaagaaaatgcaatctggggtacttttactttttatattgaaatccacaccaataaacgccacaaactcgtttcaaaattgtaacgtacgttaacaaaatataaattaatcaaatactctgctaattttcatgcatttcgcttaaaaatcataaactatctgaactacatgttgtaattcaacactttagtttatgaatacactttactcacccatgtggtat
gi|6 : TTCAAAAC-TATAAGGGAGGAAACAT----CATC-AGGACCGTTACATTCCTTAACCCCATACAATTTCTGGCTAAATTATACATTTTCAAAATAAAAATTTTTGATCCCCGCCTCCCAAAATGAAAAAATGCGGGCCCATTTACGCGTATAAGCTAATTCCTACTATGTTAAACAAACACAAAATTTTGATTCTGAATGTGGTTTTTAGATACCGTGTATAA-ATCCTTTGTTTATCGATTGTTTTTGGCAAAAGAAATTCATAAAATTGATAATTGCGACACAGTTAACTGACTTTG-TTTTATAGGAAAACAGTGAGCC--ATGACCTACT-----TCTTGGTTGC----TTATT-------GATAAAACAGTAATTGTTGC--TGGACATA-ATTGGCAATACAA----TTAAGGTTAT-A-AAAACGATAA---A-GAGGGAA-AATT----GTGACTACATATCAGC-TAAGAATATT-AACGATTTGCG---ACCA---GTAAAAA-A---TCGTACG-TGTCCATCTCTTGCATACTGTTATA-CCTTGCAAAAACCTT-ATCGTGTTTAGTGAGGTAATTAAAAATAATCACAG--TTTA--AGTTTA---CTCCAAA-G-CCTAAATGA-AACA-A-AA----TCA-C--ATTCGAA-ATCT-ACCAAAGAA--AACCGGTCTTTTT-TA-GAAT-TGCGT-AAGCACCT-CGACTGC-AATTGCACACCTTTATTTGAG-AATGG-GTG---AAAtccatctgttatgttattgttcttcttgataacgaatgtgttagattatattatattatagtatttttggcagtaaagctttattgcgtcattctttaattatggcacatcaagaaatgggtttaaactctggaaaacgctaccaagaaaatgtacgttcaattaaaaagccatttggaaagattaatctttgagttgaagactcttgatcgatccttcgtgtttacaatgttattttcgtaaatctttattgatgtgagtgcttgttaataaacacaaaagaaattgtgtattacttcagggaaactttctttccccagaatgattaatatatcgacagttttctagtatggtgattgttcttattaaactactcgcttcaataaacctctttacatcattaggcctagcagctgtatctgtttcaagaatgggtgtcctctgaacgctactattttttgaaaaggaaggaaaccgctcaaattattttcgaagtattttccatcaaaggtattaacagtcttacgtgaaacattagttttgaaagcaggtatcaaaagtaacgtacattacaaagtcaaatatatatccaaaacttgtacaattctgacgagattgcgatgaaaacatgaaaagaaaatgcaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaaagaaaatgcaatctggggtacttttaattgnnnnnnnnnntgctaattttcatgcatttcgcttaaaaatccaaagt
gi|7 : AGCTGTATCGTACAT--TTCCCGGCCAATGTTCCAGAA-CACTTTA-AGTC-AGTAACAATTTTCAAGTTTCTATTTGATGCAT-AGTATTCATAAAACATGTAAGAA---A---------AT-ATCCGATATTA--TGCACAGCAATTTTCGCTGGACAACTT-CA-AAGTGTGTTCTACATGAA-AAA-ATCACCACTATCTTCAACTCTACAAATCGCTTTATTTC-A-TT--CAAACAACACGCATT-TGTGAAGAGATGCTTTTGGAAAAACGATG--TG--A-AAGTTGATG-CAGGTGCCAAAAAGTTGTTTTT--AAGG-TATTT-GTAACGTACGTTTCAGTAACGTACGTTTCAT-GCAATT-TGAAATTTt
gi|8 : ctaccttttatctattttcgatgaatcataatattctaattagtcttttctttattgtgtttgatcaccttaaatgattcgtattgcaaatatctggcaagcaaggaaaggaaaagcactaagaaaacggtataaagccttttaaagccttttaaatcactctcaaattatgttaaaacttgaaatgtacgttactATCTTCCAGAA-TA-TTTACAGCC-AGTAAGAAATTTCAAGTATTTGGTTGAT--------ATTTACGAAG-------GAA---A-----G-AAATCGCTTGATATTA--TGCCAAGCAATTTTTGGTGGACAACGT-CA-A---GTGTT-----TAAACAAA-ATCACCACCATCTTCAACTTAACAAACCG-TTTATCTCCATTT--CAAACAACACGTAATATGTAAAGA-ATGCTTTTGG-AAAACGATG--TG--A-TAGCTGATG-CAGGTGCCAAAAAGTTGTTTTTTGAAAT-GTTTT-GTAATGCACGTTTCAATAACGTACGTCTCAT-AC-AAT-TG-AATTTCAAAG--TCATATGAATTGCAAAACCCATCAATGAAAGTG-------TTAACTCCCTCTCTATTCTGGAC--AT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACCCTTTACAATCAATGGCTAGCGTATATCTGTTCAAGAGTGTGGCCTCTGAATGCTACTTTTTTTGAAAAGGAAGGAAACCTCAATTATTTTCGGGGTATTTTCCAGCAAAGGTATTAACAGTCTTACGTGAAACATTAATCTTGAAGGCAGGTATCAAAAGTAACGTACATTACAAAGTCAAATATCTATCCAAAACTTGTAAAATTCTGAACGAGATTACGACGAAAATGAAAGAAAATGCAATCTGGGGTACTTTTACTTTTTATTGAAATCGCACACCAATAAACGCACAAACTCGTTTCAAAATTGTAACGTACGTTAACAAAAATAAATTAATCAAATACTCTGCTAATTTTCATGCATTTCGCTTAAAAATCTAAAGTTCATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTATGAATTACACTTTACTCACTCCATGTGGTATTGAA
Unaligned ( gi|13 ): TTCTGCTAATTTTCATGCATTTCGTTTAAAAATCAAAAGTTCATATAAACTATCTGAACTACATGTTGTATTCAACACTTTAGTTTATGATTTACACTTTACTCATCCCATGTGGTATTGAAAAACTACTGTATAATTCTATCCTTTTATTTCATTTTTCGATGAATCATATTACTAATTAGTCTTTTCTTTATTGTATTTGATCACCTTAAATGATTCATATTGCAAATATATGGCAAACAAGGAAAAGAAAGGCACTAAGAAAATGGTATAAACGCCTTTAAAACCTTTTAAACCACTCTCAAATTACGTTAATAGCTTGAAAT
Unaligned ( gi|14 ): TACACCCATTCTCATTAAAGATGCACATTTGAAGTTTTATTTTGATAAAGATAAACTTCTTAATTTCATTAGCTGGTGTCATTGGTTCTTGATAATAAATATCTAATGATTTTAATTCTATAAAATTTTCTCGCGTACATCATCATTATTCTGTAAGCATGGCGCATCGAAAAAAAGGCGCTTAAACTCCAAAAATGTTATAAAAAGTACACTGTACGTTACAATTAAATGACCAAAAAAAATTGAACCTCTATCATC
Unaligned ( gi|16 ): AATTCTATCCTTATATTCATTTTTCGAATGACATCATAATATGTATAAATTATCTTCTTCGTTTATTGGTGTTGATCACTTAAATGATTCGTAATTGCAAATATTGGCAAACAAGGAAAGCGAAAACACTAAGAAAAGGTATAATAAGGCTTTAAAGCCTTTTAATCAACTATCAATTAATGTTGAAAAACCTTGAAATTTACGT
Unaligned ( gi|18 ): CTTGATTAACAAATATCTAATGATTTTCATTCTACAAATTCTCTCACGTAAACCATCGTCATTCTTTAATAATGATACAGCAAATCTTTAAGACGTTTAAACTCTAATAAATGATATAAAAATAAAAGATACAAAAAAGAATTTTGAACCTTCATTTGATTATTTACATTATATTATCTGTTTA
Unaligned ( gi|19 ): GAGTATAACACCCAATTTTAATGATGATGTGCATTTCTTTTGTAAAAATAAACTTGTGAAATTCAATAGTCGATGTTATTAGCTCTTGAAAACAAATATTGGATGATTTTAATTTAGAATTCAAGGACACGCAAGTGTC
Unaligned ( gi|20 ): TTAAATTCTGGAAAACGCTACAAAAATGTATGTTACAATTCAAAGACATTTGGAAAATTAATCTGTGATTGAAGAACTTTATCATTTTCCAGTTATGTATATGTATTTTAGTCATCTTTATTATATTTTTGAAAAAAAA
Unaligned ( gi|23 ): TTTTTTGGAAAGGAAAGAAACTACACAAAATATTTTCGGGTATTTTCCAGCAAATGTATTAACGGTCTTATGTAAAACTTGAAAGCATATATCAAAAGTAACGCA
Unaligned ( gi|25 ): TTAAAACCCTTTACAACCAATGGCTAGCATATATCTGTTCGATAGTGTGACCTCTGAACGCTACTATTTTTGGAAAGAAAGGAAACTACTCAAAT
Unaligned ( gi|26 ): CAAGGGTTTACCAGTAAACATAAAAAGAAAATGCAATTTGAGGGTGTTTTTACCTTTTTAATGAAAAACAAACATGTTTCAAAATTATAATGTAC
Unaligned ( gi|27 ): CCCTTTACAGTCAAGTGGCTAGTGTAATCTGGTTCAGCGTGTGGCCGATTGCATATCTACCCTTTTTTTGAAAAGATATGGAAAGTTCG
Unaligned ( gi|31 ): TCAAATATATATCCAAAACTTGTAAAATTCGGACGA