lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 11 4 33 33333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 99999999999999 3333 55555555555555555555555555555 111111 3333333333333333333
lowQualScore : 6 7 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 22 0 55 3 55555 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 1 22 33 77 8 99999999999999 2222 6 7 4 5 66 66666666666666666666666666666 4 4 555555 2222222222222222222
lowQualScore : . . ...................................................................................................................................................................................................................................................................................................................................................................................................... . .. . .. . ..... .................................................................................... . . .. .. .. . .............. .... . . . . .. ............................. . . ...... ...................
lowQualScore : 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 0 55 0 55555 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 44 22 22 8 77777777777777 0000 7 6 5 0 99 55555555555555555555555555555 4 4 999999 5555555555555555555
consensus : NTATAAAAACCAACAACACT-CAA---CCGCCAG----------TGTC---GGA--TCTA-NTAAAAGATGCGAAGGTCAAAA------TATCAA---A----TT--AT--AT-AAGCACATATCTAGAATGACCAA----CGACAGCGA-CAAT-AA---ATT------GTCAAAT-TT-CCG-GGACGACCTG-----TCC-CTTCTT--CA--GGACGAATTATGGTTAGAAAA--ACATAGAAAATG-------AAAAAAACCAATGAATCTGAGAACACTAAATTCTTACCACTACGATGAATAACTATTGATTGAACGTATATGTCTACAGTTACACTGTAACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCT-CATGTAACTGTTTCACANTGTAACATGTAGTACATATACGTTCAGCCAATAGTCACGGTTTCCANNGTTCNNTNTGTAAGTTTCAATTNTACATAGTGCTCTCAGNCCCTGTTATTGNTTTCTTTCA--CTTTATGTANTTTATTTG----CAAA---TTCGT--GTCC-TGANGAAGGGACGGGTCGT-C--CCGAAA-ATT-GA--CA-----ATC----------TA-A-TTGTTC----GTGTCGTTGGCC-A-T-TCTAG--------ATAGTGCTT
Reference ( gi|1 ) : CTATGAATACCAACAA-ACTTCAA---TTATCAAAAT-------TGTC---GGA--TCTATTTGATAGATGCAAAGATCAGA-------TATGAA---A----TC--AT--AT-AAGCACATATCTAGAATGACAGA----CGACA-CGA-CAA--AA---ATT------GTCAAAT-TT-CGG-TTACGACCTG-----TCC-CTTCTTTCCA--GGACAATTTTTGGTTACAAGAATACATAGAGATTGAAAAAAAAAAAAAAAAAAAAAATCT-AAACCACTATATTCGTA-CACTAC--TGGAAAAC----GAGGGA--GTAT-TAT-TACTGTTACA-TATTACAA------TGTGAAACAGTTACATGA---GAAACATAGTTTAACGTAATTGGAT---CAAACCAATGAC-AACTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGAC-----CGT---AT--ATA-CTAC-----CCATCGTTTCCTG-GTA-G----AATT------AGTGTT---AGTTTTTTTTGTTGTTTTTTTTCATGCTTCATGTATTTTCTTTAACCATAAA---TTCGT--G-CC-TGAAGAAGGGACAGGTCGT-C--TCGAAATATT--A--CA-----ATT----------TA-A-TTGTTC----GTGTCGTTGGTC-A-T-TCTAG--------ATAGTGCTT
gi|11 : TATAAAAACCAACAACACT-CAA---C---CAACATCGCCAGGTGTC---GGA--TCTA-ATGAAAGATGC-AAGGTCAAA--------ATCAAAAGA----TT--AT--ATAAAGCA-----CTAAAATGACCAA----CGAC
gi|2 : taACCAACAACACT-CAA---CCATC------------TGTCCTAGGT--TCGGTCTAATGAAAAGGAAGGTCAAA--------ATCAA---AAGCATT--AT--AT-AAG-ACA---CTAAAA-GACCAA----CGACA-C----AT--AA---GTTATACAAGTCAAAT-TTTCGGAGGACGACCTG-----TCC-CTTCTT--CAGGGGACGAATTATGGTTAGAAAA--ACATAGAAAATG-------AAAAAAACCAATGAATCTGAGAACACTAAATTCTTACCACTACGATGAATAACTATTGATTGAACGTATATGTCTACAGTTACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACAC
gi|5 : ttttcaaacatatatatataatatataaatcacgataaACCAACAACAGCTCAACACTCGCCAGG---------TGTC---GGAACTCTAATGAAAAGA-GCAAGG-TCAAAATTCATTTAAAAA---A----GT--ATTAATGAAGCACAAAT------TGGCCAA----CGACAGCTA-TTA--AA------------GTCAAAT-TT-CCA-GTACGACTTG-----TCC-CTTCTttacc
gi|12 : aattcgtctgGATGCAA-TATAAGAA------TATTTA---A----TTCGAT--A--AAGCAC-TAT----AATGACGAA----GGACAGTAA-CAATCAA---ATT------GTCTAAT-TT-T------CGAGATGTTTAATCC-CTTCCT--CA--GAACAActagtc
gi|6 : A---A----TC--AG--A--AAGCTT-TAGCTAGAATGACCTG----CGACACCAA-CAA--TATGGATT------GTCGAATGTT-CGG--GAAAACCCG-----TTC-CTTC
gi|10 : tttttttaattatgaccttttATATATAGA--GATAGAACAATGATG-CGAACAATTAG---ATT------GTCAAAT-TT-TCG-AGACGACCTG-----TCCGCT------CA--AGACAAaaatacactatactgatgttgttttattt
gi|16 : ttagctacatgtatcttatgtcaaagttttcgtTACA-TA---CAA------TGTGAAACAGTTACATGA---GAAACA
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : CTGTT--ACAGTGTAAC-TGTAG-ACATATACGTTCAATCAATAGTTAT-----TCATCGT--AGTG-GTAAG----AATTT-----AGTGTTCTCAGATTC----ATTGGTTTTTTTCATTTTCTATGT-TTTTCT--AACCATAA----TTCGT--C-CCCTGAAGAAGGGACAGGTCGT-CCTCCGAAA-ATT--T--GA-----CTTGTA-------TA-ACTTAT------GTGTCGTTGGTC---T-TTTAGTGTCTTATATAATGCTTca
gi|3 : ttttcaaacatatatatataatatataaatcacgataaaccaacaacactcaaccatctgtcctaggttcggtctaatgaaaaggaaggtcaaaatcaaTGTAGTAC-----TGT---GC--ATA-TCACGGTTTCCAAAGTTCCCTTTGTA-GTTTCAATTGTACATAGTGCT---AGTCCTTGTT-TTGTTTTCTTTCA--CTTTATGTAATTTATTTG-----------TTTGT--GTCC-TGATAAAGGAACTGGCTGT-T--TCGAAA-ATTTGA--CAGTACCATC----------AA-A-TTGTTC----GTGTCGTTGGCC-T-T-Tcctcactactaaaaaatcaagtaagaggaaactaaaatagcgtgaaggtgtccaaaccaatgacaaacctaacacttacc
gi|7 : ctcTTTCTCTCA--CTTTATGTAATTCATTTG-----------TTTGT--GTCC-TGATGAAGGAACTGGGTGT-T--CCGAAA-ATTTGA--CA-----AATGAATATCAACTA-A-TTGTTC----GTGTCGTTGACC-ATT-TCTAG--------gtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|10 : GCTACATGTATCTTATGT-----CAAAGTTTTCGTTTG-TC-TTGAGC--GGACAGGTCGT-C--TCGAAA-ATTTGA--CA-----ATC----------TA-A-TTGTTC----GCATCATTGTTCTA-TCTCTAT--------ATAtg
gi|5 : ttaAA---TTCGT-----C-TGA-GAAGGGACAAGTCGTAC--TGGAAATTTG--A--C-------TT----------TA-A-TAGC-------TGTCGTTGGCC-A-A-TTT-------------GTGCTTt
gi|12 : C-TGAGGAAGGGATTAAACAT-C--TCGAAA-ATT--AGACA-----ATT----------TG-A-TTGTTA----CTGTCCTTCGTC-A-T-T------------ATAGTGCTTcattaatacttttttaaatgaattttgaccttgctcttttcattagagttccgacacctggcgagtgttgagctgttgttggtctagtc
gi|4 : ttgttAAGAAGGGGCGGGTTGC-C--CCGAAA-ATT--G--AG-----GTT----------TA-A-ATAACCAACAGTGTCGGTGGCCTA-T-T-------------TAGTGCTTtatcgaattaaatattcttatattgcatc
gi|6 : taacagcacaaaaatccaacaacatcctactacttcaaaaacgtgtcggatcctgaaaaagatgcaaggcccaattcaatttatatacGAAGGAACGGGTTTT-C--CCGAA-CATTCGA--CA-----ATC----------CATA-TTGTTG----GTGTCGCAGGTC-A-T-TCTAG--------CTAAAGCTTggcgggagaaaagggaatcaacatcgtcggaaaaa
gi|13 : tttttttaattatgacctttt--A--CA-----ATC----------TA-A-TTGTTT----GTGTCGTTGGTC-A-T-TTTAG--------Atctgattaaatacactatactgatgttgttttattt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GTCGGATCTGAAAAGATGCAAGGCCAATTCACGAAATAGGCCACGGCACTGTGGGTTATTTAAACCTCAAATCTTCTGGAGAAAAGGGAATCACATAGGAGGAAAAAAG
Unaligned ( gi|9 ): CATTCAAAAGGCCACGACACTGGTGGTTTTTTAAACCTCAAAACATTTTCAGGACAACTCGCTCCTTCGTCTGGAGAAAAGGGAATTACATGCGAGTAAAAAAGGGGA
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 2222222222222222222222222222222
lowQualScore : 7777777777777777777777777777 33333333 1111 2 333333333333333333333 22 55555555 55555555555555555555555555555555 111 11 33 4444444 1 1 11 2222 11 1 1 1 222222 222 1 22 222 1 4444444444444444444444444444444444444444444444444 2 1 222 2222222222222222222222222222222 11 6666666666666666666666666 2 11 666666666666 11 1 2 11111 222222222
lowQualScore : 1 6 6 6 1111111111111111111111111111 77 44444444 2222 0 5 66 111111111111111111111 66 66 11 2 22222222 55 55555555555555555555555555555555 3 0 000 2 6 88 99 6 7 3 66 7 4 3333333 6 4 5 3 4 3 5 88 4 4444 66 88 5 5 4 5 4 888888 2 1 2 000 5 88 77 000 5 9999999999999999999999999999999999999999999999999 0 5 1 999 3 4444444444444444444444444444444 22 22 66 9999999999999999999999999 1 6 2 3 1 88 1 1 999999999999 6 99 3 1 00 3 0 6 3 0 5 44444 222222222 5 2 5 1
lowQualScore : . . . . ............................ .. ........ .... . . .. ..................... .. .. .. . ........ .. ................................ . . ... . . .. .. . . . .. . . ....... . . . . . . . .. . .... .. .. . . . . . ...... . . . ... . .. .. ... . ................................................. . . . ... . ............................... .. .. .. ......................... . . . . . .. . . ............ . .. . . .. . . . . . . ..... ......... . . . .
lowQualScore : 2 7 7 7 1111111111111111111111111111 99 00000000 1111 8 1 33 000000000000000000000 99 99 99 5 00000000 44 99999999999999999999999999999999 5 7 222 2 0 33 22 7 3 7 77 3 7 3333333 7 0 0 0 0 0 0 00 0 5555 00 00 5 0 0 0 0 555555 5 0 5 555 5 00 55 555 5 0000000000000000000000000000000000000000000000000 0 0 0 000 0 5555555555555555555555555555555 00 00 55 5555555555555555555555555 0 0 5 0 0 33 0 0 000000000000 4 22 5 0 33 7 7 7 3 0 7 33333 999999999 7 7 7 0
consensus : NTATAAAAA-CCAACAACA-CT-CAAC------CGC--CA-----G---T-----GTCGGA--TCTA-A----T-AAA----AGATGC-AAGGCCA-AAAT--ATC----AA---A----TT--AT--ATG-AAGCACATATCTAAAAT-GACCAACGACA-CGA-CAA-T--AA----ATT------G----TCAAATTTTCGG--GACGACCCGTCCCTTCTT--CAGG--ACG-AATTATGGTTANAAAA-TACATAGAAANTG-------AAAAAAAACAANGAATCTGAGANCACTANATTCNTACCACTACGATGGANAACTATTGANNGAACGTATATGTCTACNGTTACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGC---------ATA-TCACGGTTTCCANNGTTCCCTNTGTAGGTTTCAATTGTACATAGTGCT-TTAGTCCTTNTTGTTGTTTTCTTTCA--CTTTATGTANTTTATTT----G-AAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCTCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTCA-TTCTAGATAGTGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT-CAAC------CGC--CA-----G---T-----GTCGGA--TCTA-N----T-AAA----AGATGCGAAGGTCA-AAAT--ATC----AA---A----TT--AT--AT--AAGCACATATCTAGAAT-GACCAACGACAGCGA-CAA-T--AA----ATT------G----TCAAATTTCCGG--GACGACCTGTCCCTTCTT--CAGG--ACG-AATTATGGTTAGAAAA--ACATAGAAAATG-------AAAAAAACCAATGAATCTGAGAACACTAAATTCTTACCACTACGATGAATAACTATTGATTGAACGTATATGTCTACAGTTACACTGTAACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTC-TCATGTAACTGTTTCACANTGTAACATGTAGTAC---ATATACGTTCAGCCAATAGTCACGGTTTCCANNGTTCNNTNTGTAAGTTTCAATTNTACATAGTGCTCTCAGNCCCTGTTATTGNTTTCTTTCA--CTTTATGTANTTTATTT----GCAAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGCCA-TTCTAGATAGTGCTT
gi|1 : TATGAATA-CCAACAA-A-CTTCAAT------TAT--CA-----AAATT-----GTCGGA--TCTATT----T-GAT----AGATGCAAAGATC--AGAT--ATG----AA---A----TC--AT--AT--AAGCACATATCTAGAAT-GACAGACGACA-CGA-CAA----AA----ATT------G----TCAAATTTCGGT--TACGACCTGTCCCTTCTTTCCAGG--ACA-ATTTTTGGTTACAAGAATACATAGAGATTGAAAAAAAAAAAAAAAAAAAAAATCT-AAACCACTATATTCGTA-CACTAC--TGGAAAAC----GAGGGA--GTAT-TAT-TACTGTTACA-TATTACAA------TGTGAAACAGTTACATGA---GAAACATAGTTTAACGTAATTGGAT---CAAACCAATGAC-AACTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTATATAC--------------TAC-----CCATCGTTTCCTG-GTAG-----AAT------TAGTG---TTAGTTTTTTTTGTTGTTTTTTTTCATGCTTCATGTATTTTCTTTAACCATAAA---TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTCA-TTCTAGATAGTGCTT
gi|10 : cATGTATCTTATGT-----CAAAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTG-----TTCTA
gi|11 : ttagctacTATAAAAA-CCAACAACA-CT-CAACCAACATCGC--CAG----G---T-----GTCGGA--TCTA-A----T-GAA----AGATGC-AAGGTCA-AA----ATC----AAAAGA----TT--AT--ATA-AAGCA-----CTAAAAT-GACCAACGACtctctatatat
gi|12 : taGATGC-AATATAA-GAAT--ATT----TA---A----TTCGAT--A---AAGCAC-TAT----AAT-GACGAAGGACAGTAA-CAA-TC-AA----ATT------G----TCTAATTTTCGA--GATGTTTAATCCCTTCCT--CAGA--ACA-A
gi|12 : T--GTTCTGAGGAAGGGAT-TAAACATCTCGAAA-A-TTAGAC-A-----AT---------TTG-ATTGTTACTGTCCTTCGTCA-TT----ATAGTGCTT
gi|13 : tAC-A-----AT---------CTA-ATTGTTTGTGTCGTTGGTCA-TTTTAGAtatcgaattaaatattcttatattgcatc
gi|13 : ATGC-AAGGCCA-AA-C--A-C----AAGA-A----TG--AT--AC--AAA-AC---TCTAAAAT-GACCAACGACACAAA-CAATT--AG----ATT------G----Tgttttgtatcattcttgtgtttggccttgcat
gi|16 : TTTC-TCATGTAACTGTTTCACATTGT---ATGTA
gi|2 : AAA-CCAACAACA-CT-CAAC------CAT--CT-----G---TCCTAGGTTCGG--TCTA-A----TGAAA----AG----GAAGGTCA-AAAT----C----AA---AAGCATT--AT--AT--AAG-ACA---CTAAAA--GACCAACGACA-----CA--T--AA----GTTATACAAG----TCAAATTTTCGGAGGACGACCTGTCCCTTCTT--CAGGGGACG-AATTATGGTTAGAAAA--ACATAGAAAATG-------AAAAAAACCAATGAATCTGAGAACACTAAATTCTTACCACTACGATGAATAACTATTGATTGAACGTATATGTCTACAGTTACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGC---------ATA-TCACGGTTTCCAAAGTTCCCTTTGTA-GTTTCAATTGTACATAGTGCT---AGTCCTTGTT-TTGTTTTCTTTCA--CTTTATGTAATTTATTT----G-------TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCCT-TTttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CT-AGGCAT----CTC--AA-----G---T-----GTCGGA--TCTA-AAGCAT-AGATCTAGGACG-GACGGCCAGAAAA--AGC----GA---A----CT--AT--ATG-AAACGCACAC----AAA-GGCCAACGACA-CGAACAA-TTTGATGGTACT------G----TCAAATTTTCGA--AACAGCCAGTTCCTTTAT--CAGG--ACACAAACA-----AATAAATTACAT--AAAGTG-------AAAGAAAACAAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctctgtagtactgtgcatatcacggtttccaaagttccctttgtagtttcaattgtacatagtgctagtccttgttACAAAAATCCAACAACA-TC-CTAC------TACTTCAAAAACG---T-----GTCGGA--TCCT-G----A-AAA----AGATGC-AAGGCC--CAAT---TC----AA---T----TT--AT--ATACAAGCAC-TA-----AATAGGCCACCGACACTGT-TGG-T--TA----TTT------AAACCTC-AATTTTCGG--GGCAACCCGCCCCTTCTTGGCGGG--A-G-AAttt
gi|5 : taacagcAGA-CCAACAACAGCT-CAACACT---CGC--CA-----GG--T-----GTCGGAACTCTA-A----TGAAA----AGA-GC-AAGGTCA-AAATTCATTTAAAAA---A----GT--ATTAATG-AAGCACAAAT------T-GGCCAACGACAGCTA-T---T--AA----A--------G----TCAAATTTCCAG--TACGACTTGTCCCTTC-T--CA-G--ACG-AATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTTTT-------AA---TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTCA-TTCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTTTATGTAATTCATTT----G-------TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACCATTTCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : -----GTCGGA--TCTG--------AAA----AGATGC-AAGGCCA-Atg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CATTCAAAAGGCCACGACACTGGTGGTTTTTTAAACCTCAAAACATTTTCAGGACAACTCGCTCCTTCGTCTGGAGAAAAGGGAATTACATGCGAGTAAAAAAGGGGA
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 7777777777777777777777777777777 2222222222222 333333333333333333333 11 333333 55555555555555555555555555555555 1111 11 11 1 2222 1 1 55555555555555 1111111 1 3333333333333 1 22 11 1 222222 222 1 11 222 1 1 1 222 333333333 22222 11 444444444444444 444 1 11 555555555555 11 1 2 11111 222222222
lowQualScore : 1 6 6 6 1111111111111111111111111111111 77 5 9999999999999 0 4 111111111111111111111 66 55 666666 6 33333333333333333333333333333333 3 1 6666 6 6 88 88 7 1 3 7 8888 4 3 1 66666666666666 1 1 9999999 2 88 6666666666666 3 7 22 1 88 5 1 888888 2 1 2 000 5 22 88 000 5 5 5 111 1 777777777 66666 22 66 444444444444444 555 1 5 88 1 1 888888888888 6 99 3 1 00 3 6 3 0 5 44444 222222222 5 666 5 1
lowQualScore : . . . . ............................... .. . ............. . . ..................... .. .. ...... . ................................ . . .... . . .. .. . . . . .... . . . .............. . . ....... . .. ............. . . .. . .. . . ...... . . . ... . .. .. ... . . . ... . ......... ..... .. .. ............... ... . . .. . . ............ . .. . . .. . . . . . ..... ......... . ... . .
lowQualScore : 2 7 7 7 1111111111111111111111111111111 99 7 4444444444444 8 4 000000000000000000000 99 55 666666 5 44444444444444444444444444444444 5 7 8888 3 0 33 33 3 0 3 3 3333 0 3 0 77777777777777 0 0 7777777 0 33 0000000000000 3 3 33 0 33 0 0 555555 5 0 5 555 5 00 55 555 5 5 0 555 0 555555555 55555 00 55 000000000000000 555 0 0 33 0 0 888888888888 4 22 5 0 33 7 7 3 0 7 33333 999999999 7 111 7 0
consensus : NTATAAAAA-CCAACAACA-CT-CAAC---C------GC--CA-----GG--T-----GTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AAGCACA-ATCTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACGAATTATGGTTANAA-AATACATA----GAAA-TGAAAA-AAAACAANGAA-------TCTGA-ANCACTATATTC--TTAC-ACTACGATGGANAACT-TTGA--GAA--CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGGTTTCAATTGTACATAGTGC-TTAGTCCTTNTTGTTGTTTTCTTTCA--CTTTATGTANTTTATTTG-----AAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCTCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT-CAAC---C------GC--CA-----G---T-----GTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATG-AAGCACATATCTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACGAATTATGGTTANAA-AATACATA----GAAANTGAAAA-AAAACAANGAA-------TCTGAGANCACTANATTC--NTACCACTACGATGGANAACTATTGANNGAA--CGT-ATATGTCTACNGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATATCACGGTTTCCANNGTTCCCTNTGTAGGTTTCAATTGTACATAGTGCTTTAGTCCTTNTTGTTGTTTTCTTTCA--CTTTATGTANTTTATTTG-----AAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCTCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|1 : TATGAATA-CCAACAA-A-CTTCAAT---T------AT--CA-----AAATT-----GTCGGA--TC-TAT----T-TGAT---AGATGCAAAGATC-AGAT--ATG----AA---A----TCAT--AT--AAGCACATATCTAGAATGACAGACGACA-C----GA-CAA-----AA----ATT------GTCAAATTT-CGG--TTACGACCTGTCCCTTCTTTCCAGG--ACAATTTTTGGTTACAAGAATACATA----GAGATTGAAAA-AAAAAAAAAAAAAAAAAATCTAA-ACCACTATATTC--GTAC-ACTAC--TGGAAAAC----GAGGGA----GT-AT-TAT-TACTGT--TACA-TATTACAA------TGTGAAACAGTTACATGAGA---AACATAGTTTAACGTAATTGGAT---CAAACCAATGACAA-CTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTAT----ATACTAC-----CCATCGTTTCCTG-GTAG-----AAT------TAGTG--TTAGTTTTTTTTGTTGTTTTTTTTCATGCTTCATGTATTTTCTTTAACCATAAA---TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|10 : cATGTATCTTATGTC-----AAAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTGTTCTA-TCTCTATATA
gi|11 : ttagctacTATAAAAA-CCAACAACA-CT-CAAC---CAACATCGC--CA-----GG--T-----GTCGGA--TC-TAA----T-GAA----AGATGCAAGGTCA-AA----ATC----AAAAGA----TTAT--ATA-AAGCA-----CTAAAATGACCAACGACt
gi|12 : taGATGCAATATAA-GAAT--ATT----TA---A----TTCG--ATA-AAGCAC-TAT----AATGACGAAGGACAGT----AA-CAA--TC-AA----ATT------GTCTAATTTTCGA--G-ATGTTTAATCCCTTCCT--CAGA--ACAA
gi|12 : T--GTTCTGAGGAAGGGAT-TAAACATCTCGAAA-A-TTAGAC-A-----AT---------TTG-ATTGTTACTGTCCTTCGTC-A-T-T----ATAGTGCTT
gi|13 : tAC-A-----AT---------CTA-ATTGTTTGTGTCGTTGGTC-A-T-TTTAGAtatcgaattaaatattcttatattgcatc
gi|13 : ATGCAAGGCCA-AA-C--A-C----AAGA-A----TGAT--ACA-AAAC-----TCTAAAATGACCAACGACA-CA---AA-CAAT-T--AG----ATT------GTgttttgtatcattcttgtgtttggccttgcat
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : AAA-CCAACAACA-CT-CAAC---C------AT--CT-----G---TCCTAGGTTCGG--TC-TAA----T-GAA----AA--GGAAGGTCA-AAAT----C----AA---AAGCATTAT--AT--AAG-ACA---CTAAAA-GACCAACGACA-C---------A--T--AA----GTTATACAAGTCAAATTTTCGGAGG-ACGACCTGTCCCTTCTT--CAGGGGACGAATTATGGTTAGAA-AA-ACATA----GAAAATGAAAA-AAACCAATGAA-------TCTGAGAACACTAAATTC--TTACCACTACGATGAATAACTATTGATTGAA--CGT-ATATGTCTACAGT--TACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGCATATCACGGTTTCCAAAGTTCCCTTTGTA-GTTTCAATTGTACATAGTGC--TAGTCCTTGTT-TTGTTTTCTTTCA--CTTTATGTAATTTATTTG-----------TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCC-T-T-Tttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CT-AGGCAT-C------TC--AA-----G---T-----GTCGGA--TC-TAAAGCAT-AGATCTAGGACGGACGGCCAGAAAA--AGC----GA---A----CTAT--ATG-AAACGCACAC---AAA-GGCCAACGACA-C----GAACAA--TTTGATGGTACT------GTCAAATTTTCGA--A-ACAGCCAGTTCCTTTAT--CAGGACACAAACAA-----ATAA-ATTACATAAAGTGAAA--GAAAACAAAACAAGGA---------CT---AGCACTATGTACAATTGAAACTACAAAGG-GAACT-TTG---GAAACCGTGATATG--CACAGTACTACAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctcACAAAAATCCAACAACA-TC-CTAC---T------ACTTCAAAAACG---T-----GTCGGA--TCCTGA------AAA----AGATGCAAGGCC--CAAT---TC----AA---T----TTAT--ATACAAGCA-----CTAAATAGGCCACCGACA-CTGTTGG-TTATTT--AA----ACC-------TC-AATTTTCGG--G-GCAACCCGCCCCTTCTTGGCGGG--A-GAAttt
gi|5 : taacagcAGA-CCAACAACAGCT-CAACACTC------GC--CA-----GG--T-----GTCGGAACTC-TAA----TGAAA----AGA-GCAAGGTCA-AAATTCATTTAAAAA---A----GTATTAATG-AAGCACAAAT------TGGCCAACGACA------GC-TAT--T--AA----A--------GTCAAATTTCCAG--T-ACGACTTGTCCCTTC-T--CA-G--ACGAATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTTTT-------AA---TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTC-A-T-TCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTTTATGTAATTCATTTG-----------TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACC-ATT-TCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : -----GTCGGA--TC-TGA-------AA----AGATGCAAGGCCA-Atg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CATTCAAAAGGCCACGACACTGGTGGTTTTTTAAACCTCAAAACATTTTCAGGACAACTCGCTCCTTCGTCTGGAGAAAAGGGAATTACATGCGAGTAAAAAAGGGGA
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 111 555555555555555555555555555555 2222222222222 333333333333333333333 444444 55555555555555555555555555555555 1111 11 11 1 2222 6666666666 1 222 22222222 1 222222222222 1 22 11 1 222222 222 1 11 222 1 1 1 222 333333333 22222 11 55555555555555 222 1 11 555555555555 11 1 2 11111 222222222
lowQualScore : 1 6 6 888 888888888888888888888888888888 77 5 9999999999999 0 4 111111111111111111111 66 5 66 333333 77 33333333333333333333333333333333 3 1 6666 6 6 88 88 7 1 3 7 8888 9999999999 3 1 7 444 1 44444444 2 88 333333333333 3 7 00 88 5 1 888888 2 1 2 000 5 22 88 000 5 5 5 111 1 777777777 66666 22 66 44444444444444 111 1 5 88 1 1 888888888888 6 99 3 1 00 3 6 3 0 5 44444 222222222 5 666 5 1
lowQualScore : . . . ... .............................. .. . ............. . . ..................... .. . .. ...... .. ................................ . . .... . . .. .. . . . . .... .......... . . . ... . ........ . .. ............ . . .. .. . . ...... . . . ... . .. .. ... . . . ... . ......... ..... .. .. .............. ... . . .. . . ............ . .. . . .. . . . . . ..... ......... . ... . .
lowQualScore : 2 7 7 333 000000000000000000000000000000 99 7 4444444444444 8 4 000000000000000000000 99 0 99 999999 00 44444444444444444444444444444444 5 7 8888 3 0 33 33 3 0 3 3 3333 0000000000 3 0 3 333 0 33333333 0 33 777777777777 3 3 77 33 0 0 555555 5 0 5 555 5 00 55 555 5 5 0 555 0 555555555 55555 00 55 00000000000000 555 0 0 33 0 0 888888888888 4 22 5 0 33 7 7 3 0 7 33333 999999999 7 111 7 0
consensus : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCAC--ATCTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACGAATTATGGTTANAA-AATACATA----GAAA-T--------GAAAA-AAAACAANGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAG-TTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTTTATGTANTTTATTTG-----AAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCTCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCACA-ATCTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACGAATTATGGTTANAA-AATACATA----GAAA-T--------GAAAA-AAAACAANGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTTTATGTANTTTATTTG-----AAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCTCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|1 : TATGAATA-CCAACAA-A-CTT--CAAT---T------AT--C------AA----AATTGTCGGA--TC-TAT----T-TGAT---AGATGCAAAGATC-AGAT--ATG----AA---A----TCAT--ATA-A---GCACATATCTAGAATGACAGACGACA-C----GA-CAA-----AA----ATT------GTCAAATTT-CGG--TTACGACCTGTCCCTTCTTTCCAGG--ACAATTTTTGGTTACAAGAATACATA----GAGA-TTGAAAAAAAAAAA-AAAAAAAAAAATCTAA-ACCACTATATTC--GT-AC-ACTAC--TGGAAAAC----GA--GGG-AGT-AT-TAT-TACTGT--TACA-TATTACAA------TGTGAAACAGTTACATGAGA---AACATAGTTTAACGTAATTGGAT---CAAACCAATGACAA-CTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTAT----ATACTAC-----CCATCGTTTCCTG-GTAG-----AAT------TAGTG-TTAGTTTTTTTTGTTGTTTTTTTTCATGCTTCATGTATTTTCTTTAACCATAAA---TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|10 : cATGTATCTTATGTC-----AAAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTGTTCTA-TCTCTATATA
gi|11 : ttagctacTATAAAAA-CCAACAACA-CT---CAAC---CAACATCGC--C------AG----G--TGTCGGA--TC-TAA----T-GAA----AGATGCAAGGTCA-AA----ATC----AAAAGA----TTAT--ATA-AA--GCA-----CTAAAATGACCAACGACt
gi|12 : taGATGCAATATAA-GAAT--ATT----TA---A----TTCG--ATA-AA--GCACT-AT----AATGACGAAGGACAGT----AA-CAA--TC-AA----ATT------GTCTAATTTTCGA--G-ATGTTTAATCCCTTCCT--CAGA--ACAA
gi|12 : T--GTTCTGAGGAAGGGAT-TAAACATCTCGAAA-A-TTAGAC-A-----AT---------TTG-ATTGTTACTGTCCTTCGTC-A-T-T----ATAGTGCTT
gi|13 : tAC-A-----AT---------CTA-ATTGTTTGTGTCGTTGGTC-A-T-TTTAGAtatcgaattaaatattcttatattgcatc
gi|13 : ATGCAAGGCCA-AA-C--A-C----AAGA-A----TGAT--ACA-AA--AC-----TCTAAAATGACCAACGACA-CA---AA-CAAT-T--AG----ATT------GTgttttgtatcattcttgtgtttggccttgcat
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : AAA-CCAACAACA-CT---CAAC---C------AT--CTGTCCTAG----G--T-TCGG---TC-TAA----T-GAA----AA--GGAAGGTCA-AAAT----C----AA---AAGCATTAT--ATA-AG--ACAC-----TAAAA-GACCAACGACA-C---------A--T--AA----GTTATACAAGTCAAATTTTCGGAGG-ACGACCTGTCCCTTCTT--CAGGGGACGAATTATGGTTAGAA-AA-ACATA----GAAAAT--------GAAAA-AAACCAATGAATCTGAGAACACTAAATTC--TT-ACCACTACGATGAATAACTATTGATTGAA-CGT-ATATGTCTACAGT--TACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGCATATCACGGTTTCCAAAGTTCCCTTTGTAG-TTTCAATTGTACATAGTGCT-AGTCCTTGTT-TTGTTTTCTTTCA--CTTTATGTAATTTATTTG-----------TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCC-T-T-Tttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CTAGGCATC---T----------C------AA----G--TGTCGGA--TC-TAAAGCAT-AGATCTAGGACGGACGGCCAGAAAA--AGC----GA---A----CTAT--ATG-AAACGCACA----CAAA--GGCCAACGACA-C----GAACAA--TTTGATGGTACT------GTCAAATTTTCGA--A-ACAGCCAGTTCCTTTAT--CAGGACACAAACAA-----ATAA-ATTACATAAAGTGAAA----------GAAAACAAAACAAGGA--CT---AGCACTATGTACAATTGAA-ACTACAAAGG-GAACT-TTGG--AAACCGTGATATG--CACAGTACTACAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctcACAAAAATCCAACAACA-TC---CTAC---T------ACTTC------AAAAACG--TGTCGGA--TCCTGA------AAA----AGATGCAAGGCC--CAAT---TC----AA---T----TTAT--ATACAA--GCA-----CTAAATAGGCCACCGACA-CTGTTGG-TTATTT--AA----ACC-------TC-AATTTTCGG--G-GCAACCCGCCCCTTCTTGGCGGG--A-GAAttt
gi|5 : taacagcAGA-CCAACAACAGCT---CAACACTC------GC--C------AG----G--TGTCGGAACTC-TAA----TGAAA----AGA-GCAAGGTCA-AAATTCATTTAAAAA---A----GTATTAATG-AA--GCACA-A-----ATTGGCCAACGACA------GC-TAT--T--AA----A--------GTCAAATTTCCAG--T-ACGACTTGTCCCTTC-T--CA-G--ACGAATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTTTT-------AA---TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTC-A-T-TCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTTTATGTAATTCATTTG-----------TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACC-ATT-TCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : GTCGGA--TC-TGA-------AA----AGATGCAAGGCCA-Atg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CATTCAAAAGGCCACGACACTGGTGGTTTTTTAAACCTCAAAACATTTTCAGGACAACTCGCTCCTTCGTCTGGAGAAAAGGGAATTACATGCGAGTAAAAAAGGGGA
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 111 555555555555555555555555555555 2222222222222 333333333333333333333 333333 55555555555555555555555555555555 1111 11 11 1 2222 6666666666 1 222 22222222 1 222222222222 1 22 11 1 222222 222 1 11 222 1 1 1 222 333333333 22222 11 2222 222222 33 1 11 1 666666666666 1 2 11111 222222222
lowQualScore : 1 6 6 888 888888888888888888888888888888 77 5 9999999999999 0 4 111111111111111111111 66 5 888888 77 33333333333333333333333333333333 3 1 6666 6 6 88 88 7 1 3 7 8888 9999999999 3 1 7 444 1 44444444 2 88 333333333333 3 7 00 88 5 1 888888 2 1 2 000 5 22 88 000 5 5 5 111 1 777777777 66666 22 66 4444 999999 00 1 5 33 0 1 3 333333333333 44 77 1 1 77 4 5 1 0 5 44444 222222222 5 666 5 1
lowQualScore : . . . ... .............................. .. . ............. . . ..................... .. . ...... .. ................................ . . .... . . .. .. . . . . .... .......... . . . ... . ........ . .. ............ . . .. .. . . ...... . . . ... . .. .. ... . . . ... . ......... ..... .. .. .... ...... .. . . .. . . . ............ .. .. . . .. . . . . . ..... ......... . ... . .
lowQualScore : 2 7 7 333 000000000000000000000000000000 99 7 4444444444444 8 4 000000000000000000000 99 0 222222 00 44444444444444444444444444444444 5 7 8888 3 0 33 33 3 0 3 3 3333 0000000000 3 0 3 333 0 33333333 0 33 777777777777 3 3 77 33 0 0 555555 5 0 5 555 5 00 55 555 5 5 0 555 0 555555555 55555 00 55 0000 555555 55 0 0 88 0 0 3 222222222222 77 99 7 0 44 0 7 4 0 7 33333 999999999 7 111 7 0
consensus : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AAGCACA---CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACGAATTATGGTTANAA-AATACATA----GAAA-T--------GAAAA-AAAACAANGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTTTG------AA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AAGCACAT--CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACGAATTATGGTTANAA-AATACATA----GAAA-T--------GAAAA-AAAACAANGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-TATGTANTTTATTTG-----AAA---TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCTCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|1 : TATGAATA-CCAACAA-A-CTT--CAAT---T------AT--C------AA----AATTGTCGGA--TC-TAT----T-TGAT---AGATGCAAAGATC-AGAT--ATG----AA---A----TCAT--ATA-A-GCACATATCTAGAATGACAGACGACA-C----GA-CAA-----AA----ATT------GTCAAATTT-CGG--TTACGACCTGTCCCTTCTTTCCAGG--ACAATTTTTGGTTACAAGAATACATA----GAGA-TTGAAAAAAAAAAA-AAAAAAAAAAATCTAA-ACCACTATATTC--GT-AC-ACTAC--TGGAAAAC----GA--GGG-AGT-AT-TAT-TACTGT--TACA-TATTACAA------TGTGAAACAGTTACATGAGA---AACATAGTTTAACGTAATTGGAT---CAAACCAATGACAA-CTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTAT----ATACTAC-----CCATCGTTTCCTG-GTAG----AAT------TAGTG-TTAGTTTTTTTTGTTGTTTTTTTTCATGCTT-CATGTATTTTCTTTAACCATAAA---TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|10 : cATGTATCTTATGTC-----AAAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTGTTCTA-TCTCTATATA
gi|11 : ttagctacTATAAAAA-CCAACAACA-CT---CAAC---CAACATCGC--C------AG----G--TGTCGGA--TC-TAA----T-GAA----AGATGCAAGGTCA-AA----ATC----AAAAGA----TTAT--ATA-AAGCA-----CTAAAATGACCAACGACt
gi|12 : taGATGCAATATAA-GAAT--ATT----TA---A----TTCG--ATA-AAGCAC-----TATAATGACGAAGGACAGT----AA-CAA--TC-AA----ATT------GTCTAATTTTCGA--G-ATGTTTAATCCCTTCCT--CAGA--ACAA
gi|12 : T--GTTCTGAGGAAGGGAT-TAAACATCTCGAAA-A-TTAGAC-A-----AT---------TTG-ATTGTTACTGTCCTTCGTC-A-T-T----ATAGTGCTT
gi|13 : tAC-A-----AT---------CTA-ATTGTTTGTGTCGTTGGTC-A-T-TTTAGAtatcgaattaaatattcttatattgcatc
gi|13 : ATGCAAGGCCA-AA-C--A-C----AAGA-A----TGAT--ACA-AAAC---T--CTAAAATGACCAACGACA-CA---AA-CAAT-T--AG----ATT------GTgttttgtatcattcttgtgtttggccttgcat
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : AAA-CCAACAACA-CT---CAAC---C------AT--CTGTCCTAG----G--T-TCGG---TC-TAA----T-GAA----AA--GGAAGGTCA-AAAT----C----AA---AAGCATTAT--ATA-AGACAC-----TAAAA-GACCAACGACA-C---------A--T--AA----GTTATACAAGTCAAATTTTCGGAGG-ACGACCTGTCCCTTCTT--CAGGGGACGAATTATGGTTAGAA-AA-ACATA----GAAAAT--------GAAAA-AAACCAATGAATCTGAGAACACTAAATTC--TT-ACCACTACGATGAATAACTATTGATTGAA-CGT-ATATGTCTACAGT--TACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGCATATCACGGTTTCCAAAGTTCCCTTTGTAGTTTCAATTGTACATAGTGC-TAGTCCTTGTT-TTGTTTTCTTTCA--CTT-TATGTAATTTATTTG-----------TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCC-T-T-Tttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CTAGGCATC---T----------C------AA----G--TGTCGGA--TC-TAAAGCAT-AGATCTAGGACGGACGGCCAGAAAA--AGC----GA---A----CTAT--ATG-AAACGCAC--ACAAA--GGCCAACGACA-C----GAACAA--TTTGATGGTACT------GTCAAATTTTCGA--A-ACAGCCAGTTCCTTTAT--CAGGACACAAACAA-----ATAA-ATTACATAAAGTGAAA----------GAAAACAAAACAAGGA--CT---AGCACTATGTACAATTGAA-ACTACAAAGG-GAACT-TTGG--AAACCGTGATATG--CACAGTACTACAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctcACAAAAATCCAACAACA-TC---CTAC---T------ACTTC------AAAAACG--TGTCGGA--TCCTGA------AAA----AGATGCAAGGCC--CAAT---TC----AA---T----TTAT--ATACAAGCA-----CTAAATAGGCCACCGACA-CTGTTGG-TTATTT--AA----ACC-------TC-AATTTTCGG--G-GCAACCCGCCCCTTCTTGGCGGG--A-GAAttt
gi|5 : taacagcAGA-CCAACAACAGCT---CAACACTC------GC--C------AG----G--TGTCGGAACTC-TAA----TGAAA----AGA-GCAAGGTCA-AAATTCATTTAAAAA---A----GTATTAATG-AAGCACA------AATTGGCCAACGACA------GC-TAT--T--AA----A--------GTCAAATTTCCAG--T-ACGACTTGTCCCTTC-T--CA-G--ACGAATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTTTT-------AA---TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTC-A-T-TCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTT-TATGTAATTCATTTG-----------TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACC-ATT-TCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : GTCGGA--TC-TGA-------AA----AGATGCAAGGCCA-Atg
gi|9 : TTTTTTA--CTCGCATGTAATTCCCTT------------TTC-----TCCAGACGAAGGAGC-GAGTTGTCCTGAAA-A-Tttcacgaaataggccacggcactgtgggttatttaaacctcaaatcttctggagaaaagggaatcacataggaggaaaaaag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 111 555555555555555555555555555555 2222222222222 333333333333333333333 2222 55555555555555555555555555555555 1111 11 1 5555555555 2222 222 22222222 1 222222222222 1 22 11 1 222222 222 1 11 222 1 1 1 222 333333333 22222 11 2222 222222 33 1 11 44444444444444 1 1 11111 222222222
lowQualScore : 1 6 6 888 888888888888888888888888888888 77 5 9999999999999 0 4 111111111111111111111 66 5 4444 888 0 6 33333333333333333333333333333333 3 1 6666 6 6 88 99 99 7 1 3 7 6 2222222222 8888 1 7 444 1 44444444 2 88 333333333333 3 7 00 88 5 1 888888 2 1 2 000 5 22 88 000 5 5 5 111 1 777777777 66666 22 66 4444 999999 00 1 5 11 8 1 1 88888888888888 44 99 3 1 0 6 6 6 3 6 6 66666 666666666 6 888 6 4
lowQualScore : . . . ... .............................. .. . ............. . . ..................... .. . .... ... . . ................................ . . .... . . .. .. .. . . . . . .......... .... . . ... . ........ . .. ............ . . .. .. . . ...... . . . ... . .. .. ... . . . ... . ......... ..... .. .. .... ...... .. . . .. . . . .............. .. .. . . . . . . . . . ..... ......... . ... . .
lowQualScore : 2 7 7 333 000000000000000000000000000000 99 7 4444444444444 8 4 000000000000000000000 99 0 4444 888 1 5 44444444444444444444444444444444 5 7 8888 3 0 33 22 22 3 0 3 3 7 7777777777 3333 0 3 333 0 33333333 0 33 777777777777 3 3 77 33 0 0 555555 5 0 5 555 5 00 55 555 5 5 0 555 0 555555555 55555 00 55 0000 555555 55 0 0 00 0 4 0 00000000000000 77 22 5 0 7 7 3 7 3 0 7 77777 777777777 7 777 7 0
consensus : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCACA---CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTT------TNAA----TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCACA---CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----ANGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTT------TGAA----TTCGT--GTCCTGANGAAGGGAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|1 : TATGAATA-CCAACAA-A-CTT--CAAT---T------AT--C------AA----AATTGTCGGA--TC-TAT----T-TGAT---AGATGCAAAGATC-AGAT--ATG----AA---A----TCAT--ATA-A---GCACATATCTAGAATGACAGACGACA-C----GA-CAA-----AA----ATT------GTCAAATTT-CGG--TTACGACCTGTCCCTTCTTTCCAGG--ACA--ATTTTTGGTTACAAGAATACATAGAGA-TTGAAAAAAAAAAAAAAAAA----AAAAATCTAA-ACCACTATATTC--GT-AC-ACTAC--TGGAAAAC----GA--GGG-AGT-AT-TAT-TACTGT--TACA-TATTACAA------TGTGAAACAGTTACATGAGA---AACATAGTTTAACGTAATTGGAT---CAAACCAATGACAA-CTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTAT----ATACTAC-----CCATCGTTTCCTG-GTAG----AAT------TAGTG-TTAGTTTTTTTTGTTGTTTTTTTTCATGCTT-CATGTATTTTCTTTAACCATAAA----TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|10 : c--CTA-CATGTATCTTATG------TCAAAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTGTTCTA-TCTCTATATA
gi|11 : ttagTATAAAAA-CCAACAACA-CT---CAAC---CAACATCGC--C------AG----G--TGTCGGA--TC-TAA----T-GAA----AGATGCAAGGTCA-AA----ATC----AAAAGA----TTAT--ATA-AA--G--CA---CTAAAATGACCAACGACt
gi|12 : taGATGCAATATAA-GAAT--ATT----TA---A----TTCG--ATA-AA--G--CA---CTATAATGACGAAGGACAGT----AA-CAA--TC-AA----ATT------GTCTAATTTTCGA--G-ATGTTTAATCCCTTCCT--CAGA--ACA--A
gi|13 : AC-A-----AT---------CTA-ATTGTTTGTGTCGTTGGTC-A-T-TTTAGA
gi|13 : ATGCAAGGCCA-AA-C--A-C----AAGA-A----TGAT--ACA-AA----ACT---CTAAAATGACCAACGACA-CA---AA-CAAT-T--AG----ATT------GTgttttgtatcattcttgtgtttggccttgcat
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : AAA-CCAACAACA-CT---CAAC---C------AT--CTGTCCTAG----G--T-TCGG---TC-TAA----T-GAA----AA--GGAAGGTCA-AAAT----C----AA---AAGCATTAT--ATA-AG----ACA---CTAAAA-GACCAACGACA-C---------A--T--AA----GTTATACAAGTCAAATTTTCGGAGG-ACGACCTGTCCCTTCTT--CAGGGGACG--AATTATGGTTAGAA-AA-ACATAGAAAAT--------GAAAAAAACCA----ATGAATCTGAGAACACTAAATTC--TT-ACCACTACGATGAATAACTATTGATTGAA-CGT-ATATGTCTACAGT--TACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGCATATCACGGTTTCCAAAGTTCCCTTTGTAGTTTCAATTGTACATAGTGC-TAGTCCTTGTT-TTGTTTTCTTTCA--CTT-TATGTAATTTATT------TG------TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCC-T-T-Tttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CTAGGCATC---T----------C------AA----G--TGTCGGA--TC-TAAAGCAT-AGATCTAGGACGGACGGCCAGAAAA--AGC----GA---A----CTAT--ATG-AAACGCACA---C--AAA-GGCCAACGACA-C----GAACAA--TTTGATGGTACT------GTCAAATTTTCGA--A-ACAGCCAGTTCCTTTAT--CAGG--ACACAAACAA-----ATAA-ATTACATA-AAG-T--------GAAAGAAAACAAAACAAGGA-CT---AGCACTATGTACAATTGAA-ACTACAAAGG-GAACT-TTGG--AAACCGTGATATG--CACAGTACTACAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctcACAAAAATCCAACAACA-TC---CTAC---T------ACTTC------AAAAACG--TGTCGGA--TCCTGA------AAA----AGATGCAAGGCC--CAAT---TC----AA---T----TTAT--ATACAA--G--CA---CTAAATAGGCCACCGACA-CTGTTGG-TTATTT--AA----ACC-------TC-AATTTTCGG--G-GCAACCCGCCCCTTCTTGGCGGG--A-G--AAttt
gi|5 : taacagcAGA-CCAACAACAGCT---CAACACTC------GC--C------AG----G--TGTCGGAACTC-TAA----TGAAA----AGA-GCAAGGTCA-AAATTCATTTAAAAA---A----GTATTAATG-AA--GCACA------AATTGGCCAACGACA------GC-TAT--T--AA----A--------GTCAAATTTCCAG--T-ACGACTTGTCCCTTC-T--CA-G--ACG--AATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTT------TTAA----TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTC-A-T-TCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTT-TATGTAATTCATT------TG------TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACC-ATT-TCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : GTCGGA--TC-TGA-------AA----AGATGCAAGGCCA-Atg
gi|9 : TTTTTTA--CTCGCATGTAATTCCCT------T-------TTC-----TCCAGACGAAGGAGC-GAGTTGTCCTGAAA-A-Tttcacgaaataggccacggcactgtgggttatttaaacctcaaatcttctggagaaaagggaatcacataggaggaaaaaag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 111 555555555555555555555555555555 2222222222222 333333333333333333333 2222 55555555555555555555555555555555 1111 11 1 5555555555 2222 222 22222222 1 222222222222 1 22 11 1 222222 222 1 11 222 1 1 1 222 333333333 22222 11 2222 222222 33 1 11 44444444444444 1 1 11111 222222222
lowQualScore : 1 6 6 888 888888888888888888888888888888 77 5 9999999999999 0 4 111111111111111111111 66 5 4444 888 0 6 33333333333333333333333333333333 3 1 6666 6 6 88 99 99 7 1 3 7 6 2222222222 8888 7 444 1 44444444 2 88 333333333333 3 7 00 88 5 1 888888 2 1 2 000 5 22 88 000 5 5 5 111 1 777777777 66666 22 66 4444 999999 00 1 5 11 8 1 1 66666666666666 44 99 3 1 6 6 6 3 6 6 66666 666666666 6 888 6 1
lowQualScore : . . . ... .............................. .. . ............. . . ..................... .. . .... ... . . ................................ . . .... . . .. .. .. . . . . . .......... .... . ... . ........ . .. ............ . . .. .. . . ...... . . . ... . .. .. ... . . . ... . ......... ..... .. .. .... ...... .. . . .. . . . .............. .. .. . . . . . . . . ..... ......... . ... . .
lowQualScore : 2 7 7 333 000000000000000000000000000000 99 7 4444444444444 8 4 000000000000000000000 99 0 4444 888 1 5 44444444444444444444444444444444 5 7 8888 3 0 33 22 22 3 0 3 3 7 7777777777 3333 3 333 0 33333333 0 33 777777777777 3 3 77 33 0 0 555555 5 0 5 555 5 00 55 555 5 5 0 555 0 555555555 55555 00 55 0000 555555 55 0 0 00 0 4 0 22222222222222 77 22 5 0 7 3 7 3 0 7 77777 777777777 7 777 7 0
consensus : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCACA---CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTT------TNAA----TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCACA---CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTT------TNAA----TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
gi|1 : TATGAATA-CCAACAA-A-CTT--CAAT---T------AT--C------AA----AATTGTCGGA--TC-TAT----T-TGAT---AGATGCAAAGATC-AGAT--ATG----AA---A----TCAT--ATA-A---GCACATATCTAGAATGACAGACGACA-C----GA-CAA-----AA----ATT------GTCAAATTT-CGG--TTACGACCTGTCCCTTCTTTCCAGG--ACA--ATTTTTGGTTACAAGAATACATAGAGA-TTGAAAAAAAAAAAAAAAAA----AAAAATCTAA-ACCACTATATTC--GT-AC-ACTAC--TGGAAAAC----GA--GGG-AGT-AT-TAT-TACTGT--TACA-TATTACAA------TGTGAAACAGTTACATGAGA---AACATAGTTTAACGTAATTGGAT---CAAACCAATGACAA-CTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTAT----ATACTAC-----CCATCGTTTCCTG-GTAG----AAT------TAGTG-TTAGTTTTTTTTGTTGTTTTTTTTCATGCTT-CATGTATTTTCTTTAACCATAAA----TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|10 : c--CTA-CATGTATCTTATG------TCAAAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTGTTCTA-TCTCTATATA
gi|11 : ttagTATAAAAA-CCAACAACA-CT---CAAC---CAACATCGC--C------AG----G--TGTCGGA--TC-TAA----T-GAA----AGATGCAAGGTCA-AA----ATC----AAAAGA----TTAT--ATA-AA--G--CA---CTAAAATGACCAACGACt
gi|12 : taGATGCAATATAA-GAAT--ATT----TA---A----TTCG--ATA-AA--G--CA---CTATAATGACGAAGGACAGT----AA-CAA--TC-AA----ATT------GTCTAATTTTCGA--G-ATGTTTAATCCCTTCCT--CAGA--ACA--A
gi|13 : AC-A-----AT---------CTA-ATTGTTTGTGTCGTTGGTC-A-T-TTTAGA
gi|13 : ATGCAAGGCCA-AA-C--A-C----AAGA-A----TGAT--ACA-AA----ACT---CTAAAATGACCAACGACA-CA---AA-CAAT-T--AG----ATT------GTgttttgtatcattcttgtgtttggccttgcat
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : AAA-CCAACAACA-CT---CAAC---C------AT--CTGTCCTAG----G--T-TCGG---TC-TAA----T-GAA----AA--GGAAGGTCA-AAAT----C----AA---AAGCATTAT--ATA-AG----ACA---CTAAAA-GACCAACGACA-C---------A--T--AA----GTTATACAAGTCAAATTTTCGGAGG-ACGACCTGTCCCTTCTT--CAGGGGACG--AATTATGGTTAGAA-AA-ACATAGAAAAT--------GAAAAAAACCA----ATGAATCTGAGAACACTAAATTC--TT-ACCACTACGATGAATAACTATTGATTGAA-CGT-ATATGTCTACAGT--TACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGCATATCACGGTTTCCAAAGTTCCCTTTGTAGTTTCAATTGTACATAGTGC-TAGTCCTTGTT-TTGTTTTCTTTCA--CTT-TATGTAATTTATT------TG------TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCC-T-T-Tttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CTAGGCATC---T----------C------AA----G--TGTCGGA--TC-TAAAGCAT-AGATCTAGGACGGACGGCCAGAAAA--AGC----GA---A----CTAT--ATG-AAACGCACA---C--AAA-GGCCAACGACA-C----GAACAA--TTTGATGGTACT------GTCAAATTTTCGA--A-ACAGCCAGTTCCTTTAT--CAGG--ACACAAACAA-----ATAA-ATTACATA-AAG-T--------GAAAGAAAACAAAACAAGGA-CT---AGCACTATGTACAATTGAA-ACTACAAAGG-GAACT-TTGG--AAACCGTGATATG--CACAGTACTACAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctcACAAAAATCCAACAACA-TC---CTAC---T------ACTTC------AAAAACG--TGTCGGA--TCCTGA------AAA----AGATGCAAGGCC--CAAT---TC----AA---T----TTAT--ATACAA--G--CA---CTAAATAGGCCACCGACA-CTGTTGG-TTATTT--AA----ACC-------TC-AATTTTCGG--G-GCAACCCGCCCCTTCTTGGCGGG--A-G--AAttt
gi|5 : taacagcAGA-CCAACAACAGCT---CAACACTC------GC--C------AG----G--TGTCGGAACTC-TAA----TGAAA----AGA-GCAAGGTCA-AAATTCATTTAAAAA---A----GTATTAATG-AA--GCACA------AATTGGCCAACGACA------GC-TAT--T--AA----A--------GTCAAATTTCCAG--T-ACGACTTGTCCCTTC-T--CA-G--ACG--AATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTT------TTAA----TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTC-A-T-TCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTT-TATGTAATTCATT------TG------TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACC-ATT-TCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : GTCGGA--TC-TGA-------AA----AGATGCAAGGCCA-Atg
gi|9 : TTTTTTA--CTCGCATGTAATTCCCT------T-------TTC-----TCCAGACGAAGGAGC-GAGTTGTCCTGAAA-A-Tttcacgaaataggccacggcactgtgggttatttaaacctcaaatcttctggagaaaagggaatcacataggaggaaaaaag
blockSeqs : T T G AGG CAACATCGCCAGG AC C AGCATAGATCTA G ATTCATTTAAAAAA TA C ACGC . T CGAACAATTTGATGGTACT T T AGG A C GG GG CA T G . T G AT AAAC T GAG A AATTGAA G AT TATTGATTGAA G A TC AC C A CCTCAC T A A GGA . AA . GTC A . C . T TGTGC GGTTT AA TT TTTC TGTACA C G . . G T A TCAAAGTT CG TT T G T C . T T A GTACC GAATATCAA T TA C A
blockSeqs : A . . . CATCTGTCCTAGG . . TGAAA . ATCAAAAGCA . . GC . T CTGTTGGTTATTTAAACC A T G T T . . . . T . . . T . . . G TTACC A G TTTGGAAAC . A . . . . A A TTAA TG . T T . T . T C . . . . AT .
blockSeqs : C . . . TACTTCAAAAACG . . TGAA . ATCAAAAGA . . G . T GTAACAATCAAATT A T A A A . . . . . A T TG TG . A T . T . . . . . . . A .
blockSeqs : . . . ACTCGCCAGG . . TGAA . ATATTTAA . . G . A CAAACAATTAGATT A T G C T . . . . . A A TG A . T T . T . . . . . . . T .
blockSeqs : . . . TCAAG . . AAA . CACAAGAA . . G . T CATAAGTTATACAA . C T T . . . . C T C . T C . . . . . . . . A .
blockSeqs : . . AA . AAAGCGAA . . . . . GCTATTAAA
blockSeqs : . ATTCAAT . . . . .
blockSeqs : .
blockSeqCons : *** CANCTNCGCNAGG***************** TGAA********* G*** *** CGAACAATTAAACT****************** G*** ** ** TCAG**********
originalCons : NTATAAAAA-CCAACAACA-CT---CAAC---C------GC--C------AG----G--TGTCGGA--TC-TAA----T-AAA----AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AA--GCACA---CTAAAATGACCAACGACA-C----GA-CAA--T--AA----ATT------GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTT------TNAA----TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
finalCons : NTATAAAAA-CCAACAACA-CT---CAACCANCTNCGCNAGG-----------------TGTCGGA--TC-TAATGAA---------AGATGCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATA-AAG---ACA---CTAAAATGACCAACGACACGAACAATTAAACT------------------GTCAAATTTTCGGG---ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTTTCAG----------TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG
Alignments
lowQualScore : 222222 11 1111111 333333333333333333333 22222 22222222 11111111 1111 11 1 5555555555 2222 222 22222222 1 222222222222 1 22 11 1 222222 222 1 11 222 1 1 1 222 333333333 22222 11 2222 222222 33 1 11 6666666666666 1 1 3333333333333333 111
lowQualScore : 1 6 6 6 3 7 999999 6 77 5 44 5 4444444 4 111111111111111111111 66 33333 888 3 6 33333333 6666 33333333 3 1 6666 6 6 88 99 99 7 1 3 7 6 2222222222 8888 7 444 1 44444444 2 88 333333333333 3 7 00 88 5 1 888888 2 1 2 000 5 22 88 000 5 5 5 111 1 777777777 66666 22 66 4444 999999 00 1 5 11 8 1 1 0000000000000 44 99 3 1 6 6 6 3 6 8 4444444444444444 8 222 8 1
lowQualScore : . . . . . . ...... . .. . .. . ....... . ..................... .. ..... ... . . ........ .... ........ . . .... . . .. .. .. . . . . . .......... .... . ... . ........ . .. ............ . . .. .. . . ...... . . . ... . .. .. ... . . . ... . ......... ..... .. .. .... ...... .. . . .. . . . ............. .. .. . . . . . . . . ................ . ... . .
lowQualScore : 2 7 7 7 7 5 555555 7 99 7 44 7 4444444 4 000000000000000000000 99 44444 888 2 5 33333333 0000 11111111 5 7 8888 3 0 33 22 22 3 0 3 3 7 7777777777 3333 3 333 0 33333333 0 33 777777777777 3 3 77 33 0 0 555555 5 0 5 555 5 00 55 555 5 5 0 555 0 555555555 55555 00 55 0000 555555 55 0 0 00 0 4 0 3333333333333 77 22 5 0 7 3 7 3 0 0 0000000000000000 0 222 0 0
consensus : NTATAAAAA-CCAACAACA-CT-CAACCATCTTCGCNAG-GTGTCGGA--TC-TAAT-GAA-AGAT-------GCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATAAAG---ACA---CTAAAATGACCAACGACAC----GAACAA-TT-AA----ACT-GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTTT---CA---A----TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
Reference ( family-913 ) : NTATAAAAA-CCAACAACA-CT-CAACCANCTNCGCNAG-GTGTCGGA--TC-TAAT-GAA-AGAT-------GCAAGGCCA-AAAT--ATC----AA---A----TTAT--ATAAAG---ACA---CTAAAATGACCAACGACAC----GAACAA-TT-AA----ACT-GTCAAATTTTCGG--G-ACGACCCGTCCCTTCTT--CAGG--ACG--AATTATGGTTANAA-AATACATAGAAA-T--------GAAAAAAAACA----AAGAATCTGA-ANCACTATATTC--TT-AC-ACTACGATGGANAACT-TTGA--GAA-CGT-ATATGT-TACAGT--TACACTGTNACAGCCTCACTGCGAAANAGTCACGTGAGAGGAAACATAGNNTAGCGTGATTGGGTGTCCAAACCAATGACAAACCCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTTCACATTGTAATATGTAGNACCGTATGTGCATACCACGGTTTCCANNGTTCCCTNTGTAGTTTCAATTGTACATAGTGCTTAGTCCTTNTTGTTGTTTTCTTTCA--CTT-CATGTAATTTNTTT---CA---G----TTCGT--GTCCTGANGAAGGAAC-GGGTCGTCCCGAAA-A-TT-GAC-A-----AT---------CTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGNGCTT
gi|1 : TATGAATA-CCAACAA-A-CTTCAATTATC----AAAA-TTGTCGGA--TC-TATTTGAT-AGAT-------GCAAAGATC-AGAT--ATG----AA---A----TCAT--ATAAGC---ACATATCTAGAATGACAGACGACAC----GA-CAA----AA----ATT-GTCAAATTT-CGG--TTACGACCTGTCCCTTCTTTCCAGG--ACA--ATTTTTGGTTACAAGAATACATAGAGA-TTGAAAAAAAAAAAAAAAAA----AAAAATCTAA-ACCACTATATTC--GT-AC-ACTAC--TGGAAAAC----GA--GGG-AGT-AT-TAT-TACTGT--TACA-TATTACAA------TGTGAAACAGTTACATGAGA---AACATAGTTTAACGTAATTGGAT---CAAACCAATGACAA-CTCAACACATCATCTGAATTAGATGCGGTGAGGAGTATAAAACAGTTAAAACATATCTTTCTTCATGTAACTGTTT-ACATTGTAATATGTAGGACCGTAT----ATACTAC-----CCATCGTTTCCTG-GTAG----AATT------AGTG-TTAGTTTTTTTTGTTGTTTTTTTTCATGCTT-CATGTATTTTCTTTAACCATAAA----TTCGT--G-CCTGAAGAAGGGAC-AGGTCGTCTCGAAATA-TT--AC-A-----AT---------TTA-ATTGTTCGTGTCGTTGGTC-A-T-TCTAGATAGTGCTT
gi|10 : c--CTA-CATGTATCTTATGT---CA---AAGTTTTCGTTTGTCTTGAGC---GGAC-AGGTCGTCTCGAAA-A-TTTGAC-A-----AT---------CTA-ATTGTTCGCATCATTGTTCTA-TCTCTATATA
gi|11 : ttagTATAAAAA-CCAACAACA-CT-CAACCAACATCGCCAG-GTGTCGGA--TC-TAAT-GAA-AGAT-------GCAAGGTCA-AA----ATC----AAAAGA----TTAT--ATAAAG----CA---CTAAAATGACCAACGACt
gi|12 : taGAT-------GCAATATAA-GAAT--ATT----TA---A----TTCG--ATAAAG----CA---CTATAATGACGAAGGACAG----TAACAA-TC-AA----ATT-GTCTAATTTTCGA--G-ATGTTTAATCCCTTCCT--CAGA--ACA--A
gi|13 : AT-------GCAAGGCCA-AA-C--A-C----AAGA-A----TGAT--ACAAA----ACT---CTAAAATGACCAACGACAC----AAACAA-TT-AG----ATT-GT
gi|16 : TTTCT-CATGTAACTGTTTCACATTG---TATGTA
gi|2 : AAA-CCAACAACA-CT-CAACCATCTGTCCTAG-GT-TCGG---TC-TAAT-GAA-AA---------GGAAGGTCA-AAAT----C----AA---AAGCATTAT--ATAA-G---ACA---CTAAAA-GACCAACGACAC------ATAAGTT-AT----ACAAGTCAAATTTTCGGAGG-ACGACCTGTCCCTTCTT--CAGGGGACG--AATTATGGTTAGAA-AA-ACATAGAAAAT--------GAAAAAAACCA----ATGAATCTGAGAACACTAAATTC--TT-ACCACTACGATGAATAACTATTGATTGAA-CGT-ATATGTCTACAGT--TACACTGTAACAGCCTCACTACTAAAAAATCAAGTAAGAGGAAAC-TAAAATAGCGTGA--AGGTGTCCAAACCAATGACAAACCTAACACca
gi|3 : ttttcaaacatatatatataatatataaatcacgatTGTAGTAC----TGTGCATATCACGGTTTCCAAAGTTCCCTTTGTAGTTTCAATTGTACATAGTGC-TAGTCCTTGTT-TTGTTTTCTTTCA--CTT-TATGTAATTTATTT--------G----TTTGT--GTCCTGATAAAGGAAC-TGGCTGTTTCGAAA-ATTT-GAC-AGTACCAT---------CAA-ATTGTTCGTGTCGTTGGCC-T-T-Tttacc
gi|3 : ctcTAAAAAAA-TCAACAACA-CT--AGGCATCTC----AA-GTGTCGGA--TC-TAAA-GCATAGATCTAGGACGGACGGCCAGAAAA--AGC----GA---A----CTAT--ATGAAACGCACA---C--AAA-GGCCAACGACAC----GAACAA-TTTGATGGTACT-GTCAAATTTTCGA--A-ACAGCCAGTTCCTTTAT--CAGG--ACACAAACAA-----ATAA-ATTACATA-AAG-T--------GAAAGAAAACAAAACAAGGA-CT---AGCACTATGTACAATTGAA-ACTACAAAGG-GAACT-TTGG--AAACCGTGATATG--CACAGTACTACAgtgtgcgtttcatatagttcgctttttctggccgtccgtcctagatctatgctttagatccgacacttgagatgcctagtgttgttgatttttttattt
gi|4 : ctcACAAAAATCCAACAACA-TC-CTACTA-CTTCAAAAACGTGTCGGA--TCCTGA--AAA-AGAT-------GCAAGGCC--CAAT---TC----AA---T----TTAT--ATACAA---GCA---CTAAATAGGCCACCGACACTGTTGGTTAT-TT-AA----ACC--TC-AATTTTCGG--G-GCAACCCGCCCCTTCTTGGCGGG--A-G--AAttt
gi|5 : taacagcAGA-CCAACAACAGCT-CAAC--ACT-CGCCAG-GTGTCGGAACTC-TAAT-GAA-AAGA-------GCAAGGTCA-AAATTCATTTAAAAA---A----GTATTAATGAAG----CA---C-AAATTGGCCAACGACA-------GCTA-TT-AA----A---GTCAAATTTCCAG--T-ACGACTTGTCCCTTC-T--CA-G--ACG--AATTaagggaatcaacatcgtcggaaaaa
gi|6 : TTTTTT---TA---A----TT-AT--GACCTTTTGAAGGAAC-GGGTTTTCCCGAAC-A-TTCGAC-A-----AT---------CCATATTGTTGGTGTCGCAGGTC-A-T-TCTAGCTAAAGCTTagtc
gi|7 : TTTCTCTCA--CTT-TATGTAATTCATTT--------G----TTTGT--GTCCTGATGAAGGAACTGGGT-GTTCCGAAA-ATTT-GACAA-----ATGAATATCAACTA-ATTGTTCGTGTCGTTGACC-ATT-TCTAGtctgattaaatacactatactgatgttgttttattt
gi|8 : GTCGGA--TC-TGA---AA-AGAT-------GCAAGGCCA-Atg
gi|9 : TTTTTTA--CTCGCATGTAATTCCCTT-------------TTC-----TCCAGACGAAGGAGC-GAGTTGTCCTGAAA-A-Tttcacgaaataggccacggcactgtgggttatttaaacctcaaatcttctggagaaaagggaatcacataggaggaaaaaag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCAAATTTTCGGGTGAAAAGGGAATCACATCGGAGCAAAAAAGG
Unaligned ( gi|15 ): ACAGCACGAAAATCCAACAACATCCTACTTTCAAAACG