lowQualScore : 11111 33333333 222222 11 111 4444444444444444444444444444 1111 5555555555555 2 2222222 111 55555555555555555555555555555555555 111111 222222222222222 1 2222 111 2 111 4444444 33333 444444 11111 11111 1 1111 11 1 1 222222 333333 22 1 2222 1 1111 2
lowQualScore : 11111 4 00000000 5 666666 44 000 6 6 7777777777777777777777777777 5 777 5 5 5 777 2 2222 5 5 5 2222222222222 0 55 4 3333333 0 5 5 000 33333333333333333333333333333333333 666666 777777777777777 6 5 1 2222 8888 000 77 3 6 6 99 6 2 6 111 99 6 99 8 3333333 0 1 77777 2 222222 44444 6 6 6 6 77777 1 88 6 6 3 4444 6 55 6 2 0 0 888888 00 1 999999 3 22 0 4444 8 0 2 333 1 9999 3
lowQualScore : ..... . ........ . ...... .. ... . . ............................ . ... . . . ... . .... . . . ............. . .. . ....... . . . ... ................................... ...... ............... . . . .... .... ... .. . . . .. . . . ... .. . .. . ....... . . ..... . ...... ..... . . . . ..... . .. . . . .... . .. . . . . ...... .. . ...... . .. . .... . . . ... . .... .
lowQualScore : 11111 0 44444444 0 999999 77 000 7 7 6666666666666666666666666666 0 111 0 0 0 444 2 1111 7 0 7 8888888888888 0 55 4 5555555 3 7 7 000 00000000000000000000000000000000000 444444 666666666666666 7 7 4 1111 3333 000 99 3 7 7 22 7 2 7 777 22 7 22 0 0000000 8 0 66666 8 444444 00000 7 7 0 7 55555 8 88 7 7 3 2222 7 88 7 5 0 0 888888 55 2 222222 2 22 0 2222 8 0 5 555 2 3333 7
consensus : TAAGCGTTAGCTG-----CGCTT-TATTGTCG--TTGC--TCAGAG-TATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCT-AGAATCTCA---------------------C-TT---CCGG-A-T-T-AC-CGCC-ACC--TATAGG----CA-GAAT-CTAGAAT-------TCTCCATGTAGCACCA--ATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCGTTTTGCGCGCGGAACGANCTCTNTTGGAAGGTTCAAG------AAA--T--C-CAA-----ACCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACNATTT-TTCT---TTGG--TTAAAG--TACT-AC----AT-ATATACAATGAGATG-CGC-AGAGAAAAC--TTTTAAA--T-ATAGA-AGTA-GCGA-TATCCC-T---TTTTAAAAAAAAT-TATG-AG-AT-TTTG----AAT-TAT--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--A-AATTTGACACGG-TTTGG-AAGTGGTTG-GANCTTTTATTTTAAT-T--AATAT-ACACCCC
Reference ( gi|3 ) : TAAGCGTTAGCTG-----CGCTT-TATTGTCG--T-GC--TCAGAG-TATT------CACTTCCGAGTTACCG---CCACCTATAGGCAG-AATCT-AGAATCTCA---------------------C-TT---CCGG-A-T-T-AC-CGCC-ACC--TATAGG----CA-GAAT-TTAGAAT-----T-TCTCCATGTAG-ACCA--ATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAG------AAA--T--C-CAA-----ACCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGACCTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTACAG--TACT-AC----A--ATATACAATGAGATG-AGCGAGAGGAAACC-TTTTAAA--T-ATAGA-AGTA-GCAA-TATCCC-T---TTTTAAAAAAAAT-TATA-AG-AT-TTTG----AAT-TAT--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-T--A-AATTTGACAT-G-TTTGG-AA-TGATTG-AACCTTTTATTTTAAT-T--AATATAACACCCC
gi|1 : TAGACGTT-GCTG-----CGCTTATACTGTCG--TTGC--TCAGAG-TATT------CACTTCGGA-TTAACGTGGCCAC-TATAGGCAG-AGATT-AGAATCTCA---------------------CGTT---CCGG-AGT-T-ACACTGC-ACCATTATAGG----CAAGAATGCTAGAAT-----CATCAC--TGTAG---CAGCATCAACGGGGTACCTAGTTT-GAATC---AAT-ATAAAC-ATA-CTACCTCATAGAACTGCGTGGC-GATTTTGCGCGTGCGGAACCGACCTCTGTTGGACAGGTTTCAAGAA--TGAC-CGACTAAGGCCTGCCAGTTTACGCTATT-CACCGTAAGAGAGA--ATTT---TTACTAGGGATTTT--AGGCTT---A-CAAAACATTATTCA---ATACTATTT-CTCT---TTGG--TTAAAG--TACT-AC----ACTATGTACTATGAGAT---GCGAGAAAAA----TTTTAAAATT-AGAGAGAGTAGGCGA-TATCCC-T---TT----AAAAAATATATA-A--AT-TTTGAATTAAT-TAC--T-TGCCTA-TACAAAAT------AGCGAAAAATA-T--CTAATTTGACATGG-TTCGG-AAGTGGTTG-GAACTTTTA-TTTAAT-T--AATATAACACCCC
gi|5 : acgcgctTAAGCGTTAGCTG-----CGCTT-TATTGTCG--TTGC--TCAGAG-TATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCT-AGAATCTC----------------------C-----------A-TGT-AG-CACCAATC--AACGGGGTACCA-G--T-TTAGAAT-----------CATATAA-ACCA--ctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngattctctctcttcgtatggaaaaatcatatgtcttaaatttttcgtatgttataagttttgttttgggttgcatattgaatacacaggaaatggggttttgacaatttgaactaaattatttgaaaaatatagttcgtaacaatagat
gi|10 : aacgctTAAGCGT-AGCTA-----CGCTT-TATTGTCG--TTAA--TCAGAG-TATTGAATT-CGCTTCCGGATTACCA---CAACCTATAGGCAG-AATCT-AATATTTCAATACTACCTCCGTTTAGAGCGT-TT---CCGG-A---T-AA-CGCC-ACC--TATTGG----CT-G-AC-TTGGAAT-----tactacccatattgcgctgcgttttgcatgcagaacgacctcttttggaaggttcaagaaatcagaaatctgcagttacctattacaaagagatatttttactagcagatttagacttaacaaaattattcacaacaccatttttctttggataaagtactacatacatacaatgagatgcacagagaaaagaagtagcgatattccttttaaaaaaga
gi|4 : aagcgcAAGCGCTAGCTG-----CGCTT-TATTGTCG--TTGC--TCAGAG-TATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCTAAGAATCTCA---------------------C-TT---CCGGAA-T-T-AC-CGCC-ACC--TATAGG----CA-GAAT-CTAGAA--------TATCCATGTAGCACCA--ATCAACGGGGTACC-AGTTTAGAATC-----------NNNNNN-NNNNN-NNNNN---NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAG------AAA--T--C-ACA-----ACC-GC-AGTT-AC-CTATTAC-----AAGAGA-A--TTTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTA-TT-TTCT---TTGG--TTAAAG--TACT-ACATATA--ATA-ACAATGAGATG-CAC-AGAGAAAACCTTTTTAAA--T-ATAGA-AGTA-GCGA-TATCCCTT---TTTTTAAAAAAAT-TATAGAGAATGTTTG----AATGTAT--T-
gi|9 : ttttaAAGCGTAAGCTG-----CGTTT-TATTGTCG--T--CAGTCAGAG-TATTTCATTTCACATCCAGATTAACG---CCACCAATAGGCAG-AATCT-AGAATCCCatt
gi|14 : gaagcgcgAAGTGTTAGCTGAGCTGCGCTT-TATTGT-----------------TTTT------CACTTCCGGATTACCG---CCACCTATAGtatgtagcaccaatcaacggggtaccagtttagaatccttatataaaccatactacccataatgttctgcattttgcgtgcggaacgacctctaacgggaggttgcatataaacaagaatggg
gi|21 : agcgcgAAGCGCTAGCTG-----CGCTT-TATTGT
gi|20 : atttttttaAAGCGCTAGCTG-----CGCTT-TATTGT
gi|2 : atgtatttttaCGTTAGCTG-----CGCTT-TATTATCGGTT-GC--TCAGAGTTATT------CATTTCCGGATTACCG---CCA-CTATAGGCAGAAATCT-AGAATC-CA---------------------T-GTACACCAA-A-T-CAAC-GGCG-AC----AT-------CA-GAGA-TCAGGGCGACCGT-TCT-------G-GCCA----C--CG--GTACC-AGTTTAGAATC---T-TCATTAANNNNN-NNNNN-NNNNN---NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAG------AGA--T--CACAA-----ACCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACT-GGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTTGTTCT---TTGG--TT--AA--TACTAAC----AT-ATATACAATGAGATG-CGC-AGAGAAAAC----TTAAA--T-ATAG--AGTA-GCGATTATCCC-T---TTTAAAAAAGAAT-TATG-AG-ATGTTTG----AAT-TATA-T-TG-CTA-TA-AAAAT------AGCGAAAAAAACT--A-AATT--ACAC-G-TTTAG--A-TGGTTG-GAACTTTTATTATGATATTGAATAT-ACACCCC
gi|23 : T-TATTGTCG--TTGC--TCAGAG-TATT------CACTTCCctcatcttcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaataaaacattattctattacattttccgtttataatggttgattttgtttcatctgaataacaggagaatgggggtggctttttccaattgcaggcgactttatttgaagatattatagttcgtaaacaataga
gi|9 : ATTTCA---------------------C-AT---CCAG-A-T-T-AA-CGCC-ACC--AATAGG----CA-GAAT-CTAGAA--------TCCCTATGTAGCACCA--ATCAACGGGGTACC-AGTTTAGAATCCTTA-T-ATAAACCATA-CTACC-CATAA---TGTTCTG
gi|14 : gaagcgcgaagcgtaagctgcgttttattgtcgtcagtcagagtatttcTTTCA---------------------C-TT---CCGG-A-T-T-AC-CGCC-ACC--TATAGcattttgcgtgcggaacgacctctaacgggaggttgcatataaacaagaatggg
gi|5 : agcgcgaagtgttagctgagctgcgctttattgttTCA---------------------C-TT---CCGG-A-T-T-AC-CGCC-ACC--TATAGG----CA-GAAT-CTAGAAT--------CTCCATGTAGCACCA--ATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAT---TGCGCTGCGTTTTGCATGCAGAACGACCTCTTTTGGAAGGTTCAAG------AAA--T--CAGAA-----ATCTGC-AGTT-AC-CTATTACA----AAGAGA-T--ATTT---TTACTAGCAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAACACCATTT-TTCT---TTGG--ATAAAG--TACT-AC----AT-ACATACAATGAGATG-CAC-AGAGAAA-----------------AGA-AGTA-GCGA-TATTCC-----TTTTAAAAAAGA
gi|19 : aacgcttaagcgttagctgcgctttattgtcgttgctcagagtatATGTAGCACCA--ATCAACGGGGTACC-AGTTT
gi|22 : atgtTGTGGCACCA--ATCAACGGGGTACC-AGTTTA
gi|12 : t-ACCA--ATCAACAGGGTACC-AGTTTAGAATT---A-T-ATAAACCATA-CTACC-CATAA---CGCGCTGCGTTTTGCGTGCAGAACGATATCTGTTGGAAGGTTCAAG------AAA--T--
gi|24 : gc-ACCA--ATCAACGGGGTACC-AGTTT
gi|15 : agcATCATATCTACC-CATAA---TGCGCTG
gi|8 : CAAG------AAAGAT--A-CAA-----ACCTGC-AATT-AAACTATTACA----AAGATA-ATCACTTGTTTTACTAGGAGATTTCAAGAACTTA-AACAAAA--TTATCCA-CAATACAATTT-T-CT---TTGG--TTACAAATTACT-AC----AT-ATATAACATGATATGTGGC-AGAAGAAACA---TTAAA--T--TAGA-AGTA-GCGA-TATCCC-T---TTTCAAAAGAAG--TATG-AG-A--TTTG----AAA-CATAAT-TGCCTACTA-AATAT------GGTCAAAAAGA-CA-A-AATTTGACACGG-TTTGG-AAGTGTTGG-AACCTTT--TTTCAAT-cgttttgcggtgcggaacaacctctgttggaaggttca
gi|11 : CAAG------AAAA-T--A-CAA-----ATCTGC-AGTT-AC-ATATTACAAAG-AAGAGA-A--CTTT---TTACTAGGAGATTT------TTTAGA-C-AAA--TTATCCACCAATACAATTT-TTCTTTCTTGGACTTACAG--TA
gi|18 : tttagataccctttggaaacattatgttGTT-AC-CTATAACA----AAGAGA-A--ATTT---TTACAAGGAGATTT--AGacttatat
gi|13 : -TTTTAAT--TTATAGA-AGTA-GCGA-TATCCC-TCCCTTTTAACAAAAAT-TATA-AG-AT-TTTG----AAT-TAT--T-
gi|7 : ATG-AG-AT-TTTG----AAA-TAT--TATTCCAA-TA-AAAATGATTTGAAAAAAAAAAA-CCAA-AATTTGACAC-GGTTTGGGAA-TGGTTGGAACCTTTTATTTAAAT-T--GATAT-ACACCCCattgc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TGTGTTATAAGATTACTTTTGTTATAATGGTTGATTTGTTTCCATTGAATACCGGAGAGATGGGGTGGCATTCTCATTGCAGGGCTATTATTTGAAGATGATATTTGTAAAAATAGATCATGCAGTTAAGTAACTAGATAAGAAAGCTAATTCTAAAAGATATTTGCAACGCTTTAAAACGTATAAATAATAATGTTGTTTCGATGAGAGAGCATTTGTGAATATCGAAACCAATAAACACCGGGAGTGCATGAATGTGTTAACAAGTGAACATTTAAGCTGTCTCTTGACAACCTTTTCCAAAATCTCT
Unaligned ( gi|16 ): AAAACTCACCACGATCAGTTCTTAAGGGTATTAAGACTCGTTTA
Unaligned ( gi|17 ): ATGCGCTGCATTTTGCATGCGGAACGACCTCTGTTGGAAGG
Alignments
lowQualScore : 11111 222222 44444444444444444444444 111 111 1111 1111111 111111 1111111111 1 1111 1 111 111 22222 11111 1 1111111 222222 2222 1 11 2
lowQualScore : 00000 3 4 4 333333 888 5 5 88888888888888888888888 000 5 5 5 5 77 1 5 5 5 000 5555 1 4 7777777 5 5 777 66 4 2 66 4 1 1 4 111111 4 66 6666666666 77 5 5 0 9999 5 66 888 66 1 999 77 5 1 5 000 77 77 5 5 5 5 111 22222 1 99999 5 5 5 33333 0 6 5 5 1 5 8888888 5 8 8 333333 0000 8 0 0 99 8 1 11 8 33 0
lowQualScore : ..... . . . ...... ... . . ....................... ... . . . . .. . . . . ... .... . . ....... . . ... .. . . .. . . . . ...... . .. .......... .. . . . .... . .. ... .. . ... .. . . . ... .. .. . . . . ... ..... . ..... . . . ..... . . . . . . ....... . . . ...... .... . . . .. . . .. . .. .
lowQualScore : 00000 6 4 4 999999 888 7 7 99999999999999999999999 000 7 7 7 7 99 7 7 7 7 000 0000 4 0 6666666 0 0 888 00 4 6 11 4 0 0 0 555555 0 99 3333333333 99 7 0 0 4444 0 99 888 99 4 444 99 7 0 7 000 99 99 7 7 7 7 777 22222 4 44444 7 7 7 77777 3 7 7 7 4 7 9999999 7 0 0 000000 2222 0 8 0 00 0 0 66 0 88 0
consensus : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCT-AGAATCTCA---------------------C-TT---CCGG-A-TT-AC-CGCCACC--TATAGGCA-GA-AT-CTAG---AA-TCNTCCATGTAGCACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGC-GTG--CGGAAC-GACCTCTGTTGGA-AG------GTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGG-AACTTTTATTTTAAT-T--AATATAACACCCC
Reference ( family-9123 ) : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCT-AGAATCTCA---------------------C-TT---CCGG-A-TT-AC-CGCCACC--TATAGGCA-GA-AT-CTAG---AA-TTCTCCATGTAGCACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGC-GCG--CGGAAC-GANCTCTNTTGGA-AG------GTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACNATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGG-ANCTTTTATTTTAAT-T--AATAT-ACACCCC
gi|1 : TAGACGTT-GCTG-----CGCTTATACTGTCG-TTGCTCAGAGT-ATT------CACTTC-GGATTAACGTGGCCAC-TATAGGCAG-AGATT-AGAATCTCA---------------------CGTT---CCGG-AGTT-ACACTGCACCATTATAGGCAAGA-ATGCTAG---AA-TCATCACTGTAGCAGCA-TCAACGGGGTACCTAGTTT-GAATC---AAT-ATAAAC-ATA-CTACCTCATAGAACTGCGTGGCGATTTTGC-GCGTGCGGAACCGACCTCTGTTGGACAG------GTTTCAAGAATGA--CC-G-ACTAAGGCCTGCCAGTTTACGCTATT-CACCGTAAGAGAGA--ATTT---TTACTAGGGATTTT--AGG-CTTA---CAAAACATTATTCA---ATACTATTT-CTCT---TTGG--TTA--AAGTACT-ACACTAT-GT-ACTATGAGATGCG-----AGAAAA-A--TTTTAAAATT-AGAGAGAGTAGGCGA-TATCCC-T---TT----AAAAAATATAT-AA--AT-TTTGAAT-TAATTAC--T-TGCCTA-TACAAAAT------AGCGAAAAATATC--TAA-TTTGACATGGTTCGGAAGTGGTTGG-AACTTTTA-TTTAAT-T--AATATAACACCCC
gi|10 : acgcgctTAAGCGT-AGCTA-----CGCTT-TATTGTCG-TTAATCAGAGT-ATTGAATT-CGCTTCCGGATTACCA---CAACCTATAGGCAG-AATCT-AATATTTCAATACTACCTCCGTTTAGAGCGT-TT---CCGG-A--T-AA-CGCCACC--TATTGGCT-GA-CT--TGG---AA-Tctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngattctctctcttcgtatggaaaaatcatatgtcttaaatttttcgtatgttataagttttgttttgggttgcatattgaatacacaggaaatggggttttgacaatttgaactaaattatttgaaaaatatagttcgtaacaatagat
gi|11 : aagcgcCCTTTGGA-AACATTATGTT-CAAGAA--AA-TA-C-A--AA--TCTGC-AGTT-AC-ATATTACAAAG-AAGAGA-A--CTTT---TTACTAGGAGATTT------TTTAGA-C-AAA--TTATCCACCAATACAATTT-TTCTTTCTTGGACTTA--CAGTA---ACT-TAT-AT-
gi|12 : tttagatacGCACCAATCAACAGGGTACC-AGTTTAGAATT---A-T-ATAAACCATA-CTACC-CATAA---CGCGCTGCG-TTTTGC-GTG--CAGAAC-GATATCTGTTGGA-AG------GTT-CAAGAA--A--T
gi|13 : --TTTTAAT--TTATAGA-AGTAG-CGA-TATCCC-TCCCTTTTAACAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-
gi|14 : AAGTGTTAGCTGAGCTGCGCTT-TATTGT---TT-----------TT------CACTTCCGGATTACCG---CCACCTATAGattgc
gi|15 : agcgcgATCATATCTACC-CATAA---TGCGCTGCG-TTTTGCGGTG--CGGAAC-AACCTCTGTTGGA-AG------GTT-CA
gi|17 : A---TGCGCTGCA-TTTTGC-ATG--CGGAAC-GACCTCTGTTGGA-AG------G
gi|18 : GTT-AC-CTATAACA----AAGAGA-A--ATTT---TTACAAGGAGATTT--AG
gi|19 : ATGTAGCACCAATCAACGGGGTACC-AGTTT
gi|2 : atgtCGTTAGCTG-----CGCTT-TATTATCGGTTGCTCAGAGTTATT------CATTTCCGGATTACCG---CCA-CTATAGGCAGAAATCT-AGAATC-CA---------------------T-GTACACCAA-A-TCAAC-GGCGAC----AT---CA-GAGAT-C-AGGGCGA-CCGTTC---TGGC------CACCGG--TACC-AGTTTAGAATC---T-TCATTAA-NNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNN-NNN--NNNNNN-NNNNNNNNNNNNN-NN------NNN-CAAGAG--A--TCAC-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACT-GGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTTGTTCT---TTGG--TTA--A--TACTAACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C----TTAAA--T-ATAG--AGTAG-CGATTATCCC-T---TTTAAAAAAGAAT-TAT-GAG-ATGTTTGAAT-TA----TA-T-TG-CTA-TA-AAAAT------AGCGAAAAAAA-CT-AAA-TT--ACAC-GTTTAGA--TGGTTGG-AACTTTTATTATGATATTGAATAT-ACACCCC
gi|20 : AAGCGCTAGCTG-----CGCTT-TATTGTctcatcttcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaataaaacattattctattacattttccgtttataatggttgattttgtttcatctgaataacaggagaatgggggtggctttttccaattgcaggcgactttatttgaagatattatagttcgtaaacaataga
gi|21 : atgtatttttaAAGCGCTAGCTG-----CGCTT-TATTGT
gi|22 : atttttttaTGTGGCACCAATCAACGGGGTACC-AGTTTA
gi|23 : tT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCC
gi|24 : AGCACCAATCAACGGGGTACC-AGTTT
gi|3 : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-T-GCTCAGAGT-ATT------CACTTCCGAGTTACCG---CCACCTATAGGCAG-AATCT-AGAATCTCA---------------------C-TT---CCGG-A-TT-AC-CGCCACC--TATAGGCA-GA-AT-TTAG---AATTTCTCCATGTAG-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGT--NNNNNN-NNN--NNNNNN-NNNNNNNNNNNNN-NN------NNN-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGACCTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--CAGTACT-ACA--AT-AT-ACAATGAGATGAG-CGAGAGGAAACC--TTTTAAA--T-ATAGA-AGTAG-CAA-TATCCC-T---TTTTAAAAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-T--AAA-TTTGACAT-GTTTGGAA-TGATTGA-ACCTTTTATTTTAAT-T--AATATAACACCCC
gi|4 : AAGCGCTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCTAAGAATCTCA---------------------C-TT---CCGGAA-TT-AC-CGCCACC--TATAGGCA-GA-AT-CTAG---AA--TATCCATGTAGCACCAATCAACGGGGTACC-AGTTTAGAATC------------NNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNN-NNN--NNNNNN-NNNNNNNNNNNNN-NN------NNN-CAAGAA--A--TC-A-C--AA--CC-GC-AGTT-AC-CTATTAC-----AAGAGA-A--TTTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTA-TT-TTCT---TTGG--TTA--AAGTACT-ACA-TATAATAACAATGAGATGCA-C-AGAGAAAA-CCTTTTTAAA--T-ATAGA-AGTAG-CGA-TATCCCTT---TTTTTAAAAAAAT-TATAGAGAATGTTTGAATGTA----T--T-
gi|5 : ttttaTAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAG-AATCT-AGAATCTCatt
gi|5 : aacgctTCA---------------------C-TT---CCGG-A-TT-AC-CGCCACC--TATAGGCA-GA-AT-CTAG---AA-T-CTCCATGTAGCACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAT---TGCGCTGCG-TTTTGC-ATG--CAGAAC-GACCTCTTTTGGA-AG------GTT-CAAGAA--A--TC-AGA--AA--TCTGC-AGTT-AC-CTATTACA----AAGAGA-T--ATTT---TTACTAGCAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAACACCATTT-TTCT---TTGG--ATA--AAGTACT-ACA-TAC-AT-ACAATGAGATGCA-C-AGAGAAAA------------------GA-AGTAG-CGA-TATTCC-----TTTTAAAAAAGAcatgtagcaccaatcaacggggtaccagtttagaatcatataaaccatactacccatattgcgctgcgttttgcatgcagaacgacctcttttggaaggttcaagaaatcagaaatctgcagttacctattacaaagagatatttttactagcagatttagacttaacaaaattattcacaacaccatttttctttggataaagtactacatacatacaatgagatgcacagagaaaagaagtagcgatattccttttaaaaaaga
gi|7 : aacgcttaagcgttagctgcgctttattgtcgttgctcagagtatAT-GAG-AT-TTTGAAA-TA----T--TATTCCAA-TA-AAAATGATTTGAAAAAAAAAAA-CCAAAA-TTTGACACGGTTTGGGAATGGTTGGAACCTTTTATTTAAAT-T--GATAT-ACACCCC
gi|8 : -CAAGAA--AGATA-C-A--AA--CCTGC-AATT-AAACTATTACA----AAGATA-ATCACTTGTTTTACTAGGAGATTTCAAGAACTTA-AACAAAA--TTATCCA-CAATACAATTT-T-CT---TTGG--TTACAAATTACT-ACA-TAT-AT-AACATGATATGTGGC-AGAAGAAA-C--ATT-AAA--T--TAGA-AGTAG-CGA-TATCCC-T---TTTCAAAAGAAGT--AT-GAG-AT-TT-GAAA-CA----TAAT-TGCCTACTA-AATAT------GGTCAAAAAGA-C--AAAATTTGACACGGTTTGGAAGT-GTTGG-AACCTTT-TTTCAAT-annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataaaacatatctataaatatttcttttgttatactgttgaatttgtttcattgaatatacagaatatgcaacaataaagaattatgaaaaaaaa
gi|9 : AAGCGTAAGCTG-----CGTTT-TATTGTCG-TCAGTCAGAGT-ATTTCATTTCACATCCAGATTAACG---CCACCAATAGGCAG-AATCT-AGAATCCC
gi|9 : gaagcgcgATTTCA---------------------C-AT---CCAG-A-TT-AA-CGCCACC--AATAGGCA-GA-AT-CTAG---AA-TCC-CTATGTAGCACCAATCAACGGGGTACC-AGTTTAGAATCCTTA-T-ATAAACCATA-CTACC-CATAA---TGTTCTGCA-TTTTGC-GTG--CGGAAC-GACCTCTAACGGG-AG------GTT-tatgtagcaccaatcaacggggtaccagtttagaatccttatataaaccatactacccataatgttctgcattttgcgtgcggaacgacctctaacgggaggttgcatataaacaagaatggg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTGTTATAAGATTACTTTTGTTATAATGGTTGATTTGTTTCCATTGAATACCGGAGAGATGGGGTGGCATTCTCATTGCAGGGCTATTATTTGAAGATGATATTTGTAAAAATAGATCATGCAGTTAAGTAACTAGATAAGAAAGCTAATTCTAAAAGATATTTGCAACGCTTTAAAACGTATAAATAATAATGTTGTTTCGATGAGAGAGCATTTGTGAATATCGAAACCAATAAACACCGGGAGTGCATGAATGTGTTAACAAGTGAACATTTAAGCTGTCTCTTGACAACCTTTTCCAAAATCTCT
Unaligned ( gi|16 ): AAAACTCACCACGATCAGTTCTTAAGGGTATTAAGACTCGTTTA
Alignments
lowQualScore : 11111 222222 44444444444444444444444 111 111 1111111 11 1111111111 1 1111 1 111 111 22222 11111 1 1111111 222222 2222 1 11 1
lowQualScore : 00000 3 4 4 333333 888 2 5 5 88888888888888888888888 000 5 5 66 999 1 5 5 5 000 5 88 1 4 4 7777777 5 5 777 66 00 4 4 4 66 6666666666 77 5 5 0 9999 5 66 888 66 1 999 77 5 0 5 000 77 77 5 5 5 5 111 22222 1 99999 5 5 5 33333 0 6 5 5 1 5 8888888 5 8 8 333333 0000 8 0 0 99 8 11 8 33 5
lowQualScore : ..... . . . ...... ... . . . ....................... ... . . .. ... . . . . ... . .. . . . ....... . . ... .. .. . . . .. .......... .. . . . .... . .. ... .. . ... .. . . . ... .. .. . . . . ... ..... . ..... . . . ..... . . . . . . ....... . . . ...... .... . . . .. . .. . .. .
lowQualScore : 00000 6 4 4 999999 888 5 7 7 99999999999999999999999 000 7 7 44 666 7 7 7 7 000 7 55 4 0 0 6666666 0 0 888 00 66 4 4 0 99 3333333333 99 7 0 0 4444 0 99 888 99 4 444 99 7 6 7 000 99 99 7 7 7 7 777 22222 4 44444 7 7 7 77777 3 7 7 7 4 7 9999999 7 0 0 000000 2222 0 8 0 00 0 66 0 88 5
consensus : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
Reference ( family-9123 ) : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
gi|1 : TAGACGTT-GCTG-----CGCTTATACTGTCG-TTGCTCAGAGT-ATT------CACTTC-GGATTAACGTGGCCAC-TATAGGCAGAG-ATT-AGAATCTCA---------------------CGTT---CCGG-AGTTACACTGCACCATTATAGGCAAGA-ATGCTAGA---A-TCATCACTGTAGC-AGCA-TCAACGGGGTACCTAGTTT-GAATC---AAT-ATAAAC-ATA-CTACCTCATAGAACTGCGTGGCGATTTTGCGCGTGCGGAACCGACCTCTGTTGGACAGGTTTCAAGAATGA--CC-G-ACTAAGGCCTGCCAGTTTACGCTATT-CACCGTAAGAGAGA--ATTT---TTACTAGGGATTTT--AGG-CTTA---CAAAACATTATTCA---ATACTATTT-CTCT---TTGG--TTA--AAGTACT-ACACTAT-GT-ACTATGAGATGCG-----AGAAAA-A--TTTTAAAATT-AGAGAGAGTAGGCGA-TATCCC-T---TT----AAAAAATATAT-AA--AT-TTTGAAT-TAATTAC--T-TGCCTA-TACAAAAT------AGCGAAAAATATC--TAA-TTTGACATGGTTCGGAAGTGGTTGGAA-CTTTTA-TTTAAT-T--AATATAACACCCC
gi|10 : acgcgctTAAGCGT-AGCTA-----CGCTT-TATTGTCG-TTAATCAGAGT-ATTGAATT-CGCTTCCGGATTACCA---CAACCTATAGGCAGAA-TCT-AATATTTCAATACTACCTCCGTTTAGAGCGT-TT---CCGG-A--TAA-CGCCACC--TATTGGCT-GA-CT--TGGA---A-Tctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngattctctctcttcgtatggaaaaatcatatgtcttaaatttttcgtatgttataagttttgttttgggttgcatattgaatacacaggaaatggggttttgacaatttgaactaaattatttgaaaaatatagttcgtaacaatagat
gi|11 : aagcgcGTT-CAAGAA--AA-TA-C-A--AA--TCTGC-AGTT-AC-ATATTACAAAG-AAGAGA-A--CTTT---TTACTAGGAGATTT------TTTAGA-C-AAA--TTATCCACCAATACAATTT-TTCTTTCTTGGACTTA--CAGTA---ACT-TAT-AT-
gi|12 : tttagataccctttggaaacattatGC-ACCAATCAACAGGGTACC-AGTTTAGAATT---A-T-ATAAACCATA-CTACC-CATAA---CGCGCTGCG-TTTTGCG--TGCAGAAC-GATATCTGTTGGA-AGGTT-CAAGAA--A--T
gi|13 : --TTTTAAT--TTATAGA-AGTAG-CGA-TATCCC-TCCCTTTTAACAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-
gi|14 : AAGTGTTAGCTGAGCTGCGCTT-TATTGT---TT-----------TT------CACTTCCGGATTACCG---CCACCTATAGattgc
gi|15 : agcgcgATCATATCTACC-CATAA---TGCGCTGCG-TTTTGCGG-TGCGGAAC-AACCTCTGTTGGA-AGGTT-CA
gi|17 : A---TGCGCTGCA-TTTTGCA--TGCGGAAC-GACCTCTGTTGGA-AGG
gi|18 : GTT-AC-CTATAACA----AAGAGA-A--ATTT---TTACAAGGAGATTT--AG
gi|19 : ATGTAGC-ACCAATCAACGGGGTACC-AGTTT
gi|2 : atgtCGTTAGCTG-----CGCTT-TATTATCGGTTGCTCAGAGTTATT------CATTTCCGGATTACCG---CCAC-TATAGGCAGAAATCT-AGAATC-CA---------------------T-GTACACCAA-A-TCAA-CGGCGAC---AT---CA-GAGAT-C-AGGGCGA-CCGTTC---TGGCCACC---------GGTACC-AGTTTAGAATC---T-TCATTAANNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNN--CAAGAG--A--TCAC-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACT-GGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTTGTTCT---TTGG--TTA--A--TACTAACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C----TTAAA--T-ATAG--AGTAG-CGATTATCCC-T---TTTAAAAAAGAAT-TAT-GAG-ATGTTTGAAT-TA----TA-T-TG-CTA-TA-AAAAT------AGCGAAAAAAA-CT-AAA-TT--ACAC-GTTTAGA--TGGTTGGAA-CTTTTATTATGATATTGAATAT-ACACCCC
gi|20 : AAGCGCTAGCTG-----CGCTT-TATTGTctcatcttcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaataaaacattattctattacattttccgtttataatggttgattttgtttcatctgaataacaggagaatgggggtggctttttccaattgcaggcgactttatttgaagatattatagttcgtaaacaataga
gi|21 : atgtatttttaAAGCGCTAGCTG-----CGCTT-TATTGT
gi|22 : atttttttaTGTGGC-ACCAATCAACGGGGTACC-AGTTTA
gi|23 : tT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCC
gi|24 : AGC-ACCAATCAACGGGGTACC-AGTTT
gi|3 : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-T-GCTCAGAGT-ATT------CACTTCCGAGTTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-TTAGA---ATTTCTCCATGTAG--ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGT--NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNNN-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGACCTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--CAGTACT-ACA--AT-AT-ACAATGAGATGAG-CGAGAGGAAACC--TTTTAAA--T-ATAGA-AGTAG-CAA-TATCCC-T---TTTTAAAAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-T--AAA-TTTGACAT-GTTTGGAA-TGATTGAAC-CTTTTATTTTAAT-T--AATATAACACCCC
gi|4 : AAGCGCTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCTAAGAATCTCA---------------------C-TT---CCGGAA-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-T-ATCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC------------NNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNNN-CAAGAA--A--TC-A-C--AA--CC-GC-AGTT-AC-CTATTAC-----AAGAGA-A--TTTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTA-TT-TTCT---TTGG--TTA--AAGTACT-ACA-TATAATAACAATGAGATGCA-C-AGAGAAAA-CCTTTTTAAA--T-ATAGA-AGTAG-CGA-TATCCCTT---TTTTTAAAAAAAT-TATAGAGAATGTTTGAATGTA----T--T-
gi|5 : ttttaTAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCatt
gi|5 : aacgctTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TC-TCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAT---TGCGCTGCG-TTTTGCA--TGCAGAAC-GACCTCTTTTGGA-AGGTT-CAAGAA--A--TC-AGA--AA--TCTGC-AGTT-AC-CTATTACA----AAGAGA-T--ATTT---TTACTAGCAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAACACCATTT-TTCT---TTGG--ATA--AAGTACT-ACA-TAC-AT-ACAATGAGATGCA-C-AGAGAAAA------------------GA-AGTAG-CGA-TATTCC-----TTTTAAAAAAGAcatgtagcaccaatcaacggggtaccagtttagaatcatataaaccatactacccatattgcgctgcgttttgcatgcagaacgacctcttttggaaggttcaagaaatcagaaatctgcagttacctattacaaagagatatttttactagcagatttagacttaacaaaattattcacaacaccatttttctttggataaagtactacatacatacaatgagatgcacagagaaaagaagtagcgatattccttttaaaaaaga
gi|7 : aacgcttaagcgttagctgcgctttattgtcgttgctcagagtatAT-GAG-AT-TTTGAAA-TA----T--TATTCCAA-TA-AAAATGATTTGAAAAAAAAAAA-CCAAAA-TTTGACACGGTTTGGGAATGGTTGGAACCTTTTATTTAAAT-T--GATAT-ACACCCC
gi|8 : -CAAGAA--AGATA-C-A--AA--CCTGC-AATT-AAACTATTACA----AAGATA-ATCACTTGTTTTACTAGGAGATTTCAAGAACTTA-AACAAAA--TTATCCA-CAATACAATTT-T-CT---TTGG--TTACAAATTACT-ACA-TAT-AT-AACATGATATGTGGC-AGAAGAAA-C--ATT-AAA--T--TAGA-AGTAG-CGA-TATCCC-T---TTTCAAAAGAAGT--AT-GAG-AT-TT-GAAA-CA----TAAT-TGCCTACTA-AATAT------GGTCAAAAAGA-C--AAAATTTGACACGGTTTGGAAGT-GTTGGAA-CCTTT-TTTCAAT-annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataaaacatatctataaatatttcttttgttatactgttgaatttgtttcattgaatatacagaatatgcaacaataaagaattatgaaaaaaaa
gi|9 : AAGCGTAAGCTG-----CGTTT-TATTGTCG-TCAGTCAGAGT-ATTTCATTTCACATCCAGATTAACG---CCACCAATAGGCAGAA-TCT-AGAATCCC
gi|9 : gaagcgcgATTTCA---------------------C-AT---CCAG-A-TTAA-CGCCACC--AATAGGCA-GA-AT-CTAGA---A-TCC-CTATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATCCTTA-T-ATAAACCATA-CTACC-CATAA---TGTTCTGCA-TTTTGCG--TGCGGAAC-GACCTCTAACGGG-AGGTT-tatgtagcaccaatcaacggggtaccagtttagaatccttatataaaccatactacccataatgttctgcattttgcgtgcggaacgacctctaacgggaggttgcatataaacaagaatggg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTGTTATAAGATTACTTTTGTTATAATGGTTGATTTGTTTCCATTGAATACCGGAGAGATGGGGTGGCATTCTCATTGCAGGGCTATTATTTGAAGATGATATTTGTAAAAATAGATCATGCAGTTAAGTAACTAGATAAGAAAGCTAATTCTAAAAGATATTTGCAACGCTTTAAAACGTATAAATAATAATGTTGTTTCGATGAGAGAGCATTTGTGAATATCGAAACCAATAAACACCGGGAGTGCATGAATGTGTTAACAAGTGAACATTTAAGCTGTCTCTTGACAACCTTTTCCAAAATCTCT
Unaligned ( gi|16 ): AAAACTCACCACGATCAGTTCTTAAGGGTATTAAGACTCGTTTA
Alignments
lowQualScore : 11111 222222 44444444444444444444444 111 111 1111111 11 1111111111 1 1111 1 111 111 22222 11111 1 1111111 222222 2222 1 11 1
lowQualScore : 00000 3 4 4 333333 888 2 5 5 88888888888888888888888 000 5 5 66 999 1 5 5 5 000 5 88 1 4 4 7777777 5 5 777 66 00 4 4 4 66 6666666666 77 5 5 0 9999 5 66 888 66 1 999 77 5 0 5 000 77 77 5 5 5 5 111 22222 1 99999 5 5 5 33333 0 6 5 5 1 5 8888888 5 8 8 333333 0000 8 0 0 99 8 11 8 33 5
lowQualScore : ..... . . . ...... ... . . . ....................... ... . . .. ... . . . . ... . .. . . . ....... . . ... .. .. . . . .. .......... .. . . . .... . .. ... .. . ... .. . . . ... .. .. . . . . ... ..... . ..... . . . ..... . . . . . . ....... . . . ...... .... . . . .. . .. . .. .
lowQualScore : 00000 6 4 4 999999 888 5 7 7 99999999999999999999999 000 7 7 44 666 7 7 7 7 000 7 55 4 0 0 6666666 0 0 888 00 66 4 4 0 99 3333333333 99 7 0 0 4444 0 99 888 99 4 444 99 7 6 7 000 99 99 7 7 7 7 777 22222 4 44444 7 7 7 77777 3 7 7 7 4 7 9999999 7 0 0 000000 2222 0 8 0 00 0 66 0 88 5
consensus : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
Reference ( family-9123 ) : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
gi|1 : TAGACGTT-GCTG-----CGCTTATACTGTCG-TTGCTCAGAGT-ATT------CACTTC-GGATTAACGTGGCCAC-TATAGGCAGAG-ATT-AGAATCTCA---------------------CGTT---CCGG-AGTTACACTGCACCATTATAGGCAAGA-ATGCTAGA---A-TCATCACTGTAGC-AGCA-TCAACGGGGTACCTAGTTT-GAATC---AAT-ATAAAC-ATA-CTACCTCATAGAACTGCGTGGCGATTTTGCGCGTGCGGAACCGACCTCTGTTGGACAGGTTTCAAGAATGA--CC-G-ACTAAGGCCTGCCAGTTTACGCTATT-CACCGTAAGAGAGA--ATTT---TTACTAGGGATTTT--AGG-CTTA---CAAAACATTATTCA---ATACTATTT-CTCT---TTGG--TTA--AAGTACT-ACACTAT-GT-ACTATGAGATGCG-----AGAAAA-A--TTTTAAAATT-AGAGAGAGTAGGCGA-TATCCC-T---TT----AAAAAATATAT-AA--AT-TTTGAAT-TAATTAC--T-TGCCTA-TACAAAAT------AGCGAAAAATATC--TAA-TTTGACATGGTTCGGAAGTGGTTGGAA-CTTTTA-TTTAAT-T--AATATAACACCCC
gi|10 : acgcgctTAAGCGT-AGCTA-----CGCTT-TATTGTCG-TTAATCAGAGT-ATTGAATT-CGCTTCCGGATTACCA---CAACCTATAGGCAGAA-TCT-AATATTTCAATACTACCTCCGTTTAGAGCGT-TT---CCGG-A--TAA-CGCCACC--TATTGGCT-GA-CT--TGGA---A-Tctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngattctctctcttcgtatggaaaaatcatatgtcttaaatttttcgtatgttataagttttgttttgggttgcatattgaatacacaggaaatggggttttgacaatttgaactaaattatttgaaaaatatagttcgtaacaatagat
gi|11 : aagcgcGTT-CAAGAA--AA-TA-C-A--AA--TCTGC-AGTT-AC-ATATTACAAAG-AAGAGA-A--CTTT---TTACTAGGAGATTT------TTTAGA-C-AAA--TTATCCACCAATACAATTT-TTCTTTCTTGGACTTA--CAGTA---ACT-TAT-AT-
gi|12 : tttagataccctttggaaacattatGC-ACCAATCAACAGGGTACC-AGTTTAGAATT---A-T-ATAAACCATA-CTACC-CATAA---CGCGCTGCG-TTTTGCG--TGCAGAAC-GATATCTGTTGGA-AGGTT-CAAGAA--A--T
gi|13 : --TTTTAAT--TTATAGA-AGTAG-CGA-TATCCC-TCCCTTTTAACAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-
gi|14 : AAGTGTTAGCTGAGCTGCGCTT-TATTGT---TT-----------TT------CACTTCCGGATTACCG---CCACCTATAGattgc
gi|15 : agcgcgATCATATCTACC-CATAA---TGCGCTGCG-TTTTGCGG-TGCGGAAC-AACCTCTGTTGGA-AGGTT-CA
gi|17 : A---TGCGCTGCA-TTTTGCA--TGCGGAAC-GACCTCTGTTGGA-AGG
gi|18 : GTT-AC-CTATAACA----AAGAGA-A--ATTT---TTACAAGGAGATTT--AG
gi|19 : ATGTAGC-ACCAATCAACGGGGTACC-AGTTT
gi|2 : atgtCGTTAGCTG-----CGCTT-TATTATCGGTTGCTCAGAGTTATT------CATTTCCGGATTACCG---CCAC-TATAGGCAGAAATCT-AGAATC-CA---------------------T-GTACACCAA-A-TCAA-CGGCGAC---AT---CA-GAGAT-C-AGGGCGA-CCGTTC---TGGCCACC---------GGTACC-AGTTTAGAATC---T-TCATTAANNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNN--CAAGAG--A--TCAC-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACT-GGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTTGTTCT---TTGG--TTA--A--TACTAACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C----TTAAA--T-ATAG--AGTAG-CGATTATCCC-T---TTTAAAAAAGAAT-TAT-GAG-ATGTTTGAAT-TA----TA-T-TG-CTA-TA-AAAAT------AGCGAAAAAAA-CT-AAA-TT--ACAC-GTTTAGA--TGGTTGGAA-CTTTTATTATGATATTGAATAT-ACACCCC
gi|20 : AAGCGCTAGCTG-----CGCTT-TATTGTctcatcttcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaataaaacattattctattacattttccgtttataatggttgattttgtttcatctgaataacaggagaatgggggtggctttttccaattgcaggcgactttatttgaagatattatagttcgtaaacaataga
gi|21 : atgtatttttaAAGCGCTAGCTG-----CGCTT-TATTGT
gi|22 : atttttttaTGTGGC-ACCAATCAACGGGGTACC-AGTTTA
gi|23 : tT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCC
gi|24 : AGC-ACCAATCAACGGGGTACC-AGTTT
gi|3 : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-T-GCTCAGAGT-ATT------CACTTCCGAGTTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-TTAGA---ATTTCTCCATGTAG--ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGT--NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNNN-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGACCTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--CAGTACT-ACA--AT-AT-ACAATGAGATGAG-CGAGAGGAAACC--TTTTAAA--T-ATAGA-AGTAG-CAA-TATCCC-T---TTTTAAAAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-T--AAA-TTTGACAT-GTTTGGAA-TGATTGAAC-CTTTTATTTTAAT-T--AATATAACACCCC
gi|4 : AAGCGCTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCTAAGAATCTCA---------------------C-TT---CCGGAA-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-T-ATCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC------------NNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNNN-CAAGAA--A--TC-A-C--AA--CC-GC-AGTT-AC-CTATTAC-----AAGAGA-A--TTTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTA-TT-TTCT---TTGG--TTA--AAGTACT-ACA-TATAATAACAATGAGATGCA-C-AGAGAAAA-CCTTTTTAAA--T-ATAGA-AGTAG-CGA-TATCCCTT---TTTTTAAAAAAAT-TATAGAGAATGTTTGAATGTA----T--T-
gi|5 : ttttaTAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCatt
gi|5 : aacgctTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TC-TCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAT---TGCGCTGCG-TTTTGCA--TGCAGAAC-GACCTCTTTTGGA-AGGTT-CAAGAA--A--TC-AGA--AA--TCTGC-AGTT-AC-CTATTACA----AAGAGA-T--ATTT---TTACTAGCAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAACACCATTT-TTCT---TTGG--ATA--AAGTACT-ACA-TAC-AT-ACAATGAGATGCA-C-AGAGAAAA------------------GA-AGTAG-CGA-TATTCC-----TTTTAAAAAAGAcatgtagcaccaatcaacggggtaccagtttagaatcatataaaccatactacccatattgcgctgcgttttgcatgcagaacgacctcttttggaaggttcaagaaatcagaaatctgcagttacctattacaaagagatatttttactagcagatttagacttaacaaaattattcacaacaccatttttctttggataaagtactacatacatacaatgagatgcacagagaaaagaagtagcgatattccttttaaaaaaga
gi|7 : aacgcttaagcgttagctgcgctttattgtcgttgctcagagtatAT-GAG-AT-TTTGAAA-TA----T--TATTCCAA-TA-AAAATGATTTGAAAAAAAAAAA-CCAAAA-TTTGACACGGTTTGGGAATGGTTGGAACCTTTTATTTAAAT-T--GATAT-ACACCCC
gi|8 : -CAAGAA--AGATA-C-A--AA--CCTGC-AATT-AAACTATTACA----AAGATA-ATCACTTGTTTTACTAGGAGATTTCAAGAACTTA-AACAAAA--TTATCCA-CAATACAATTT-T-CT---TTGG--TTACAAATTACT-ACA-TAT-AT-AACATGATATGTGGC-AGAAGAAA-C--ATT-AAA--T--TAGA-AGTAG-CGA-TATCCC-T---TTTCAAAAGAAGT--AT-GAG-AT-TT-GAAA-CA----TAAT-TGCCTACTA-AATAT------GGTCAAAAAGA-C--AAAATTTGACACGGTTTGGAAGT-GTTGGAA-CCTTT-TTTCAAT-annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataaaacatatctataaatatttcttttgttatactgttgaatttgtttcattgaatatacagaatatgcaacaataaagaattatgaaaaaaaa
gi|9 : AAGCGTAAGCTG-----CGTTT-TATTGTCG-TCAGTCAGAGT-ATTTCATTTCACATCCAGATTAACG---CCACCAATAGGCAGAA-TCT-AGAATCCC
gi|9 : gaagcgcgATTTCA---------------------C-AT---CCAG-A-TTAA-CGCCACC--AATAGGCA-GA-AT-CTAGA---A-TCC-CTATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATCCTTA-T-ATAAACCATA-CTACC-CATAA---TGTTCTGCA-TTTTGCG--TGCGGAAC-GACCTCTAACGGG-AGGTT-tatgtagcaccaatcaacggggtaccagtttagaatccttatataaaccatactacccataatgttctgcattttgcgtgcggaacgacctctaacgggaggttgcatataaacaagaatggg
blockSeqs : AGCTG . G T TCATTT . C A A ATACTACCTCCGTTTAGAGCGT ACA A . A T T . G . GCG T CG A C . CTTAT T . . G G . . . . GATACA . . . A AAG . TC GTT CA C GA . C G TTC AC CA A . A A CG CCTT T TTA . . T TCCC . A A G G TAA A C . GATTTG CCA A G AA C AT A TG A
blockSeqs : . . . . GAATT . C . . T . . . A T A . . . . . TC A . . TTC . . . G . . . . . ATACA . . . . . . . . . A AA . . . . . . . . . . GC CCT T TA . . . TT . . . G . TA . . . . CT . G AG . AT . . .
blockSeqs : . . . . . . C . . C . . . C T A . . . . . CC A . . AT . . . A . . . . . TCACA . . . . . . . . . . A . . . . . . . . . . C CA T TA . . . T . . . . . T . . . . T . . A . AT . . .
blockSeqs : . . . . . . C . . C . . . C T A . . . . . A A . . AT . . . N . . . . . TCAGA . . . . . . . . . . A . . . . . . . . . . C C T TA . . . T . . . . . T . . . . C . . . . T .
blockSeqs : . . . . . . C . . C . . . C A A . . . . . C A . . AT . . . N . . . . . TCCA . . . . . . . . . . A . . . . . . . . . . C . . T . . . T . . . . . T .
blockSeqs : . . . . . . C . . C . . . A . . . . . . . . . . . . . . G . . . . . TCAC . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : *** C********************** N* T** AT***** *** G* ** ** TCACA***** ** **** A** ** C** C**** TA*** T****** CC** AT
originalCons : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTAC-CGCCACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--A--TC-C-A--AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCG-C-AGAGAAAA-C--TTTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-C--AAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
finalCons : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCAC----------------------TT---CCGG-A-TTAN-CGCCACCT--ATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATCAT-----ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--ATCACA-----AA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTAA--CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGCGC--AGAGAAAAC----TTTAAATA---TAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TAT------T-TGCCTA-TA-AAAAT------AGCGAAAAAAACC--AAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTGTTATAAGATTACTTTTGTTATAATGGTTGATTTGTTTCCATTGAATACCGGAGAGATGGGGTGGCATTCTCATTGCAGGGCTATTATTTGAAGATGATATTTGTAAAAATAGATCATGCAGTTAAGTAACTAGATAAGAAAGCTAATTCTAAAAGATATTTGCAACGCTTTAAAACGTATAAATAATAATGTTGTTTCGATGAGAGAGCATTTGTGAATATCGAAACCAATAAACACCGGGAGTGCATGAATGTGTTAACAAGTGAACATTTAAGCTGTCTCTTGACAACCTTTTCCAAAATCTCT
Unaligned ( gi|16 ): AAAACTCACCACGATCAGTTCTTAAGGGTATTAAGACTCGTTTA
Alignments
lowQualScore : 11111 222222 44444444444444444444444 111 111 1111111 11 1 1111 1 111 2222 11111 1 1111111 222222 1 11 1
lowQualScore : 00000 3 4 4 333333 888 2 5 5 88888888888888888888888 000 5 5 6 77 999 1 5 5 5 000 5 88 1 4 4 7777777 5 5 777 66 00 4 4 4 66 5 5 77 5 5 0 9999 5 66 888 66 1 999 77 5 0 5 000 77 77 5 5 5 5 7777 1 3333 99999 5 5 5 33333 0 6 5 5 1 5 8888888 5 8 8 333333 44 8 0 0 99 8 11 8 33 5
lowQualScore : ..... . . . ...... ... . . . ....................... ... . . . .. ... . . . . ... . .. . . . ....... . . ... .. .. . . . .. . . .. . . . .... . .. ... .. . ... .. . . . ... .. .. . . . . .... . .... ..... . . . ..... . . . . . . ....... . . . ...... .. . . . .. . .. . .. .
lowQualScore : 00000 6 4 4 999999 888 5 7 7 99999999999999999999999 000 7 7 6 99 666 7 7 7 7 000 7 55 4 0 0 6666666 0 0 888 00 66 4 4 0 99 0 7 99 7 0 0 4444 0 99 888 99 4 444 99 7 6 7 000 99 99 7 7 7 7 0000 0 0000 44444 7 7 7 77777 3 7 7 7 4 7 9999999 7 0 0 000000 66 0 8 0 00 0 66 0 88 5
consensus : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTANCGC--CACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--AT-C-ACAAA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGC-GC-AGAGAAAAC---TTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAACCAAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
Reference ( family-9123 ) : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTANCGC--CACC--TATAGGCA-GA-AT-CTAGA---A-TCNTCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGCG-TTTTGCG--TGCGGAAC-GACCTCTGTTGGA-AGGTT-CAAGAA--AT-C-ACAAA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--AAGTACT-ACA-TAT-AT-ACAATGAGATGC-GC-AGAGAAAAC---TTTAAA--T-ATAGA-AGTAG-CGA-TATCCC-T---TTTTAAAAAAAAT-TAT-GAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAACCAAA-TTTGACACGGTTTGGAAGTGGTTGGAA-CTTTTATTTTAAT-T--AATATAACACCCC
gi|1 : TAGACGTT-GCTG-----CGCTTATACTGTCG-TTGCTCAGAGT-ATT------CACTTC-GGATTAACGTGGCCAC-TATAGGCAGAG-ATT-AGAATCTCA---------------------CGTT---CCGG-AGTTA-CACTGCACCATTATAGGCAAGA-ATGCTAGA---A-TCATCACTGTAGC-AGCA-TCAACGGGGTACCTAGTTT-GAATC---AAT-ATAAAC-ATA-CTACCTCATAGAACTGCGTGGCGATTTTGCGCGTGCGGAACCGACCTCTGTTGGACAGGTTTCAAGAATGAC-CGACTAAGGCCTGCCAGTTTACGCTATT-CACCGTAAGAGAGA--ATTT---TTACTAGGGATTTT--AGG-CTTA---CAAAACATTATTCA---ATACTATTT-CTCT---TTGG--TTA--AAGTACT-ACACTAT-GT-ACTATGAGATGC-G--AGA-AAAAT---TTTAAAATT-AGAGAGAGTAGGCGA-TATCCC-T---TT----AAAAAATATAT-AA--AT-TTTGAAT-TAATTAC--T-TGCCTA-TACAAAAT------AGCGAAAAATATCTAA-TTTGACATGGTTCGGAAGTGGTTGGAA-CTTTTA-TTTAAT-T--AATATAACACCCC
gi|10 : acgcgctTAAGCGT-AGCTA-----CGCTT-TATTGTCG-TTAATCAGAGT-ATTGAATT-CGCTTCCGGATTACCA---CAACCTATAGGCAGAA-TCT-AATATTTCAATACTACCTCCGTTTAGAGCGT-TT---CCGG-A--TAACGC--CACC--TATTGGCT-GA-CT--TGGA---A-Tctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngattctctctcttcgtatggaaaaatcatatgtcttaaatttttcgtatgttataagttttgttttgggttgcatattgaatacacaggaaatggggttttgacaatttgaactaaattatttgaaaaatatagttcgtaacaatagat
gi|11 : aagcgcGTT-CAAGAA--AA-T-ACAAA--TCTGC-AGTT-AC-ATATTACAAAG-AAGAGA-A--CTTT---TTACTAGGAGATTT------TTTAGA-C-AAA--TTATCCACCAATACAATTT-TTCTTTCTTGGACTTA--CAGTA---ACT-TAT-AT-
gi|12 : tttagataccctttggaaacattatGC-ACCAATCAACAGGGTACC-AGTTTAGAATT---A-T-ATAAACCATA-CTACC-CATAA---CGCGCTGCG-TTTTGCG--TGCAGAAC-GATATCTGTTGGA-AGGTT-CAAGAA--AT-
gi|13 : ---TTTAAT--TTATAGA-AGTAG-CGA-TATCCC-TCCCTTTTAACAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-
gi|14 : tAAGTGTTAGCTGAGCTGCGCTT-TATTGT---TT-----------TT------CACTTCCGGATTACCG---CCACCTATAGattgc
gi|15 : agcgcgATCATATCTACC-CATAA---TGCGCTGCG-TTTTGCGG-TGCGGAAC-AACCTCTGTTGGA-AGGTT-CA
gi|17 : A---TGCGCTGCA-TTTTGCA--TGCGGAAC-GACCTCTGTTGGA-AGG
gi|18 : GTT-AC-CTATAACA----AAGAGA-A--ATTT---TTACAAGGAGATTT--AG
gi|19 : ATGTAGC-ACCAATCAACGGGGTACC-AGTTT
gi|2 : atgtCGTTAGCTG-----CGCTT-TATTATCGGTTGCTCAGAGTTATT------CATTTCCGGATTACCG---CCAC-TATAGGCAGAAATCT-AGAATC-CA---------------------T-GTACACCAA-A-TCAACGG--CGAC---AT---CA-GAGAT-C-AGGGCGA-CCGTTC---TGGCCACC---------GGTACC-AGTTTAGAATC---T-TCATTAANNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNN--CAAGAG--AT-C-ACAAA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACT-GGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTATTTGTTCT---TTGG--TTA--A--TACTAACA-TAT-AT-ACAATGAGATGC-GC-AGAGAAAAC----TTAAA--T-ATAG--AGTAG-CGATTATCCC-T---TTTAAAAAAGAAT-TAT-GAG-ATGTTTGAAT-TA----TA-T-TG-CTA-TA-AAAAT------AGCGAAAAAAACTAAA-TT--ACAC-GTTTAGA--TGGTTGGAA-CTTTTATTATGATATTGAATAT-ACACCCC
gi|20 : AAGCGCTAGCTG-----CGCTT-TATTGTctcatcttcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaataaaacattattctattacattttccgtttataatggttgattttgtttcatctgaataacaggagaatgggggtggctttttccaattgcaggcgactttatttgaagatattatagttcgtaaacaataga
gi|21 : atgtatttttaAAGCGCTAGCTG-----CGCTT-TATTGT
gi|22 : atttttttaTGTGGC-ACCAATCAACGGGGTACC-AGTTTA
gi|23 : tT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCC
gi|24 : AGC-ACCAATCAACGGGGTACC-AGTTT
gi|3 : TAAGCGTTAGCTG-----CGCTT-TATTGTCG-T-GCTCAGAGT-ATT------CACTTCCGAGTTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCA---------------------C-TT---CCGG-A-TTACCGC--CACC--TATAGGCA-GA-AT-TTAGA---ATTTCTCCATGTAG--ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAA---TGCGCTGT--NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNNN-CAAGAA--AT-C--CAAA--CCTGC-AGTT-AC-CTATTACA----AAGAGA-A--ATTT---TTACTAGGAGATTT--AGACCTTA-A-CAAAA--TTATTCA-CAATACTATTT-TTCT---TTGG--TTA--CAGTACT-ACA--AT-AT-ACAATGAGATGA-GCGAGAGGAAACCT-TTTAAA--T-ATAGA-AGTAG-CAA-TATCCC-T---TTTTAAAAAAAAT-TAT-AAG-AT-TTTGAAT-TA----T--T-TGCCTA-TA-AAAAT------AGCGAAAAAAA-TAAA-TTTGACAT-GTTTGGAA-TGATTGAAC-CTTTTATTTTAAT-T--AATATAACACCCC
gi|4 : AAGCGCTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCTAAGAATCTCA---------------------C-TT---CCGGAA-TTACCGC--CACC--TATAGGCA-GA-AT-CTAGA---A-T-ATCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC------------NNNNN-NNNNN-NNNNN---NNNNNNNNN-NNNNNNN--NNNNNNNN-NNNNNNNNNNNNN-NNNNN-CAAGAA--AT-C-ACAA----CCGC-AGTT-AC-CTATTAC-----AAGAGA-A--TTTT---TTACTAGGAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAATACTA-TT-TTCT---TTGG--TTA--AAGTACT-ACA-TATAATAACAATGAGATGC-AC-AGAGAAAACCTTTTTAAA--T-ATAGA-AGTAG-CGA-TATCCCTT---TTTTTAAAAAAAT-TATAGAGAATGTTTGAATGTA----T--T-
gi|5 : ttttaTAAGCGTTAGCTG-----CGCTT-TATTGTCG-TTGCTCAGAGT-ATT------CACTTCCGGATTACCG---CCACCTATAGGCAGAA-TCT-AGAATCTCatt
gi|5 : aacgctTCA---------------------C-TT---CCGG-A-TTACCGC--CACC--TATAGGCA-GA-AT-CTAGA---A-TC-TCCATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATC---A-T-ATAAACCATA-CTACC-CATAT---TGCGCTGCG-TTTTGCA--TGCAGAAC-GACCTCTTTTGGA-AGGTT-CAAGAA--AT-C-AGAAA--TCTGC-AGTT-AC-CTATTACA----AAGAGA-T--ATTT---TTACTAGCAGATTT--AGA-CTTA-A-CAAAA--TTATTCA-CAACACCATTT-TTCT---TTGG--ATA--AAGTACT-ACA-TAC-AT-ACAATGAGATGC-AC-AGAGAAA-----------------AGA-AGTAG-CGA-TATTCC-----TTTTAAAAAAGAcatgtagcaccaatcaacggggtaccagtttagaatcatataaaccatactacccatattgcgctgcgttttgcatgcagaacgacctcttttggaaggttcaagaaatcagaaatctgcagttacctattacaaagagatatttttactagcagatttagacttaacaaaattattcacaacaccatttttctttggataaagtactacatacatacaatgagatgcacagagaaaagaagtagcgatattccttttaaaaaaga
gi|7 : aacgcttaagcgttagctgcgctttattgtcgttgctcagagtatAT-GAG-AT-TTTGAAA-TA----T--TATTCCAA-TA-AAAATGATTTGAAAAAAAAAAACCAAAATTTGACACGGTTTGGGAATGGTTGGAACCTTTTATTTAAAT-T--GATAT-ACACCCC
gi|8 : -CAAGAA--AGAT-ACAAA--CCTGC-AATT-AAACTATTACA----AAGATA-ATCACTTGTTTTACTAGGAGATTTCAAGAACTTA-AACAAAA--TTATCCA-CAATACAATTT-T-CT---TTGG--TTACAAATTACT-ACA-TAT-AT-AACATGATATGTGGC-AGAAGAAAC---ATTAAA--T--TAGA-AGTAG-CGA-TATCCC-T---TTTCAAAAGAAG--TAT-GAG-A--TTTGAAA-CA----TAAT-TGCCTACTA-AATAT------GGTCAAAAAGACAAAA-TTTGACACGGTTTGGAAGT-GTTGGAA-CCTTT-TTTCAAT-annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataaaacatatctataaatatttcttttgttatactgttgaatttgtttcattgaatatacagaatatgcaacaataaagaattatgaaaaaaaa
gi|9 : AAGCGTAAGCTG-----CGTTT-TATTGTCG-TCAGTCAGAGT-ATTTCATTTCACATCCAGATTAACG---CCACCAATAGGCAGAA-TCT-AGAATCCC
gi|9 : gaagcgcgATTTCA---------------------C-AT---CCAG-A-TTAACGC--CACC--AATAGGCA-GA-AT-CTAGA---A-TCC-CTATGTAGC-ACCAATCAACGGGGTACC-AGTTTAGAATCCTTA-T-ATAAACCATA-CTACC-CATAA---TGTTCTGCA-TTTTGCG--TGCGGAAC-GACCTCTAACGGG-AGGTT-tatgtagcaccaatcaacggggtaccagtttagaatccttatataaaccatactacccataatgttctgcattttgcgtgcggaacgacctctaacgggaggttgcatataaacaagaatggg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTGTTATAAGATTACTTTTGTTATAATGGTTGATTTGTTTCCATTGAATACCGGAGAGATGGGGTGGCATTCTCATTGCAGGGCTATTATTTGAAGATGATATTTGTAAAAATAGATCATGCAGTTAAGTAACTAGATAAGAAAGCTAATTCTAAAAGATATTTGCAACGCTTTAAAACGTATAAATAATAATGTTGTTTCGATGAGAGAGCATTTGTGAATATCGAAACCAATAAACACCGGGAGTGCATGAATGTGTTAACAAGTGAACATTTAAGCTGTCTCTTGACAACCTTTTCCAAAATCTCT
Unaligned ( gi|16 ): AAAACTCACCACGATCAGTTCTTAAGGGTATTAAGACTCGTTTA