lowQualScore : 1111111111111111111111111111 111111111111111111111111111111111
lowQualScore : 1 1 1 1 3333333 0000000000000000000000000000 5555555555 444444444 666666666666 222222222 11 2222222 22222222222222222222 222222222222222222222222222222222 1 22222222222222 1111111 77777777777777777777777777777777777 11 22222 1111 555555555555555 22222222222 111 33333 1111 1 3333333 11 3333333 111 1111111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111 1 111 44444444444444444444444444 4444444444
lowQualScore : 5 6 5 3 2 5 9999999 9999999999999999999999999999 6 1111111111 99 111111111 333333333333 6 6 555555555 6 99 5 4 22 55 7777 3 0000000 2 44 7777777777 11111111111111111111 0 777 22 22 666 33 3 000000000000000000000000000000000 77 4 0 5 5 5 0 11111111111111 888 1 9999999 7 22222222222222222222222222222222222 3 33 11111 999 3 5555 99 111111111111111 6 99 55555555555 8 0 8 444 5 00000 1 8 4444 4 7777777 0 3 3 33 2 7 6 3333333 8 444 0 3 7777 77777 1111111111 2 444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 2222222222 2 22 2 4 4 333 555 33 2 2 5555 22222222222222222222222222 0 3 4444444444 55 4
lowQualScore : . . . . . . ....... ............................ . .......... .. ......... ............ . . ......... . .. . . .. .. .... . ....... . .. .......... .................... . ... .. .. ... .. . ................................. .. . . . . . . .............. ... . ....... . ................................... . .. ..... ... . .... .. ............... . .. ........... . . . ... . ..... . . .... . ....... . . . .. . . . ....... . ... . . .... ..... .......... . ... ................................................................................................. .. .......... . .. . . . ... ... .. . . .... .......................... . . .......... .. .
lowQualScore : 0 0 0 2 8 0 8888888 3333333333333333333333333333 0 0000000000 44 888888888 555555555555 7 0 555555555 7 55 0 0 22 00 7777 3 4444444 0 33 1111111111 55555555555555555555 5 000 55 55 000 11 0 777777777777777777777777777777777 88 5 2 0 7 0 0 66666666666666 888 4 0000000 2 55555555555555555555555555555555555 2 22 22222 666 0 4444 22 222222222222222 7 22 00000000000 0 8 0 000 0 88888 8 0 2222 8 2222222 3 7 2 88 5 3 0 2222222 0 000 1 1 7777 11111 7777777777 7 888 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 6666666666 0 11 0 0 7 777 666 11 5 7 3333 44444444444444444444444444 5 3 9999999999 00 4
consensus : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGGATATCGACAATCTT--GT-A-GTGTTCTAT-------------C-T--CNTANAC--TAGGTTTGTCCCACAT----AGGTTTGTGGCAC-ATGCTTGGACTTA-------CGTTATATCCTGTA-GTCACGCAAGATAAACAAGACGTCATATTTTGTTATACCCCTATATAT------TAT-TCTCTATATAATT-NA-ATACAAGAA-AAAG-NC--CAAC----AATCCCG-ATGTTCG-CC--TCGGACTGC-CGGTCCATTGAAAACT-CGATGTTG--G-------ACCG-----NCCG---GT----C-AACATCGNG-TT--T--TCAATGGAC---CGGT--ATGACGTC--------------ATTTCAT--A-------T-TCGTGGGTATTC-GGAGTAACTCGTAACT-ATCCGTGAATTGGTAT-GACTCGTCAATAG-T-GA--------A-----GGAACA---ATTGATTTGTTTAT-GGCTGCAGG---------------TG---AAA------------TTGTGATTTAA-NT--AAAAANAGATA---ATC--CTGTAAT-TGNT-TTT-TT---TTA-TTA--CA--------AT-TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCGAAATTG-T--AGCTTT-TGTATCATT----TATATCCACA--TA--ATGTAGANGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCT-AAA---TATCG-CGTTNA--TT-----CGC----------GA-AAGT-T-ACGCGTTANTTC--------CGCGA--AAAC-------TTTCGC--GN-GTT-AT-T-CGCGAA--A---ACGC-----GT---T--A-CGC---GCT--TAATT--CGCGA---------A-AAGT-T-CGCGTTAA---TTC--GC--GA-AACTTT----CGC-T--TATTT-CG-CAGAAACTTCGN-CGTTTA-TTCGCGAAA-AGTT-ACGCG--TTA-TTTCGCG
Reference ( gi|1 ) : ACACGCTTTATATTGCAATGTTCAGTAATGACATGTCAAACTTCGTCTAGACGTTGTAGATTACAGACATGTTTTACTGGCTATCGACAATCTT--CT-T-GTGTTCTAT-------------TGT--CCTACA---TAGATTTGTCT----T----AGGTTTGTGGCAC-ATGCTTGGACTTA-------TATTATATCATATACGTCACGCAAGATAAACACGACGTCATGTTTTGTTATATCCCTATATGT------CAT-TCTCTATATAATT-CA-ACACAAGAA-AAAG-AC--CAAT----AATCCCG-ATGTTCG-TC--TTGGACTGC-CGGTCCATTGAAAACT-CGATGTTG--G-------ACCG-----CCCA---GT----C-AACATCGTG-TT--T--TCAATGGAC---CAGT--ATAATGTC--------------AT---------------T-TCGTGGGTATTT-GGAATAACTCGTAACT-ATCCGTGAATTGGTAT-GACTCGTCAATAG-T-GA--------A-----GGAACA---ATTGATTTTTTTAT-GGCTGCAGG---------------TG---AAA------------TTGTGATTAAA-GT--AAAAACAAATA---ATC--CTGTAAT-TGGT-TTTGTT---TTA-TTA--CA--------AT-TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATT----TAAATCCACA--AG--ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGTCTTATATATATCCCT-AAA---TATCG-CGTTAA--TT-----CGC----------GA-AAGT-T-ACGCGTTGTTTCTCC----CCGCGAGAAAAC-------TTTTGC--GG-GTT-AT-T-CGCGAA--A---ACGC-----GT---T--A-CGC---ACT--TAATT--CGCGA---------A-AAGT-T-CGCGTTAA---TTA--GC--GA-AACTTT----CGC-T--TATTTCCG-CAGAAACTTTGC-CGTTTA-TTCGCGGAACAGTTAACGCG--TTA-TTTCGCG
gi|2 : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATT-CAAACATGTTTAATGGGATATCGACAATCTT--GT-A-GTGTTCTAT------------------CATAAAC--TAGGTTTGTCCCACAT----AGGTTTGTGGCAC-TTGCTTGGACTTA--------GTTATATC------------CAAGATAAACAAGACGTCATATTTTGTTATATCCCTATAT-T------TAT-TCTCTATATAATT-CA-ACACAAGAA-AAA---C--CATT----AATCCCG-ATATTCG-CC--TCGGACTGC-CGGTCCATTGAAAACT-CGATGTTG--G-------ACCG-----CCCG---GTC---C-AACATCGT--TT--T--TCAATGGAC---CAGT--ATGATGTC--------------ATTTCATGAATATTAA-T-TCGTGGGTATTTCGGAGTAACTCATAACT-ATCCGTGAATTGGTAT-GACTCGTCAATAG-T-GA--------A-----GGAACA---ATTNNNNNNNNNNN-NNNNNNNNNNNNNNATTGATTTGTTG---AAATTGCAGGTGAAATTGTGATTTAA-TTTAAAAAAAAGATA---ATC--CTGTAAT-T-GT-T---TT---TTA-TTA--TA--------AT-TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCAAAATTG-T--AGCTTT-TGTATCATT----TATATCCACA--TA--ATGTAGTAGTATAACAAAAGATTTAGGCC--TATTGACTT
gi|28 : acCACGATTTGTATTGCAATGTTCAGTGATGACATGTCAAACTATGTCTAGACGTTGTA
gi|10 : ACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGGATATCAACAATCTT--GT-A-GTGTTCTAT-------------CATAAACTACAGTGTAAGTTTGTCC----CACAAAGGTTTGTGGCAC-ATGCTTGGATTTA-------TGTTATATCCTGTAAGTCACGCAAG
gi|12 : TTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAAACATGTTTTAATGGATATCGACAATCTT--GT-A-GTGTTCTA----------------T--CATAAAC--TAGGTTTGTCCCACAT----AGGTTTGTGGCACTTTGCTTGGACTTA-------CGTTATATC----------CATAAGATAAACAAGACGTt
gi|24 : TGACATGTCAAACT-------GACGTTGTAGATTACAGGCATGTTTTAATGGATATCGACAATCTTAACTGTAGTGTTCTAT-------------
gi|25 : ATCTT--AT-A-GTGTTCTATCATAAAGTAGGTTTCT--CCT-TA---TAGGCTTGTCC----T----AGGTTTATGGTGC-ATGCGCGGAcataaactaggt
gi|23 : ----T----AGGTTTGTGGCAC-ATGCTTGGACTTACATTGTATATTATATCCTATACGTCACACAAGATAAACACGACGTCATATTTTGTTTTATCTCtct
gi|8 : caTTTTGTTATATCCCTATATGT------TAT-TCTCTATATAATT-CA-GCACAAGAA-AAAA-CC--CAAT----AATCCCG-ATGTTCG-CC--TTGGACTGC-CGGTCCATTGGAAACT-CGATGTTG--G-------ACCG-----CCCG---GT----C-AACATCGTG-TT--T--TCAATGGAC---CAGT--ATGATGTA--------------ATTTTATGAATATCAA-T-TCATGGGTATTT-GGAGTAATTCGTAACT-ATCCGTGAATTGGTA
gi|3 : aTTTGTTATATCCCTATAT-T------TATCTCTCTATATAATT-CA-ACACAAGAA-AAAGCGC--CATT----AATCCCG-ATATTCG-CC--TCGGACTGC-C-GTCCATTGAAAACT-CGATGTTG--G-------ACCG-----CCCGGTCGT----C-AACATCGT--TT--T--TCAATGGAC---CAGT--ATGATGTC--------------ATTTCATTGAATATTAAT-TCGTGGGTATTT-CGGATAACTCATAACTAATCCGTGAATTGGTAT-GACTCGTCAATAG-T-GA--------A-----GGAACAATTATTGATTTGTTGA--AATTGCAGG---------------TG---AAA------------TTGTGATTTAA-TT--TAAAAAAGATA---ATC--CTGTAAT-T-GT-TT--TT---TTA-TTAATTA--------AT-TGATTA-TACATGGCATTACTA---TGAA-AAAGTTCAAAATTG-TACAGCTTT-TGTATCATT----TATA-CCACA--TA--ATGTAGTAGT-TAACAAAAGA-TTAGGCC--TATTGA-TTTGG-ATCTGCCTTATA-A-ATCTCT-GAA---TATCG-CGTTAA--TTTATTACAC----------GA-AAGT-T-ACGCGTTAATTCGCTTACATCGCG---AAAG-------TTATGC-----ATTAAT-T-CGCGAA--A------------GT----------------------TT--CGCAA---------A-ACTT-T-CACGTTTA---TTC--GC--GA-AAGTTA----CGCGT--TATTTC
gi|6 : TTGTTATACCACTATATATGTATATCAT-TCTCTATGTAATT-AG-ATAGAAGAA-AAAG-TC--CAAC----AATCACA-ATGTTTG-T-------ACTGC-TGGTCCATTTAAAACT-CGATGTTG--G-------ACCA-----CTCG---GC----C-CACACCATATTT--T--TCAATGGAC---CTGT--ATGACATC--------------ATCTCAATGAATA----T-TCGTTGGTATTC-GGAATAACTCGTAACT-AC------ATAGATAT-GACTCGTCAATCG-TAGAACCCATATA-----TGAACA---ATTGATTTgc
gi|18 : TGTTATGCCCATAAATAT------TAT-TCTCTATATAACT-GA-ATACAAGAA-AAAG-TT--CAAC----AATCCCA-ATG------C--TTGGACTGC-TAGTCCATTGAAAACT-CGATGTTG--G-------ACCG-----GGCG---GT----T-A------TA-TT--T--TCAACGGcagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|5 : TGTTATACCCCTATATAT------CAT-TCTCTATATAATTATAGATACA-GTA-TATG-TC--AAAC----AATCCCG-ATGTTC---------------------TATTTAAAACT-CAATGCTG--G-------ACCA-----C---------------------------------------C---CAGT--CTGACGTC--------------AT---------------C-TCATGAATATT---------CTT-TAACT-ATCTGTGAAGTGGTAC-GACTCGTCTATTG-TAGA--------ACCCTTATAAGA---ACTGATTT
gi|14 : ATACAACT-GA-ATATAATAA-AAGG-AATACAATGAGAAATCCAGCAAATTCA-TTGTTTCGACAGCTCGATCCACTGAAAAAT-CAACCTTG--G-------ACTG-----CTCA---GT----CCAACAAAGGG-TT--T--CCAATGGA----CAGTTCA-AATGAC--------------GT---------------TATCATGTGTATcagtgataaaaagacttcagatcttgttcttttaataattgttcttttgttatcataaaaaacgacgttcctgtaatatgctttttgtatgacatttatcaaaatgagaaaagttggaaattgatgtttttgtatcatttataaacatatac
gi|27 : TATAATT-AG-ATACAAGAA-AAGG-TC--CAGC----AATCCCG-ATGTT-G-------GGACTGT-TGGTCCATTAAAA
gi|4 : ACAAGGGTAAAT-AC--TAAT----AATCCCG-ATGTTTG-CC--TCGGACTGC-CGGTCCATTGAAAACT-CGATGTTG--GTCAATGGACCG-----CCCG---GT----C-AACATGGTG-TT--T--TCAATGGAC---CAGT--ATGACGTC--------------ATTTTATGAATA-----T-TCCTGGGTATTC-GGAGTAACTCGTAACT-ATTCGTGAATTGGTATCGATTTGTTTATGGCT-GC--------A-----GGTGAA---ATTG---------T-GATTA-AAG---------------TA---AAA------------C----AT--AA-AT--AAA---AGATA---TTC--CTGTAAT-T-GT-TTTTTT---TTA-TTA--CAATATAATTAT-TGATTG-TACAT-GCCTTACTA---TGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATT----TATATCCACA--TA--ATGTGGAGGTATAACAAAACATTTAGGCCTATATTGACTcc
gi|19 : ctCAAGAA-AAAG-TC--CAAC----AATCCCG-ATGTTCACCC--CCCCCCCCC-CGGTCCATTGATTAAT-CAATATTG--G-------ACCG-----ACCG---GT----T-GACATCATG-TT--T--TAAATGGAC---CGGT--ATGACGTC--------------AT---------------C-T
gi|30 : -AC--CAAT----AATCCCG-ATGTTCG-CC--TAGGACTGC-CGGTCCATTGAAAACT-CGATGTTtctgaat
gi|9 : CG-ATGA-CG-TC----GGATTG----GTC-ATTGGAAACT-CAATGATA--G-------GCTG-----AACA---GTT---C-TACATGGAG-TT--T--TCAGTGGAC---CGG
gi|14 : tggttatatctgtatatctttataactaatttcttatatatacatctaagtgtatacaggcactgtgcatgtCG-TCATTTGAACTG-----TCCATTGGAAACC-CTTTGTTG--G-------ACTG-----AGCA---GTC---C-AAGGTTGAT-TT--T--TCAGTGGAT---Cacgcactaggatttcgcgggccatcgggctaacttgtaatatat
gi|15 : atacaactgaatataataaaaggaatacaatgagaaatccagcaaattcattgtttcgacagctcC--TCGGACTGC-CAGTCCATTGAAAACT-CGATGAAG--A-------A-----------A---GT----T---CA--GTA-TTAAT--TCG-TGAA-----AAT---TAAT------------------------------------TCGTGGGTATTT-AGAGTAACTCGTGACT-ATCCGTGAATTGGTAT-GAATCATCAATAG-T-GA--------A-----GGAACA---ATTGATttatcatgtgtat
gi|2 : TAC-TGGTCCATTGAAAAA--CGATGTTG--G-------ACCG-----GGCG---GT----CCAACATCGAG-TT--T--TCAATGGAC---CGGC--A
gi|3 : acacacgatttgtattgcaatgttcagtaatgacatgtcaaactccgtctagacgttgtagattcaaacatgtttaatgggatatcgacaatcttgtagtgttctatcataaactaggtttgtcccacataggtttgtggcacttgcttggacttagttatatccaagataaacaagacgtcatattttgttatatccctatatttattctctatataattcaacacaagaaaaaccattaatcccgatattcgcctcggacTAC-TGGTCCATTGAAAAA--CGATGTTGACG-------ACCG-----GGCG---GT----CCAACATCGAG-TT--T--TCAATGGACGG-CAGT--tgatgtcatttcatgaatattaattcgtgggtatttcggagtaactcataactatccgtgaattggtatgactcgtcaatagtgaaggaacaattnnnnnnnnnnnnnnnnnnnnnnnnnattgatttgttgaaattgcaggtgaaattgtgatttaatttaaaaaaaagataatcctgtaattgttttttattataattgattatacatgcattactatgaagaaagttcaaaattgtagcttttgtatcatttatatccacataatgtagtagtataacaaaagatttaggcctattgactt
gi|4 : tttgttatatccctatatttatctctctatataattcaacacaagaaaaagcgccattaatcccgatattcgcctcggTAC-TGGTCCATTGAAAACA-CCATGTTG----------ACCGGGCGGTCCA---TTGAC-C-AACATCGAG-TT--T--TCAATGGAC---CGGC--Atgatgtcatttcattgaatattaattcgtgggtatttcggataactcataactaatccgtgaattggtatgactcgtcaatagtgaaggaacaattattgatttgttgaaattgcaggtgaaattgtgatttaatttaaaaaagataatcctgtaattgtttttttattaattaattgattatacatggcattactatgaaaaagttcaaaattgtacagcttttgtatcatttataccacataatgtagtagttaacaaaagattaggcctattgatttggatctgccttataaatctctgaatatcgcgttaatttattacacgaaagttacgcgttaattcgcttacatcgcgaaagttatgcattaattcgcgaaagtttcgcaaaactttcacgtttattcgcgaaagttacgcgttatttcgc
gi|8 : ctacaagggtaaatactaataatcccgatgtttgcctcggacTAC-TGGTCCATTGAAAACA-CGATGTT---G-------ACCG-----GGCG---GTC---C-AACATCGAG-TT--T--CCAATGGAC---CGGC--Atgacgtcattttatgaatattcctgggtattcggagtaactcgtaactattcgtgaattggtatcgatttgtttatggctgcaggtgaaattgtgattaaagtaaaacataaataaaagatattcctgtaattgtttttttttattacaatataattattgattgtacatgccttactatgaagaaagttcaaaattgttgtttttgtatcatttatatccacataatgtggaggtataacaaaacatttaggcctatattgact
gi|19 : attttgttatatccctatatgttattctctatataattcagcacaagaaaaaacccaataatcccgatgttcgccttggacTAC-CGGTCCATTTAAAACA-TGATGTCA----------ACCG-----GTCG---GT----CCAATAT--TG-AT--TAATCAATGGAC---CGGtgatgtaattttatgaatatcaattcatgggtatttggagtaattcgtaactatccgtgaattggta
gi|9 : caagaaaaagtccaacaatcccgatgttcacccccccccccC-CGGTCCACTGAAAACT-CCATGTAG--A-------ACTG-----TTCA---GC----CTATCATTGAG-TT--T--CCAAT-GAC---CAAT--CCGACGTCATCGACGCACTAGGAT---------------T-TCGCGGGCCATC-GGGCTAACTTGTAA-T-ATtgacgtcatcttctgaat
gi|6 : tggttatatctgtatatctttataactaatttcttatatatacatctaagtgtatacaggcactgtgcatgtGGTCCATTGAAAAATATGGTGT-G--G-------GCCG--------A---GTGGTCC-AACATCGAG-TT--T--TAAATGGAC---CAGC--Aat
gi|18 : ttgttataccactatatatgtatatcattctctatgtaattagatagaagaaaaagtccaacaatcacaatgtttgtacCCGTTGAAAAT----ATA-------------ACCG-----CCCG---GT----CCAACATCGAG-TT--T--TCAATGGAC---TAGC--Atgtatgacatcatctcaatgaatattcgttggtattcggaataactcgtaactacatagatatgactcgtcaatcgtagaacccatatatgaacaattgatttcagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|30 : tgttatgcccataaatattattctctatataactgaatacaagaaaaagttcaacaatcccaatgcttggac-AACATCGAG-TT--T--TCAATGGAC---CGGC--A
gi|15 : accaataatcccgatgttcgcctaggacCATCGAG-TT--T--TCAATGGACTGGCAGT--
gi|17 : ctcggGAATTGGTAT-GAATCATCAATAG-T-GA--------A-----GGAACA---ATTGA-CTTGTTATCGGCTGAGGG---------------TGAAAAAA------------TTGTGATTAAATGT--AAACATAAAAACAGATCTTCTGTAAT-TGTA-TTTA-T---TTA---A--CA--------AT-TGATTaagaaagttcagtattaattcgtgaaaattaattcgtgggtatttagagtaactcgtgactatccgtgaattggtatgaatcatcaatagtgaaggaacaattgat
gi|34 : TCAACAG-T-GA--------A-----GAAACA---ATTGATTTGTTTAT-GGCTGCAGG---------------TG---AA
gi|20 : AAACAGATA---TTC--CTGTAATATGCTCCTTG------TA-TTA--CA---------------TAGTACAT-GTATCAAAA---T-AAGAAAGTTGGAAATTG---------A-TGTAT-ATA----CAGATATAC--------TGGTGATGTATAACAAAAC
gi|16 : TT--CTGTAATATGCT-TTT--TAAATTACTTA--CA--------ATGTGTATA-TAC-T-ATATTATCAAAATGTACAAAGTTGGAAATTGAT--GGTTTTGTGTGTCATTGGTATACATATACGCCAGTGAGGTAAATGTATAACAAAACA
gi|31 : atgtTT----TATATCCACA--TA--ATGTGGAGGTATAACATGACATGTAGGCC--TATTGGCTTTG
gi|11 : GGAATCTGCCTTATA-A-ATCTCT-GAA---TATC
gi|26 : GAATGTGCCTTGTGTAT----CTGAAA---TAGCGACGTTAA--TT-----CGT----------GA-AAGT-TAACGCGT--TTTAT-T----CCGCGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcaaaactttcacgtttattcgcgaaagttacgcgttatttcgcg
gi|7 : aATTTATTCCA-AAAAGTTA-CG-CGTTTA--TT-----CGCAATATAACGCGA-ACGC-T-ACGCGTTTATT---------CGTG---AAAC-------TTTTGC-----ATT-ATAT-CGC
gi|33 : tatgtgagaatgcgttataacgcgataaggacgcgttaattcgcgaatttgtagcgctatgacacaaaagttacgc-AAG---TTTCG-AGTTTA--TT-----CGC----------GA-AAGT-T-TCGCGTTagttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|22 : gcgtttatttgcgaATCG-TGTTTA--TA-----CGC----------GA-AAGT-A-TCGCGTTGATT---------CGCG---AAAG-------TTTCGCAAAA-GT---T-T-CGCG--------TTGA-----GT---T--A-CGC---G-T--TATTT--CGC-A---------A-AAGT-TACGC
gi|32 : caaATCG-TGTT----TT-----CGC----------GA-AAGT-T-TCGCGTTATTTC
gi|11 : tgcaatacaaTCA-CGTTTA--TT-----CGC----------GA-AAGT-T-ACGCGTTATTTCgcgaa
gi|7 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcaaaacttCG-CGTTAA--TT-----CGC----------GA-ATTTGT-A-GCGCTAT------------GACACAAAAG-------TTACGC--AT--TT-AT-T-C-CAAA--A---A--------GT---T--A-CGC---GTT--TA-TT--CGCAATATAACGCGA-ACGC-TACGCGTTTA---TTC--GT--GA-AACTTT----TGCAT--TATAT-CG-CAGgcg
gi|29 : tatgtgagaatgcgttataacgcgataaggaCG-CGTTAT--TT-----CGC----------GA-AAGT-T-ACGCGttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|7 : gttaG-CGTTAT--AA-----CGC----------GATAAGG---ACGCGTTAATTC---------GCGAA-------------TTTGT--AGCGCT-AT-GACACAAA--A------------GT---T--A-CGC---ATT--T-ATT--C-CAA---------A-AAGT-TACGCGTTTA---TTC--GC--AA------------------TA-TAACG-C--GAACGCTACGCGTTTA-TTCGTGAAACTTTT---GCA--TTA-TATCGCcaaatttgcgaaagtttcgcgtaata
gi|22 : tatgtgagaatG-CGT-AACTTT-----TGC----------GA-AA-T-A-ACGCGTAA---CTCA----ACGCGA---AAC-------TTTTGC--GA-AAC-TT-T-CGCGAATCA---ACGC-----GA---T--A-Cagttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|33 : caaatcgtgtttatacgcgaaaG-CGTTTA--TT-----TGC----------GA-AAGT-T-TCGAGTTTATT---------CGCG---AAAG-------TTTCGC--G
gi|13 : -CGTTTA--TT-----CGC----------AA-ACGT-T-ACGCGT--TTTATTA----TTGCG----AACG------TTTTGC-----GTT-A--T-CGCGGA--A------------TT---T--A-CGC----TT--TTATT----CGA---------G-AACT-T---CGTTGT---TTA------------TTT----CGC-TTGTATTTTTT-CAGATACtt
gi|35 : atcgcgtttatttcgaaagttaaTTCA--TT-----CGC----------GA-AAGT-T-ACGCGTTATTTCgaaaatgatcaatgggctttaattgacttt
gi|3 : GC----------GA-AA-T-A-ACGCGTAACTTT--------CGCGAATAAACGTGAAAGTTTTGC--GA-AAC-TT-T-CGCGAATTA---ATGC-----A----T--A-------ACT-----TT--CGCG------------ATGT-A-AGCG--AA---TTAACGC--GT-AACTTT----CGgcg
gi|11 : tttgttatatccctatatttatctctctatataattcaacacaagaaaaagcgccattaatcccgatattcgcctcggactgccgtccattgaaaactcgatgttggaccgcccggtcgtcaacatcgtttttcaatggaccagtatgatgtcatttcattgaatattaattcgtgggtatttcggataactcataactaatccgtgaattggtatgactcgtcaatagtgaaggaacaattattgatttgttgaaattgcaggtgaaattgtgatttaatttaaaaaagataatcctgtaattgtttttttattaattaattgattatacatggcattactatgaaaaagttcaaaattgtacagcttttgtatcatttataccacataatgtagtagttaacaaaagattaggcctattgatttggatctgccttataaatctctgaatatcgcgttaatttattacaAAAAC-------TTTCAC--GT--TT-AT-T-CGCGAA--A------------GT---T--A-CGC---G-T--TATTT--CGCG
gi|29 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcTTAC--GC-GTT-AT-TTCGCGAA--A------------GT---T--A-CGC---GC---AAATT--TGCGA---------A-AGTT-T-CGCG-TAA---T
gi|3 : gTT-AT-TACACGAA--AGTTACGC-----GT---T--AATTC---GCT--TACAT--CGCG----------A-AAGT-TATGCATTAA---TTC--GC--GA-AAGTTT----CGC---------------AAAACTTTCA-CGTTTA-TTCGCGAA--AGTT-ACGCG--TTA-TTTCGCa
gi|13 : tttgttatatccctatatttatctctctatataattcaacacaagaaaaagcgccattaatcccgatattcgcctcggactgccgtccattgaaaactcgatgttggaccgcccggtcgtcaacatcgtttttcaatggaccagtatgatgtcatttcattgaatattaattcgtgggtatttcggataactcataactaatccgtgaattggtatgactcgtcaatagtgaaggaacaattattgatttgttgaaattgcaggtgaaattgtgatttaatttaaaaaagataatcctgtaattgtttttttattaattaattgattatacatggcattactatgaaaaagttcaaaattgtacagcttttgtatcatttataccacataatgtagtagttaacaaaagattaggcctattgatttggatctgccttataaatctctgaatatcgcgttaatTT-AT-T-CGCAAA---------C-----GT---T--A-CGC---GTT--TTATTATTGCGA---------A-CGTT-T-TGCGTTA-----TC--GC--GG-AATTTA----CGC-T--TTTATTCG--AGAA-CTTCGT-TGTTTATTTCGC
gi|35 : atcgcgtttatttcgaaagttaacgtTC-AT-T-CGCGAA--A------------GT---T--A-CGC---G-T--TATTT--CGCGttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|33 : tTT-AT-T-TGCGAA--A------------GT---T--T-CG----AGT--TTATT--CGCGA---------A-AGTT-T-CGCGTT
gi|13 : gcgtT-C-CGCGAT--A---ACGCAAAACGT---T----CGC---AATAATAAAA--CGCGT---------A-ACGT-T-TGCG--AA---TAA--AC--GTTAACTTT----CG
gi|22 : atcgcgtttatttT-T-TGCGAA--ATA-ACGC-----GTAACTCAA-CGCGAAACT--T---T--TGCGA---------A-ACTT-T-CGCG--AA---TCAACGC--GA-TACTTT----CGC-G--TATatttacgcttttattcgagaacttcgttgtttatttcgcttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|11 : caaatcgtgttt-T-CGC-AA--A---AC--------T---T--T-CAC---GTT--TA-TT--CGCG----------A-AAGT-TACGCGTTAT---TTC--GC--Gagttacgc
gi|3 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCGAA--ATA-ACGC-----GT------A-------ACT--T---T--CGCGA---------ATAAA------CGTGAAAGTTTT--GC--GA-AACTTT----CGC-G--AATTAATG-CATAACTTTCGC-GATGTA---AGCG----AATTAACGCG--TAACTTTCGTG
gi|7 : tttgttatatccctatatttatctctctatataattcaacacaagaaaaagcgccattaatcccgatattcgcctcggactgccgtccattgaaaactcgatgttggaccgcccggtcgtcaacatcgtttttcaatggaccagtatgatgtcatttcattgaatattaattcgtgggtatttcggataactcataactaatccgtgaattggtatgactcgtcaatagtgaaggaacaattattgatttgttgaaattgcaggtgaaattgtgatttaatttaaaaaagataatcctgtaattgtttttttattaattaattgattatacatggcattactatgaaaaagttcaaaattgtacagcttttgtatcatttataccacataatgtagtagttaacaaaagattaggcctattgatttggatctgccttataaatctctgaatatcgcgttaatttattaGTGAG--A---ATGC-----GT---T--A------------TAA----CGCGA---------T-AAGG-A-CGCGTTAA---TTC--GC--GA-A--TTTGTAGCGC----TAT----GACACAAAAGTTACGCATTTA-TTC-CAAAA-AGTT-ACGCG--TTT-ATTCGC
gi|29 : tat-----GT---T--A-CGC---G-T--TATTT--CGCG----------A-AAGT-TACGCGCAAA---TTT--GC--GA-AAGTTT----CGC-G--TAaatataacgcgaacgctacgcgtttattcgtgaaacttttgcattatatcgcagttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|22 : T--TTATA--CGCGA-----------AAGTAT-CGCGTTGA---TTC--GC--GA-AAGTTT-----------------CG-CAAAAGTTTCG--CGTT------G------AGTT-ACGCG--TTA-TTTCGCata
gi|35 : caaatcgtgT--TCATT--CGCG----------A-AAGT-TACGCGTTAT---TTC--GC--Gaaaagttacgc
gi|32 : TT--CGCGA---------A-AGTT-T-CGCGTTAT---TTC--GC--GA-A
gi|33 : tgcaatacaaatcgtgtt--CGCGA---------A-ACTT-T-CGCG--AA---TAA--ACTCGA-AACTTT----CGC-
gi|29 : gcgtttatttA---TTAC-GC--GA-AACTTT----CGC-A--AATTTGCG-C-GTAACT------------TTCGCGAAA----TAACGCG--Ttt
gi|33 : gtt----CGT-T--TATTT--G-C-GAAAGTTTCG-AGTTTA-TTCGCGAA--AGTT-TCGCG--TTa
gi|11 : gCG-CA-AAACTTTCA-CGTTTA-TTCGCGAA--AGTT-ACGCG--TTA-TTTCGCG
gi|26 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt-CGTTAA-TTCGTGAAA--GTTAACGCGTTTTA-TTCCGCG
gi|32 : agaatgtgccttgtgtatctgaaatagcga-CGTGTT-TTCGCGAAA--GTTT-CGCG--TTA-TTTCGCGa
gi|35 : tgcaatacaaatTTCA-TTCGCGAAA--GTTA-CGCG--TTA-TTTCGCGaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): AAACCCAGATGTTCCTGTAATATGCTATTTATATGCATATATTGAAATGACGAAAATTGGATATCAATGTTTTTGTATCTTCATATACATATAATGGTG
Alignments
lowQualScore : 1111 333 22222222 11 222222222 33333333 44444444444 11111111 1111 1111111 111 111 7777777777777777777777777777 22222222222222 22222 666666666666666666666666666666666666 2222222222222222222 22222222 1 22 22222222 111 11111 11111111 11 2222 1 11111 111 444444444444444444444444444 22222 1 2222222222 11 1111 222222222 1111111 11
lowQualScore : 5 0 0 8 4444 999 1 1 44444444 11 666666666 6 22222222 33333333333 1 3 66666666 5 5555 1 3 55 555 1 2 2 1111111 1 3 333 0 000 4 777 1111111111111111111111111111 4 4 4 4 8 00000000000000 777 8888 00000 999999999999999999999999999999999999 5555555555555555555 00000000 1 5 55 5 33 5 66 5 66 33333333 5 1 5 0 000 3 0 99999 2 5 2 88888888 1 0 11 3 5555 0 0 5 6 44444 8888 5 222 444444444444444444444444444 0 8 77777 9 5 77 7777777777 88 3 1 4444 333333333 2 5 3333333 6 3 88 8
lowQualScore : . . . . .... ... . . ........ .. ......... . ........ ........... . . ........ . .... . . .. ... . . . ....... . . ... . ... . ... ............................ . . . . . .............. ... .... ..... .................................... ................... ........ . . .. . .. . .. . .. ........ . . . . ... . . ..... . . . ........ . . .. . .... . . . . ..... .... . ... ........................... . . ..... . . .. .......... .. . . .... ......... . . ....... . . .. .
lowQualScore : 2 8 8 0 2222 777 0 0 22222222 22 777777777 7 44444444 44444444444 4 0 77777777 7 6666 0 6 66 888 4 9 9 8888888 0 6 666 5 222 6 000 1111111111111111111111111111 4 4 7 4 9 99999999999999 888 4444 00000 000000000000000000000000000000000000 0000000000000000000 77777777 0 7 77 0 22 0 99 0 99 11111111 7 4 7 3 000 0 7 66666 7 7 2 11111111 0 8 00 2 2222 8 0 7 6 33333 3333 0 111 777777777777777777777777777 8 0 77777 6 4 99 9999999999 99 2 0 2222 888888888 5 2 8888888 7 8 66 0
consensus : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTA---TCATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTAC-------GTTATATCCTAT-ACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATAT------CAT-TCTCTATATAAT----TNAATACAAGAA-AAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCGGT-C---AACATCGTG-TTTTCAATGGACCAGT---ATGACGTCAT---CTC-----A-T--A------A----TTCGTGGGTA-TT-CGGAGTAACTCGTAACTA-TCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATT---GATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATANTCCTGTAATATGC-TTT-TT--TTA-TTA--CAAT--------TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCGAAATTG-T--NGTTTT-TGTATCATTTATATCCACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCT-GAATATCG-CGTTAATT-----CGCGAAAGT-T-NCGCG-TT-ANTT----CCGC--GAAAG-TTTCGC--GNGTTAT-TCGCGAAAACGCGTTACGCG-TTAATT--CGCGA---------AAAGTTACGCGTTAATTCGCGAAACTTT----CGC-TTAT-NT-CGCAGAAACTTCGNCGTTTA-TTCGCGAAA-AGTT-ACGCGTTATTTCGCG
Reference ( family-907 ) : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTATC-TCNTANAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTAC-------GTTATATCCTGT-A-GTCACGCAAGATAAACAAGACGTCATATTTTGTTATACCCCTATATAT------TAT-TCTCTATATAAT----TNAATACAAGAA-AAAGN-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGNCCGGT-C---AACATCGNG-TTTTCAATGGACCGGT---ATGACGTCAT---TTC-----A-T---------A----TTCGTGGGTA-TT-CGGAGTAACTCGTAACTA-TCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATT---GATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------ANA-GATAATCCTGTAAT-TGNTTTT-TT--TTA-TTA--CAAT--------TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCGAAATTG-T--AGCTTT-TGTATCATTTATATCCACATA--------ATGTAGANGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCT-AAATATCG-CGTTNATT-----CGCGAAAGT-T-ACGCG-TT-ANTT----CCGC--GAAAACTTTCGC--GNGTTAT-TCGCGAAAACGCGTTACGCGCTTAATT--CGCGA---------AAAGTT-CGCGTTAATTCGCGAAACTTT----CGC-TTAT-TT-CGCAGAAACTTCGNCGTTTA-TTCGCGAAA-AGTT-ACGCGTTATTTCGCG
gi|1 : ACACGCTTTATATTGCAATGTTCAGTAATGACATGTCAAACTTCGTCTAGACGTTGTAGATTACAGACATGTTTTACTGG-CTATCGACAATCT----TCTTGTGTTCTATTGTCCTACA--------TAGATTTGTCT--------------TAGGTTTGTGGCAC-ATGCTTGGACTTAT-------ATTATATCATAT-ACGTCACGCAAGATAAACACGACGTCATGTTTTGTTATATCCCTATATGT------CAT-TCTCTATATAAT----TCAACACAAGAA-AAAGA-CCAATAATCCCGATGTTCGTCTTGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCAGT-C---AACATCGTG-TTTTCAATGGACCAGT---ATAATGTCAT----------------------------TTCGTGGGTA-TT-TGGAATAACTCGTAACTA-TCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATT---GATTT--TTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAA--------ACA-AATAATCCTGTAAT-TGGTTTTGTT--TTA-TTA--CAAT--------TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTAAATCCACAAG--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGTCTTATATATATCCCT-AAATATCG-CGTTAATT-----CGCGAAAGT-T-ACGCG-TT-GTTTCTCCCCGCGAGAAAACTTTTGC--GGGTTAT-TCGCGAAAACGCGTTACGCACTTAATT--CGCGA---------AAAGTT-CGCGTTAATTAGCGAAACTTT----CGC-TTAT-TTCCGCAGAAACTTTGCCGTTTA-TTCGCGGAACAGTTAACGCGTTATTTCGCG
gi|10 : ACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCAACAATCT----TGTAGTGTTCTA---TCATAAACTACAGTGTAAGTTTGTCC-CACA---------AAGGTTTGTGGCAC-ATGCTTGGATTTAT-------GTTATATCCTGTAA-GTCACGCAAG
gi|11 : GGAATCTGCCTTATA-A-ATCTCT-GAATATCt
gi|11 : T-CGCA-AAACTTTCACGTTTA-TTCGCGAAA--GTT-ACGCGTTATTTCGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcaaaactttcacgtttattcgcgaaagttacgcgttatttcgcg
gi|12 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAAACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTA---TCATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCACTTTGCTTGGACTTAC-------GTTATATC-----------CATAAGATAAACAAGACGT
gi|13 : CGCG-TTTATTT----C-----GAAAG--TTAAC--GT-TTAT-TCGCAAA----CGTTACGCGTTTTATTATTGCGA---------ACGTTT-TGCGTTA--TCGCGGAATTTA----CGC-TTTTATT-CG-AGAA-CTTCGTTGTTTATTTCGC
gi|14 : atATATAATAAAAGGAATACAATGA-GAAAT-CCAGCAAATTCATTGTT----TCG-ACAGCTC-GATCCACTGAAAAATCAACCTTGG-------ACTGCTCAGT-CC--AACAAAGGG-TTTCCAATGGACAGTTCAAATGACGTTA-----TC-----A-T---------G----Tttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|15 : atacaactgaCTCGGACTGC-C-AGTCCATTGAAAACTCGATGgtat
gi|15 : ---------A----TTCGTGGGTA-TT-TAGAGTAACTCGTGACTA-TCCGTGAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACAATT---GATaagaaagttcagtattaattcgtgaaaattaattcgtgggtatttagagtaactcgtgactatccgtgaattggtatgaatcatcaatagtgaaggaacaattgat
gi|16 : ctcggactgccagtccattgaaaactcgatgaagaaagttcagtattaattcgtgaaaattaTTCTGTAATATGCTTTT-TAAATTACTTA--CAATG-------TGTATA-TAC-T-ATATTATCAAAATGTACAAAGTTGGAAATTGAT--GGTTTTGTGTGTCATTGGTATACATATACGCCAGTGAGGTAAATGTATAACAAAACA
gi|17 : atgtGAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACAATT---GACTT--G-TTATC----GGCTGAGGG---------------TGAAAA-AA------------TTGTGATTAAATGTAAACAT--A----AAA--------ACA-GAT-CTTCTGTAAT-TGTATTT-AT--TTA---A--CAAT--------TGATT
gi|18 : TGTTATGCCCATAAATAT------TAT-TCTCTATATAAC----TGAATACAAGAA-AAAGT-TCAACAATCCCAATG-----CTTGGACTGC-T-AGTCCATTGAAAACTCGATGTTGG-------ACCGGGCGGT-T---A------TA-TTTTCAACGG
gi|19 : CAAGAA-AAAGT-CCAACAATCCCGATGTTCACCCCCCCCCCC-CCGGTCCATTGATTAATCAATATTGG-------ACCGACCGGT-T---GACATCATG-TTTTAAATGGACCGGT---ATGACGTCAT---CT
gi|2 : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATT-CAAACATGTTT-AATGGGATATCGACAATCT----TGTAGTGTTCTATC---ATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-TTGCTTGGACTTA--------GTTATATCC-------------AAGATAAACAAGACGTCATATTTTGTTATATCCCTATAT-T------TAT-TCTCTATATAAT----TCAACACAAGAA-AAA---CCATTAATCCCGATATTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCGGTCC---AACATCGT--TTTTCAATGGACCAGT---ATGATGTCAT---TTC-----A-TGAATATTA-A----TTCGTGGGTATTT-CGGAGTAACTCATAACTA-TCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATT---NNNNN--NNNNNN-----NNNNNNNNNNNNNNATTGATTTGTTG---A-AATTGCAGGTGAAATTGTGATT-----TAA--TTTAA----AAA--------AAA-GATAATCCTGTAAT-TG---TT-TT--TTA-TTA--TAAT--------TGATTA-TACAT-GCATTACTA---TGAAGAAAGTTCAAAATTG-T--AGCTTT-TGTATCATTTATATCCACATA--------ATGTAGTAGTATAACAAAAGATTTAGGCC--TATTGACTTtctgaat
gi|20 : acAA--------ACA-GATATTCCTGTAATATGC-TCC-TT--GTA-TTA--CA--------------TAGTACAT-GTATCAAAA---T-AAGAAAGTTGGAAATTG----A------TGTA-----TATACAGATATA--------CTGGTGATGTATAACAAAAC
gi|22 : ATCG-TGTTTATA-----CGCGAAAGT-A-TCGCG-TT-GATT-----CGC--GAAAG-TTTCGCAAAAGT--T-TCGCG---TTGAGTTACGCG-TTATTT--CGC-A---------AAAGTTACGC
gi|23 : caaCA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACATTGTATATTATATCCTAT-ACGTCACACAAGATAAACACGACGTCATATTTTGTTTTATCTC
gi|24 : TGACATGTCAAACT-------GACGTTGTAGATTACAGGCATGTTTTAATGG-ATATCGACAATCTTAACTGTAGTGTTCTA---TCATAAAC-------TAGGT
gi|25 : ATCT----TATAGTGTTCTA---TCATAAAG-------TAGGTTTCTCCTTATAGGCTTGTCCTAGGTTTATGGTGC-ATGCGCGGA
gi|26 : GAATGTGCCTTGTGTAT----CTGAAATAGCGACGTTAATT-----CGTGAAAGT-TAACGCGTTT-TATT----CCGC--GAtct
gi|27 : aTATAAT----TAGATACAAGAA-AAGGT-CCAGCAATCCCGATGTT-G----GGACTGT-T-GGTCCATTAAAA
gi|28 : CACGATTTGTATTGCAATGTTCAGTGATGACATGTCAAACTATGTCTAGACGTTGTAcc
gi|29 : GTTACGCG-TTATTT--CGCG----------AAAGTTACGCGCAAATTTGCGAAAGTTT----CGC-GTA
gi|3 : TTTGTTATATCCCTATAT-T------TATCTCTCTATATAAT----TCAACACAAGAA-AAAGCGCCATTAATCCCGATATTCGCCTCGGACTGC-C-G-TCCATTGAAAACTCGATGTTGG-------ACCGCCCGGT-CGTCAACATCGT--TTTTCAATGGACCAGT---ATGATGTCAT---TTC-----A-TTGAATATTAA----TTCGTGGGTA-TTTCGGA-TAACTCATAACTAATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATTATTGATTT--GTTGA------AATTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--TT--T----AAA--------AAA-GATAATCCTGTAAT-TG--TTT-TT--TTA-TTAATTAAT--------TGATTA-TACATGGCATTACTA---TGAA-AAAGTTCAAAATTG-TACAGCTTT-TGTATCATTTATA-CCACATA--------ATGTAGTAGT-TAACAAAAGA-TTAGGCC--TATTGA-TTTGG-ATCTGCCTTATA-A-ATCTCT-GAATATCG-CGTTAATTTATTACACGAAAGT-T-ACGCG-TT-AATT-----CGC-------------------TTACATCGCGAAA----GTTATGCA-TTAATT--CGCG----------AAAGT----------TTCGCAAAACTTT----C------------------------ACGTTTA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCata
gi|30 : -CCAATAATCCCGATGTTCGCCTAGGACTGC-C-GGTCCATTGAAAACTCGATGTT
gi|31 : aTTTATATCCACATA--------ATGTGGAGGTATAACATGACATGTAGGCC--TATTGGCTTTG
gi|32 : ACACGATTTGTATTGCA
gi|32 : ATCG-TGTT--TT-----CGCGAAAGT-T-TCGCG-TT-ATTT-----CGC--GAAtttcgcgaaagtttcgcgttatttcgcgaa
gi|33 : tgcaatacaaG-CGTTTATT-----TGCGAAAGT-T-TCGAG-TT-TATT-----CGC--GAAAG-TTTCGC--G
gi|34 : TCAACAGT-GA--------A-----GAAACAATT---GATTT--GTTTAT-----GGCTGCAGG---------------TG---A-Att
gi|35 : TTCA-TTCGCGAAA--GTT-ACGCGTTATTTCGCG
gi|4 : TACAAGGGTAAATA-CTAATAATCCCGATGTTTGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGGTCAATGGACCGCCCGGT-C---AACATGGTG-TTTTCAATGGACCAGT---ATGACGTCAT---TTT-----A-TGAAT-----A----TTCCTGGGTA-TT-CGGAGTAACTCGTAACTA-TTCGTGAATTGGTA---------------------------------------TC---GATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAACATAAATAAAA-GATATTCCTGTAAT-TGTTTTT-TT--TTA-TTA--CAATATAATTATTGATTG-TACAT-GCCTTACTA---TGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTATATCCACATA--------ATGTGGAGGTATAACAAAACATTTAGGCCTATATTGACT
gi|5 : cTGTTATACCCCTATATAT------CAT-TCTCTATATAATTA--TAGATAC-AGTA-TATGT-CAAACAATCCCGATGT-------------------TCTATTTAAAACTCAATGCTGG-------ACCACCCAGT-C---------------------------------TGACGTCAT---CTC-----A--------------------TGAATA-TT-C-------TT--TAACTA-TCTGTGAAGTGGTACGACTCGTCTATTGTAGA--------ACCCTTATAAGAACT---GATTTCAG-TGATAAAAAGACTTCAGATCTTGTTCTTT----TA---ATAA------------TTGTTCTT-----TTG--TT--ATCATAAA--------AAACGACGTTCCTGTAATATGC-TTT-TT--GTA-TGA--C-AT--------TTATCA-AA------------A---TGAGAAAAGTTGGAAATTG-A--TGTTTT-TGTATCATTTATAAACATATA--------
gi|6 : TTGTTATACCACTATATATGTATATCAT-TCTCTATGTAAT----TAGATAGAAGAA-AAAGT-CCAACAATCACAATGTTTGT-----ACTGC-T-GGTCCATTTAAAACTCGATGTTGG-------ACCACTCGGC-C---CACACCATATTTTTCAATGGACCTGT---ATGACATCAT---CTCAATGAA-T---------A----TTCGTTGGTA-TT-CGGAATAACTCGTAACTA-C------ATAGATATGACTCGTCAATCGTAGAACCCATATA-----TGAACAATT---GATTT--c
gi|7 : GTGAGAATGCGTTA------TAA----CGCGA---------TAAGGA-CGCGTTAATTCGCGAA--TTTGTAGCGC--TAT-GA-CACAAAAGTTACG-CATTTA-TTC-CAAAA-AGTT-ACGCGTTTATTCGCcagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|7 : tatCG-CGTTAATT-----CGCGAATTTGT-A-GCG-CT-A-TG----ACAC---AAAAGTTACGC--AT-TTAT-TC-CAAAAA---GTTACGCGTTTA-TT--CGCAATATAACGCGAACGCTACGCGTTTATTCGTGAAACTTT----TGCATTAT-AT-CGCAGaatataacgcgaacgctacgcgtttattcgtgaaacttttgcattatatcgcagttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|8 : tatgtgagaatgcgttataacgcgataaggaATTTTGTTATATCCCTATATGT------TAT-TCTCTATATAAT----TCAGCACAAGAA-AAAAC-CCAATAATCCCGATGTTCGCCTTGGACTGC-C-GGTCCATTGGAAACTCGATGTTGG-------ACCGCCCGGT-C---AACATCGTG-TTTTCAATGGACCAGT---ATGATGTAAT---TTT-----A-TGAATATCA-A----TTCATGGGTA-TT-TGGAGTAATTCGTAACTA-TCCGTGAATTGGTAttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|9 : C-C-GGTCCACTGAAAACTCCATGTAGA-------ACTGTTCAGC-CT--ATCATTGAG-TTTCCAAT-GACCAAT---CCGACGTCATCGACGC-----ACT---------AGGATTTCGCGGGCC-AT-CGGGCTAACTTGTAA-TA-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAACCCAGATGTTCCTGTAATATGCTATTTATATGCATATATTGAAATGACGAAAATTGGATATCAATGTTTTTGTATCTTCATATACATATAATGGTG
Alignments
lowQualScore : 1111 111 22222222 11 222222222 2222222 22222222222 2222222 1111 1111111 77777777777777777777777777777777 22222222222222 22222 666666666666666666666666666666666666 2222222222222222222 22222222 1 11 22222222 11111 11111 11111111 11 2222 1 11111 111 22222 222222222 33333 11111 22222222222 11111111 999999999999999999999999 1 11 1
lowQualScore : 5 0 0 8 4444 111 44444444 11 666666666 6 6 6666666 00000000000 1 5555555 5 5555 1 6 555 1 2 2 1111111 666 7 3 0 77 8888 00000000000000000000000000000000 8 4 4 8 00000000000000 777 8888 00000 999999999999999999999999999999999999 5555555555555555555 00000000 1 5 22 8 11 66 777 4 4 66 00000000 5 0 5 22222 1 2 88888 5 1 66 66666666 1 0 11 3 5555 0 0 5 4 22222 66 4 111 55555 777 333333333 0 6 0 0 33333 5 11111 33333333333 9 6 77777777 111111111111111111111111 8 9 33 0
lowQualScore : . . . . .... ... ........ .. ......... . . ....... ........... . ....... . .... . . ... . . . ....... ... . . . .. .... ................................ . . . . .............. ... .... ..... .................................... ................... ........ . . .. . .. .. ... . . .. ........ . . . ..... . . ..... . . .. ........ . . .. . .... . . . . ..... .. . ... ..... ... ......... . . . . ..... . ..... ........... . . ........ ........................ . . .. .
lowQualScore : 2 8 8 0 2222 777 22222222 22 777777777 7 4 0000000 22222222222 0 7777777 7 6666 0 7 888 4 9 9 8888888 444 3 6 5 99 5555 44444444444444444444444444444444 9 7 4 9 99999999999999 888 4444 00000 000000000000000000000000000000000000 0000000000000000000 77777777 3 0 44 2 99 11 888 4 4 11 66666666 0 1 0 55555 4 5 22222 0 1 11 11111111 7 8 00 2 2222 8 0 0 9 55555 00 4 000 77777 888 777777777 8 7 2 8 88888 7 99999 33333333333 9 6 77777777 111111111111111111111111 0 2 22 0
consensus : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAA-GCGTTACGCG-TT--A--ATTCGCGA---------AAAGTTACGCGTTAAT----TCGCGAAACTTTCGC-TTATAT-CGCAGAA-CTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
Reference ( family-907 ) : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATANTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--NGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAACGCGTTACGCG-TT--A--ATTCGCGA---------AAAGTTACGCGTTAAT----TCGCGAAACTTTCGC-TTATNT-CGCAGAAACTTCGNCGTTTA-TTCGCGAAA-AGTT-ACGCGTTATTTCGCG
gi|1 : ACACGCTTTATATTGCAATGTTCAGTAATGACATGTCAAACTTCGTCTAGACGTTGTAGATTACAGACATGTTTTACTGG-CTATCGACAATCT----TCTTGTGTTCTATTGTCCTACA--------TAGATTTGTCT--------------TAGGTTTGTGGCAC-ATGCTTGGACTTATATT-------ATATCATATACGTCACGCAAGATAAACACGACGTCATGTTTTGTTATATCCCTATATG------TCAT-TCTCTATATAAT----TCAACACAAGAAAAAGA-CCAATAATCCCGATGTTCGTCTTGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCA---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATAATGTCAT--------------------------------TTCGTGGGTA-TTTGGAATAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--TTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAA--------ACA-AATAATCCTGTAAT-TGG-TTTTGTT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTAAATCC--ACAAG--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGTCTTATATATATCCCTAAA-TATCG-CGTTAATT-----CGCGAAAGTT-ACGCG-TT-GTTTCTCCCCGCGAGAAAACTTTTGC--GGGTTAT-TCGCGAAAACGCGTTACGCACTT--A--ATTCGCGA---------AAAGTT-CGCGTTAAT----TAGCGAAACTTTCGC-TTATTTCCGCAGAAACTTTGCCGTTTA-TTCGCGGAACAGTTAACGCGTTATTTCGCG
gi|10 : ACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCAACAATCT----TGTAGTGTTCTAT---CATAAACTACAGTGTAAGTTTGTCC-CACA---------AAGGTTTGTGGCAC-ATGCTTGGATTTATGTT-------ATATCCTGTAAGTCACGCAAG
gi|11 : GGAATCTGCCTTATA-A-ATCTCTGAA-TATCN-NNNNNNNN-----NNNNNNNNNN-NNNNN-NN-NNNN----NNNNN---NNNNNNNNNN--NNNNNNN-NNNNNNNNNNNNNNNNNNNN-NN--N--NNNNNNNN---------NNNNNNNNNNNNNNNNNNNNTCGCAAAACTTTC-----------------------ACGTTTA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCGt
gi|12 : TTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAAACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCACTTTGCTTGGACTTACGTT-------ATATCC-AT---------AAGATAAACAAGACGT
gi|13 : CGCG-TTTATTT----C---G---AAAGTT-AAC--GT-TTAT-TCGCAAA----CGTTACGCG-TTTTATTATT-GCGA---------AC-GTTTTGCGTTA------TCGCGGAATTTACGC-TTTTATTCG-AGAA-CTTCGTTGTTTATTTCGC
gi|14 : atATATAATAAAAGGAATACAATGAGAAAT-CCAGCAAATTCATTGTT----TC-GACAGCTC-GATCCACTGAAAAATCAACCTTGG-------ACTGCTCA---GTCC-AACAAAGGG-TTTCCAATGGA-CAGTTCAAATGACGTTAT---Cttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|15 : atacaactgaCTCGGACTGC-C-AGTCCATTGAAAACTCGATGatgtgtat
gi|15 : --------T-------A---A---TTCGTGGGTA-TTTAGAGTAACTCGTGACT-ATCCGTGAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGATaagaaagttcagtattaattcgtgaaaattaattcgtgggtatttagagtaactcgtgactatccgtgaattggtatgaatcatcaatagtgaaggaacaattgat
gi|16 : ctcggactgccagtccattgaaaactcgatgaagaaagttcagtattaattcgtgaaaatATGTTTCTGTAATATGC-TTT--TTAAATT-ACTTA--CAATG-------TGTATA-TAC-T-ATATTATCAAAATGTACAAAGTTGGAAATTGAT--GGTTTTGTGTGTCATTGGTATAC--ATATACGCCAGTGAGGTAAATGTATAACAAAACA
gi|17 : GAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGACTT--G-TTATC----GGCTGAGGG---------------TGAAAA-AA------------TTGTGATTAAATGTAAACAT--A----AAA--------ACA-GAT-CTTCTGTAAT-TGTATTT--AT---TT-A---A--CAAT--------TGATT
gi|18 : TGTTATGCCCATAAATA------TTAT-TCTCTATATAAC----TGAATACAAGAAAAAGT-TCAACAATCCCAATG-----CTTGGACTGC-T-AGTCCATTGAAAACTCGATGTTGG-------ACCGGGCG---GT-T-A------TA-TTTTCAACGG
gi|19 : CAAGAAAAAGT-CCAACAATCCCGATGTTCACCCCCCCCCCC-CCGGTCCATTGATTAATCAATATTGG-------ACCGACCG---GT-T-GACATCATG-TTTTAAATGGACCGGT----ATGACGTCAT---CT
gi|2 : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATT-CAAACATGTTT-AATGGGATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-TTGCTTGGACTTA-GTT-------ATATCC------------AAGATAAACAAGACGTCATATTTTGTTATATCCCTATAT-------TTAT-TCTCTATATAAT----TCAACACAAGAAAAA---CCATTAATCCCGATATTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GTCC-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCAT---TTC-ATGAATAT-T-------A---A---TTCGTGGGTATTTCGGAGTAACTCATAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTNNNNN--NNNNNN-----NNNNNNNNNNNNNNATTGATTTGTTG---A-AATTGCAGGTGAAATTGTGATT-----TAA--TTTAA----AAA--------AAA-GATAATCCTGTAAT-TG---TT--TT---TT-A-TTA--TAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--AGCTTT-TGTATCATTTATATCC--ACATA--------ATGTAGTAGTATAACAAAAGATTTAGGCC--TATTGACTTtctgaat
gi|20 : acAA--------ACA-GATATTCCTGTAATATGC-TCC--TT---GT-A-TTA--CA--------------TAGTACAT-GTATCAAA---AT-AAGAAAGTTGGAAATTG-----------------ATGTATATACAGATATA--------CTGGTGATGTATAACAAAAC
gi|21 : A-GATGTTCCTGTAATATGC-T---------------------AT--------TTAT-A-TGCAT-ATATTGAA---ATGACGAAAATTGGATATCA-A--TGTTTT-TGTATC-TTCATATAC--ATATA--------ATG
gi|22 : aaacccATCG-TGTTTATA-----CGCGAAAGTA-TCGCG-TT-GATT-----CGCG---AAAGTTTCGCAAAAGT--T-TCGCG---TTGAGTTACGCG-TT--A--TTTCGC-A---------AAAGTTACGCgtg
gi|23 : caaCA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACATTGTATATTATATCCTATACGTCACACAAGATAAACACGACGTCATATTTTGTTTTATCTC
gi|24 : TGACATGTCAAACT-------GACGTTGTAGATTACAGGCATGTTTTAATGG-ATATCGACAATCTTAACTGTAGTGTTCTAT---CATAAAC-------TAGGT
gi|25 : ATCT----TATAGTGTTCTAT---CATAAAG-------TAGGTTTCTCCTTATAGGCTTGTCCTAGGTTTATGGTGC-ATGCGCGGA
gi|26 : GAATGTGCCTTGTGTAT----CTGAAATAGCGACGTTAATT-----CGTGAAAGTTAACGCGTTT-TATT----CCGCG---Atct
gi|27 : aTATAAT----TAGATACAAGAAAAGGT-CCAGCAATCCCGATGTT-G----GGACTGT-T-GGTCCATTAAAA
gi|28 : CACGATTTGTATTGCAATGTTCAGTGATGACATGTCAAACTATGTCTAGACGTTGTAcc
gi|29 : GTTACGCG-TT--A--TTTCGCGA---------AA-GTTACGCGCAAAT----TTGCGAAAGTTTCGC-GTA
gi|3 : TTTGTTATATCCCTATAT-------TTATCTCTCTATATAAT----TCAACACAAGAAAAAGCGCCATTAATCCCGATATTCGCCTCGGACTGC-C--GTCCATTGAAAACTCGATGTTGG-------ACCGCCCGGTCGT-C-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCAT---TTC-ATTGAATATT-------A---A---TTCGTGGGTATTTCGGA-TAACTCATAACTAATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATTATTGATTT--GTTGA------AATTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--TT--T----AAA--------AAA-GATAATCCTGTAAT-TG--TTT--TT---TT-A-TTAATTAAT--------TGATTA-TACATGGCATTACT---ATGAA-AAAGTTCAAAATTG-TACAGCTTT-TGTATCATTTATA-CC--ACATA--------ATGTAGTAGT-TAACAAAAGA-TTAGGCC--TATTGA-TTTGG-ATCTGCCTTATA-A-ATCTCTGAA-TATCG-CGTTAATTTATTACACGAAAGTT-ACGCG-TT-AATT-----CGC-------------------TTACATCGCGAAA----GTTATGCA-TT--A--ATTCGCG----------AAAGT----------T----TCGCAAAACTTTC-----------------------ACGTTTA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCata
gi|30 : -CCAATAATCCCGATGTTCGCCTAGGACTGC-C-GGTCCATTGAAAACTCGATGTT
gi|31 : aTTTATATCC--ACATA--------ATGTGGAGGTATAACATGACATGTAGGCC--TATTGGCTTTG
gi|32 : ACACGATTTGTATTGCA
gi|32 : ATCG-TGTT--TT-----CGCGAAAGTT-TCGCG-TT-ATTT-----CGCG---AAtttcgcgaaagtttcgcgttatttcgcgaa
gi|33 : tgcaatacaaG-CGTTTATT-----TGCGAAAGTT-TCGAG-TT-TATT-----CGCG---AAAGTTTCGC--G
gi|34 : TCAACAGT-GA--------A-----GAAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-Att
gi|35 : TTCA-TTCGCGAAA--GTT-ACGCGTTATTTCGCG
gi|4 : TACAAGGGTAAATACTAATAATCCCGATGTTTGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGGTCAATGGACCGCCCG---GT-C-AACATGGTG-TTTTCAATGGACCAGT----ATGACGTCAT---TTT-A--------T-------G---AATATTCCTGGGTA-TTCGGAGTAACTCGTAACT-ATTCGTGAATTGGTA------------------------------------------TCGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAACATAAATAAAA-GATATTCCTGTAAT-TGT-TTT--TT---TTTA-TTA--CAATATAATTATTGATTG-TACAT-GCCTTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTGGAGGTATAACAAAACATTTAGGCCTATATTGACT
gi|5 : cTGTTATACCCCTATATA------TCAT-TCTCTATATAATTA--TAGATAC-AGTATATGT-CAAACAATCCCGATGT-------------------TCTATTTAAAACTCAATGCTGG-------ACCACCCA---GT-C--------------------------------TGACGTCAT---CTC-A----------------------------TGAATA-TTC-------TT--TAACT-ATCTGTGAAGTGGTACGACTCGTCTATTGTAGA--------ACCCTTATAAGA---ACTGATTTCAG-TGATAAAAAGACTTCAGATCTTGTTCTTT----TA---ATAA------------TTGTTCTT-----TTG--TT--ATCATAAA--------AAACGACGTTCCTGTAATATGC-TTT--TT---GT-A-TGA--C-AT--------TTATCA-AA---------------ATGAGAAAAGTTGGAAATTG-A--TGTTTT-TGTATCATTTATAAAC--ATATA--------
gi|6 : TTGTTATACCACTATATATGTATATCAT-TCTCTATGTAAT----TAGATAGAAGAAAAAGT-CCAACAATCACAATGTTTGT-----ACTGC-T-GGTCCATTTAAAACTCGATGTTGG-------ACCACTCG---GC-C-CACACCATATTTTTCAATGGACCTGT----ATGACATCAT---CTCAA--------T-------GAATA---TTCGTTGGTA-TTCGGAATAACTCGTAACT-AC------ATAGATATGACTCGTCAATCGTAGAACCCATATA-----TGAACA---ATTGATTT--c
gi|7 : CG-CGTTAATT-----CGCGAATTTG-TAGCG-CT-A-TG----ACACA---AAAGTTACGC--AT-TTAT-TC-CAAAAA---GTTACGCG-TT--T--ATTCGCAATATAACGCGAACGCTACGCGTTTAT----TCGTGAAACTTTTGCATTATAT-CGCAGcagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|8 : tatgtgagaatgcgttataacgcgataaggaATTTTGTTATATCCCTATATG------TTAT-TCTCTATATAAT----TCAGCACAAGAAAAAAC-CCAATAATCCCGATGTTCGCCTTGGACTGC-C-GGTCCATTGGAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGATGTAAT---TTT-A--------TGAATATCA---A---TTCATGGGTA-TTTGGAGTAATTCGTAACT-ATCCGTGAATTGGTAttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|9 : C-C-GGTCCACTGAAAACTCCATGTAGA-------ACTGTTCA---GC-CTATCATTGAG-TTTCCAAT-GACCAAT----CCGACGTCATCGACGC-AC-------T-------A---GGATTTCGCGGGCC-ATCGGGCTAACTTGTAA-T-AT
Alignments
lowQualScore : 1111 111 22222222 11 222222222 2222222 22222222222 2222222 1111 1111111 77777777777777777777777777777777 22222222222222 22222 666666666666666666666666666666666666 2222222222222222222 22222222 1 11 22222222 11111 11111 11111111 11 2222 1 11111 111 22222 22222 33333 11 33333333333 111111111 11 1 1
lowQualScore : 5 0 0 8 4444 111 44444444 11 666666666 6 6 6666666 00000000000 1 5555555 5 5555 1 6 555 1 2 2 1111111 666 7 3 0 77 8888 00000000000000000000000000000000 8 4 4 8 00000000000000 777 8888 00000 999999999999999999999999999999999999 5555555555555555555 00000000 1 5 8 11 66 777 4 4 66 00000000 5 0 5 22222 1 2 99999 5 1 66 66666666 1 0 11 3 5555 0 0 5 5 44444 66 5 222 88888 888 88 77777 0 8 77777 55 99 55555555555 7 7 777 777777777 5 8 777 8 77 0 0
lowQualScore : . . . . .... ... ........ .. ......... . . ....... ........... . ....... . .... . . ... . . . ....... ... . . . .. .... ................................ . . . . .............. ... .... ..... .................................... ................... ........ . . . .. .. ... . . .. ........ . . . ..... . . ..... . . .. ........ . . .. . .... . . . . ..... .. . ... ..... ... .. ..... . . ..... .. .. ........... . . ... ......... . . ... . .. . .
lowQualScore : 2 8 8 0 2222 777 22222222 22 777777777 7 4 0000000 22222222222 0 7777777 7 6666 0 7 888 4 9 9 8888888 444 3 6 5 99 5555 44444444444444444444444444444444 9 7 4 9 99999999999999 888 4444 00000 000000000000000000000000000000000000 0000000000000000000 77777777 3 0 2 99 11 888 4 4 11 66666666 0 1 0 55555 4 5 00000 0 1 11 11111111 7 8 00 2 2222 8 0 7 4 33333 77 0 111 88888 888 55 55555 8 0 44444 88 22 00000000000 2 5 666 777777777 0 0 888 0 55 0 0
consensus : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAA-GCGTTACGCG--TTA--ATTCGCGA---------AAAGTTACGCGTTAATTCGCGAAACTTTCGC-TTATA-T-CGCAG-AACTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
Reference ( family-907 ) : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAA-GCGTTACGCG--TTA--ATTCGCGA---------AAAGTTACGCGTTAATTCGCGAAACTTTCGC-TTATA-T-CGCAG-AACTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
gi|1 : ACACGCTTTATATTGCAATGTTCAGTAATGACATGTCAAACTTCGTCTAGACGTTGTAGATTACAGACATGTTTTACTGG-CTATCGACAATCT----TCTTGTGTTCTATTGTCCTACA--------TAGATTTGTCT--------------TAGGTTTGTGGCAC-ATGCTTGGACTTATATT-------ATATCATATACGTCACGCAAGATAAACACGACGTCATGTTTTGTTATATCCCTATATG------TCAT-TCTCTATATAAT----TCAACACAAGAAAAAGA-CCAATAATCCCGATGTTCGTCTTGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCA---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATAATGTCAT--------------------------------TTCGTGGGTA-TTTGGAATAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--TTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAA--------ACA-AATAATCCTGTAAT-TGG-TTTTGTT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTAAATCC--ACAAG--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGTCTTATATATATCCCTAAA-TATCG-CGTTAATT-----CGCGAAAGTT-ACGCG-TT-GTTTCTCCCCGCGAGAAAACTTTTGC--GGGTTAT-TCGCGAAAACGCGTTACGCAC-TTA--ATTCGCGA---------AAAGTT-CGCGTTAATTAGCGAAACTTTCGC-TTATT-TCCGCAGAAACTTTGCCGTTTA-TTCGCGGAACAGTTAACGCGTTATTTCGCG
gi|10 : ACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCAACAATCT----TGTAGTGTTCTAT---CATAAACTACAGTGTAAGTTTGTCC-CACA---------AAGGTTTGTGGCAC-ATGCTTGGATTTATGTT-------ATATCCTGTAAGTCACGCAAG
gi|11 : GGAATCTGCCTTATA-A-ATCTCTGAA-TATCt
gi|11 : -T-CGCAA-AACTTTCACGTTTA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcaaaactttcacgtttattcgcgaaagttacgcgttatttcgcg
gi|12 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAAACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCACTTTGCTTGGACTTACGTT-------ATATCC-AT---------AAGATAAACAAGACGT
gi|13 : CGCG-TTTATTT----C---G---AAAGTT-AAC--GT-TTAT-TCGCAAA----CGTTACGCGTTTTATTATT-GCG----------AACGTTTTGCGTTA--TCGCGGAATTTACGC-TTTTATT-CG-AG-AACTTCGTTGTTTATTTCGC
gi|14 : atATATAATAAAAGGAATACAATGAGAAAT-CCAGCAAATTCATTGTT----TC-GACAGCTC-GATCCACTGAAAAATCAACCTTGG-------ACTGCTCA---GTCC-AACAAAGGG-TTTCCAATGGA-CAGTTCAAATGACGTTAT---Cttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|15 : atacaactgaCTCGGACTGC-C-AGTCCATTGAAAACTCGATGatgtgtat
gi|15 : --------T-------A---A---TTCGTGGGTA-TTTAGAGTAACTCGTGACT-ATCCGTGAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGATaagaaagttcagtattaattcgtgaaaattaattcgtgggtatttagagtaactcgtgactatccgtgaattggtatgaatcatcaatagtgaaggaacaattgat
gi|16 : ctcggactgccagtccattgaaaactcgatgaagaaagttcagtattaattcgtgaaaatATGTTTCTGTAATATGC-TTT--TTAAATT-ACTTA--CAATG-------TGTATA-TAC-T-ATATTATCAAAATGTACAAAGTTGGAAATTGAT--GGTTTTGTGTGTCATTGGTATAC--ATATACGCCAGTGAGGTAAATGTATAACAAAACA
gi|17 : GAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGACTT--G-TTATC----GGCTGAGGG---------------TGAAAA-AA------------TTGTGATTAAATGTAAACAT--A----AAA--------ACA-GATCTT-CTGTAAT-TGTATTT--AT---TT-A---A--CAAT--------TGATT
gi|18 : TGTTATGCCCATAAATA------TTAT-TCTCTATATAAC----TGAATACAAGAAAAAGT-TCAACAATCCCAATG-----CTTGGACTGC-T-AGTCCATTGAAAACTCGATGTTGG-------ACCGGGCG---GT-T-A------TA-TTTTCAACGG
gi|19 : CAAGAAAAAGT-CCAACAATCCCGATGTTCACCCCCCCCCCC-CCGGTCCATTGATTAATCAATATTGG-------ACCGACCG---GT-T-GACATCATG-TTTTAAATGGACCGGT----ATGACGTCAT---CT
gi|2 : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATT-CAAACATGTTT-AATGGGATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-TTGCTTGGACTTA-GTT-------ATATCC------------AAGATAAACAAGACGTCATATTTTGTTATATCCCTATAT-------TTAT-TCTCTATATAAT----TCAACACAAGAAAAA---CCATTAATCCCGATATTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GTCC-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCAT---TTC-ATGAATAT-T-------A---A---TTCGTGGGTATTTCGGAGTAACTCATAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTNNNNN--NNNNNN-----NNNNNNNNNNNNNNATTGATTTGTTG---A-AATTGCAGGTGAAATTGTGATT-----TAA--TTTAA----AAA--------AAA-GATAATCCTGTAAT-TG---TT--TT---TT-A-TTA--TAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--AGCTTT-TGTATCATTTATATCC--ACATA--------ATGTAGTAGTATAACAAAAGATTTAGGCC--TATTGACTTtctgaat
gi|20 : acAA--------ACA-GATATTCCTGTAATATGC-TCC--TT---GT-A-TTA--CA--------------TAGTACAT-GTATCAAA---AT-AAGAAAGTTGGAAATTG-----------------ATGTATATACAGATATA--------CTGGTGATGTATAACAAAAC
gi|21 : A-GATGTTCCTGTAATATGC-T---------------------AT--------TTAT-A-TGCAT-ATATTGAA---ATGACGAAAATTGGATATCA-A--TGTTTT-TGTATC-TTCATATAC--ATATA--------ATG
gi|22 : aaacccATCG-TGTTTATA-----CGCGAAAGTA-TCGCG-TT-GATT-----CGCG---AAAGTTTCGCAAAAGT--T-TCGCGTTGA---GTTACGCG--TTA--TTTCGC-A---------AAAGTTACGCgtg
gi|23 : caaCA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACATTGTATATTATATCCTATACGTCACACAAGATAAACACGACGTCATATTTTGTTTTATCTC
gi|24 : TGACATGTCAAACT-------GACGTTGTAGATTACAGGCATGTTTTAATGG-ATATCGACAATCTTAACTGTAGTGTTCTAT---CATAAAC-------TAGGT
gi|25 : ATCT----TATAGTGTTCTAT---CATAAAG-------TAGGTTTCTCCTTATAGGCTTGTCCTAGGTTTATGGTGC-ATGCGCGGA
gi|26 : GAATGTGCCTTGTGTAT----CTGAAATAGCGACGTTAATT-----CGTGAAAGTTAACGCGTTT-TATT----CCGCG---Atct
gi|27 : aTATAAT----TAGATACAAGAAAAGGT-CCAGCAATCCCGATGTT-G----GGACTGT-T-GGTCCATTAAAA
gi|28 : CACGATTTGTATTGCAATGTTCAGTGATGACATGTCAAACTATGTCTAGACGTTGTAcc
gi|29 : GTTACGCG--TTA--TTTCGCGA---------AA-GTTACGCGCAAATTTGCGAAAGTTTCGC-GTA
gi|3 : TTTGTTATATCCCTATAT-------TTATCTCTCTATATAAT----TCAACACAAGAAAAAGCGCCATTAATCCCGATATTCGCCTCGGACTGC-C--GTCCATTGAAAACTCGATGTTGG-------ACCGCCCGGTCGT-C-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCAT---TTC-ATTGAATATT-------A---A---TTCGTGGGTATTTCGGA-TAACTCATAACTAATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATTATTGATTT--GTTGA------AATTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--TT--T----AAA--------AAA-GATAATCCTGTAAT-TG--TTT--TT---TT-A-TTAATTAAT--------TGATTA-TACATGGCATTACT---ATGAA-AAAGTTCAAAATTG-TACAGCTTT-TGTATCATTTATA-CC--ACATA--------ATGTAGTAGT-TAACAAAAGA-TTAGGCC--TATTGA-TTTGG-ATCTGCCTTATA-A-ATCTCTGAA-TATCG-CGTTAATTTATTACACGAAAGTT-ACGCG-TT-AATT-----CGC-------------------TTACATCGCGAAA----GTTATGCA--TTA--ATTCGCG----------AAAGT----------TTCGCAAAACTTTC------------------------ACGTTTA-TTCGC-GAA-AGTT-ACGCGTTATTTCGCata
gi|30 : -CCAATAATCCCGATGTTCGCCTAGGACTGC-C-GGTCCATTGAAAACTCGATGTT
gi|31 : aTTTATATCC--ACATA--------ATGTGGAGGTATAACATGACATGTAGGCC--TATTGGCTTTG
gi|32 : ACACGATTTGTATTGCA
gi|32 : ATCG-TGTT--TT-----CGCGAAAGTT-TCGCG-TT-ATTT-----CGCG---AAtttcgcgaaagtttcgcgttatttcgcgaa
gi|33 : tgcaatacaaG-CGTTTATT-----TGCGAAAGTT-TCGAG-TT-TATT-----CGCG---AAAGTTTCGC--G
gi|34 : TCAACAGT-GA--------A-----GAAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-Att
gi|35 : TTCA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCG
gi|4 : TACAAGGGTAAATACTAATAATCCCGATGTTTGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGGTCAATGGACCGCCCG---GT-C-AACATGGTG-TTTTCAATGGACCAGT----ATGACGTCAT---TTT-A--------T-------G---AATATTCCTGGGTA-TTCGGAGTAACTCGTAACT-ATTCGTGAATTGGTA------------------------------------------TCGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAACATAAATAAAA-GATATTCCTGTAAT-TGT-TTT--TT---TTTA-TTA--CAATATAATTATTGATTG-TACAT-GCCTTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTGGAGGTATAACAAAACATTTAGGCCTATATTGACT
gi|5 : cTGTTATACCCCTATATA------TCAT-TCTCTATATAATTA--TAGATAC-AGTATATGT-CAAACAATCCCGATGT-------------------TCTATTTAAAACTCAATGCTGG-------ACCACCCA---GT-C--------------------------------TGACGTCAT---CTC-A----------------------------TGAATA-TTC-------TT--TAACT-ATCTGTGAAGTGGTACGACTCGTCTATTGTAGA--------ACCCTTATAAGA---ACTGATTTCAG-TGATAAAAAGACTTCAGATCTTGTTCTTT----TA---ATAA------------TTGTTCTT-----TTG--TT--ATCATAAA--------AAACGACGTTCCTGTAATATGC-TTT--TT---GT-A-TGA--C-AT--------TTATCA-AA---------------ATGAGAAAAGTTGGAAATTG-A--TGTTTT-TGTATCATTTATAAAC--ATATA--------
gi|6 : TTGTTATACCACTATATATGTATATCAT-TCTCTATGTAAT----TAGATAGAAGAAAAAGT-CCAACAATCACAATGTTTGT-----ACTGC-T-GGTCCATTTAAAACTCGATGTTGG-------ACCACTCG---GC-C-CACACCATATTTTTCAATGGACCTGT----ATGACATCAT---CTCAA--------T-------GAATA---TTCGTTGGTA-TTCGGAATAACTCGTAACT-AC------ATAGATATGACTCGTCAATCGTAGAACCCATATA-----TGAACA---ATTGATTT--c
gi|7 : CG-CGTTAATT-----CGCGAATTTG-TAGCG-CT-A-TG----ACACA---AAAGTTACGC--AT-TTAT-TC-CAAAAA-G--TTACGCG--TTT--ATTCGCAATATAACGCGAACGCTACGCGTTTATTCGTGAAACTTTTGCATTATA-T-CGCAG-cagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|8 : tatgtgagaatgcgttataacgcgataaggaATTTTGTTATATCCCTATATG------TTAT-TCTCTATATAAT----TCAGCACAAGAAAAAAC-CCAATAATCCCGATGTTCGCCTTGGACTGC-C-GGTCCATTGGAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGATGTAAT---TTT-A--------TGAATATCA---A---TTCATGGGTA-TTTGGAGTAATTCGTAACT-ATCCGTGAATTGGTAttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|9 : C-C-GGTCCACTGAAAACTCCATGTAGA-------ACTGTTCA---GC-CTATCATTGAG-TTTCCAAT-GACCAAT----CCGACGTCATCGACGC-AC-------T-------A---GGATTTCGCGGGCC-ATCGGGCTAACTTGTAA-T-AT
Alignments
lowQualScore : 1111 111 22222222 11 222222222 2222222 22222222222 2222222 1111 1111111 77777777777777777777777777777777 22222222222222 22222 666666666666666666666666666666666666 2222222222222222222 22222222 1 11 22222222 11111 11111 11111111 11 2222 1 11111 111 22222 22222 33333 11 33333333333 111111111 11 1 1
lowQualScore : 5 0 0 8 4444 111 44444444 11 666666666 6 6 6666666 00000000000 1 5555555 5 5555 1 6 555 1 2 2 1111111 666 7 3 0 77 8888 00000000000000000000000000000000 8 4 4 8 00000000000000 777 8888 00000 999999999999999999999999999999999999 5555555555555555555 00000000 1 5 8 11 66 777 4 4 66 00000000 5 0 5 22222 1 2 99999 5 1 66 66666666 1 0 11 3 5555 0 0 5 5 44444 66 5 222 88888 888 88 77777 0 8 77777 55 99 55555555555 7 7 777 777777777 5 8 777 8 77 0 0
lowQualScore : . . . . .... ... ........ .. ......... . . ....... ........... . ....... . .... . . ... . . . ....... ... . . . .. .... ................................ . . . . .............. ... .... ..... .................................... ................... ........ . . . .. .. ... . . .. ........ . . . ..... . . ..... . . .. ........ . . .. . .... . . . . ..... .. . ... ..... ... .. ..... . . ..... .. .. ........... . . ... ......... . . ... . .. . .
lowQualScore : 2 8 8 0 2222 777 22222222 22 777777777 7 4 0000000 22222222222 0 7777777 7 6666 0 7 888 4 9 9 8888888 444 3 6 5 99 5555 44444444444444444444444444444444 9 7 4 9 99999999999999 888 4444 00000 000000000000000000000000000000000000 0000000000000000000 77777777 3 0 2 99 11 888 4 4 11 66666666 0 1 0 55555 4 5 00000 0 1 11 11111111 7 8 00 2 2222 8 0 7 4 33333 77 0 111 88888 888 55 55555 8 0 44444 88 22 00000000000 2 5 666 777777777 0 0 888 0 55 0 0
consensus : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAA-GCGTTACGCG--TTA--ATTCGCGA---------AAAGTTACGCGTTAATTCGCGAAACTTTCGC-TTATA-T-CGCAG-AACTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
Reference ( family-907 ) : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAA-GCGTTACGCG--TTA--ATTCGCGA---------AAAGTTACGCGTTAATTCGCGAAACTTTCGC-TTATA-T-CGCAG-AACTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
gi|1 : ACACGCTTTATATTGCAATGTTCAGTAATGACATGTCAAACTTCGTCTAGACGTTGTAGATTACAGACATGTTTTACTGG-CTATCGACAATCT----TCTTGTGTTCTATTGTCCTACA--------TAGATTTGTCT--------------TAGGTTTGTGGCAC-ATGCTTGGACTTATATT-------ATATCATATACGTCACGCAAGATAAACACGACGTCATGTTTTGTTATATCCCTATATG------TCAT-TCTCTATATAAT----TCAACACAAGAAAAAGA-CCAATAATCCCGATGTTCGTCTTGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCA---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATAATGTCAT--------------------------------TTCGTGGGTA-TTTGGAATAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--TTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAA--------ACA-AATAATCCTGTAAT-TGG-TTTTGTT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTAAATCC--ACAAG--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGTCTTATATATATCCCTAAA-TATCG-CGTTAATT-----CGCGAAAGTT-ACGCG-TT-GTTTCTCCCCGCGAGAAAACTTTTGC--GGGTTAT-TCGCGAAAACGCGTTACGCAC-TTA--ATTCGCGA---------AAAGTT-CGCGTTAATTAGCGAAACTTTCGC-TTATT-TCCGCAGAAACTTTGCCGTTTA-TTCGCGGAACAGTTAACGCGTTATTTCGCG
gi|10 : ACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCAACAATCT----TGTAGTGTTCTAT---CATAAACTACAGTGTAAGTTTGTCC-CACA---------AAGGTTTGTGGCAC-ATGCTTGGATTTATGTT-------ATATCCTGTAAGTCACGCAAG
gi|11 : GGAATCTGCCTTATA-A-ATCTCTGAA-TATCt
gi|11 : -T-CGCAA-AACTTTCACGTTTA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcaaaactttcacgtttattcgcgaaagttacgcgttatttcgcg
gi|12 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAAACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCACTTTGCTTGGACTTACGTT-------ATATCC-AT---------AAGATAAACAAGACGT
gi|13 : CGCG-TTTATTT----C---G---AAAGTT-AAC--GT-TTAT-TCGCAAA----CGTTACGCGTTTTATTATT-GCG----------AACGTTTTGCGTTA--TCGCGGAATTTACGC-TTTTATT-CG-AG-AACTTCGTTGTTTATTTCGC
gi|14 : atATATAATAAAAGGAATACAATGAGAAAT-CCAGCAAATTCATTGTT----TC-GACAGCTC-GATCCACTGAAAAATCAACCTTGG-------ACTGCTCA---GTCC-AACAAAGGG-TTTCCAATGGA-CAGTTCAAATGACGTTAT---Cttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|15 : atacaactgaCTCGGACTGC-C-AGTCCATTGAAAACTCGATGatgtgtat
gi|15 : --------T-------A---A---TTCGTGGGTA-TTTAGAGTAACTCGTGACT-ATCCGTGAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGATaagaaagttcagtattaattcgtgaaaattaattcgtgggtatttagagtaactcgtgactatccgtgaattggtatgaatcatcaatagtgaaggaacaattgat
gi|16 : ctcggactgccagtccattgaaaactcgatgaagaaagttcagtattaattcgtgaaaatATGTTTCTGTAATATGC-TTT--TTAAATT-ACTTA--CAATG-------TGTATA-TAC-T-ATATTATCAAAATGTACAAAGTTGGAAATTGAT--GGTTTTGTGTGTCATTGGTATAC--ATATACGCCAGTGAGGTAAATGTATAACAAAACA
gi|17 : GAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGACTT--G-TTATC----GGCTGAGGG---------------TGAAAA-AA------------TTGTGATTAAATGTAAACAT--A----AAA--------ACA-GATCTT-CTGTAAT-TGTATTT--AT---TT-A---A--CAAT--------TGATT
gi|18 : TGTTATGCCCATAAATA------TTAT-TCTCTATATAAC----TGAATACAAGAAAAAGT-TCAACAATCCCAATG-----CTTGGACTGC-T-AGTCCATTGAAAACTCGATGTTGG-------ACCGGGCG---GT-T-A------TA-TTTTCAACGG
gi|19 : CAAGAAAAAGT-CCAACAATCCCGATGTTCACCCCCCCCCCC-CCGGTCCATTGATTAATCAATATTGG-------ACCGACCG---GT-T-GACATCATG-TTTTAAATGGACCGGT----ATGACGTCAT---CT
gi|2 : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATT-CAAACATGTTT-AATGGGATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-TTGCTTGGACTTA-GTT-------ATATCC------------AAGATAAACAAGACGTCATATTTTGTTATATCCCTATAT-------TTAT-TCTCTATATAAT----TCAACACAAGAAAAA---CCATTAATCCCGATATTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GTCC-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCAT---TTC-ATGAATAT-T-------A---A---TTCGTGGGTATTTCGGAGTAACTCATAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTNNNNN--NNNNNN-----NNNNNNNNNNNNNNATTGATTTGTTG---A-AATTGCAGGTGAAATTGTGATT-----TAA--TTTAA----AAA--------AAA-GATAATCCTGTAAT-TG---TT--TT---TT-A-TTA--TAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--AGCTTT-TGTATCATTTATATCC--ACATA--------ATGTAGTAGTATAACAAAAGATTTAGGCC--TATTGACTTtctgaat
gi|20 : acAA--------ACA-GATATTCCTGTAATATGC-TCC--TT---GT-A-TTA--CA--------------TAGTACAT-GTATCAAA---AT-AAGAAAGTTGGAAATTG-----------------ATGTATATACAGATATA--------CTGGTGATGTATAACAAAAC
gi|21 : A-GATGTTCCTGTAATATGC-T---------------------AT--------TTAT-A-TGCAT-ATATTGAA---ATGACGAAAATTGGATATCA-A--TGTTTT-TGTATC-TTCATATAC--ATATA--------ATG
gi|22 : aaacccATCG-TGTTTATA-----CGCGAAAGTA-TCGCG-TT-GATT-----CGCG---AAAGTTTCGCAAAAGT--T-TCGCGTTGA---GTTACGCG--TTA--TTTCGC-A---------AAAGTTACGCgtg
gi|23 : caaCA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACATTGTATATTATATCCTATACGTCACACAAGATAAACACGACGTCATATTTTGTTTTATCTC
gi|24 : TGACATGTCAAACT-------GACGTTGTAGATTACAGGCATGTTTTAATGG-ATATCGACAATCTTAACTGTAGTGTTCTAT---CATAAAC-------TAGGT
gi|25 : ATCT----TATAGTGTTCTAT---CATAAAG-------TAGGTTTCTCCTTATAGGCTTGTCCTAGGTTTATGGTGC-ATGCGCGGA
gi|26 : GAATGTGCCTTGTGTAT----CTGAAATAGCGACGTTAATT-----CGTGAAAGTTAACGCGTTT-TATT----CCGCG---Atct
gi|27 : aTATAAT----TAGATACAAGAAAAGGT-CCAGCAATCCCGATGTT-G----GGACTGT-T-GGTCCATTAAAA
gi|28 : CACGATTTGTATTGCAATGTTCAGTGATGACATGTCAAACTATGTCTAGACGTTGTAcc
gi|29 : GTTACGCG--TTA--TTTCGCGA---------AA-GTTACGCGCAAATTTGCGAAAGTTTCGC-GTA
gi|3 : TTTGTTATATCCCTATAT-------TTATCTCTCTATATAAT----TCAACACAAGAAAAAGCGCCATTAATCCCGATATTCGCCTCGGACTGC-C--GTCCATTGAAAACTCGATGTTGG-------ACCGCCCGGTCGT-C-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCAT---TTC-ATTGAATATT-------A---A---TTCGTGGGTATTTCGGA-TAACTCATAACTAATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATTATTGATTT--GTTGA------AATTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--TT--T----AAA--------AAA-GATAATCCTGTAAT-TG--TTT--TT---TT-A-TTAATTAAT--------TGATTA-TACATGGCATTACT---ATGAA-AAAGTTCAAAATTG-TACAGCTTT-TGTATCATTTATA-CC--ACATA--------ATGTAGTAGT-TAACAAAAGA-TTAGGCC--TATTGA-TTTGG-ATCTGCCTTATA-A-ATCTCTGAA-TATCG-CGTTAATTTATTACACGAAAGTT-ACGCG-TT-AATT-----CGC-------------------TTACATCGCGAAA----GTTATGCA--TTA--ATTCGCG----------AAAGT----------TTCGCAAAACTTTC------------------------ACGTTTA-TTCGC-GAA-AGTT-ACGCGTTATTTCGCata
gi|30 : -CCAATAATCCCGATGTTCGCCTAGGACTGC-C-GGTCCATTGAAAACTCGATGTT
gi|31 : aTTTATATCC--ACATA--------ATGTGGAGGTATAACATGACATGTAGGCC--TATTGGCTTTG
gi|32 : ACACGATTTGTATTGCA
gi|32 : ATCG-TGTT--TT-----CGCGAAAGTT-TCGCG-TT-ATTT-----CGCG---AAtttcgcgaaagtttcgcgttatttcgcgaa
gi|33 : tgcaatacaaG-CGTTTATT-----TGCGAAAGTT-TCGAG-TT-TATT-----CGCG---AAAGTTTCGC--G
gi|34 : TCAACAGT-GA--------A-----GAAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-Att
gi|35 : TTCA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCG
gi|4 : TACAAGGGTAAATACTAATAATCCCGATGTTTGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGGTCAATGGACCGCCCG---GT-C-AACATGGTG-TTTTCAATGGACCAGT----ATGACGTCAT---TTT-A--------T-------G---AATATTCCTGGGTA-TTCGGAGTAACTCGTAACT-ATTCGTGAATTGGTA------------------------------------------TCGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAACATAAATAAAA-GATATTCCTGTAAT-TGT-TTT--TT---TTTA-TTA--CAATATAATTATTGATTG-TACAT-GCCTTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTGGAGGTATAACAAAACATTTAGGCCTATATTGACT
gi|5 : cTGTTATACCCCTATATA------TCAT-TCTCTATATAATTA--TAGATAC-AGTATATGT-CAAACAATCCCGATGT-------------------TCTATTTAAAACTCAATGCTGG-------ACCACCCA---GT-C--------------------------------TGACGTCAT---CTC-A----------------------------TGAATA-TTC-------TT--TAACT-ATCTGTGAAGTGGTACGACTCGTCTATTGTAGA--------ACCCTTATAAGA---ACTGATTTCAG-TGATAAAAAGACTTCAGATCTTGTTCTTT----TA---ATAA------------TTGTTCTT-----TTG--TT--ATCATAAA--------AAACGACGTTCCTGTAATATGC-TTT--TT---GT-A-TGA--C-AT--------TTATCA-AA---------------ATGAGAAAAGTTGGAAATTG-A--TGTTTT-TGTATCATTTATAAAC--ATATA--------
gi|6 : TTGTTATACCACTATATATGTATATCAT-TCTCTATGTAAT----TAGATAGAAGAAAAAGT-CCAACAATCACAATGTTTGT-----ACTGC-T-GGTCCATTTAAAACTCGATGTTGG-------ACCACTCG---GC-C-CACACCATATTTTTCAATGGACCTGT----ATGACATCAT---CTCAA--------T-------GAATA---TTCGTTGGTA-TTCGGAATAACTCGTAACT-AC------ATAGATATGACTCGTCAATCGTAGAACCCATATA-----TGAACA---ATTGATTT--c
gi|7 : CG-CGTTAATT-----CGCGAATTTG-TAGCG-CT-A-TG----ACACA---AAAGTTACGC--AT-TTAT-TC-CAAAAA-G--TTACGCG--TTT--ATTCGCAATATAACGCGAACGCTACGCGTTTATTCGTGAAACTTTTGCATTATA-T-CGCAG-cagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|8 : tatgtgagaatgcgttataacgcgataaggaATTTTGTTATATCCCTATATG------TTAT-TCTCTATATAAT----TCAGCACAAGAAAAAAC-CCAATAATCCCGATGTTCGCCTTGGACTGC-C-GGTCCATTGGAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGATGTAAT---TTT-A--------TGAATATCA---A---TTCATGGGTA-TTTGGAGTAATTCGTAACT-ATCCGTGAATTGGTAttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|9 : C-C-GGTCCACTGAAAACTCCATGTAGA-------ACTGTTCA---GC-CTATCATTGAG-TTTCCAAT-GACCAAT----CCGACGTCATCGACGC-AC-------T-------A---GGATTTCGCGGGCC-ATCGGGCTAACTTGTAA-T-AT
blockSeqs : C G TAAC . CTACAGTG TT GGCTTGTCC T T GTATATT TGTAAGTCACG A ATGTATA C AAAA G G CAC C T C TCAATGG GTC C T AT TCAA TTCATTGAATATTAA T G A A ACCCATATA ATT CAG AAAAA NNNNNATTGATTTGTTGAAATTGCAGGTGAAA AAATGTAAACATA CATAAATA C C A TA . AAA T C AT ATAATTAT G G TCAAA C G TACA G A AG CGCCAGTG T TA A TAT A A T TATTA AA T TAT C . TC AAAAG A AAG TT TT AATATAACGCG C T AAA TTTTATT C . TCA T G . .
blockSeqs : C . . . C C . . C . TATACGTCACA A A . TA G A CGC C . . . . C . G . TTCATGAATATTAA T G . A ACCCTT . NN C TCTTGTTCTTTTAATAA TTGTTATCAT . A . A C . . . . . G . . CT G C ATG . C . . A . A AA . . A . T . GA C . TC GT . GA . . GA A A TTA ATTATAT C . CGT . G . .
blockSeqs : C . . . C C . . C . AT C A . . C . CGC T . . . . . . A . TTTATGAATATCAA . G . . A . GT . TGAAAAAA TAATTTAA . C . A C . . . . . . . . AA G G TA . A . . T . . AA . . A . A . TA A . AC AT . C . . G A A TA . . . A . G . .
blockSeqs : A . . . C C . . . . . G . . A . CGC C . . . . . . G . CGACGCACTAGGAT . A . . A . GT . TGAAA TAATTT . A . A C . . . . . . . . AA G G AT . A . . A . . T . T . AA . . A . . A . . A C A . . . .
blockSeqs : . . . G . . . . . C . TGC C . . . . . . G . CTCAATGAATA . G . . A . GT . TGAAA AAAGTA . A . . T . . . . . . . . CT G C TT . C . . G . A . T . AT . . . . . G . .
blockSeqs : . . . A . TGT C . . . . . . G . TTTATGAATA . C . . A . G . . A . . C . . . . . . . . CT A C AT . C . . G . . . T . TA . .
blockSeqs : . A . CGC A . . . . . . G . CTCA . . . . A . . . . . . . . . . . . . . G . . C . . . A . .
blockSeqs : . C . G C . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . T . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : *** C******* C* CTCATGAATATTAA****************** ** ***** *** G**** A**** ** G**********
originalCons : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCAT---CTC-A--------T-------A---A---TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT----CCGCG---AAAGTTTCGC--GNGTTAT-TCGCGAAAA-GCGTTACGCG--TTA--ATTCGCGA---------AAAGTTACGCGTTAATTCGCGAAACTTTCGC-TTATA-T-CGCAG-AACTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
finalCons : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCCC-ACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCATCTCATGAATATTAA------------------TTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTT--TT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG-TT-ANTT-----CGCG---AAAGTTTCGCG----TTAT-TCGCGAAA----GTTACGCG--TTA--ATTCGCG----------AAAGTTACGCGTTAATTCGCGAAACTTTCGC-TTATA-T-CGCAG-AACTTCGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
Alignments
lowQualScore : 1111 111 22222222 11 222222222 2222222 22222222222 2222222 1111 1111111 22222222222222 22222 666666666666666666666666666666666666 2222222222222222222 22222222 1 11 22222222 11111 11111 11111111 11 2222 1 11111 11111 1111 22222222 1111 111111 2222222222 11 1111 22222222 1111 11
lowQualScore : 5 0 0 8 4444 111 44444444 11 666666666 6 6 6666666 00000000000 1 5555555 5 5555 1 6 555 1 2 2 1111111 666 7 3 0 77 7777 0 777777 3 999 8 4 4 8 00000000000000 777 8888 00000 999999999999999999999999999999999999 5555555555555555555 00000000 1 5 8 11 66 777 4 4 66 00000000 5 0 5 22222 1 2 99999 5 1 66 66666666 1 0 11 3 5555 0 0 5 5 44444 66 66 5 1 22222 0000 88 33333333 8 8 4444 5 222222 5555555555 5 5 00 3 1 4444 00000000 2 6 8888 6 66 8 8
lowQualScore : . . . . .... ... ........ .. ......... . . ....... ........... . ....... . .... . . ... . . . ....... ... . . . .. .... . ...... . ... . . . . .............. ... .... ..... .................................... ................... ........ . . . .. .. ... . . .. ........ . . . ..... . . ..... . . .. ........ . . .. . .... . . . . ..... .. .. . . ..... .... .. ........ . . .... . ...... .......... . . .. . . .... ........ . . .... . .. . .
lowQualScore : 2 8 8 0 2222 777 22222222 22 777777777 7 4 0000000 22222222222 0 7777777 7 6666 0 7 888 4 9 9 8888888 444 3 6 5 99 7777 4 777777 6 888 9 7 4 9 99999999999999 888 4444 00000 000000000000000000000000000000000000 0000000000000000000 77777777 3 0 2 99 11 888 4 4 11 66666666 0 1 0 55555 4 5 00000 0 1 11 11111111 7 8 00 2 2222 8 0 7 4 33333 77 99 0 0 55555 1111 55 77777777 0 0 2222 7 666666 0000000000 7 7 11 2 0 2222 66666666 5 7 2222 7 44 0 0
consensus : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCATCTC-A-TG-AATATTAATTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTTT--T---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG--TT-ATTT-----CGCG---AAAGTTTCGC----GTT-AT-TCGCG-AAA----GTTACGCG-TT--A--NTTCGC----------G-A-AAGTTACGCGTTAATTCGCGAAACTTT----CGC-TTATAT-CGCAG-AACTT-CGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
Reference ( family-907 ) : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACGTT-------ATATCCTATACGTCACGCAAGATAAACANGACGTCATATTTTGTTATATCCCTATATA------TCAT-TCTCTATATAAT----TNAATACAAGAAAAAGT-CCAACAATCCCGATGTTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGACGTCATCTC-A-TG-AATATTAATTCGTGGGTA-TTCGGAGTAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--NT--A----AAA--------AAA-GATATTCCTGTAATATGC-TTTT--T---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCGAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGCCTTATATATATCTCTGAA-TATCG-CGTTAATT-----CGCGAAAGTT-NCGCG--TT-ANTT-----CGCG---AAAGTTTCGC----GTT-AT-TCGCG-AAA----GTTACGCG-TT--A--ATTCGC----------G-A-AAGTTACGCGTTAATTCGCGAAACTTT----CGC-TTATAT-CGCAG-AACTT-CGNCGTTTA-TTCGCGGAA-AGTT-ACGCGTTATTTCGCG
gi|1 : ACACGCTTTATATTGCAATGTTCAGTAATGACATGTCAAACTTCGTCTAGACGTTGTAGATTACAGACATGTTTTACTGG-CTATCGACAATCT----TCTTGTGTTCTATTGTCCTACA--------TAGATTTGTCT--------------TAGGTTTGTGGCAC-ATGCTTGGACTTATATT-------ATATCATATACGTCACGCAAGATAAACACGACGTCATGTTTTGTTATATCCCTATATG------TCAT-TCTCTATATAAT----TCAACACAAGAAAAAGA-CCAATAATCCCGATGTTCGTCTTGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCA---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATAATGTCAT-----------------TTCGTGGGTA-TTTGGAATAACTCGTAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTGATTT--TTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAA--------ACA-AATAATCCTGTAAT-TGG-TTTTGTT---TT-A-TTA--CAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTAAATCC--ACAAG--------ATGTAGAGGTATAACAAAACATTTAGGCC--TATTGACTTTGGAATCTGTCTTATATATATCCCTAAA-TATCG-CGTTAATT-----CGCGAAAGTT-ACGCG--TT-GTTTCTCCCCGCGAGAAAACTTTTGCGG--GTT-AT-TCGCG-AAAACGCGTTACGCACTT--A--ATTCGC----------GAA-AAGTT-CGCGTTAATTAGCGAAACTTT----CGC-TTATTTCCGCAGAAACTT-TGCCGTTTA-TTCGCGGAACAGTTAACGCGTTATTTCGCG
gi|10 : ACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAGACATGTTTTAATGG-ATATCAACAATCT----TGTAGTGTTCTAT---CATAAACTACAGTGTAAGTTTGTCC-CACA---------AAGGTTTGTGGCAC-ATGCTTGGATTTATGTT-------ATATCCTGTAAGTCACGCAAG
gi|11 : GGAATCTGCCTTATA-A-ATCTCTGAA-TATCt
gi|11 : T-CGCAA-AACTT-TCACGTTTA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgcaaaactttcacgtttattcgcgaaagttacgcgttatttcgcg
gi|12 : ggaatctgccttataaatctctgaatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATTACAAACATGTTTTAATGG-ATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCACTTTGCTTGGACTTACGTT-------ATATCC-AT---------AAGATAAACAAGACGT
gi|13 : CGCG--TTTATTT-----CG-----AAAGTT-AAC----GTTTAT-TCGCA-AAC----GTTACGCG-TTTTATTATT-GC----------G-A-ACGTTTTGCGTTA--TCGCGGAATTTA----CGC-TTTTATTCG-AG-AACTT-CGTTGTTTATTTCGC
gi|14 : atATATAATAAAAGGAATACAATGAGAAAT-CCAGCAAATTCATTGTT----TC-GACAGCTC-GATCCACTGAAAAATCAACCTTGG-------ACTGCTCA---GTCC-AACAAAGGG-TTTCCAATGGA-CAGTTCAAATGACGTTA--TC-A-TG-TGTATttgtattttttcagatacgaaaatgatcaatgggctttaattgacttt
gi|15 : atacaactgaCTCGGACTGC-C-AGTCCATTGAAAACTCGATG
gi|15 : CAGT----ATTA----AT-TC-G-TG-AAAATTAATTCGTGGGTA-TTTAGAGTAACTCGTGACT-ATCCGTGAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGATaagaaagttcagtattaattcgtgaaaattaattcgtgggtatttagagtaactcgtgactatccgtgaattggtatgaatcatcaatagtgaaggaacaattgat
gi|16 : ctcggactgccagtccattgaaaactcgatgaagaaagttATGTTTCTGTAATATGC-TTTT--TAAATT-ACTTA--CAATG-------TGTATA-TAC-T-ATATTATCAAAATGTACAAAGTTGGAAATTGAT--GGTTTTGTGTGTCATTGGTATAC--ATATACGCCAGTGAGGTAAATGTATAACAAAACA
gi|17 : GAATTGGTATGAATCATCAATAGT-GA--------A-----GGAACA---ATTGACTT--G-TTATC----GGCTGAGGG---------------TGAAAA-AA------------TTGTGATTAAATGTAAACAT--A----AAA--------ACA-GATCTT-CTGTAAT-TGTATTTA--T---TT-A---A--CAAT--------TGATT
gi|18 : TGTTATGCCCATAAATA------TTAT-TCTCTATATAAC----TGAATACAAGAAAAAGT-TCAACAATCCCAATG-----CTTGGACTGC-T-AGTCCATTGAAAACTCGATGTTGG-------ACCGGGCG---GT-T-A------TA-TTTTCAACGG
gi|19 : CAAGAAAAAGT-CCAACAATCCCGATGTTCACCCCCCCCCCC-CCGGTCCATTGATTAATCAATATTGG-------ACCGACCG---GT-T-GACATCATG-TTTTAAATGGACCGGT----ATGACGTCATCTT-C-TG-AAT
gi|2 : ACACGATTTGTATTGCAATGTTCAGTAATGACATGTCAAACTCCGTCTAGACGTTGTAGATT-CAAACATGTTT-AATGGGATATCGACAATCT----TGTAGTGTTCTAT---CATAAAC-------TAGGTTTGTCC-CACA---------TAGGTTTGTGGCAC-TTGCTTGGACTTA-GTT-------ATATCC------------AAGATAAACAAGACGTCATATTTTGTTATATCCCTATAT-------TTAT-TCTCTATATAAT----TCAACACAAGAAAAA---CCATTAATCCCGATATTCGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGG-------ACCGCCCG---GTCC-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCATTTC-A-TG-AATATTAATTCGTGGGTATTTCGGAGTAACTCATAACT-ATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACA---ATTNNNNN--NNNNNN-----NNNNNNNNNNNNNNATTGATTTGTTG---A-AATTGCAGGTGAAATTGTGATT-----TAA--TTTAA----AAA--------AAA-GATAATCCTGTAAT-TG---TTT--T---TT-A-TTA--TAAT--------TGATTA-TACAT-GCATTACT---ATGAAGAAAGTTCAAAATTG-T--AGCTTT-TGTATCATTTATATCC--ACATA--------ATGTAGTAGTATAACAAAAGATTTAGGCC--TATTGACTT
gi|20 : acAA--------ACA-GATATTCCTGTAATATGC-TCCT--T---GT-A-TTA--CA--------------TAGTACAT-GTATCAAA---AT-AAGAAAGTTGGAAATTG-----------------ATGTATATACAGATATA--------CTGGTGATGTATAACAAAAC
gi|21 : A-GATGTTCCTGTAATATGC-T---------------------AT--------TTAT-A-TGCAT-ATATTGAA---ATGACGAAAATTGGATATCA-A--TGTTTT-TGTATC-TTCATATAC--ATATA--------ATG
gi|22 : aaacccATCG-TGTTTATA-----CGCGAAAGTA-TCGCG--TT-GATT-----CGCG---AAAGTTTCGCAAAAGT---T-TCGCGTTGA----GTTACGCG-TT--A--TTTCGC----------A-A-AAGTTACGCgtg
gi|23 : caaCA---------TAGGTTTGTGGCAC-ATGCTTGGACTTACATTGTATATTATATCCTATACGTCACACAAGATAAACACGACGTCATATTTTGTTTTATCTC
gi|24 : TGACATGTCAAACT-------GACGTTGTAGATTACAGGCATGTTTTAATGG-ATATCGACAATCTTAACTGTAGTGTTCTAT---CATAAAC-------TAGGT
gi|25 : ATCT----TATAGTGTTCTAT---CATAAAG-------TAGGTTTCTCCTTATAGGCTTGTCCTAGGTTTATGGTGC-ATGCGCGGA
gi|26 : GAATGTGCCTTGTGTAT----CTGAAATAGCGACGTTAATT-----CGTGAAAGTTAACGCGTTTT-ATTC-----CGCG---Atct
gi|27 : aTATAAT----TAGATACAAGAAAAGGT-CCAGCAATCCCGATGTT-G----GGACTGT-T-GGTCCATTAAAA
gi|28 : CACGATTTGTATTGCAATGTTCAGTGATGACATGTCAAACTATGTCTAGACGTTGTAcc
gi|29 : ----GTTACGCG-TT--A--TTTCGC----------G-A-AAGTTACGCGCAAATTTGCGAAAGTTT----CGC-GTA
gi|3 : TTTGTTATATCCCTATAT-------TTATCTCTCTATATAAT----TCAACACAAGAAAAAGCGCCATTAATCCCGATATTCGCCTCGGACTGC-C--GTCCATTGAAAACTCGATGTTGG-------ACCGCCCGGTCGT-C-AACATCGT--TTTTCAATGGACCAGT----ATGATGTCATTTC-ATTG-AATATTAATTCGTGGGTATTTCGGA-TAACTCATAACTAATCCGTGAATTGGTATGACTCGTCAATAGT-GA--------A-----GGAACAATTATTGATTT--GTTGA------AATTGCAGG---------------TG---A-AA------------TTGTGATT-----TAA--TT--T----AAA--------AAA-GATAATCCTGTAAT-TG--TTTT--T---TT-A-TTAATTAAT--------TGATTA-TACATGGCATTACT---ATGAA-AAAGTTCAAAATTG-TACAGCTTT-TGTATCATTTATA-CC--ACATA--------ATGTAGTAGT-TAACAAAAGA-TTAGGCC--TATTGA-TTTGG-ATCTGCCTTATA-A-ATCTCTGAA-TATCG-CGTTAATTTATTACACGAAAGTT-ACGCG--TT-AATT-----CGC-------------------TT-ACATCGCG-AAA----GTTATGCA-TT--A--ATTCGC----------G-A-AAGT----------TTCGCAAAACTTT----C------------------------ACGTTTA-TTCGC-GAA-AGTT-ACGCGTTATTTCGCata
gi|30 : -CCAATAATCCCGATGTTCGCCTAGGACTGC-C-GGTCCATTGAAAACTCGATGTT
gi|31 : aTTTATATCC--ACATA--------ATGTGGAGGTATAACATGACATGTAGGCC--TATTGGCTTTG
gi|32 : ACACGATTTGTATTGCA
gi|32 : ATCG-TGTT--TT-----CGCGAAAGTT-TCGCG--TT-ATTT-----CGCG---AAtttcgcgaaagtttcgcgttatttcgcgaa
gi|33 : tgcaatacaaG-CGTTTATT-----TGCGAAAGTT-TCGAG--TT-TATT-----CGCG---AAAGTTTCGC----GTT-
gi|34 : TCAACAGT-GA--------A-----GAAACA---ATTGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-A
gi|35 : TTCA-TTCGCG-AA-AGTT-ACGCGTTATTTCGCG
gi|4 : TACAAGGGTAAATACTAATAATCCCGATGTTTGCCTCGGACTGC-C-GGTCCATTGAAAACTCGATGTTGGTCAATGGACCGCCCG---GT-C-AACATGGTG-TTTTCAATGGACCAGT----ATGACGTCATTTT-A-TG-AATATT----CCTGGGTA-TTCGGAGTAACTCGTAACT-ATTCGTGAATTGGTA------------------------------------------TCGATTT--GTTTAT-----GGCTGCAGG---------------TG---A-AA------------TTGTGATT-----AAA--GT--A----AAACATAAATAAAA-GATATTCCTGTAAT-TGT-TTTT--T---TTTA-TTA--CAATATAATTATTGATTG-TACAT-GCCTTACT---ATGAAGAAAGTTCAAAATTG-T--TGTTTT-TGTATCATTTATATCC--ACATA--------ATGTGGAGGTATAACAAAACATTTAGGCCTATATTGACT
gi|5 : cTGTTATACCCCTATATA------TCAT-TCTCTATATAATTA--TAGATAC-AGTATATGT-CAAACAATCCCGATGT-------------------TCTATTTAAAACTCAATGCTGG-------ACCACCCA---GT-C--------------------------------TGACGTCATCTC-A-TG-AATATT-----------------------CTT-TAACT-ATCTGTGAAGTGGTACGACTCGTCTATTGTAGA--------ACCCTTATAAGA---ACTGATTTCAG-TGATAAAAAGACTTCAGATCTTGTTCTTT----TA---ATAA------------TTGTTCTT-----TTG--TT--ATCATAAA--------AAACGACGTTCCTGTAATATGC-TTTT--T---GT-A-TGA--C-AT--------TTATCA-AA---------------ATGAGAAAAGTTGGAAATTG-A--TGTTTT-TGTATCATTTATAAAC--ATATA--------
gi|6 : TTGTTATACCACTATATATGTATATCAT-TCTCTATGTAAT----TAGATAGAAGAAAAAGT-CCAACAATCACAATGTTTGT-----ACTGC-T-GGTCCATTTAAAACTCGATGTTGG-------ACCACTCG---GC-C-CACACCATATTTTTCAATGGACCTGT----ATGACATCATCTCAA-TG-AAT----ATTCGTTGGTA-TTCGGAATAACTCGTAACT-AC------ATAGATATGACTCGTCAATCGTAGAACCCATATA-----TGAACA---ATTGATTT--c
gi|7 : ATGCG-TT--A--TAACGC----------G-ATAAGG-ACGCGTTAATTCGCGAA--TTTGTAGCGC--TATGA-CACAA-AAGTTACG-CATTTA-TTC-CAAAA-AGTT-ACGCGTTTATTCGCcagtgaaaaaagatttatttcaatgattctttatttgttgttttg
gi|7 : tatgtgagaCG-CGTTAATT-----CGCGAATTTG-TAGCG--CT-ATGA-----CACA---AAAGTTACGC----ATTTAT-TCCAA-AAA----GTTACGCG-TT--T--ATTCGCAATATAACGCG-A-ACGCTACGCGTTTATTCGTGAAACTTT----TGCATTATAT-CGCAG-aatataacgcgaacgctacgcgtttattcgtgaaacttttgcattatatcgcagttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|8 : tatgtgagaatgcgttataacgcgataaggaATTTTGTTATATCCCTATATG------TTAT-TCTCTATATAAT----TCAGCACAAGAAAAAAC-CCAATAATCCCGATGTTCGCCTTGGACTGC-C-GGTCCATTGGAAACTCGATGTTGG-------ACCGCCCG---GT-C-AACATCGTG-TTTTCAATGGACCAGT----ATGATGTAATTTT-A-TG-AATATCAATTCATGGGTA-TTTGGAGTAATTCGTAACT-ATCCGTGAATTGGTAttgtgttttgttgttgtggggtttttttccgggagggggggtgttttcgttgttttttcagtttcgagaatgagcactctgagctttcatagtttc
gi|9 : C-C-GGTCCACTGAAAACTCCATGTAGA-------ACTGTTCA---GC-CTATCATTGAG-TTTCCAAT-GACCAAT----CCGACGTCATC-G-A-CGCACTAGGATTTCGCGGGCC-ATCGGGCTAACTTGTAA-T-AT