lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 1 33333 333 44444444 111 555555 11111 777777777777777777777777777777777777777777 111 11 333333333333333333333 3 1 999999999999999999999999999999 111 11 44444444 2 2 2 333333333333333333333333333333333333333333333333333333333333333333 1 1 666666666666666 111 1 1 555555555555 11 11 11 222222222222222222222222222222222222222222222 3333333 333333333 55555555555555 5555 11 44444 2222222222 1 333 1 1 2222 1
lowQualScore : 6 99999 444 5 99999999 000 000000 1 6 1 44444 888888888888888888888888888888888888888888 3 111 6 2 99999 1 11 333333333333333333333 6 1 4 6 0 333333333333333333333333333333 1 6 444 11 6 44444444 8 1 5 0 0 2 999999999999999999999999999999999999999999999999999999999999999999 0 5 333333333333333 000 3 5 2 0 9 555555555555 00 66 3 55 6 666666666666666666666666666666666666666666666 6 8888888 3 777777777 8 8 33333333333333 6 7777 0 22 2 44444 2 3333333333 2 555 4 5 5 9999 5
lowQualScore : . ..... ... . ........ ... ...... . . . ..... .......................................... . ... . . ..... . .. ..................... . . . . . .............................. . . ... .. . ........ . . . . . . .................................................................. . . ............... ... . . . . . ............ .. .. . .. . ............................................. . ....... . ......... . . .............. . .... . .. . ..... . .......... . ... . . . .... .
lowQualScore : 0 44444 666 7 33333333 000 111111 4 0 4 44444 444444444444444444444444444444444444444444 2 777 7 8 66666 0 00 888888888888888888888 7 7 8 7 3 888888888888888888888888888888 7 7 222 00 5 00000000 0 2 0 0 0 5 555555555555555555555555555555555555555555555555555555555555555555 0 0 222222222222222 222 0 5 5 8 2 555555555555 22 88 2 55 5 111111111111111111111111111111111111111111111 0 6666666 2 111111111 0 0 00000000000000 6 0000 1 66 5 55555 5 3333333333 0 000 0 5 0 0000 0
consensus : GTCC-GAATAGTTTTC--CAGTTC-CGAATGA-TTT-------AAGTTT---GATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-----AAAT--TA-AAACAT--------------T------ACGATAATAA-C-TT-TAATCCTTCATCTGTTAGATAA--TTCTTCANATT------TTTC-GTAATTTAC-TGAGCGC-ATGGATTTTGTT-AGCTCCTTGAAAAGAGNGGGT-CTTGAA------TTTTGC---CGAAAAATC-CG-C-ATG--TTTGNTTTA--TCCG-AAAA-AATCGGGAAGCCCCCTCATTTTTCAAGACGTNAATA-AAA-GTATANATTGTTTT---A---AAA-CTACATAAATTATG--C--GATGATTCTTCA-GATGAAAGATCAAATTTCTAAACNTTT-ATTTCAATCCAAANTTTTATTCTTCTTTCAGAT-TGCG--TTTTCTA-CCCCTN-TGAATAGGGGNTATTCGGAA-CTGG-GAAATCG-T--CAAGGCGCACCAA-AATGGGG-----C-GTCTTTTTCCGGTCGTCATAGAAANTCTAGA-TGGTGA-C-TTANTACAAAGAACT-ATTTTGTGTGATATTTAAA---GTAAAAAGTTCAAATNNATTGTTGGTAT-GGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATGATATCATCCCNGCCTAAAAATACCCCATTCGGATACTTAGGCAAA
Reference ( gi|1 ) : GTTC-GAATAGTT--C--CAGT-C-CGAATAA-TT--------AAGTTT---AATGCAGTTAAAAACTTTATCTTTTCGTGCGAAATT----ATTT----GAAAT--TA-AAACAT--------------T------ATGATAATAA-C-TT-TAATCTTTCATCTGCTAAATAA--TTCTTCAAATT------TTTT-GTTATTTAC-TGAGCGCGATGAATTTTGAT-AGCTCCTTAAAAAGAACGAGT-TTTAAA------TTTTGC---CGAAAAATC-CG-C-ATG--TTTGGTTTA--TTTG-AAAA-AATCGGAAAGACTCCTCA-TTT-CAAGACGTGAAGA-AAA-GTATGAATGGTTCT---A--TAGA-CTACATAAACTATG--G--GATGGTC--TCA-GAGGAAAGATCAAGTCTCTATATTTTTTATTTCAATTCAAATTTTTATTCTTCTTTTAGAT-TGCA--TTTTCTA-CCCCTT-TGAATATGGGCTATTCGGAAACTGGTAAAATCGATGGCAAGGCTCACCAA-AATGGGG-----C-GTCTTTTTTCGGTCATCATAGAAACTCTAGAATGGTGA-C-TTAGTACAAAGAAC--ATTTTGTGAGATATTTAAAAAAGTAAAAAGTTCAAATTAATTGTTGGAATTGGGAAAAATGATTTCAAACACGTAAACGTAGAAGATGATATT---CCAGTCTAAAAATAACCTATTCGGA-ACTTAGCCAAA
gi|2 : GTTCTGAATCGTTTTC--CAGTTC-CGAATAAGTT--------AAGTTT---GATG-AGT-AAAATTTTTATCTTCTCGTACAAAATT-----TTT----CAA----TA-AATCAT--------------T------ATGATAATAA-AATT-TAATCCTTCATCTGTAGAATAA--TTCT--ACATT------TTTTCATAATTTAC-TGGGCGC-ATGAATTTTGTT-AGCTCCTTG-AAAAGATGG-------AA------T---GC---TCAA-----------------TTAATTT----CTG-AAAA-AATCGGGAAGCCACCTAA-TTTTCAAGA--TGAAAATAAA-GTATCTGTTGTTTT---A--AAAATCTAACTAAGTTATG--CTTGAT--TC--TTAAGACGAAAGATCAAG---------------TCTCAA----AACTTTTATT------TCAG---T-----TTTTCTA-TCCCTG-TG-ATA---------CGGAA-CAG--------------AGGGCGCGCCGG-GG-GGGGAGAGAC-GTCATTTTCCG----TCATAAAA-----------GTGA-CCTTTGTA--AATATT--ATTTTGTATGATATCTAAAA---TAAA--GTTCAAATATATTGTTAGTAT--GGAAAAATGGTTTCAAACAAGTAA--GGAGGAAAT-ATATTATCCCAGTCT-AAAATACCCTATTCGGA-ACT
gi|5 : taggttttcctaGTTCAGAATAGTTGTC--CAGTTC-CGAATAA-TTT-------AAGTTT---GATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT------AAA---TA-AAACAT--------------T------ACGATAATAA-A-TTGTTATTTACCATCTATTAAATTA--CTCT--ACACT------TTTC-ATAATTTAC-TGAGCAC-ATGGATTTTTGTAAGCTCCATAAAAAGGA-GTGC-TTCA---------TTTCC---CG-AAAATC-CGCC-ATG--TTTGTTTTA----TGAAAAA-AAGTGGAAAG-CCCCTCATTTT-TAAGACGTAAAT--AAA-GTATAAACAGTTatatagga
gi|9 : gtcatttgcctaTCC-GAATAGTTTTC--CAGT-TACGAATAA-TTT-------AAGTTC---AATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT------AAAC---A-AAACAT--------------C------ACGATAA----C-TT-TAATCCTTCCTCTCTTAGATAATTTTTTTTTTATT------TTTG-GTAATTTAC-TGAGAGC-ATGAATTTTGTT-ACTTCCTTAAAAAGAGGGAGTGCTTGA--------TTTGC-----AAAAATC-CGAC-ATG--taattgt
gi|10 : atttgcctagtTCC-GAATCGTT--TTGCAGT-TTCAAATGA-TTTTGTTTTTAATTTT---GACG-AGT-GAAAACTGTATCTTCTCGTACAAAATT----GTCC-------AT--TA-ATACAT--------------TGATATTATGATAATAAAC-TT-TATTCATTCATCTATTTGATAA--TTCTTCAATTTTCATAATTTT-CTTATTTATATGATCGC-ATGACTTTTGTT-AGCTCCTTGAAAA
gi|15 : gtggttttcctactTCC-GAATAGTTTGC--CAGTTC-CGAATGA-TTT-------AAGTTT---AAAG-AGT-GAAAACTT-ATCTTCTCGTACGAAATT----ATT------AAAT--
gi|7 : tcatttgccaagtAATAGTTTTC--CAGTTC-CAAATAA-TTT-------AAGTTT---AATG-AGTGAA-------ATCTTCCCGTACTAAATTCGTAATTTAATAGAAATAATATATACATATATGTATAATCAAT------GTGATAATAA-C-TT-TAATCCTTCAT-TGTTA--------TTTCCAAATT---------------TTTAC-TGATCGT-ATGGATGTTGTT-GGCTCGTTGAAAAGTGAGGGG-CTTAAA-----------------AAAAATC-CG-C-aa
gi|3 : cagtgatctctctagttccaaaaccgaTT--C--CAGTTC-CGAATGA-TTT-------AAGTTTCATAATA-AGT-GAAAACTTTATCTTCTGGTACGAAATT----GTTC-------AG--TA-AAAC-----------------------ATAATA--AA-C-TT-TAATATTtat
gi|16 : agtggttttcctagttccaaatcattACT------TTTC-ATATTTTAC-TCGGCGCG-TGGATTTTGCT-AGCTCCCTAAAAAGAGGGAGT-GTTaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatggattgtttttgaagttaaaccaaaatcatgcgtgattcttcagatgcaaaatcaaatttcaaaacgtttatttcaatcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|3 : acTTGAAATAAACG--T-TTTGAAATTTGATTTTGCATCTGAAGAATCACG-C-ATGATTTTGGTTTAACTTCA-AAAACAATCt
gi|8 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatgAAAGTC-CG-CCATG--TTTGTTTTA--T--G-AAAA-TATCGGAAAACCTCCTCATTTT-CAA----------------TATA------TCT-------------ACATAAATTATGCAT--GATGA-A--TCA-GATGAAAGATCGAATTTCTA-AACTTTTAATTCAATCCAAA-TTTTATTCTTC-TTTAAA--TGCGTTTTTTTTA-CCCCTG-TGAATAGGGGATATTCGGAAGTT------AT-------AAGG--CACAAA-TAT-AGG-----C-GTC-TTTGTCGTTC-TCATAGAAtcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|3 : tcttg-AATTGGGAAGCCCCCTCA-TTTTCAAGACGTTTATA-AAGCGTATGGATTGTTTTTGAAGTTAAA-CCA---AAATCATG--C--G-TGATTCTTCA-GATGCAAAATCAAATTTCAAAACGTTT-ATTTCAATCGAAAGTCC-ATTCTCCTTT---ATATGCA--TTGTCCAACCCCTTGTAAACAGAGGTTATTCGGAA-CTGGGGAAATCG-TTGTAAAGCACAACAATAA----G-----T-GTCTTTTTC--GTCGTCATA-AAATTATA-AATGGTGA-C-CT-TTACA--GAATTTATTTTGTGTGACATTTAAA---GTAAAAA-TTCAAATATACTGTTGGTAT--GGAAAAATGGTTTCAAACA
gi|6 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttTACATAAATTATG--C---ATGATTCTTCA-GATGATAGATCAAATTTCTAAACTATT-ATTTCAATTCAAATTTT-ATTCTTCTTT-AGAT--GCA--TTTTCTA-ACCACC-TGAATATGGGCTATTCGGAA-CTGGTAAAATCGATG-CAAGGC--ACCAA-AATTAG------C-GTCTTTTTC--GTCATCATAGAAACTCTAGA-TGGTGA-C-TTA-TACAA-GAACT-ATTTTGTGAGATATTTAAA---GTAAAAAGTTCAAATTAATTGTTGGAAT--GGAAAAATGATTTAAAACACGTA
gi|4 : -AATGGTT-----CTGTCTTTTTC--ATCGTCATAGAAGAACTAGA-TGGAAATC-CTAG---GAAGAAA--ATATTGTGTGGTTTTTAA----GTTAAAAGTTTAATTTTAGTTTTAG---TGTGACAAATGGTTTCAAACACAT-GACGTAG-AGAT
gi|18 : ttcgacacgtgggaagaacctcgttggagggcgacaaacaattgggTAGA-TGATGA-C-TT-TTACAA-GAACT-ATTTGGTGAGATATTTAAA---GTAAAAAGTTCAAATTagcgactgtaaagtggttcgaactcagttttctttattttctcataaactgataattcaagtgatttagcccgatctacatctacttttagtcacgtcactttcagaatgtggagcaacaagcacgttcat
gi|14 : AGTATAGAGTTCAAATACATTGGTGGTAT-GGGGAAAATGCTTTCAAACATGTAA-CA-AAAAGATGATATC---CCTGCCTAAAAATACCCCATTCGGATA--TAGGCAAA
gi|11 : AAAGTTTAAATTGATT-TTAG---TGTGTAAAATGATTCCAAACACA-AGATGTAG-AGATAAt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACAGTGGTCTCTCCAATTCCGAATCATTTTCCAGTTTCAACTTATATTTAAGTTATGATTGAGAATCTTCTCGAAGAAATTGTTGAATAAAAGAGTTATGATATAAAACTTTATCACATGTTTACTCTTTATATATTTGTACATAAGAGTTGCATTAATTATTATTAGATTACCCCTT
Unaligned ( gi|13 ): AGAGATAGCGACTGTAAAGTGGTTCGAACTCGGTTTTCTTTATTTTCTCATATACTGATAATTCAAGTGATTTAGCCAGATCTACATGTACATCTACTTTTAGTCACGTCACTTTCAG
Unaligned ( gi|17 ): ATCCATTTGACCAGTTCCGAATGTTGGCCAGTTCCCAATACTTTGGGGATTTAAGAGTCA
Alignments
lowQualScore : 1111111 4444444444444 33333333333333333333333 1 11 11111 222222222 1111 11111 3333333333 111 22 1 1 1 111111 1 33333333 111 22 22 4444444 11111 1 8888888888888888888888888888888888888888888888888888 44 22 111 111 111 1 444 4444444
lowQualScore : 4 1 777 4 4444444 9999 4 4 4 1 9999 3333333333333 5 00000000000000000000000 3 5 0 5 0 1 0 11 5 77 3 44 00000 000000000 5 5 5 5 0000 5 44 99999 1 6666666666 444 1 3 99 0 5 1 0 0 777777 8 22 0 33333333 444 0 55 5 1 8 1 6 00 0 7777777 4 0 33333 1 0 0 3 6 4444444444444444444444444444444444444444444444444444 22 1 888 6 77 1 7 333 4 111 1 22 0 5 222 0 77 5 3 6 222 1 0 7 0 3333333
lowQualScore : . . ... . ....... .... . . . . .... ............. . ....................... . . . . . . . .. . .. . .. ..... ......... . . . . .... . .. ..... . .......... ... . . .. . . . . . ...... . .. . ........ ... . .. . . . . . .. . ....... . . ..... . . . . . .................................................... .. . ... . .. . . ... . ... . .. . . ... . .. . . . ... . . . . .......
lowQualScore : 4 7 888 4 4444444 4444 4 4 8 8 4444 7777777777777 0 88888888888888888888888 1 0 0 0 4 7 7 44 1 99 9 22 11111 000000000 0 0 0 0 6666 7 33 55555 4 8888888888 222 0 2 55 0 0 4 6 6 666666 0 88 8 00000000 000 8 66 6 4 0 0 4 22 8 0000000 6 6 00000 0 8 0 8 7 3333333333333333333333333333333333333333333333333333 55 0 666 7 00 7 3 555 0 777 7 00 7 7 999 4 22 6 2 5 777 0 7 3 7 7777777
consensus : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAGTTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAA-GAGNGAGT-CTTGAA-TTTGCCGAAAAATCCG-C-ATGTTTGNTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGNATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTCTTT-AGAT-TGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-TTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATGAT---ATCCCAGTCTAAAAATACCCTATTCGGA-ACT---TAGGCAAA
Reference ( family-904 ) : GTCCGAA-TAGTTTTCCAGTTCCGA---ATGATTT-------AAGTTT---GATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAGATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGGA-TT-TTGTTAG----CTCCTTGAAAA-GAGNGGGT-CTTGAATTTTGCCGAAAAATCCG-C-ATGTTTGNTTTATCCG-AAAAAATCGGGAAGCCCCCTCATTTTTCAAGACGTNAATAAAA-GTATANATTGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACNTTTATTTCAATCCAAANTTTTATTCTTCTTTCAGAT-TGCGTTTTCT--A--CCCCTNTGAATAGGGGNTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATGGGG--------CGTCTTTTTCCGGTCGTCATAGAAANTCTAG-ATGGTGACTTANTACAAAGAA-CTATTTTGTGTGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATGATATCATCCCNGCCTAAAAATACCCCATTCGGATACT---TAGGCAAA
gi|1 : GTTCGAA-TAGTT--CCAGT-CCGA---ATAATT--------AAGTTT---AATGCAGTTAAAAACTTTATCTTTTCGTGCGAAATT----ATTTGAA-----AT--TAAA-AC------A-T--------------TATGATA-AT-AACTT-TAATCTTTCATCTGCTAAATAA--TTCTTCAAATTTTT---TGTTATTTAC---------TGAG-CGCGATGAA-TT-TTGATAG----CTCCTTAAAAA-GAACGAGT-TTTAAATTTTGCCGAAAAATCCG-C-ATGTTTGGTTTATTTG-AAAAAATCGGAAAGACTCCTCA--TTTCAAGACGTGAAGAAAA-GTATGAATGGTTCT-ATAGA--CTA---CATAAACTATGGGATGGT--CTCAGAGGAAAGATCAAGTCTCTATATTTTTTATTTCAATTCAAATTTTTATTCTTCTTTTAGAT-TGCATTTTCT--A--CCCCTTTGAATATGGGCTATTCGGAAAC-T-GGTAAAA----TCGATGGC--AAGGCTCACCAA-AATGGGG--------CGTCTTTTTTCGGTCATCATAGAAACTCTAGAATGGTGACTTAGTACAAAGAA-C-ATTTTGTGAGATATTTAAAAAAGTAAAAAGTTCAAATTAATTGTTGGAATTGGGAAAAATGATTTCAAACACGTAAACGTAGAAGATGAT---ATTCCAGTCTAAAAATAACCTATTCGGA-ACT---TAGCCAAA
gi|10 : TCCGAA-TCGTTTTGCAGTTTCAA---ATGATTTTGTTTTTAATTTT---GACG-AGT-GAAAACTGTATCTTCTCGTACAAAATT----GTCC--------AT--TAAT-ACATTGATA-T--------------TATGATA-ATAAACTT-TATTCATTCATCTATTTGATAA--TTCTTCAA--TTTT---CATAATTTTCTTATTTATATGAT-CGC-ATGAC-TT-TTGTTAG----CTCCTTGAAAA-
gi|11 : gtggttttcctactAAAGTTTAAATTGATT-TTAGTG-TGT--AAAATGATTCCAAACACA-AGATGTA-GAGATAA
gi|12 : TCCGAA-TCATTTTCCAGTTTCAACTTAT-ATTT-------AAGTT-----ATG-ATT-GAGA-----ATCTTCTCG-AAGAAATT----GTTG-AA---------TAAA-AG------AGT--------------TATGATATAA-AACTT-TA-----TCACATGTT---T-A--CTCTTTATATATTTGTACATAA---------------GAGTTGC-ATTAA-TTATTATTAGATTACCCCTTcgagtgtatagtggttcgaactcagttttctttattttttcgcaaactgataatttaagtgatctaacccgatttgttctcctacatctaccggtaaatttcagaattcgaagtaacaaacacgttctta
gi|14 : acagtggtctctccaatAGTATAGAGTTCAAATACATTGGTGGTA-TGGGGAAAATGCTTTCAAACATGTA-ACA-AAAAGATGAT---ATCCCTGCCTAAAAATACCCCATTCGGATA-----TAGGCAAA
gi|15 : TCCGAA-TAGTTTGCCAGTTCCGA---ATGATTT-------AAGTTT---AAAG-AGT-GAAAAC-TTATCTTCTCGTACGAAATT----ATT--AA-----AT--t
gi|16 : tcatttgccaagtACACTTTT---CATATTTTAC---------TCGG-CGC-GTGGA-TT-TTGCTAG----CTCCCTAAAAA-GAGGGAGT-GTTaa
gi|18 : TAG-ATGATGACTT-TTACAA-GAA-CTATTTGGTGAGATATTT---AAAGTAAAAAGTTCAAATt
gi|2 : TCTGAA-TCGTTTTCCAGTTCCGA---ATAAGTT-------AAGTTT---GATG-AGT-AAAATTTTTATCTTCTCGTACAAAATT----TTTC-AA---------TAAA-TC------A-T--------------TATGATA-ATAAAATT-TAATCCTTCATCTGTAGAATAA--TTCTACAT-TTTTT---CATAATTTAC---------TGGG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAA-GA--------TGGAA---TGCTCAA--------------TTAATT--TCTG-AAAAAATCGGGAAGCCACCTAA-TTTTCAAGATGAAAAT-AAA-GTATCTGTTGTTTT-A-AAAATCTA---ACTAAGTTATGCT-TGATTCTTAAGACGAAAGATCAAGTCTCAA-AACTTTTATTTCAGT------TTTT------------------------CT--A--TCCCTGTG-ATA---------CGG-AAC-A-GA-G-------------------GGCGCGCCGG-GG-GGGGAGAGA---CGTCATTTTC----CGTCATAAAA-----------GTGACCT-TTGTAAAT-A-TTATTTTGTATGATATCT---AAAAT--AAAGTTCAAATATATTGTTAGTA-T-GGAAAAATGGTTTCAAACAAGTAA--GGAGGAAAT-ATATTATCCCAGTCT-AAAATACCCTATTCGGA-ACTATATAGGt
gi|3 : taggttttcctagtTCCAAA-TCATTTTCCAGTTCCGA---ATGATTT-------AAGTTTCATAATA-AGT-GAAAACTTTATCTTCTGGTACGAAATT----GTTC-AG---------TAAA-AC------A-T-----------------AATA----AACTT-TAATa
gi|3 : agtggttttcctagtAATTGGGAAGCCCCCTCATTTT-CAAGACGTTTATAAAGCGTATGGATTGTTTTTG-AAG--TTAAACCA-AAATCATGCG-TGATTCTTCAGATGCAAAATCAAATTTCAA-AACGTTTATTTCAATCGAAAG-TCCATTCTCCTTT---ATATGCATTGTCC--AACCCCTTGTAAACAGAGGTTATTCGG-AAC-TGGG-GAAA----TCG-TTGT--AAAGCACAACAATAA----G--------TGTCTTTTTC--GTCGTCATA-AAATTATAA-ATGGTGACCT-TTAC--AGAATTTATTTTGTGTGACATTT---AAAGTAAAAA-TTCAAATATACTGTTGGTA-T-GGAAAAATGGTTTCAAACAattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatggattgtttttgaagttaaaccaaaatcatgcgtgattcttcagatgcaaaatcaaatttcaaaacgtttatttcaatcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|4 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttTTCGA-CACGT-GG-GAAGAACCTCG-T--TGGAGGGCG-ACAAACAATTGGGAATGGTTCTGTCTTTTTC--ATCGTCATAGAAGAACTAG-ATGGAAA--TCCTAGGAAGAA-A-ATATTGTGTGGTTTTT---AA-GTTAAAAGTTTAATTTTAGTTTTAGTG-TG--ACAAATGGTTTCAAACACAT-GACGTA-GAGAT
gi|5 : TCAGAA-TAGTTGTCCAGTTCCGA---ATAATTT-------AAGTTT---GATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT--AA-----A---TAAA-AC------A-T--------------TACGATA-AT-AAATTGTTATTTACCATCTATTAAATTA--CTCT--ACACTTTT---CATAATTTAC---------TGAG-CAC-ATGGATTT-TTGTAAG----CTCCATAAAAAGGAGTG----CTTCA--TTTCCCG-AAAATCCGCC-ATGTTTGTTTTAT--GAAAAAAAGTGGAAAG-CCCCTCATTTTT-AAGACGTAAAT-AAA-GTATAAACAGTTTagcgactgtaaagtggttcgaactcagttttctttattttctcataaactgataattcaagtgatttagcccgatctacatctacttttagtcacgtcactttcagaatgtggagcaacaagcacgttcat
gi|6 : gtcatttgcctagtTA---CATAAATTATGC-ATGATTCTTCAGATGATAGATCAAATTTCTA-AACTATTATTTCAATTCAAA-TTTTATTCTTCTTT-AGAT--GCATTTTCT--A--ACCACCTGAATATGGGCTATTCGG-AAC-T-GGTAAAA----TCGATG-C--AAGGC--ACCAA-AATTAG---------CGTCTTTTTC--GTCATCATAGAAACTCTAG-ATGGTGACTTA-TACAA-GAA-CTATTTTGTGAGATATTT---AAAGTAAAAAGTTCAAATTAATTGTTGGAA-T-GGAAAAATGATTTAAAACACGTAaattgt
gi|7 : CCGAAATAGTTTTCCAGTTCCAA---ATAATTT-------AAGTTT---AATG-AGT-GAAA------TCTTCCCGTACTAAATTCGTAATTT-AATAGAAATAATATATAC------A-TATATGTATAATCAATGTGATA-AT-AACTT-TAATCCTTCAT-TGTTA--------TTTCCAAATT-----------TTTAC---------TGAT-CGT-ATGGA-TG-TTGTTGG----CTCGTTGAAAA-GTGAGGGG-CTTAAA--------AAAAATCCG-C-
gi|8 : cagtgatctctctagttccaaaaAAAGTCCG-CCATGTTTGTTTTAT--G-AAAATATCGGAAAACCTCCTCATTTT-CAA-----------------TATAT--------------CTA---CATAAATTATGC-ATGATGAATCAGATGAAAGATCGAATTTCTA-AACTTTTAATTCAATCCAAA-TTTTATTCTTCTTT-AAAT--GCGTTTTTTTTA--CCCCTGTGAATAGGGGATATTCGG-AA----------G----TTA-T-----AAGGCACA--AA-TATAGG---------CGTCTTTGTC--GTTCTCATAGAAtat
gi|9 : tcttgTCCGAA-TAGTTTTCCAGTTACGA---ATAATTT-------AAGTTC---AATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT--AA-----A---CAAA-AC------A-T--------------CACG----AT-AACTT-TAATCCTTCCTCTCTTAGATAATTTTTTTTTTATTTTT---GGTAATTTAC---------TGAG-AGC-ATGAA-TT-TTGTTAC----TTCCTTAAAAA-GAGGGAGTGCTTGA--TTTGC--AAAAATCCGAC-ATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGAGATAGCGACTGTAAAGTGGTTCGAACTCGGTTTTCTTTATTTTCTCATATACTGATAATTCAAGTGATTTAGCCAGATCTACATGTACATCTACTTTTAGTCACGTCACTTTCAG
Unaligned ( gi|17 ): ATCCATTTGACCAGTTCCGAATGTTGGCCAGTTCCCAATACTTTGGGGATTTAAGAGTCA
Alignments
lowQualScore : 1111111 444444444444 33333333333333333333333 1 11111 222222222 1111 111 2222222222222222 111 1111 1 1 11 11111 11111 33333333 111 22 22 11111 8888888888888888888888888888888888888888888888888888 111 111 111 1 1 111 2222
lowQualScore : 4 5 0 777 0 3333333 55 777 4 4 2 1 9999 333333333333 5 00000000000000000000000 3 5 0 5 0 1 0 99 5 77 3 44 00000 000000000 5 5 5 5 0000 444 7777777777777777 444 1 6666 0 5 1 0 33 55 44444 33333 33333333 444 0 55 5 1 8 6 8 3 8 3 11 0 33333 0 8 3 6 2222222222222222222222222222222222222222222222222222 000 1 888 6 88 9 333 1 111 1 22 0 5 8 0 77 5 3 111 7 0 2222 0
lowQualScore : . . . ... . ....... .. ... . . . . .... ............ . ....................... . . . . . . . .. . .. . .. ..... ......... . . . . .... ... ................ ... . .... . . . . .. .. ..... ..... ........ ... . .. . . . . . . . . .. . ..... . . . . .................................................... ... . ... . .. . ... . ... . .. . . . . .. . . ... . . .... .
lowQualScore : 0 5 7 000 4 0000000 55 000 0 0 0 8 4444 777777777777 0 88888888888888888888888 1 0 0 0 4 7 7 66 1 99 9 22 11111 000000000 0 0 0 0 6666 333 3333333333333333 222 0 2222 0 0 4 6 88 00 00000 44444 00000000 000 8 66 6 4 0 4 0 8 0 2 00 6 00000 8 8 2 7 5555555555555555555555555555555555555555555555555555 222 0 000 7 55 8 555 0 777 7 00 7 7 6 4 22 6 2 000 3 8 8888 8
consensus : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-----AAAT--TA-AAAC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTGAA-TTTGCCGAAAAATCCG-C-ATGTTTGNTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTA--TAGGCAAA
Reference ( family-904 ) : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-----AAAT--TA-AAAC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGNGAGT-CTTGAA-TTTGCCGAAAAATCCG-C-ATGTTTGNTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGNATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-TTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACT---TAGGCAAA
gi|1 : GTTCGAA-TAGTT--CCAGT-CCGA---ATAATT--------AAG--TTT---AATGCAGTTAAAAACTTTATCTTTTCGTGCGAAATT----ATTTG----AAAT--TA-AAAC------A-T--------------TATGATA-AT-AACTT-TAATCTTTCATCTGCTAAATAA--TTCTTCAAATTTTT---TGTTATTTAC---------TGAG-CGCGATGAA-TT-TTGATAG----CTCCTTAAAAAGAACGAGT-TTTAAATTTTGCCGAAAAATCCG-C-ATGTTTGGTTTATTTG-AAAAAATCGGAAAGACTCCTCA--TTTCAAGACGTGAAGAAAA-GTATGAATGGTTCT-ATAGA--CTA---CATAAACTATGGGATGGT--CTCAGAGGAAAGATCAAGTCTCTATATTTTTTATTTCAATTCAAATTTTTATTCTTCTTTTAGATTGCATTTTCT--A--CCCCTTTGAATATGGGCTATTCGGAAAC-T-GGTAAAA----TCGATGGC--AAGGCTCACCAA-AATGGGG--------CGTCTTTTTTCGGTCATCATAGAAACTCTAGAATGGTGACTTAGTACAAAGAA-C-ATTTTGTGAGATATTTAAAAAAGTAAAAAGTTCAAATTAATTGTTGGAATTGGGAAAAATGATTTCAAACACGTAAACGTAGAAGATG-A-TATTCCAGTCTAAAAATAACCTATTCGGAACT---TAGCCAAA
gi|10 : TCCGAA-TCGTTTTGCAGTTTCAA---ATGATTTTGTTTTTAAT--TTT---GACG-AGT-GAAAACTGTATCTTCTCGTACAAAATT----GTCC-------AT--TA-ATACATTGATA-T--------------TATGATA-ATAAACTT-TATTCATTCATCTATTTGATAA--TTCTTCAA--TTTT---CATAATTTTCTTATTTATATGAT-CGC-ATGAC-TT-TTGTTAG----CTCCTTGAAAA
gi|11 : gtggttttcctactAAAGTTTAAATTGATT-TTAGTG-TGT--AAAATGATTCCAAACACA-AGATGTA-GAGATA-A-
gi|12 : TCCGAA-TCATTTTCCAGTTTCAACTTAT-ATTT-------AAG--TT-----ATG-ATT-GAGA-----ATCTTCTCG-AAGAAATT----GTTG-----AA----TA-AAAG------AGT--------------TATGATATAA-AACTT-TA-----TCACATGTT---T-A--CTCTTTATATATTTGTACATAA---------------GAGTTGC-ATTAA-TTATTATTAGATTACCCCTTcgagtgtatagtggttcgaactcagttttctttattttttcgcaaactgataatttaagtgatctaacccgatttgttctcctacatctaccggtaaatttcagaattcgaagtaacaaacacgttctta
gi|14 : acagtggtctctccaatAGTATAGAGTTCAAATACATTGGTGGTA-TGGGGAAAATGCTTTCAAACATGTA-ACA-AAAAGATG-A-TATCCCTGCCTAAAAATACCCCATTCGGA--TA--TAGGCAAA
gi|15 : CTATTCGGAACT---T-GGCAAAt
gi|15 : tcaTCCGAA-TAGTTTGCCAGTTCCGA---ATGATTT-------AAG--TTT---AAAG-AGT-GAAAAC-TTATCTTCTCGTACGAAATT----ATT------AAAT--tttgccagttccgaatgatttaagtttaaagagtgaaaacttatcttctcgtacgaaattattaaataa
gi|16 : tcatttgccaagtACACTTTT---CATATTTTAC---------TCGG-CGC-GTGGA-TT-TTGCTAG----CTCCCTAAAAAGAGGGAGT-GTTaa
gi|17 : TCCGAA-T-GTTGGCCAGTTCCCA---ATACTTT-------GGGGATTT---AA-G-AGT-t
gi|18 : atccatttgaccagtTAG-ATGATGACTT-TTACAA-GAA-CTATTTGGTGAGATATTT---AAAGTAAAAAGTTCAAATca
gi|2 : TCTGAA-TCGTTTTCCAGTTCCGA---ATAAGTT-------AAG--TTT---GATG-AGT-AAAATTTTTATCTTCTCGTACAAAATT----TTTC-----AA----TA-AATC------A-T--------------TATGATA-ATAAAATT-TAATCCTTCATCTGTAGAATAA--TTCTACAT-TTTTT---CATAATTTAC---------TGGG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGA--------TGGAA---TGCTCAA--------------TTAATT--TCTG-AAAAAATCGGGAAGCCACCTAA-TTTTCAAGATGAAAAT-AAA-GTATCTGTTGTTTT-A-AAAATCTA---ACTAAGTTATGCT-TGATTCTTAAGACGAAAGATCAAGTCTCAA-AACTTTTATTTCAGT------TTT-----------------------TCT--A--TCCCTGTG-ATA---------CGG-AAC-A-GA-G-------------------GGCGCGCCGG-GG-GGGGAGAGA---CGTCATTTTC----CGTCATAAAA-----------GTGACCT-TTGTAAAT-A-TTATTTTGTATGATATCT---AAAAT--AAAGTTCAAATATATTGTTAGTA-T-GGAAAAATGGTTTCAAACAAGTAA--GGAGGAAATATATTATCCCAGTCT-AAAATACCCTATTCGGAACTATATAGGt
gi|3 : taggttttcctagtTCCAAA-TCATTTTCCAGTTCCGA---ATGATTT-------AAG--TTTCATAATA-AGT-GAAAACTTTATCTTCTGGTACGAAATT----GTTC-----AG----TA-AAAC------A-T-----------------AATA----AACTT-TAATa
gi|3 : agtggttttcctagtAATTGGGAAGCCCCCTCATTTT-CAAGACGTTTATAAAGCGTATGGATTGTTTTTG-AAG--TTAAACCA-AAATCATGCG-TGATTCTTCAGATGCAAAATCAAATTTCAA-AACGTTTATTTCAATCGAAA-GTCCATTCTCC-TTTATA-TGCATTGTCC--AACCCCTTGTAAACAGAGGTTATTCGG-AAC-TGGG-GAAA----TCG-TTGT--AAAGCACAACAATAA----G--------TGTCTTTTTC--GTCGTCATA-AAATTATAA-ATGGTGACCT-TTAC--AGAATTTATTTTGTGTGACATTT---AAAGTAAAAA-TTCAAATATACTGTTGGTA-T-GGAAAAATGGTTTCAAACAattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatggattgtttttgaagttaaaccaaaatcatgcgtgattcttcagatgcaaaatcaaatttcaaaacgtttatttcaatcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|4 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttTTCGA-CACGT-GG-GAAGAACCTCG-T--TGGAGGGCG-ACAAACAATTGGGAATGGTTCTGTCTTTTTC--ATCGTCATAGAAGAACTAG-ATGG-AAATC-CTAGGAAGAA-A-ATATTGTGTGGT-TTT---TAAGTTAAAAGTTTAATTTTAGTTTTAGTG-T--GACAAATGGTTTCAAACACAT-GACGTA-GAGAT
gi|5 : TCAGAA-TAGTTGTCCAGTTCCGA---ATAATTT-------AAG--TTT---GATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT------AAA---TA-AAAC------A-T--------------TACGATA-AT-AAATTGTTATTTACCATCTATTAAATTA--CTCT--ACACTTTT---CATAATTTAC---------TGAG-CAC-ATGGATTT-TTGTAAG----CTCCATAAAAAG---GAGTGCTT-CA-TTTCCCG-AAAATCCGCC-ATGTTTGTTTTA--TGAAAAAAAGTGGAAAG-CCCCTCATTTTT-AAGACGTAAAT-AAA-GTATAAACAGTTTagcgactgtaaagtggttcgaactcagttttctttattttctcataaactgataattcaagtgatttagcccgatctacatctacttttagtcacgtcactttcagaatgtggagcaacaagcacgttcat
gi|6 : gtcatttgcctagtTA---CATAAATTATGC-ATGATTCTTCAGATGATAGATCAAATTTCTA-AACTATTATTTCAATTCAAA-TTTTATTCTTC-TTTAGA-TGCATTTTCT--A--ACCACCTGAATATGGGCTATTCGG-AAC-T-GGTAAAA----TCGATG-C--AAG--GCACCAA-AATT-AG--------CGTCTTTTTC--GTCATCATAGAAACTCTAG-ATGGTGACTT-ATAC-AAGAA-CTATTTTGTGAGATATTT---AAAGTAAAAAGTTCAAATTAATTGTTGGAA-T-GGAAAAATGATTTAAAACACGTAaattgt
gi|7 : CCGAAATAGTTTTCCAGTTCCAA---ATAATTT-------AAG--TTT---AATG-AGT-GAA------ATCTTCCCGTACTAAATTCGTAATTTAATAGAAATAATATATAC------A-TATATGTATAATCAATGTGATA-AT-AACTT-TAATCCTTCAT-TGTTA--------TTTCCAAATT-----------TTTAC---------TGAT-CGT-ATGGA-TG-TTGTTGG----CTCGTTGAAAAGTGAGGGG-CTTAAA--------AAAAATCCG-C-
gi|8 : cagtgatctctctagttccaaaaAAAGTCCG-CCATGTTTGTTTTAT--G-AAAATATCGGAAAACCTCCTCATTTTC---------AATA-----TAT------------------CTA---CATAAATTATGC-ATGATGAATCAGATGAAAGATCGAATTTCTA-AACTTTTAATTCAATCCAAA-TTTTATTCTTC-TTTAAAT-GCGTTTTTTTTA--CCCCTGTGAATAGGGGATATTCGG-AA----------G----TTA-T-----AAGGCACA--AA-TATAGG---------CGTCTTTGTC--GTTCTCATAGAAtat
gi|9 : tcttgCTATTCGGAAC----TAGGCAAA
gi|9 : aTCCGAA-TAGTTTTCCAGTTACGA---ATAATTT-------AAG--TTC---AATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT------AAA---CA-AAAC------A-T--------------CACG----AT-AACTT-TAATCCTTCCTCTCTTAGATAATTTTTTTTTTATTTTT---GGTAATTTAC---------TGAG-AGC-ATGAA-TT-TTGTTAC----TTCCTTAAAAAGAGGGAGTGCTTG-A-TTTGC--AAAAATCCGAC-ATGttttccagttacgaataatttaagttcaatgagtgaaaactttatcttctcgtgcgaaattattaaacaaaacatcacgataactttaatccttcctctcttagataattttttttttatttttggtaatttactgagagcatgaattttgttacttccttaaaaagagggagtgcttgatttgcaaaaatccgacatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGAGATAGCGACTGTAAAGTGGTTCGAACTCGGTTTTCTTTATTTTCTCATATACTGATAATTCAAGTGATTTAGCCAGATCTACATGTACATCTACTTTTAGTCACGTCACTTTCAG
Alignments
lowQualScore : 1111111 4444444444444 33333333333333333333333 1 11111 222222222 1111 11 444444444444 111 11 1 1 11 11111 11111 33333333 111 22 22 11111 8888888888888888888888888888888888888888888888888888 111 111 111 1 1 111
lowQualScore : 4 5 0 777 0 3333333 55 777 4 4 4 1 9999 3333333333333 5 00000000000000000000000 3 5 0 5 0 1 0 99 5 77 3 44 00000 000000000 5 5 5 5 0000 1 44 333333333333 444 4 66 0 5 1 0 33 55 44444 33333 33333333 444 0 55 5 1 8 6 8 3 8 3 11 0 33333 0 8 3 6 2222222222222222222222222222222222222222222222222222 000 1 888 6 77 9 333 1 111 1 22 0 5 8 0 77 5 3 111 7 7 7 2
lowQualScore : . . . ... . ....... .. ... . . . . .... ............. . ....................... . . . . . . . .. . .. . .. ..... ......... . . . . .... . .. ............ ... . .. . . . . .. .. ..... ..... ........ ... . .. . . . . . . . . .. . ..... . . . . .................................................... ... . ... . .. . ... . ... . .. . . . . .. . . ... . . . .
lowQualScore : 0 5 7 000 4 0000000 55 000 0 0 8 8 4444 7777777777777 0 88888888888888888888888 1 0 0 0 4 7 7 66 1 99 9 22 11111 000000000 0 0 0 0 6666 0 33 888888888888 222 5 00 0 0 4 6 88 00 00000 66666 00000000 000 8 66 6 4 0 4 0 8 0 2 00 6 00000 8 8 2 7 5555555555555555555555555555555555555555555555555555 222 0 000 7 77 8 555 0 777 7 00 7 7 6 4 22 6 2 000 3 3 3 5
consensus : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTAAA-TTTGCCGAAAAATCCG-C-ATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
Reference ( family-904 ) : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTGAA-TTTGCCGAAAAATCCG-C-ATGTTTGNTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGGCAAA
gi|1 : GTTCGAA-TAGTT--CCAGT-CCGA---ATAATT--------AAG--TTT---AATGCAGTTAAAAACTTTATCTTTTCGTGCGAAATT----ATTTGAA-----AT--TAAA-AC------A-T--------------TATGATA-AT-AACTT-TAATCTTTCATCTGCTAAATAA--TTCTTCAAATTTTT---TGTTATTTAC---------TGAG-CGCGATGAA-TT-TTGATAG----CTCCTTAAAAAGAACGAGT-TTTAAATTTTGCCGAAAAATCCG-C-ATGTTTGGTTTATTTG-AAAAAATCGGAAAGACTCCTCA--TTTCAAGACGTGAAGAAAA-GTATGAATGGTTCT-ATAGA--CTA---CATAAACTATGGGATGGT--CTCAGAGGAAAGATCAAGTCTCTATATTTTTTATTTCAATTCAAATTTTTATTCTTCTTTTAGATTGCATTTTCT--A--CCCCTTTGAATATGGGCTATTCGGAAAC-T-GGTAAAA----TCGATGGC--AAGGCTCACCAA-AATGGGG--------CGTCTTTTTTCGGTCATCATAGAAACTCTAGAATGGTGACTTAGTACAAAGAA-C-ATTTTGTGAGATATTTAAAAAAGTAAAAAGTTCAAATTAATTGTTGGAATTGGGAAAAATGATTTCAAACACGTAAACGTAGAAGATG-A-TATTCCAGTCTAAAAATAACCTATTCGGAACT-TAGCCAAA
gi|10 : TCCGAA-TCGTTTTGCAGTTTCAA---ATGATTTTGTTTTTAAT--TTT---GACG-AGT-GAAAACTGTATCTTCTCGTACAAAATT----GTCC--------AT--TAAT-ACATTGATA-T--------------TATGATA-ATAAACTT-TATTCATTCATCTATTTGATAA--TTCTTCAA--TTTT---CATAATTTTCTTATTTATATGAT-CGC-ATGAC-TT-TTGTTAG----CTCCTTGAAAA
gi|11 : gtggttttcctactAAAGTTTAAATTGATT-TTAGTG-TGT--AAAATGATTCCAAACACA-AGATGTA-GAGATA-A-
gi|12 : TCCGAA-TCATTTTCCAGTTTCAACTTAT-ATTT-------AAG--TT-----ATG-ATT-GAGA-----ATCTTCTCG-AAGAAATT----GTTG-AA---------TAAA-AG------AGT--------------TATGATATAA-AACTT-TA-----TCACATGTT---T-A--CTCTTTATATATTTGTACATAA---------------GAGTTGC-ATTAA-TTATTATTAGATTACCCCTTcgagtgtatagtggttcgaactcagttttctttattttttcgcaaactgataatttaagtgatctaacccgatttgttctcctacatctaccggtaaatttcagaattcgaagtaacaaacacgttctta
gi|14 : acagtggtctctccaatAGTATAGAGTTCAAATACATTGGTGGTA-TGGGGAAAATGCTTTCAAACATGTA-ACA-AAAAGATG-A-TATCCCTGCCTAAAAATACCCCATTCGGA--TATAGGCAAA
gi|15 : TCCGAA-TAGTTTGCCAGTTCCGA---ATGATTT-------AAG--TTT---AAAG-AGT-GAAAAC-TTATCTTCTCGTACGAAATT----ATT--AA-----AT--t
gi|16 : tcatttgccaagtACACTTTT---CATATTTTAC---------TCGG-CGC-GTGGA-TT-TTGCTAG----CTCCCTAAAAAGAGGGAGT-GTTaa
gi|17 : TCCGAA-T-GTTGGCCAGTTCCCA---ATACTTT-------GGGGATTT---AA-G-AGT-t
gi|18 : atccatttgaccagtTAG-ATGATGACTT-TTACAA-GAA-CTATTTGGTGAGATATTT---AAAGTAAAAAGTTCAAATca
gi|2 : TCTGAA-TCGTTTTCCAGTTCCGA---ATAAGTT-------AAG--TTT---GATG-AGT-AAAATTTTTATCTTCTCGTACAAAATT----TTTC-AA---------TAAA-TC------A-T--------------TATGATA-ATAAAATT-TAATCCTTCATCTGTAGAATAA--TTCTACAT-TTTTT---CATAATTTAC---------TGGG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGATGGAAT-GCTCAA-TT--------AATT-----------------TCTG-AAAAAATCGGGAAGCCACCTAA-TTTTCAAGATGAAAAT-AAA-GTATCTGTTGTTTT-A-AAAATCTA---ACTAAGTTATGCT-TGATTCTTAAGACGAAAGATCAAGTCTCAA-AACTTTTATTTCAGT------TTT-----------------------TCT--A--TCCCTGTG-ATA---------CGG-AAC-A-GA-G-------------------GGCGCGCCGG-GG-GGGGAGAGA---CGTCATTTTC----CGTCATAAAA-----------GTGACCT-TTGTAAAT-A-TTATTTTGTATGATATCT---AAAAT--AAAGTTCAAATATATTGTTAGTA-T-GGAAAAATGGTTTCAAACAAGTAA--GGAGGAAATATATTATCCCAGTCT-AAAATACCCTATTCGGAACTATAt
gi|3 : taggttttcctagtTCCAAA-TCATTTTCCAGTTCCGA---ATGATTT-------AAG--TTTCATAATA-AGT-GAAAACTTTATCTTCTGGTACGAAATT----GTTC-AG---------TAAA-AC------A-T-----------------AATA----AACTT-TAATtagga
gi|3 : agtggttttcctagtAATTGGGAAGCCCCCTCATTTT-CAAGACGTTTATAAAGCGTATGGATTGTTTTTG-AAG--TTAAACCA-AAATCATGCG-TGATTCTTCAGATGCAAAATCAAATTTCAA-AACGTTTATTTCAATCGAAA-GTCCATTCTCC-TTTATA-TGCATTGTCC--AACCCCTTGTAAACAGAGGTTATTCGG-AAC-TGGG-GAAA----TCG-TTGT--AAAGCACAACAATAA----G--------TGTCTTTTTC--GTCGTCATA-AAATTATAA-ATGGTGACCT-TTAC--AGAATTTATTTTGTGTGACATTT---AAAGTAAAAA-TTCAAATATACTGTTGGTA-T-GGAAAAATGGTTTCAAACAattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatggattgtttttgaagttaaaccaaaatcatgcgtgattcttcagatgcaaaatcaaatttcaaaacgtttatttcaatcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|4 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttTTCGA-CACGT-GG-GAAGAACCTCG-T--TGGAGGGCG-ACAAACAATTGGGAATGGTTCTGTCTTTTTC--ATCGTCATAGAAGAACTAG-ATGG-AAATC-CTAGGAAGAA-A-ATATTGTGTGGT-TTT---TAAGTTAAAAGTTTAATTTTAGTTTTAGTG-T--GACAAATGGTTTCAAACACAT-GACGTA-GAGAT
gi|5 : TCAGAA-TAGTTGTCCAGTTCCGA---ATAATTT-------AAG--TTT---GATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT--AA-----A---TAAA-AC------A-T--------------TACGATA-AT-AAATTGTTATTTACCATCTATTAAATTA--CTCT--ACACTTTT---CATAATTTAC---------TGAG-CAC-ATGGATTT-TTGTAAG----CTCCATAAAAA---GGAGTGCTT-CA-TTTCCCG-AAAATCCGCC-ATGTTTGTTTTA--TGAAAAAAAGTGGAAAG-CCCCTCATTTTT-AAGACGTAAAT-AAA-GTATAAACAGTTTagcgactgtaaagtggttcgaactcagttttctttattttctcataaactgataattcaagtgatttagcccgatctacatctacttttagtcacgtcactttcagaatgtggagcaacaagcacgttcat
gi|6 : gtcatttgcctagtTA---CATAAATTATGC-ATGATTCTTCAGATGATAGATCAAATTTCTA-AACTATTATTTCAATTCAAA-TTTTATTCTTC-TTTAGA-TGCATTTTCT--A--ACCACCTGAATATGGGCTATTCGG-AAC-T-GGTAAAA----TCGATG-C--AAG--GCACCAA-AATT-AG--------CGTCTTTTTC--GTCATCATAGAAACTCTAG-ATGGTGACTT-ATAC-AAGAA-CTATTTTGTGAGATATTT---AAAGTAAAAAGTTCAAATTAATTGTTGGAA-T-GGAAAAATGATTTAAAACACGTAaattgt
gi|7 : CCGAAATAGTTTTCCAGTTCCAA---ATAATTT-------AAG--TTT---AATG-AGT-GAAA------TCTTCCCGTACTAAATTCGTAATTT-AATAGAAATAATATATAC------A-TATATGTATAATCAATGTGATA-AT-AACTT-TAATCCTTCAT-TGTTA--------TTTCCAAATT-----------TTTAC---------TGAT-CGT-ATGGA-TG-TTGTTGG----CTCGTTGAAAAGTGAGGGG-CTTAAA--------AAAAATCCG-C-
gi|8 : cagtgatctctctagttccaaaaAAAGTCCG-CCATGTTTGTTTTAT--G-AAAATATCGGAAAACCTCCTCATTTTC---------AATA-----TAT------------------CTA---CATAAATTATGC-ATGATGAATCAGATGAAAGATCGAATTTCTA-AACTTTTAATTCAATCCAAA-TTTTATTCTTC-TTTAAAT-GCGTTTTTTTTA--CCCCTGTGAATAGGGGATATTCGG-AA----------G----TTA-T-----AAGGCACA--AA-TATAGG---------CGTCTTTGTC--GTTCTCATAGAAtat
gi|9 : tcttgTCCGAA-TAGTTTTCCAGTTACGA---ATAATTT-------AAG--TTC---AATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT--AA-----A---CAAA-AC------A-T--------------CACG----AT-AACTT-TAATCCTTCCTCTCTTAGATAATTTTTTTTTTATTTTT---GGTAATTTAC---------TGAG-AGC-ATGAA-TT-TTGTTAC----TTCCTTAAAAAGAGGGAGTGCTTG-A-TTTGC--AAAAATCCGAC-ATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGAGATAGCGACTGTAAAGTGGTTCGAACTCGGTTTTCTTTATTTTCTCATATACTGATAATTCAAGTGATTTAGCCAGATCTACATGTACATCTACTTTTAGTCACGTCACTTTCAG
Alignments
lowQualScore : 1111111 4444444444444 33333333333333333333333 1 11111 222222222 1111 11 444444444444 111 11 1 1 11 11111 11111 33333333 111 22 22 11111 8888888888888888888888888888888888888888888888888888 111 111 111 1 1 111
lowQualScore : 4 5 0 777 0 3333333 55 777 4 4 4 1 9999 3333333333333 5 00000000000000000000000 3 5 0 5 0 1 0 99 5 77 3 44 00000 000000000 5 5 5 5 0000 1 44 111111111111 444 3 66 0 5 1 0 33 55 44444 33333 33333333 444 0 55 5 1 8 6 8 3 8 3 11 0 33333 0 8 3 6 2222222222222222222222222222222222222222222222222222 000 1 888 6 77 9 333 1 111 1 22 0 5 8 0 77 5 3 111 7 7 7 1
lowQualScore : . . . ... . ....... .. ... . . . . .... ............. . ....................... . . . . . . . .. . .. . .. ..... ......... . . . . .... . .. ............ ... . .. . . . . .. .. ..... ..... ........ ... . .. . . . . . . . . .. . ..... . . . . .................................................... ... . ... . .. . ... . ... . .. . . . . .. . . ... . . . .
lowQualScore : 0 5 7 000 4 0000000 55 000 0 0 8 8 4444 7777777777777 0 88888888888888888888888 1 0 0 0 4 7 7 66 1 99 9 22 11111 000000000 0 0 0 0 6666 0 33 000000000000 222 0 00 0 0 4 6 88 00 00000 66666 00000000 000 8 66 6 4 0 4 0 8 0 2 00 6 00000 8 8 2 7 5555555555555555555555555555555555555555555555555555 222 0 000 7 77 8 555 0 777 7 00 7 7 6 4 22 6 2 000 3 3 3 0
consensus : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTAAA-TTTGCCGAAAAATCCG-C-ATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
Reference ( family-904 ) : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTAAA-TTTGCCGAAAAATCCG-C-ATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
gi|1 : GTTCGAA-TAGTT--CCAGT-CCGA---ATAATT--------AAG--TTT---AATGCAGTTAAAAACTTTATCTTTTCGTGCGAAATT----ATTTGAA-----AT--TAAA-AC------A-T--------------TATGATA-AT-AACTT-TAATCTTTCATCTGCTAAATAA--TTCTTCAAATTTTT---TGTTATTTAC---------TGAG-CGCGATGAA-TT-TTGATAG----CTCCTTAAAAAGAACGAGT-TTTAAATTTTGCCGAAAAATCCG-C-ATGTTTGGTTTATTTG-AAAAAATCGGAAAGACTCCTCA--TTTCAAGACGTGAAGAAAA-GTATGAATGGTTCT-ATAGA--CTA---CATAAACTATGGGATGGT--CTCAGAGGAAAGATCAAGTCTCTATATTTTTTATTTCAATTCAAATTTTTATTCTTCTTTTAGATTGCATTTTCT--A--CCCCTTTGAATATGGGCTATTCGGAAAC-T-GGTAAAA----TCGATGGC--AAGGCTCACCAA-AATGGGG--------CGTCTTTTTTCGGTCATCATAGAAACTCTAGAATGGTGACTTAGTACAAAGAA-C-ATTTTGTGAGATATTTAAAAAAGTAAAAAGTTCAAATTAATTGTTGGAATTGGGAAAAATGATTTCAAACACGTAAACGTAGAAGATG-A-TATTCCAGTCTAAAAATAACCTATTCGGAACT-TAGCCAAA
gi|10 : TCCGAA-TCGTTTTGCAGTTTCAA---ATGATTTTGTTTTTAAT--TTT---GACG-AGT-GAAAACTGTATCTTCTCGTACAAAATT----GTCC--------AT--TAAT-ACATTGATA-T--------------TATGATA-ATAAACTT-TATTCATTCATCTATTTGATAA--TTCTTCAA--TTTT---CATAATTTTCTTATTTATATGAT-CGC-ATGAC-TT-TTGTTAG----CTCCTTGAAAA
gi|11 : gtggttttcctactAAAGTTTAAATTGATT-TTAGTG-TGT--AAAATGATTCCAAACACA-AGATGTA-GAGATA-A-
gi|12 : TCCGAA-TCATTTTCCAGTTTCAACTTAT-ATTT-------AAG--TT-----ATG-ATT-GAGA-----ATCTTCTCG-AAGAAATT----GTTG-AA---------TAAA-AG------AGT--------------TATGATATAA-AACTT-TA-----TCACATGTT---T-A--CTCTTTATATATTTGTACATAA---------------GAGTTGC-ATTAA-TTATTATTAGATTACCCCTTcgagtgtatagtggttcgaactcagttttctttattttttcgcaaactgataatttaagtgatctaacccgatttgttctcctacatctaccggtaaatttcagaattcgaagtaacaaacacgttctta
gi|14 : acagtggtctctccaatAGTATAGAGTTCAAATACATTGGTGGTA-TGGGGAAAATGCTTTCAAACATGTA-ACA-AAAAGATG-A-TATCCCTGCCTAAAAATACCCCATTCGGA--TATAGGCAAA
gi|15 : TCCGAA-TAGTTTGCCAGTTCCGA---ATGATTT-------AAG--TTT---AAAG-AGT-GAAAAC-TTATCTTCTCGTACGAAATT----ATT--AA-----AT--t
gi|16 : tcatttgccaagtACACTTTT---CATATTTTAC---------TCGG-CGC-GTGGA-TT-TTGCTAG----CTCCCTAAAAAGAGGGAGT-GTTaa
gi|17 : TCCGAA-T-GTTGGCCAGTTCCCA---ATACTTT-------GGGGATTT---AA-G-AGT-t
gi|18 : atccatttgaccagtTAG-ATGATGACTT-TTACAA-GAA-CTATTTGGTGAGATATTT---AAAGTAAAAAGTTCAAATca
gi|2 : TCTGAA-TCGTTTTCCAGTTCCGA---ATAAGTT-------AAG--TTT---GATG-AGT-AAAATTTTTATCTTCTCGTACAAAATT----TTTC-AA---------TAAA-TC------A-T--------------TATGATA-ATAAAATT-TAATCCTTCATCTGTAGAATAA--TTCTACAT-TTTTT---CATAATTTAC---------TGGG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGATGGAAT-GCTCAA-TT--------AATT-----------------TCTG-AAAAAATCGGGAAGCCACCTAA-TTTTCAAGATGAAAAT-AAA-GTATCTGTTGTTTT-A-AAAATCTA---ACTAAGTTATGCT-TGATTCTTAAGACGAAAGATCAAGTCTCAA-AACTTTTATTTCAGT------TTT-----------------------TCT--A--TCCCTGTG-ATA---------CGG-AAC-A-GA-G-------------------GGCGCGCCGG-GG-GGGGAGAGA---CGTCATTTTC----CGTCATAAAA-----------GTGACCT-TTGTAAAT-A-TTATTTTGTATGATATCT---AAAAT--AAAGTTCAAATATATTGTTAGTA-T-GGAAAAATGGTTTCAAACAAGTAA--GGAGGAAATATATTATCCCAGTCT-AAAATACCCTATTCGGAACTATAt
gi|3 : taggttttcctagtTCCAAA-TCATTTTCCAGTTCCGA---ATGATTT-------AAG--TTTCATAATA-AGT-GAAAACTTTATCTTCTGGTACGAAATT----GTTC-AG---------TAAA-AC------A-T-----------------AATA----AACTT-TAATtagga
gi|3 : agtggttttcctagtAATTGGGAAGCCCCCTCATTTT-CAAGACGTTTATAAAGCGTATGGATTGTTTTTG-AAG--TTAAACCA-AAATCATGCG-TGATTCTTCAGATGCAAAATCAAATTTCAA-AACGTTTATTTCAATCGAAA-GTCCATTCTCC-TTTATA-TGCATTGTCC--AACCCCTTGTAAACAGAGGTTATTCGG-AAC-TGGG-GAAA----TCG-TTGT--AAAGCACAACAATAA----G--------TGTCTTTTTC--GTCGTCATA-AAATTATAA-ATGGTGACCT-TTAC--AGAATTTATTTTGTGTGACATTT---AAAGTAAAAA-TTCAAATATACTGTTGGTA-T-GGAAAAATGGTTTCAAACAattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatggattgtttttgaagttaaaccaaaatcatgcgtgattcttcagatgcaaaatcaaatttcaaaacgtttatttcaatcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|4 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttTTCGA-CACGT-GG-GAAGAACCTCG-T--TGGAGGGCG-ACAAACAATTGGGAATGGTTCTGTCTTTTTC--ATCGTCATAGAAGAACTAG-ATGG-AAATC-CTAGGAAGAA-A-ATATTGTGTGGT-TTT---TAAGTTAAAAGTTTAATTTTAGTTTTAGTG-T--GACAAATGGTTTCAAACACAT-GACGTA-GAGAT
gi|5 : TCAGAA-TAGTTGTCCAGTTCCGA---ATAATTT-------AAG--TTT---GATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT--AA-----A---TAAA-AC------A-T--------------TACGATA-AT-AAATTGTTATTTACCATCTATTAAATTA--CTCT--ACACTTTT---CATAATTTAC---------TGAG-CAC-ATGGATTT-TTGTAAG----CTCCATAAAAA---GGAGTGCTT-CA-TTTCCCG-AAAATCCGCC-ATGTTTGTTTTA--TGAAAAAAAGTGGAAAG-CCCCTCATTTTT-AAGACGTAAAT-AAA-GTATAAACAGTTTagcgactgtaaagtggttcgaactcagttttctttattttctcataaactgataattcaagtgatttagcccgatctacatctacttttagtcacgtcactttcagaatgtggagcaacaagcacgttcat
gi|6 : gtcatttgcctagtTA---CATAAATTATGC-ATGATTCTTCAGATGATAGATCAAATTTCTA-AACTATTATTTCAATTCAAA-TTTTATTCTTC-TTTAGA-TGCATTTTCT--A--ACCACCTGAATATGGGCTATTCGG-AAC-T-GGTAAAA----TCGATG-C--AAG--GCACCAA-AATT-AG--------CGTCTTTTTC--GTCATCATAGAAACTCTAG-ATGGTGACTT-ATAC-AAGAA-CTATTTTGTGAGATATTT---AAAGTAAAAAGTTCAAATTAATTGTTGGAA-T-GGAAAAATGATTTAAAACACGTAaattgt
gi|7 : CCGAAATAGTTTTCCAGTTCCAA---ATAATTT-------AAG--TTT---AATG-AGT-GAAA------TCTTCCCGTACTAAATTCGTAATTT-AATAGAAATAATATATAC------A-TATATGTATAATCAATGTGATA-AT-AACTT-TAATCCTTCAT-TGTTA--------TTTCCAAATT-----------TTTAC---------TGAT-CGT-ATGGA-TG-TTGTTGG----CTCGTTGAAAAGTGAGGGG-CTTAAA--------AAAAATCCG-C-
gi|8 : cagtgatctctctagttccaaaaAAAGTCCG-CCATGTTTGTTTTAT--G-AAAATATCGGAAAACCTCCTCATTTTC---------AATA-----TAT------------------CTA---CATAAATTATGC-ATGATGAATCAGATGAAAGATCGAATTTCTA-AACTTTTAATTCAATCCAAA-TTTTATTCTTC-TTTAAAT-GCGTTTTTTTTA--CCCCTGTGAATAGGGGATATTCGG-AA----------G----TTA-T-----AAGGCACA--AA-TATAGG---------CGTCTTTGTC--GTTCTCATAGAAtat
gi|9 : tcttgTCCGAA-TAGTTTTCCAGTTACGA---ATAATTT-------AAG--TTC---AATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----ATT--AA-----A---CAAA-AC------A-T--------------CACG----AT-AACTT-TAATCCTTCCTCTCTTAGATAATTTTTTTTTTATTTTT---GGTAATTTAC---------TGAG-AGC-ATGAA-TT-TTGTTAC----TTCCTTAAAAAGAGGGAGTGCTT-GA-TTTGC--AAAAATCCGAC-ATG
blockSeqs : A C CTT TGTTTTT GA CAT . . A T CGTA TAATAGAAATAA T ATATATGTATAATCAA T T A G A TG A TT T TA GTACA TTATTTATA T . T A ATTA G GC CATTTCCCG CC T TC A C A T TC AA AAAGC CTGTT AAAAAT AAC T T A . C . C . T T AAC G T . GTGGGAAGAACCTCGTTGGAGGGCGACAAACAATTGGGAATGGTTC G A ATT . T A TTT A . A TG . G GA T A TAT A A A G
blockSeqs : . C . . . . . . A T . AAAT . ATTGATAT T . A . C GA A . T CA CA . . . . . . T GC GATTTGCA CC T T . C C T C TT AAA GGATT TGAAG . G T A . T . T . G T TTA T C . TGGGGAAATCGTTGTAAAGCACAACAATAAG A G GAA . T A CT T . A AC . G GA G G A . . A
blockSeqs : . A . . . . . . T T . CAT . AGT T . . . T AA T . A CA CA . . . . . . G G CAATT AC . . . C C T T TA AAA AAACA . . A T T . C . T . A T A G A . TGGTAAAATCGATGCAAGGCACCAAAATTAG G G ACT . T G TT T . A AT . . A T . A
blockSeqs : . C . . . . . . A T . GAA . AT C . . . C AG A . C AA CA . . . . . . G G AAAA C . T . C . A . . A G T . . . . . . . A . . . AGAGGGCGCGCCGGGGGGGGAGAGA G G . . C . CT T . T AT . . A . .
blockSeqs : . C . . . . . . A T . CAA . AT T . . . C A . . T TA CA . . . . . . . C . . GTTATAAGGCACAAATATAGG . . . A . A A . A TT . .
blockSeqs : . A . . . . . . A . . CAG . AT C . . . . . . . . A GG . . . . . . . TA . .
blockSeqs : . A . . . . . . . . . AAA . AT . . . . T . . . . . . .
blockSeqs : . A . . . . . . . . . AAA
blockSeqs : . . . . . . . .
blockSeqCons : NAA********** CATTG******* CC* C* AAA** A* T* G** T* CT* ***
originalCons : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTC-AA-----AT--TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTAAA-TTTGCCGAAAAATCCG-C-ATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTTCAAGACGTAAATAAAA-GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCGATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGATTGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
finalCons : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----ATTNAA----------TAAA-AC------A-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTCATTG-------AAAATCCGCC-ATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTC-AAGACGTAAATAAA--GTATGAATNGTTTT-A-AAA--CTA---CATAAATTATGCA-TGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGAT-GCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTCG--TCGTCATAGAAACTCTAG-ATGGTGACTTT-TACAAAGAACT-ATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGAGATAGCGACTGTAAAGTGGTTCGAACTCGGTTTTCTTTATTTTCTCATATACTGATAATTCAAGTGATTTAGCCAGATCTACATGTACATCTACTTTTAGTCACGTCACTTTCAG
Alignments
lowQualScore : 1111111 33333333333333333333333333333 1 11111 222222222 1111 11 55555555555555 11 1 111111 11 11 33333333 111 11111 8888888888888888888888888888888888888888888888888888 111 111 111 1 1 111
lowQualScore : 4 5 0 777 0 3333333 55 777 4 4 2 1 9999 777 1 777 66666666666666666666666666666 3 5 0 5 0 1 0 99 5 77 3 44 00000 000000000 5 5 5 5 0000 1 44 5 00000000000000 6 3 3 66 0 5 1 0 000000 11 22 8 33333333 444 0 8 5 1 8 6 88 8 3 8 33333 0 8 3 6 2222222222222222222222222222222222222222222222222222 000 1 888 6 88 9 333 1 111 1 22 0 5 8 0 77 5 3 111 7 7 7 1
lowQualScore : . . . ... . ....... .. ... . . . . .... ... . ... ............................. . . . . . . . .. . .. . .. ..... ......... . . . . .... . .. . .............. . . . .. . . . . ...... .. .. . ........ ... . . . . . . .. . . . ..... . . . . .................................................... ... . ... . .. . ... . ... . .. . . . . .. . . ... . . . .
lowQualScore : 0 5 7 000 4 0000000 55 000 0 0 0 8 4444 888 0 888 44444444444444444444444444444 1 0 0 0 4 7 7 66 1 99 9 22 11111 000000000 0 0 0 0 6666 0 33 0 00000000000000 7 2 0 00 0 0 4 8 444444 00 22 8 00000000 000 8 0 6 4 0 4 66 0 2 0 00000 8 8 2 7 5555555555555555555555555555555555555555555555555555 222 0 000 7 55 8 555 0 777 7 00 7 7 6 4 22 6 2 000 3 3 3 0
consensus : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----AT---TNAA---TAAA----------ACA-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTNA---TT----G----AAAATCCGCCATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTCAAGACGTAAAT-AAAG--TATGAATNGTTTT-A-AAA--CTA---CATAAATTAT-GCATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGA-TGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-NTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
Reference ( family-904 ) : GTCCGAA-TAGTTTTCCAGTTCCGA---ATAATTT-------AAG--TTT---AATG-AGT-GAAAACTTTATCTTCTCGTACGAAATT----AT---TNAA---TAAA----------ACA-T--------------TACGATA-AT-AACTT-TAATCCTTCATCTGTTAAATAA--TTCTTCANATTTTT---CGTAATTTAC---------TGAG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGAGGGAGT-CTTCA---TT----G----AAAATCCGCCATGTTTGTTTTATCTG-AAAAAATCGGAAAGCCCCCTCATTTTCAAGACGTAAAT-AAAG--TATGAATNGTTTT-A-AAA--CTA---CATAAATTAT-GCATGATTCTTCAGATGAAAGATCAAATTTCTA-AACTTTTATTTCAATCCAAA-TTTTATTCTTC-TTTAGA-TGCATTTTCT--A--CCCCTGTGAATANGGGCTATTCGG-AAC-T-GG-GAAA----TCG-T--C--AAGGCGCACCAA-AATNGGG--------CGTCTTTTTC--GTCGTCATAGAAACTCTAG-ATGGTGACTT-TTACAAAGAA-CTATTTTGTGNGATATTT---AAAGTAAAAAGTTCAAATNNATTGTTGGTA-TGGGAAAAATGGTTTCAAACACGTAGACGTAGGAGATG-A-TATCCCAGTCTAAAAATACCCTATTCGGAACTATAGNCAAA
gi|1 : GTTCGAA-TAGTT--CCAGT-CCGA---ATAATT--------AAG--TTT---AATGCAGTTAAAAACTTTATCTTTTCGTGCGAAATT----AT---TTGAAATTAAA----------ACA-T--------------TATGATA-AT-AACTT-TAATCTTTCATCTGCTAAATAA--TTCTTCAAATTTTT---TGTTATTTAC---------TGAG-CGCGATGAA-TT-TTGATAG----CTCCTTAAAAAGAACGAGT-TTTAAATTTT----GCCGAAAAATCCG-CATGTTTGGTTTATTTG-AAAAAATCGGAAAGACTCCTCA-TTTCAAGACGTGAAGAAAAG--TATGAATGGTTCT-ATAGA--CTA---CATAAACTATGGGATGGT--CTCAGAGGAAAGATCAAGTCTCTATATTTTTTATTTCAATTCAAATTTTTATTCTTCTTTTAGATTGCATTTTCT--A--CCCCTTTGAATATGGGCTATTCGGAAAC-T-GGTAAAA----TCGATGGC--AAGGCTCACCAA-AATGGGG--------CGTCTTTTTTCGGTCATCATAGAAACTCTAGAATGGTGACTTAGTACAAAGAA-C-ATTTTGTGAGATATTTAAAAAAGTAAAAAGTTCAAATTAATTGTTGGAATTGGGAAAAATGATTTCAAACACGTAAACGTAGAAGATG-A-TATTCCAGTCTAAAAATAACCTATTCGGAACT-TAGCCAAA
gi|10 : TCCGAA-TCGTTTTGCAGTTTCAA---ATGATTTTGTTTTTAAT--TTT---GACG-AGT-GAAAACTGTATCTTCTCGTACAAAATT----GTCCATTAA---TACATTG-------ATA-T--------------TATGATA-ATAAACTT-TATTCATTCATCTATTTGATAA--TTCTTCAA--TTTT---CATAATTTTCTTATTTATATGAT-CGC-ATGAC-TT-TTGTTAG----CTCCTTGAAAA
gi|11 : gtggttttcctactAAAGTTTAAATTGATT-TTAGTG-TGT--AAAATGATTCCAAACACA-AGATGTA-GAGATA-A-
gi|12 : TCCGAA-TCATTTTCCAGTTTCAACTTAT-ATTT-------AAG--TT-----ATG-ATT-GAGA-----ATCTTCTCG-AAGAAATT----GT---TGAA---TAAA----------AGAGT--------------TATGATATAA-AACTT-TA-----TCACATGTT---T-A--CTCTTTATATATTTGTACATAA---------------GAGTTGC-ATTAA-TTATTATTAGATTACCCCTTcgagtgtatagtggttcgaactcagttttctttattttttcgcaaactgataatttaagtgatctaacccgatttgttctcctacatctaccggtaaatttcagaattcgaagtaacaaacacgttctta
gi|14 : acagtggtctctccaatAGTATAGAGTTCAAATACATTGGTGGTA-TGGGGAAAATGCTTTCAAACATGTA-ACA-AAAAGATG-A-TATCCCTGCCTAAAAATACCCCATTCGGA--TATAGGCAAA
gi|15 : TCCGAA-TAGTTTGCCAGTTCCGA---ATGATTT-------AAG--TTT---AAAG-AGT-GAAAAC-TTATCTTCTCGTACGAAATT----AT---TAAA---TAAt
gi|16 : tcatttgccaagtACACTTTT---CATATTTTAC---------TCGG-CGC-GTGGA-TT-TTGCTAG----CTCCCTAAAAAGAGGGAGT-GTT
gi|17 : TCCGAA-T-GTTGGCCAGTTCCCA---ATACTTT-------GGGGATTT---AA-G-AGT-t
gi|18 : atccatttgaccagtTAG-ATGATGACTT-TTACAA-GAA-CTATTTGGTGAGATATTT---AAAGTAAAAAGTTCAAATca
gi|2 : TCTGAA-TCGTTTTCCAGTTCCGA---ATAAGTT-------AAG--TTT---GATG-AGT-AAAATTTTTATCTTCTCGTACAAAATT----TT---TCAA---TAAA----------TCA-T--------------TATGATA-ATAAAATT-TAATCCTTCATCTGTAGAATAA--TTCTACAT-TTTTT---CATAATTTAC---------TGGG-CGC-ATGAA-TT-TTGTTAG----CTCCTTGAAAAGATGGAAT-GCTCA---AT----T----AA-----------TT-------TCTG-AAAAAATCGGGAAGCCACCTAATTTTCAAGATGAAAAT-AAAG--TATCTGTTGTTTT-A-AAAATCTA---ACTAAGTTAT-GCTTGATTCTTAAGACGAAAGATCAAGTCTCAA-AACTTTTATTTCAGT-----------------------------TTTTCT--A--TCCCTGTG-ATA---------CGG-AAC-A-GA-G-------------------GGCGCGCCGG-GG-GGGGAGAGA---CGTCATTTTC----CGTCATAAAA-----------GTGACCT-TTGTAAAT-A-TTATTTTGTATGATATCT---AAAAT--AAAGTTCAAATATATTGTTAGTA-T-GGAAAAATGGTTTCAAACAAGTAA--GGAGGAAATATATTATCCCAGTCT-AAAATACCCTATTCGGAACTATAt
gi|3 : taggttttcctagtTCCAAA-TCATTTTCCAGTTCCGA---ATGATTT-------AAG--TTTCATAATA-AGT-GAAAACTTTATCTTCTGGTACGAAATT----GT---TCAG---TAAA----------ACA-T-----------------AATA----AACTT-TAATtagga
gi|3 : agtggttttcctagtAATTGGGAAGCCCCCTCATTTTCAAGACGTTTAT-AAAGCGTATGGATTGTTTTTG-AAG--TTAAACCA-AAATCAT-GCGTGATTCTTCAGATGCAAAATCAAATTTCAA-AACGTTTATTTCAATCGAAA-GTCCATTCTCC-TTTATA-TGCATTGTCC--AACCCCTTGTAAACAGAGGTTATTCGG-AAC-TGGG-GAAA----TCG-TTGT--AAAGCACAACAATAA----G--------TGTCTTTTTC--GTCGTCATA-AAATTATAA-ATGGTGACCT-TTAC--AGAATTTATTTTGTGTGACATTT---AAAGTAAAAA-TTCAAATATACTGTTGGTA-T-GGAAAAATGGTTTCAAACAattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttaattgggaagccccctcattttcaagacgtttataaagcgtatggattgtttttgaagttaaaccaaaatcatgcgtgattcttcagatgcaaaatcaaatttcaaaacgtttatttcaatcgaaagtccattctcctttatatgcattgtccaaccccttgtaaacagaggttattcggaactggggaaatcgttgtaaagcacaacaataagtgtctttttcgtcgtcataaaattataaatggtgacctttacagaatttattttgtgtgacatttaaagtaaaaattcaaatatactgttggtatggaaaaatggtttcaaaca
gi|4 : agtggttttcctagttccaaatcattttccagttccgaatgatttaagtttcataataagtgaaaactttatcttctggtacgaaattgttcagtaaaacataataaactttaatattaatgggcgcttatgtttgctaatgtctaatacacgtaataatatttttttttTTCGA-CACGT-GG-GAAGAACCTCG-T--TGGAGGGCG-ACAAACAATTGGGAATGGTTCTGTCTTTTTC--ATCGTCATAGAAGAACTAG-ATGG-AAATC-CTAGGAAGAA-A-ATATTGTGTGGT-TTT---TAAGTTAAAAGTTTAATTTTAGTTTTAGTG-T--GACAAATGGTTTCAAACACAT-GACGTA-GAGAT
gi|5 : TCAGAA-TAGTTGTCCAGTTCCGA---ATAATTT-------AAG--TTT---GATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----AT---TAAA---TAAA----------ACA-T--------------TACGATA-AT-AAATTGTTATTTACCATCTATTAAATTA--CTCT--ACACTTTT---CATAATTTAC---------TGAG-CAC-ATGGATTT-TTGTAAG----CTCCATAAAAA---GGAGTGCTTCA---TTTCCCG----AAAATCCGCCATGTTTGTTTTA--TGAAAAAAAGTGGAAAG-CCCCTCATTTTTAAGACGTAAAT-AAAG--TATAAACAGTTTagcgactgtaaagtggttcgaactcagttttctttattttctcataaactgataattcaagtgatttagcccgatctacatctacttttagtcacgtcactttcagaatgtggagcaacaagcacgttcat
gi|6 : gtcatttgcctagtTA---CATAAATTAT-GCATGATTCTTCAGATGATAGATCAAATTTCTA-AACTATTATTTCAATTCAAA-TTTTATTCTTC-TTTAGA-TGCATTTTCT--A--ACCACCTGAATATGGGCTATTCGG-AAC-T-GGTAAAA----TCGATG-C--AAG--GCACCAA-AATT-AG--------CGTCTTTTTC--GTCATCATAGAAACTCTAG-ATGGTGACTT-ATAC-AAGAA-CTATTTTGTGAGATATTT---AAAGTAAAAAGTTCAAATTAATTGTTGGAA-T-GGAAAAATGATTTAAAACACGTAaattgt
gi|7 : CCGAAATAGTTTTCCAGTTCCAA---ATAATTT-------AAG--TTT---AATG-AGT-GAA------ATCTTCCCGTACTAAATTCGTAAT---TTAA---TAGAAATAATATATACA-TATATGTATAATCAATGTGATA-AT-AACTT-TAATCCTTCAT-TGTTA--------TTTCCAAATT-----------TTTAC---------TGAT-CGT-ATGGA-TG-TTGTTGG----CTCGTTGAAAAGTGAGGGG-CTTAA----A----A----AAAATCCGCTAT
gi|8 : cagtgatctctctagttccaaaa---TT----G----AAAGTCCGCCATGTTTGTTTTAT--G-AAAATATCGGAAAACCTCCTCATTTTCAA----------------TAT--AT--------------CTA---CATAAATTAT-GCATGATGAATCAGATGAAAGATCGAATTTCTA-AACTTTTAATTCAATCCAAA-TTTTATTCTTC-TTTAAA-TGCGTTTTTTTTA--CCCCTGTGAATAGGGGATATTCGG-AA----------G----TTA-T-----AAGGCACA--AA-TATAGG---------CGTCTTTGTC--GTTCTCATAGAA
gi|9 : tcTCCGAA-TAGTTTTCCAGTTACGA---ATAATTT-------AAG--TTC---AATG-AGT-GAAAACTTTATCTTCTCGTGCGAAATT----AT---TAAA---CAAA----------ACA-T--------------CACG----AT-AACTT-TAATCCTTCCTCTCTTAGATAATTTTTTTTTTATTTTT---GGTAATTTAC---------TGAG-AGC-ATGAA-TT-TTGTTAC----TTCCTTAAAAAGAGGGAGTGCTTGA---TTTGC-A----AAAATCCGACATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGAGATAGCGACTGTAAAGTGGTTCGAACTCGGTTTTCTTTATTTTCTCATATACTGATAATTCAAGTGATTTAGCCAGATCTACATGTACATCTACTTTTAGTCACGTCACTTTCAG