lowQualScore : 11111111111111 11111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 11 22222222222222 1 2222222222 22222222222222 11 4444444444444444 111 1 8888888888888888888888888888 1 1 55555555555555555555555555555555555555555 11 444444444 222222 2 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333333333333333333333 333333 111 3333333 1111 1111 111 111 11 1 2222 1 6666666666666666666666666666666666666666666666666 44444444444 11111111 111 111 444444444444 1 11 22222 111 1 1111111 1 11 99999999999 1 1
lowQualScore : 0 333 7 0 33 77777777777777 0 9999999999 4 1 66666666666666 7 33 8 9 6666666666666666 8 2 111 6 3 777 6 1 3333333333333333333333333333 6 99 7 3 5 6 11111111111111111111111111111111111111111 55 555555555 2 000000 8 0 1 99 44 6 6 2 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 777777777777777777777 3 333333 111 0000000 4444 1 0 3333 000 99999 5 444 8 0 8 33 0 2222 66 0 0000000000000000000000000000000000000000000000000 11111111111 99999999 444 444 666666666666 5 8 44 2 6 00000 99999 8 8 6 1 6 99 6 777 5 2 7777777 4 1 33 0 11 88888888888 6 0 5 6
lowQualScore : . ... . . .. .............. . .......... . . .............. . .. . . ................ . . ... . . ... . . ............................ . .. . . . . ......................................... .. ......... . ...... . . . .. .. . . . ............................................................................................ . ..................... . ...... ... ....... .... . . .... ... ..... . ... . . . .. . .... .. . ................................................. ........... ........ ... ... ............ . . .. . . ..... ..... . . . . . .. . ... . . ....... . . .. . .. ........... . . . .
lowQualScore : 5 333 3 7 88 55555555555555 0 8888888888 0 2 00000000000000 0 88 0 6 8888888888888888 0 8 777 7 5 777 7 7 5555555555555555555555555555 7 22 7 7 0 2 11111111111111111111111111111111111111111 22 000000000 2 222222 0 0 8 44 22 7 7 5 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 555555555555555555555 2 333333 777 8888888 8888 6 3 9999 000 33333 7 000 0 8 0 88 0 8888 88 0 4444444444444444444444444444444444444444444444444 55555555555 55555555 000 000 666666666666 0 0 00 8 0 00000 22222 0 0 6 2 7 22 7 000 0 8 3333333 8 0 22 8 00 66666666666 0 6 0 0
consensus : NCTATTTTACNATACT---TCATTCGTAAGC--AAAAA--------AA--TAA-CCCAG---C---T--TTANTTTC-TAT-----AGT-TTGCACTAAAATTC--T-GTAAAAA---GTAT--A-T-TT-T-ATA---T-TAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA-A-------GGAAGAG--GGTGCCAAATGT-ACCCTT--TTCTCGCAAAAACG--AGC---CACGTG-----GAT-TGGGCCTA-GCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG-GT----AT--TT--TTGAA--ACA-----------------T--------G-TATGTA-----ACTT--TTT--------TT-TNTA----CATTTTT------TTTTTT--NA--AT-TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATTTGTAGA--TGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTT--GATGTTAAAA-AAAAG----CCC------TTT-CC---CAGAAAT------AATTTAAA-AA--GTATGATG-ACT---AAGAATA-NT-G---TT---TTGTTGTA---TTTTAA--TT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGA-GAGGTCC-T-ACAGTAAGCAATTTAAAATCGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCATTACAGATGTTTCT--ATAAATATTCGAGGAATTGGTACAGAAAAAAATCACCAGGTGTCTC
Reference ( gi|3 ) : GCTATTTTATCATACT---TCATTCGTAAGC--AAA--------------TAA-CCCAG---C---T--TTATTTTC-TCT-----AGT-CTGCACTAAAATTC--T-GCAAAAA---GTA---A-T-CT-T-ACA---T-TACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATGTAGATAAAAAAAA-AATGCCAAATGT-ACCATT--TTCGCACAAAAACA--AAC---CACATG-----GAT-TGCGTCTA-GCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG-GT----AT--TT--TTAAA--ACA-----------------T--------G-TATGTG-----ACTT--TTT--------TT-TTTA----CATTTTT------TTTGTT--AA--AT-TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATTTGTATA--TGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTT--ATTGTTAAAA-AAAAA----CCC-----ATTT-CC---CAGAAAT------AA---AAATAA--GTATGATG-GCT---AA-AATA-GT-G---TT---TTGTTGTA---TTTCCT--TT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGA-AAATTCC-T-ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCATTACAGGTGTTTCT--ATAATCATTC-----ATCGGTACAGAAAAAAATCACCAGGTTTTTC
gi|6 : CTATTTTACTATACTGTTTCATTCATAAGC--AAAAATGCATACAAAT-TAA-CCCAG---C---T--TTATATTC-TAT-----AGT-TTGCACTAAAATTC--T-GTAAAAG---GTAT--ATT-CT-T-ATA---T-TAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA
gi|2 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattTTATACTGCT---TCACTCATAAGC--AAAAAATGCATACAAATTAA-TCCAG---C---T--TTAATATC-TAT-----AAT-CTACACTAAAATGT--T-GTAAAAA---GTAT--A-T-TC-T-ATA---T-TAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA-------------------------GATG--ACC-TT--CTCTCACAAAAACA--A-C---CAGGTT-----GAT-TGGGCCTT-GCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTA-CTTTGAAT--TT--CTGAACAACACTCTTTATTAAGATTTTT--------GATATGTA-----GCTACATTG--------TA-TATA----CAATTTT------TGTTTT--CA--AT-TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATTTGTAGA--TGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTT--GATGTTATAA-AAAAG----CCC------TTT-TC---TA-AAAT------AATTTAAA-AACGGTATGATG-ACT---AAGAATA-TT-G---TT---TTGTTGTA---TTTTAA--GT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTA-GAAGTTC-T-ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA---ATT-----------GTGATCTAGGGTCAATACTGATGTTTCT--ATAAACAATTGAGAAATTGCTACAG--AAAAATCACCAgaggaaagaa
gi|1 : ttgACACT---GCAT--GTACGCTCAAACT------------TAATCCCAG---CGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTC--TAGTAAAAAACGGTAT--A-T-TT-TTATA---T-TAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTAGAGG-----GAAAGAAT-AGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTG-GGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG-G-----AT--TTTCTTGAA--CCG-----------------TCACCATTAC-TATCTAAAAATACTT--TTT--------TA-TTTGTGTCCATTTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGTTAAAAGAAGAG----CCCCTTTTACTT-CCCCACAGAAATGGTTAGAA---AAGCCG--GGATGATGAGCGAAAAA-AATAGGT-GCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGAt
gi|5 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaTAAAC--AAA--------------TAA-CTCAATCCC---TAATTAATTTC-TAT-----ACC-GTGCACTAAAGTTCTTT-G-AAAAA---CTATATA-T-TTAT-ATA---T-AAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGg
gi|4 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaactta-GCAAAAA---A-A---A-TGCA-T-ACAAAGTATATTCTTACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCT-GGAAAAGAttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|16 : tttattatactgcttcagtcataaA---T-TAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTAcgatcaaaatgtactctaacaaccacgtacatgtacgtggattgggcttagctatcttaggaaagatacctcttccatccggaatttctataagtgtttttccctttttttttcaatttgacttatgcatacatgtataatcaatatacatgtgcaatttctatttgtagatattggtacagatttggtcaccagttttcaagaaattgaagttaaatgttaaaaaagccccttttccagaaataatttaaaaagtatgataaacgatcgttttgttgtatttttattcaggcatggtaaacaggaatatctcaaaagacaaaatgaaaattcctatagtaagctatctaaaattgaggaaaatcaattgcctttcaaaaatgaattaaaaattatgaaaaataaattacaaagatttctaatctagggacatgtgtttctataaatattcaaggaattggtgcagaaaaaaatcaccaggtgtctcattccaccttaaaa
gi|4 : ctaTATCGTTTTT-CACTTACCTGGAAAAGACGAT-CAAAATGT-AC-------TCTAACAACCACG--TACATGTACGTG-----GAT-TGGGCTTA-GCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG-GA----AT--TT--CTA-----------------------------------TAAGTG----------------------TT-TTTC----CCTTTTT------TT--TT--CA--AT-TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATTTGTAGA--TATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTA--AATGTT--AA-AAAAG----CCC-----CTTT-TC---CAGAAAT------AATTTAAA-AA--GTATGAT---------A-AACG-ATCG---TT---TTGTTGTA---TTTTTA--TT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGA-AAATTCC-T-ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----ACATGTGTTTCT--ATAAATATTCAAGGAATTGGTGCAGAAAAAAATCACCAGGTGTCTCggtg
gi|10 : tttattatactgcttcagtcataagcaaaaaaaatgcatacaaagtatattcttacatattgtctttctgTGCCAATGGT-ATCCTT--TCCTCACAAAAACC--A-C---CACATACATGTAAT-TGGGTCTA-GCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG-GA----ATTATT--TTA------A-----------------T--------G----GT------ATTT--TTTATATGAGGTTGTGTA----CATTTTT------T---TT--CA--AT-TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACattccaccttaaaa
gi|15 : aaactg-----GAT-GGAGTTTT-GCTACT-GTAGG-AAAGAT-AACTCTTCCATCCGAAT----AT--TT--T
gi|5 : tatcacttacaagtatacaggttCCATT-TGAAG-AAAGAT-AACTCTTCCAT-CA-GT----AA--TT--TCTGA--ACA-----------------A--------G-CATGTacat
gi|14 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctttgggacttcT--------TT-TATA----AACTTTT------TTT-TT--AA---C-TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTTTGTAGA--TGTAAGT---ACA--G--ATTT-AAttt
gi|9 : aatacACTTTT------TTTTTT--AA---T-TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATTTCAAGA--TGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTT--GATGTAAAAA-AAAAAAAAGC--------TTTACA---CAGAAAT------AA---tttaatttaatgaca
gi|17 : atatgttccatccagaattcctgaactaaaagttttgcaatatttctatatgtggctaCTATTTACAGA--TATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAttaaaacagt
gi|7 : AA--GTATGATG-ACT---AAGAATA-TT-G---TT---TTGTTGTA---TTTTAA--TT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGA-GACGCCC-T-ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGT
gi|8 : gT-G---TT---TTCTTGTA---TTTTAA--CT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGA-GAGGTTC-T-ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGTTACAATTGTTTCTAGATAAATATTTGGGGGATTGGTACAG-AAATAATCACCacagataagtataagtatttgaggaattg
gi|11 : tCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAATTACAGATA-TTAG--ACAA-GAGGG-----ATTGTTACAGAAAAAAATCACCAAGTc
gi|13 : at-AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCATTGCAGATATTCCT--GTAAATATTTGTGGAATTGGTACAGAAAAAAATCACCggtgtctcattccccttta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TGAAAAACAAATGTGTGAGATCTGGTTTTATCACCGTAACAGATAGTTCTATAAATACACAAGGAAATGGTGTCCAAACATCACCAGGTGTGTCATTCTTCTTTAAACAAGTCG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 77777777777777777777777 2222222222 222222 222 6666666666666666666666666 99999999999999999999999 11 333333333 111111 2222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 11111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 11 777 3 11111111111111111111111 8 0000000000 1 333333 99 1 6 333 999 6 1 1 4 5 0 9999999999999999999999999 5 5 77 6 6 1 1 00000000000000000000000 11 8 11 2 111111111 777777 5 7 77 5 5 5 4444444 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 88 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 6 6 99 4444 77777 44 99 111 111 66666 66666 6 6 66666 2 111 4 2 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : .. ... . ....................... . .......... . ...... .. . . ... ... . . . . . . ......................... . . .. . . . . ....................... .. . .. . ......... ...... . . .. . . . ....... . ........................................................................................ ...... .. .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . . .. .... ..... .. .. ... ... ..... ..... . . ..... . ... . . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 77 555 2 00000000000000000000000 0 0000000000 0 000000 88 7 7 333 333 7 7 7 3 7 1 4444444444444444444444444 7 7 99 6 6 0 5 55555555555555555555555 66 0 00 8 777777777 777777 7 6 99 7 7 7 0000000 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444 77 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 2 7 22 2222 88888 00 00 777 777 77777 77777 7 7 77777 2 777 0 8 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA--------A---------ATTAA-CCCAG---C---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---------AGGAAAAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGTCTN-GCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG-GN----ATT-T--CTGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTNTA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTNAAA-AA--GT----ATGATGACT---AAGAATA-TTG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTACNATACT---TCATTCGTAAGCAAAAA--------A---------AT-AA-CCCAG---C---T--TTANTTTC------TATAGT-TTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---------AGGAAGAG---GGTGCCAAATGT-ACCCTT--TTCTCGCAAAAAC--GAGC---CACGTG-----GAT-TGGGCCTA-GCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG-GT----ATT-T--TTGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTNTA--CAT------TTTT------TTTTTT-NAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTG-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTTAAA-AA--GT----ATGATGACT---AAGAATA-NTG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAGGTCCT---ACAGTAAGCAATTTAAAATCGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : ACACT---GCAT--GTACGCTCAAA--------C---------TT-AATCCCAG---CGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTAG--------AGGGAAAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTGGG-CTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG-G-----ATT-TTCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAA-AA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC--CA-C---CACATACATGTAAT-TGGGTCTA-GCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG-GA----ATTAT--TTTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTT-GCTACT-GTAGG-AAAGAT-AACTCTTCCATCCGAAT----ATT-T--Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---------GGacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGCAAAAA--------ATGCATACAAATTAA-TCCAG---C---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA-----------GATGA-------------------CCTT--CTCTCACAAAAAC--AA-C---CAGGTT-----GAT-TGGGCCTT-GCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTA-CTTTGAATT-T--CTGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAA-AACGGT----ATGATGACT---AAGAATA-TTG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGCAAA---------------------T-AA-CCCAG---C---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATGTAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC--AAAC---CACATG-----GAT-TGCGTCTA-GCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG-GT----ATT-T--TTAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA---AAATAA--GT----ATGATGGCT---AA-AATA-GTG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA-----------------------------------AAATGT-AC-------TCTAACAACCAC--GTACATGTACGTG-----GAT-TGGGCTTA-GCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG-GA----ATT-T--C---------------------------------------T-ATA-----AGTG--TT--------T--TTCC-------------CTTT------TTTTTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAA-AA--GT----ATGATAA-----ACG---A-TCG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaAAACA--------A---------AT-AA-CTCAATCCC---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttatT-TGGGACTT-CCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG-TA----ATT-T--CTG-A--ACA-----------------A--------G-CAT-GTttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGCAAAAATGCATACAA---------ATTAA-CCCAG---C---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTAG--------AGGAAttt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcatt-AA--GT----ATGATGACT---AAGAATA-TTG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGagaa
gi|8 : gTG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : tTTCCATCCA-GA----ATT-C--CTGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAA-CA--GT----c
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 666666666666666666666 111111 222222 222 6666666666666666666666666 77777777777777777777777 11111 222222222 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 1 333 0 444444444444444444444 8 0 666666 1 333333 99 1 6 333 999 6 1 1 4 5 0 9999999999999999999999999 5 5 77 6 6 1 1 66666666666666666666666 88 22222 555555555 777777 5 1 1 5 5 5 5555 1 5 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 1 5 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 1 99 4444 888 44 1 111 111 111 66666 66666 6 6 66666 111 1 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : . ... . ..................... . . ...... . ...... .. . . ... ... . . . . . . ......................... . . .. . . . . ....................... .. ..... ......... ...... . . . . . . .... . . . ................................................................................... ...... . . .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . .. .... ... .. . ... ... ... ..... ..... . . ..... ... . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 0 333 7 000000000000000000000 0 8 000000 4 000000 44 7 7 333 333 7 7 7 3 7 1 4444444444444444444444444 7 7 99 6 6 0 5 99999999999999999999999 88 66666 999999999 777777 7 1 0 7 7 7 6666 0 0 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 444444 4 7 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 0 22 2222 666 00 0 777 777 777 77777 77777 7 7 77777 777 0 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA--------A---------NTTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---------GGGGAAAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GAATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA--------A---------ATTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---------AGGAAAAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGTCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GNATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTNTA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTNAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : AA--------A---------CTTAATCCCAGCGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTAG--------AGGGAAAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTGGGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG----GATTT-TCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAAAA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaacactgcatgtacgctcGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC--CA-C---CACATACATGTAAT-TGGGTCTAGCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG----GAATTATT-TTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTTGCTACT-GTAGG-AAAGAT-AACTCTTCCATCCGA---ATATT-Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---------GGtacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGCAAAAA--------ATGCATACAAATTAA-TCCAGC---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA---------G------------------ATG--ACC-TT--CTCTCACAAAAAC---AAC---CAGGTT-----GAT-TGGGCCTTGCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTACTTTGAATT-TC-TGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAAAACGGT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGCAAA----------------------TAA-CCCAGC---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATGTAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC--AAAC---CACATG-----GAT-TGCGTCTAGCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG----GTATT-TT-TAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA--AAATAA--GT----ATGATGG-CTAA-AATAG---TG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA-----------------------------------AAATGT-AC-------TCTAACAACCAC--GTACATGTACGTG-----GAT-TGGGCTTAGCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG----GAATT-TC-TA----------------------------------------TA-----AGTG--TT--------T--TTC-----CCT------TTTT------T--TTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAAAA--GT----ATGATAA---ACG---AT---CG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaTAAACAAATA--------A---------CTCAA-TCC--C---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttaT-TGGGACTTCCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG----TAATT-TC-TG-A--ACA-----------------A--------G-CAT-GTttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGCAAAAATGCATACAA---------ATTAA-CCCAGC---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA---------GAGGAAAG---Attt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGa
gi|8 : gT---TG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : TTCCATCCA----GAATT-CC-TGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAACA--GT----c
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 666666666666666666666 111111 222222 222 6666666666666666666666666 666666666666666666666666 11 222222222 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 1 333 0 222222222222222222222 8 0 666666 1 333333 99 1 6 333 999 6 1 1 4 5 0 9999999999999999999999999 5 5 77 6 6 1 1 111111111111111111111111 11 8 11 555555555 777777 5 0 1 5 5 5 0000 5 5 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 1 5 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 1 99 4444 888 44 1 111 111 111 66666 66666 6 6 66666 111 1 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : . ... . ..................... . . ...... . ...... .. . . ... ... . . . . . . ......................... . . .. . . . . ........................ .. . .. ......... ...... . . . . . . .... . . . ................................................................................... ...... . . .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . .. .... ... .. . ... ... ... ..... ..... . . ..... ... . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 0 333 7 444444444444444444444 0 8 000000 4 000000 44 7 7 333 333 7 7 7 3 7 1 4444444444444444444444444 7 7 99 6 6 0 5 000000000000000000000000 66 0 00 999999999 777777 7 4 0 7 7 7 6666 0 0 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444 4 7 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 4 22 2222 666 00 0 777 777 777 77777 77777 7 7 77777 777 0 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA--------AC---------TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA--------AN---------TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : AA--------AC---------TTAATCCCAGCGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTA---GAGGGA------AAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTGGGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG----GA-TTT-TCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAAAA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaacactgcatgtacgctcGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC--CA-C---CACATACATGTAAT-TGGGTCTAGCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG----GA-ATTATT-TTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTTGCTACT-GTAGG-AAAGAT-AACTCTTCCATCCG----AATATT-Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---G-Gtacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGCAAAAA--------ATGCATACAAATTAA-TCCAGC---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA---G-ATGA---------------------------CCTT--CTCTCACAAAAAC---AAC---CAGGTT-----GAT-TGGGCCTTGCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTACTTTGA-ATT-TC-TGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAAAACGGT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGCAAA----------------------TAA-CCCAGC---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATG-TAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC--AAAC---CACATG-----GAT-TGCGTCTAGCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG----GT-ATT-TT-TAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA--AAATAA--GT----ATGATGG-CTAA-AATAG---TG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA------------------------------------AAATGT-AC-------TCTAACAACCAC--GTACATGTACGTG-----GAT-TGGGCTTAGCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG----GA-ATT-TC-TA----------------------------------------TA-----AGTG--TT--------T--TTC-----CCT------TTTT------T--TTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAAAA--GT----ATGATAA---ACG---AT---CG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaTAAACAAATA--------AC---------TCAA-TCC--C---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttaT-TGGGACTTCCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG----TA-ATT-TC-TG-A--ACA-----------------A--------G-CAT-GTttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGCAAAAATGCATACAAA---------TTAA-CCCAGC---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA---G-AGGA------AAG---Attt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGa
gi|8 : gT---TG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : TTCCATCCA----GA-ATT-CC-TGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAACA--GT----c
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 666666666666666666 111111 222222 222 6666666666666666666666666 666666666666666666666666 11 222222222 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 1 333 0 111111111111111111 8 0 666666 1 333333 99 1 6 333 999 6 1 1 4 5 0 9999999999999999999999999 5 5 77 6 6 1 1 111111111111111111111111 11 8 11 555555555 777777 5 0 1 5 5 5 0000 5 5 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 1 5 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 1 99 4444 888 44 1 111 111 111 66666 66666 6 6 66666 111 1 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : . ... . .................. . . ...... . ...... .. . . ... ... . . . . . . ......................... . . .. . . . . ........................ .. . .. ......... ...... . . . . . . .... . . . ................................................................................... ...... . . .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . .. .... ... .. . ... ... ... ..... ..... . . ..... ... . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 0 333 7 888888888888888888 0 8 000000 4 000000 44 7 7 333 333 7 7 7 3 7 1 4444444444444444444444444 7 7 99 6 6 0 5 000000000000000000000000 66 0 00 999999999 777777 7 4 0 7 7 7 6666 0 0 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444 4 7 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 4 22 2222 666 00 0 777 777 777 77777 77777 7 7 77777 777 0 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC--A------TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC---------TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : AA-----AC---------TTAATCCCAGCGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTA---GAGGGA------AAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTGGGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG----GA-TTT-TCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAAAA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaacactgcatgtacgctcGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC--CA-C---CACATACATGTAAT-TGGGTCTAGCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG----GA-ATTATT-TTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTTGCTACT-GTAGG-AAAGAT-AACTCTTCCATCCG----AATATT-Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---G-Gtacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGCAAAAA-----ATGCATACAAATTAA-TCCAGC---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA---G-ATGA---------------------------CCTT--CTCTCACAAAAAC---AAC---CAGGTT-----GAT-TGGGCCTTGCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTACTTTGA-ATT-TC-TGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAAAACGGT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGCAAA-------------------TAA-CCCAGC---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATG-TAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC--AAAC---CACATG-----GAT-TGCGTCTAGCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG----GT-ATT-TT-TAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA--AAATAA--GT----ATGATGG-CTAA-AATAG---TG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA------------------------------------AAATGT-AC-------TCTAACAACCAC--GTACATGTACGTG-----GAT-TGGGCTTAGCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG----GA-ATT-TC-TA----------------------------------------TA-----AGTG--TT--------T--TTC-----CCT------TTTT------T--TTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAAAA--GT----ATGATAA---ACG---AT---CG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaTAAACAAATA-----AC---------TCAA-TCC--C---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttaT-TGGGACTTCCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG----TA-ATT-TC-TG-A--ACA-----------------A--------G-CAT-GTttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGCAAAAATGCATACAAA------TTAA-CCCAGC---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA---G-AGGA------AAG---Attt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGa
gi|8 : gT---TG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : TTCCATCCA----GA-ATT-CC-TGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAACA--GT----c
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 77777777777777777777 111111 222222 222 6666666666666666666666666 666666666666666666666666 11 222222222 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 1 333 0 11111111111111111111 8 0 666666 1 333333 99 1 6 333 999 6 1 1 4 5 0 9999999999999999999999999 5 5 77 6 6 1 1 111111111111111111111111 11 8 11 555555555 777777 5 0 1 5 5 5 0000 5 5 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 1 5 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 1 99 4444 888 44 1 111 111 111 66666 66666 6 6 66666 111 1 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : . ... . .................... . . ...... . ...... .. . . ... ... . . . . . . ......................... . . .. . . . . ........................ .. . .. ......... ...... . . . . . . .... . . . ................................................................................... ...... . . .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . .. .... ... .. . ... ... ... ..... ..... . . ..... ... . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 0 333 7 22222222222222222222 0 8 000000 4 000000 44 7 7 333 333 7 7 7 3 7 1 4444444444444444444444444 7 7 99 6 6 0 5 000000000000000000000000 66 0 00 999999999 777777 7 4 0 7 7 7 6666 0 0 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444 4 7 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 4 22 2222 666 00 0 777 777 777 77777 77777 7 7 77777 777 0 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC--------A--TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC--------A--TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : AA-----AC-----------TTAATCCCAGCGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTA---GAGGGA------AAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTGGGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG----GA-TTT-TCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAAAA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaacactgcatgtacgctcGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC--CA-C---CACATACATGTAAT-TGGGTCTAGCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG----GA-ATTATT-TTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTTGCTACT-GTAGG-AAAGAT-AACTCTTCCATCCG----AATATT-Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---G-Gtacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGCAAAAA-----ATGCATACAAA--TTAA-TCCAGC---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA---G-ATGA---------------------------CCTT--CTCTCACAAAAAC---AAC---CAGGTT-----GAT-TGGGCCTTGCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTACTTTGA-ATT-TC-TGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAAAACGGT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGCAAA---------------------TAA-CCCAGC---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATG-TAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC--AAAC---CACATG-----GAT-TGCGTCTAGCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG----GT-ATT-TT-TAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA--AAATAA--GT----ATGATGG-CTAA-AATAG---TG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA------------------------------------AAATGT-AC-------TCTAACAACCAC--GTACATGTACGTG-----GAT-TGGGCTTAGCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG----GA-ATT-TC-TA----------------------------------------TA-----AGTG--TT--------T--TTC-----CCT------TTTT------T--TTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAAAA--GT----ATGATAA---ACG---AT---CG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaTAAACAAATA-----AC-----------TCAA-TCC--C---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttaT-TGGGACTTCCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG----TA-ATT-TC-TG-A--ACA-----------------A--------G-CAT-GTttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGCAAAAATGCATAC--------AAATTAA-CCCAGC---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA---G-AGGA------AAG---Attt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGa
gi|8 : gT---TG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : TTCCATCCA----GA-ATT-CC-TGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAACA--GT----c
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 77777777777777777777 111111 222222 222 6666666666666666666666666 666666666666666666666666 11 222222222 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 1 333 0 11111111111111111111 8 0 666666 1 333333 99 1 6 333 999 6 1 1 4 5 0 9999999999999999999999999 5 5 77 6 6 1 1 111111111111111111111111 11 8 11 555555555 777777 5 0 1 5 5 5 0000 5 5 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 1 5 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 1 99 4444 888 44 1 111 111 111 66666 66666 6 6 66666 111 1 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : . ... . .................... . . ...... . ...... .. . . ... ... . . . . . . ......................... . . .. . . . . ........................ .. . .. ......... ...... . . . . . . .... . . . ................................................................................... ...... . . .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . .. .... ... .. . ... ... ... ..... ..... . . ..... ... . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 0 333 7 22222222222222222222 0 8 000000 4 000000 44 7 7 333 333 7 7 7 3 7 1 4444444444444444444444444 7 7 99 6 6 0 5 000000000000000000000000 66 0 00 999999999 777777 7 4 0 7 7 7 6666 0 0 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444 4 7 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 4 22 2222 666 00 0 777 777 777 77777 77777 7 7 77777 777 0 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC--------A--TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC--------A--TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : AA-----AC-----------TTAATCCCAGCGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCT-------------------------TACTCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTA---GAGGGA------AAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGAGG---CACGTG-----GATCTGGGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG----GA-TTT-TCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAAAA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggtaacactgcatgtacgctcGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC--CA-C---CACATACATGTAAT-TGGGTCTAGCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG----GA-ATTATT-TTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTTGCTACT-GTAGG-AAAGAT-AACTCTTCCATCCG----AATATT-Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTACTTT-TTCCT------------------------GTA-TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---G-Gtacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGCAAAAA-----ATGCATACAAA--TTAA-TCCAGC---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCT--------------------GTA-TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA---G-ATGA---------------------------CCTT--CTCTCACAAAAAC---AAC---CAGGTT-----GAT-TGGGCCTTGCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTACTTTGA-ATT-TC-TGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAAAACGGT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGCAAA---------------------TAA-CCCAGC---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATG-TAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC--AAAC---CACATG-----GAT-TGCGTCTAGCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG----GT-ATT-TT-TAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA--AAATAA--GT----ATGATGG-CTAA-AATAG---TG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT------------------------GTA-TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA------------------------------------AAATGT-AC-------TCTAACAACCAC--GTACATGTACGTG-----GAT-TGGGCTTAGCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG----GA-ATT-TC-TA----------------------------------------TA-----AGTG--TT--------T--TTC-----CCT------TTTT------T--TTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAAAA--GT----ATGATAA---ACG---AT---CG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaTAAACAAATA-----AC-----------TCAA-TCC--C---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TT-------------------------------TCGT-TTATGGC-TA--TCGGACGAAAGattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttaT-TGGGACTTCCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG----TA-ATT-TC-TG-A--ACA-----------------A--------G-CAT-GTttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGCAAAAATGCATAC--------AAATTAA-CCCAGC---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNG-TCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA---G-AGGA------AAG---Attt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGa
gi|8 : gT---TG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : TTCCATCCA----GA-ATT-CC-TGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAACA--GT----c
blockSeqs : C GTT AAATGCATACAAA . TAA A . C A . ACT TA . G A T . TNNNNNNNNNNNNNNNNNNNNNNNN . . . G A T T CATGTAGATAAAAAAAAAAT TG . . GTACATG ACATGT . A . . . CTTT T A . AACAACACTCTTTATTAAGATTTTTGATATGTAGCTACATTGTATATACAA . T . . G TACATG . AT T . . CA . . . . T . . A AAAA AT . C A A . T CG . CT GA T . . . . . . . . . T C AG . TTT AA . TACATG CGTAAC AA AG C CA TC A .
blockSeqs : T . AATGCATACAAA . T T . C A . . CT . G T T . TTCTG . . . A G A T GATGA AT . . AAAC T . T . . . . . . . AACTAAAAGTTTTGCAATATTTCTATATGTGGCTAA . T . . T . . . G . . . . . . . . . . T . AA . . . . . A . . CT GA T . . . . . . . . . T . . . A AT . . . . . T TG . A .
blockSeqs : TAAC . T A . G A . . C . C T G . G . . . G G T T . AT . . CAC T . T . . . . . . . AATGGTATTTTTTATATGAGGTTGTGTACA . G . . T . . . T . . . . . . . . . . A . AA . . . . . T . . CT A T . . . . . . . . . A . . . A TT . . . . . A TG . A .
blockSeqs : . . T T . T G . . T . G T G . G . . . G G C G . . . AAC G . A . . . . . . . AAACATGTATGTGACTTTTTTTTTTACAT . T . . T . . . T . . . . . . . . . . A . . . . . . . A . . . G . . . . . . . . . . A . . . T TT . . . . . T CA . . .
blockSeqs : A . . C . A T G . G . . . G . A . G . A . . . . . . . TAAGTGTTTTTCCCT . T . . T . . . T . . . . . . . . . . . . . . . . . . . A . . . A AG . . . . . T TG . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . AG . . . . . T TG . .
blockSeqs : . . . . . . . . . . . . . . T C
blockSeqCons : CAA***************** T***** ****** C* *** TG*********************** ** ** NAC****** ****** **** ****** *** ******* T*** ** *** ** ** ** A** ****** *** **** CT* *** *** *** ***** ***** ***** *** ***
originalCons : NCTATTTTATNATACT---TCATTCGTAAGCAAAAA-----AC--------A--TTAA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCT------------------------GTA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC--GAAC---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
finalCons : NCTATTTTATNATACT---TCATTCGTAAGCAAACAA-----------------TTAA-CCCAGCT-----TTATTTTC------TATAGTC-TGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCTTG-----------------------TA-TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAACNAC------CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATTT---TCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTAA--TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGACT-AAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 8888888888888 111111 222222 222 555555555555555555555555555555 666666666666666666666666 11 33333333333 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1111 222222 111 2222222 1111 11 111 1111 333333 111 1111 111 111 111 11111 11111 11111 111 111 111111 111111 111
lowQualScore : 1 777 3 11 6666666666666 8 8 0 666666 1 333333 99 1 6 333 999 6 1 1 7 5 999999999999999999999999999999 6 99 9 9 1 1 111111111111111111111111 11 8 11 11111111111 777777 5 0 1 5 5 5 0000 5 5 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666 1 5 2222 1 888888 000 6666666 1111 0 66 888 66 66 5 99 6 6 11 8 222 7777 11 8 8 111111 8 444 0 1 99 4444 888 44 1 111 111 111 66666 66666 6 6 66666 111 1 5 77 5 333 0 33 5 0 0 444444 444444 66 00 66 2 11 77 8 444 0
lowQualScore : . ... . .. ............. . . . ...... . ...... .. . . ... ... . . . . . .............................. . .. . . . . ........................ .. . .. ........... ...... . . . . . . .... . . . ................................................................................... ...... . . .... . ...... ... ....... .... . .. ... .. .. . .. . . .. . ... .... .. . . ...... . ... . . .. .... ... .. . ... ... ... ..... ..... . . ..... ... . . .. . ... . .. . . . ...... ...... .. .. .. . .. .. . ... .
lowQualScore : 0 555 2 00 4444444444444 0 0 8 000000 4 000000 44 7 7 333 333 7 7 7 9 7 333333333333333333333333333333 7 22 3 3 0 5 000000000000000000000000 66 0 00 77777777777 777777 7 4 0 7 7 7 6666 0 0 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444 4 7 1111 4 666666 000 4444444 4444 2 99 888 99 99 0 22 7 7 00 0 222 0000 88 0 0 000000 0 000 8 4 22 2222 666 00 0 777 777 777 77777 77777 7 7 77777 777 0 7 99 7 333 4 22 0 2 2 444444 444444 99 22 99 2 44 99 4 000 2
consensus : NCTATTTTATNATACT---TCATTCGTAAGC--AAAAA-------CAAATT-AA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCTT---GTA-----------------------TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC---A-A-C---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
Reference ( family-891 ) : NCTATTTTATNATACT---TCATTCGTAAGC--AAA---------CAA-TT-AA-CCCAGC---T--TTATTTTC------TATAGT-CTGCACTAAAATTCT-GTAAAAA---GTATATT-T-T-ATATTAGCATTGCATATTTTGTC-TTTCTT---GTA-----------------------TCGT-TTCTCACTTA--TCTGGGGAAAGAAGGTNATTGCTTTTA---G-GGGA------AAG---AGTGCCAAATGT-ACCCTT--TTCTCACAAAAAC---N-A-C---CACGTG-----GAT-TGGGCCTNGCTATT-TTAGG-AAAGAT-AACTCTTCCATCCG----GA-ATT-TC-TGAA--ACA-----------------T--------G-TAT-GTA-----ACTT--TT--------T--TTTATA--CAT------TTTT------TTTTTT-CAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTAGATGTTGGT---ACA--G--ATTT-GACCG--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-A-TGT----TAAAA-AAAAG-CCC------TTT-CC---CAGAAATAATTAAAAAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAGAAGTCCT---ACAGTANGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAATTGTGAAAAATAAAANAC-AAAGAATTGTGATCTAGGGTCAT------TAC------AGAT--GTTTCT--ATAAATATTCGAGGAATTGGTA--CAGAAAAAAATCACCA---GGTGTCTC
gi|1 : TAACACT---GCAT--GTACGCTCAAA---------C---TT-AATCCCAGCGCTT--TTATTCTCATCTTATACAGTGTTGCGATAAA-TTCTAGTAAAAAACGGTATATT-T-TTATATTAACATTGCATATTTTGTCGTTTCTT---AC------------------------TCATCTTCTCACTTAGGTCT-GGGAAAGAAGGTGATTGGCTTTA---GAGGGA------AAGAATAGTGCCAAATGTAACCCTTGGTTCTTGCAAAAACATGA-G-G---CACGTG-----GATCTGGGCTATGCTATTGTTAGGAAAAGATAAACTCTT-CATGCG----GA-TTT-TCTTGAA--CCG-----------------TCACCATTAC-TAT-CTAAAAATACTT--TT--------TTATTTGTGTCCAT------TTTTCAAATATTTTTTGCAACCATGTTGACTGTTGCAGGGT--TATCATTTGTAAAGCGGATCACACATGTGCATCGTATTCTTTTTGTGTAGGTGTTGGTAACACA--GGAATTTGGACCGACCCAGTTTTTCAA-GGAAATTTGAACATTTACATTGT----TAAAAGAAGAG-CCCCTTTTACTT-CCCCACAGAAATGGTTAGAAAA--GCCGGGATGATGAGCGAAAAAAATAGGTGCAATTTCATTGTTGTATCTTTTCCTAATCGAGCGCAGAAATGGTAAACAGAGAATATCTCAGACAAGCAAAGACCGATAACAGGTTCCGTGACAGTATGCAATTTAGA
gi|10 : ttatactcggtcaaggttattgggtttggctcattcatttgtaggGTGCCAATGGT-ATCCTT--TCCTCACAAAAAC---C-A-C---CACATACATGTAAT-TGGGTCTAGCCATT-TTAGG-AAAGAT-AACTCTTCCACCCG----GA-ATTATT-TTA-----A-----------------T--------G-----GTA-----TTTT--TTATATGAGGT--TGTGTA--CA---------TT------TTTTTT-CAAT----TTGAC-TTTGCA------TATCAT---TAT-------TATACATGTGCATT------------------TATTGGT---ACA--G--ATTT-GACg
gi|11 : aaactCGTT-AA--AAAATGAATA--AAAAATTTTGAAAAATAAAAGACAAAAGAATTGTGATCTAGGATAAT------TAC------AGAT--AT-------TAGACA--AGAGGGATTGTTA--CAGAAAAAAATCACCAAGTGGTGTCTC
gi|12 : atTGAAAAAC-AAATGTGTGAGATCTGGTTTTAT------CACCGTAACAGAT--AGTTCT--ATAAATACACAAGGAAATGGTGTCC----AAACATCACCA---GGTGTGTCattccccttta
gi|13 : -AA--AA-ATGAATA--AAAAATTATGAAAAATAAAATAC-AAAGAAGTGTAATCTATAGTCAT------TGC------AGAT--ATTCCT--GTAAATATTTGTGGAATTGGTA--CAGAAAAAAATCACCattcttctttaaacaagtcg
gi|14 : tg--------T--TTTATA--AAC------TTTT------TTTTT---AAC----TTGACGTTCGCA------TATCAT---TAA-------TATACATGTGTATT---TTCTCTT--TGTAGATGTAAGT---ACA--G--ATTT-AA
gi|15 : aatac---CAGGTT-----GAT-GGAGTTTTGCTACT-GTAGG-AAAGAT-AACTCTTCCATCCG----AATATT-Ttttaatttaatgaca
gi|16 : tatcacttacaagtataATTAGCATTGCATACTAC-TT-TTTCCT---GTA-----------------------TCGT-TTCCCACTTG--CCTGAGAAAA----GTTATGGCTTTTA---G-Gtacat
gi|17 : ctaCTATT--TACAGATATTAGT---ACA--T--ATCT-GACTG--CCAG-TTTTCAA-GAtg
gi|2 : TTATACTGCT---TCACTCATAAGC--AAAAAATGCATACAAATT-AA-TCCAGC---T--TTAATATC------TATAAT-CTACACTAAAATGTT-GTAAAAA---GTATATT-C-T-ATATTAGCATTGCATATTTTTTC-TTTCTTTCTGTA-----------------------TCGT-TTCTCACTTA--TCTAAG-AAAGAAGGTAATTGCTTTTA---G-ATGA---------------------------CCTT--CTCTCACAAAAAC---A-A-C---CAGGTT-----GAT-TGGGCCTTGCTTTT-TAAGG-AAAGAT-AACTCTTCCATCTACTTTGA-ATT-TC-TGAACAACACTCTTTATTAAGATTTTT--------GATAT-GTA-----GCTACATT--------G--TATATA--CAA------TTTT------TGTTTT-CAAT----TTGATTTTTGCA------TATCAT---TAAAT-----TATACATGCGCATT---GTCTATT--TGTAGATGTTGGT---ACACAG--ATCT-GACCG--CCAG-TTTTCAA-GCAA--TTGAA-GTTTG-A-TGT----TATAA-AAAAG-CCC------TTT-TC---TA-AAATAATTTAAAAACGGT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAAGT-----CAAACATGGTAAACAG-AAATATCTCAAA-AGACAAA-----ATTAGAAGTTCT---ACAGAATACAGTTTAGAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATTTTAAAAATTGTGAAAAA--------------ATTGTGATCTAGGGTCAA------TAC------TGAT--GTTTCT--ATAAACAATTGAGAAATTGCTA--CAG--AAAAATCACCA---
gi|3 : ttgCTATTTTATCATACT---TCATTCGTAAGC--AAA--------------T-AA-CCCAGC---T--TTATTTTC------TCTAGT-CTGCACTAAAATTCT-GCAAAAA---GTA-ATC-T-T-ACATTACCATTGCATATTTTGTC-TTTCT----GTA-----------------------TCGT-TTCTCACTTA--TCTGGGGAAAGAATGTTATTGCTTTTACATG-TAGATAAAAAAAA---AATGCCAAATGT-ACCATT--TTCGCACAAAAAC---A-AAC---CACATG-----GAT-TGCGTCTAGCTATT-CTAGG-AAAGAT-AACTCTTCCATCCG----GT-ATT-TT-TAAA--ACA-----------------T--------G-TAT-GTG-----ACTT--TT--------T--TTTTTA--CAT------TTTT------TTTGTT-AAAT----TTGACTTTTGCA------TATCAT---TAA-------TATACATGTGCATT---TTCTATT--TGTATATGTTGGT---ACA--G--ATTT-GACCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTTA-T-TGT----TAAAA-AAAAA-CCCA-----TTT-CC---CAGAAATAA--AAATAA--GT----ATGATGG-CTAA-AATAG---TG---TT---TTGTTGTATTT-----CCTTT-----CAGACATGGTACACAG-GAATATCTCAAA-GGGCAGA-----ATGAAAATTCCT---ACAGTATGCAATTTAAAATTGATGAAATTCAATTTCCGTT-AA--AA-ATGAATA--AAAAAGTATGAAAAATACATTAC-AAAGAAATGTGATCTAGGGTCAT------TAC------AGGT--GTTTCT--ATAATCATTC-----ATCGGTA--CAGAAAAAAATCACCA---GGTTTTTCt
gi|4 : gAAAATGC--ATACAAA---GTATATT-C-T-----------TACATATT--GTC-TTTCT----GTA-----------------------TCGT-TTTTCACTTA--CCTGGA-AAAGACGATCA------------------------------------AAATGT-AC-------TCTAACAACCAC---GTA-CATGTACGTG-----GAT-TGGGCTTAGCTATC-TTAGG-AAAGAT-ACCTCTTCCATCCG----GA-ATT-TC-TA----------------------------------------TA-----AGTG--TT--------T--TTC-----CCT------TTTT------T--TTT-CAAT----TTGACTTATGCATACATGTATAAT---CAA-------TATACATGTGCAAT---TTCTATT--TGTAGATATTGGT---ACA--G--ATTT-GGTCA--CCAG-TTTTCAA-GAAA--TTGAA-GTTAA-A-TGT----T--AA-AAAAGCCCC------TTT-TC---CAGAAATAATTTAAAAA--GT----ATGATAA---ACG---AT---CG---TT---TTGTTGTATTT-----TTATT-----CAGGCATGGTAAACAG-GAATATCTCAAA-AGACAAA-----ATGAAAATTCCT---ATAGTAAGCTATCTAAAATTGAGGAAAATCAATTGCCTTTCAA--AA-ATGAATT--AAAAATTATGAAAAATAAATTAC-AAAGATTTCTAATCTAGGG-----------AC------ATGT--GTTTCT--ATAAATATTCAAGGAATTGGTG--CAGAAAAAAATCACCA---GGTGTCTC
gi|5 : tttattatactgcttcagtcataagcaaaaTAAAC--AAA---------TAA-CTCAA-TCC--C---TAATTAATTTC------TATACC-GTGCACTAAAGTTCT-TTGAAAAACTATATATT-TAT-ATATAAGCACTGCGTATTTT-TC-TTTCGT---TTA-----------------------Tattccaccttaaaa
gi|5 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttaT-TGGGACTTCCCATT-TGAAG-AAAGAT-AACTCTTCCATCAG----TA-ATT-TC-TG-A--ACA-----------------A--------G-CAT-GTggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctttgggacttcccatttgaagaaagataactcttccatcagtaatttctgaacaagcatgtttt
gi|6 : gtattctgtttagtttgttggtctgtattgcctgtttatagtttttgtcttcaaattgttcgatatatttttgttttgactcaatttacaacaaaatgttccacgagaacacccgcgctttatttcgttttgttttactgctttccgggccctcaagtgaacttataaacaaataactcaatccctaattaatttctataccgtgcactaaagttctttgaaaaactatatatttatatataagcactgcgtatttttctttcgtttatggctatcggacgaaagttttctaactaccttactatcttatactaagtcgctCTATTTTACTATACTGTTTCATTCATAAGC--AAAAATGCATA-CAAATT-AA-CCCAGC---T--TTATATTC------TATAGT-TTGCACTAAAATTCT-GTAAAAG---GTATATTCT-T-ATATTAACATTGCACATTTTGTC-TTTCTT---NNNNNNNNNNNNNNNNNNNNNNNNNGTCGT-TTCTCATTTA--TCT-GGGAAAGAAGATAATTGCGTTTA---G-AGGA------AAG---Attt
gi|7 : aaacattttatttatagtatcatggatgtgttaacactcattgaattcaatatgtggtcttcattttgctttgaaattcactgattttgttttaaatgtttgtgttacatccatatgattttcttttcattAA--GT----ATGATGA-CTAAGAATAT---TG---TT---TTGTTGTATTT-----TAATT-----CAGACAAGGTAAACAG-GAATATCCCAAA-AGACAAA-----ATGAGACGCCCT---ACAATAAGCAATTGAAAATTGATGAAACTCAATTTCCGTA-AAAGAA-ATGAATA--AAAAACTGTGAAAAATAAAAGAC-AAAGAATTGTGATCTAGGGTCATTACATGTAC------AGATAAG----T--ATAAGTATTTGAGGAATTGa
gi|8 : gT---TG---TT---TTCTTGTATTT-----TAACT-----CAGACATGGAAAATAG-GAACATCTCAAA-AGACAAA-----TTGAGAGGTTCT---ACAGTAAGCAATATAAAATCAATGAAATTCAATTTCCGTT-AA--AA-A-AAAT-----AAATTGTGAAAAATAAAAGAC-GAAGAATTGTGATCTATGGTTGT------TAC------AATT--GTTTCTAGATAAATATTTGGGGGATTGGTA--CAG-AAATAATCACC
gi|9 : TTCCATCCA----GA-ATT-CC-TGAACTAAA-----------------A--------G-TTTTGCA-----A--T--AT--------T--TCTATA--TGTGGCTAACTTT------TTTTTT-TAAT----TTGACTTTTGCA------TATCAT---TGA-------TATATAAGTGCATT---TTCTATT--TCAAGATGTGTGT---ACA--G--ATTT-GACTG--CTAG-TTT--AATGAAA--TTGAA-GTTTG-A-TGTAAAAAAAAA-AAAAG---C------TTTACA---CAGAAATAATTAAAACA--GT----c