lowQualScore : 2 3 1 1 55 22
lowQualScore : . . . . .. ..
lowQualScore : 5 2 6 6 44 22
consensus : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
Reference ( gi|10 ) : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|8 : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGA
gi|5 : cccctctGACCTC-TTTACCAA-TTAAA-A--CAC--TGAATGGAAGA
gi|12 : gccccttgGACTTG-TTTACCAA-TT-AA-A--CAC--TGAATGGAAGGA
gi|1 : GGCTTA-TTTACCAA-TT-AA-A--CAC--TGAATGAAAGAAGt
gi|3 : tttatccctttGACTTG-TTTACCAA-TT-AA-A--CACACTGAATGGGAGAAGG
gi|4 : aatGACTTG-TT-ACCAA-TT-AA----CAC--TGAATGGAAGAAGat
gi|16 : atccctcttCCTC-TTCACCAA-TT-AA-A--CAC--TGAATTTAAGAAG
gi|11 : CCTCGTTCACCAA-TT-AA-A--CAC--TGAAT-GAAGAAGG
gi|15 : CTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGat
gi|17 : C-TTCACCAAATT-AA-A--CAC--TGAATGGAAGAAGG
gi|23 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|20 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|19 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|22 : -TTCACCAA-TT-AA-A--CAC--TGAATAGAAGAAGGa
gi|21 : -TTCACTAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|24 : -TTCAC-AA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|14 : TTACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGat
gi|25 : cttgTCACCAA-TT-AA-AA-CAC--TGAATGGAAGAAGG
gi|9 : TCACCAA-TT-AA-AAACAC--TGAATGGAAGAAGGa
gi|26 : cttgTCACCAA-TT-AA-AA-CAT--TGAATGGAAGAAGGa
gi|7 : TTACCAAATT-AAGA--CAC--TGAGTGGAAGAAGGa
gi|27 : acttgCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|13 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|2 : tctgtgCATCTA-TT-AA-A--CTC--TGAATGGAAGAAGG
gi|6 : aatttatatccctttgaACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ACTGAATGGAAGAAGGATAAAATTGTTGCTT
Alignments
lowQualScore : 2 3 1 1 55 22
lowQualScore : . . . . .. ..
lowQualScore : 4 1 5 5 22 11
consensus : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
Reference ( family-890 ) : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|1 : GGCTTA-TTTACCAA-TT-AA-A--CAC--TGAATGAAAGAAG
gi|10 : tttatccctttGACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|11 : CCTCGTTCACCAA-TT-AA-A--CAC--TGAAT-GAAGAAGG
gi|12 : GACTTG-TTTACCAA-TT-AA-A--CAC--TGAATGGAAGGAat
gi|13 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGt
gi|14 : tctgtgTTACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|15 : cttgCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|16 : CCTC-TTCACCAA-TT-AA-A--CAC--TGAATTTAAGAAG
gi|17 : C-TTCACCAAATT-AA-A--CAC--TGAATGGAAGAAGG
gi|19 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|2 : CATCTA-TT-AA-A--CTC--TGAATGGAAGAAGGa
gi|20 : aatttatatccctttga-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|21 : -TTCACTAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|22 : -TTCACCAA-TT-AA-A--CAC--TGAATAGAAGAAGGa
gi|23 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|24 : -TTCAC-AA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|25 : TCACCAA-TT-AA-AA-CAC--TGAATGGAAGAAGGat
gi|26 : TCACCAA-TT-AA-AA-CAT--TGAATGGAAGAAGGa
gi|27 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|3 : GACTTG-TTTACCAA-TT-AA-A--CACACTGAATGGGAGAAGGa
gi|4 : aatGACTTG-TT-ACCAA-TT-AA----CAC--TGAATGGAAGAAGat
gi|5 : atccctcttGACCTC-TTTACCAA-TTAAA-A--CAC--TGAATGGAAGA
gi|6 : gccccttgACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|7 : cttgtatTTACCAAATT-AAGA--CAC--TGAGTGGAAGAAGGataaa
gi|8 : acttgGACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAa
gi|9 : cccctctTCACCAA-TT-AA-AAACAC--TGAATGGAAGAAGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTGAATGGAAGAAGGATAAAATTGTTGCTT
Alignments
lowQualScore : 2 3 1 1 55 22
lowQualScore : . . . . .. ..
lowQualScore : 4 1 5 5 22 11
consensus : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
Reference ( family-890 ) : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|1 : GGCTTA-TTTACCAA-TT-AA-A--CAC--TGAATGAAAGAAG
gi|10 : tttatccctttGACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|11 : CCTCGTTCACCAA-TT-AA-A--CAC--TGAAT-GAAGAAGG
gi|12 : GACTTG-TTTACCAA-TT-AA-A--CAC--TGAATGGAAGGAat
gi|13 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGt
gi|14 : tctgtgTTACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|15 : cttgCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|16 : CCTC-TTCACCAA-TT-AA-A--CAC--TGAATTTAAGAAG
gi|17 : C-TTCACCAAATT-AA-A--CAC--TGAATGGAAGAAGG
gi|19 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|2 : CATCTA-TT-AA-A--CTC--TGAATGGAAGAAGGa
gi|20 : aatttatatccctttga-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|21 : -TTCACTAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|22 : -TTCACCAA-TT-AA-A--CAC--TGAATAGAAGAAGGa
gi|23 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|24 : -TTCAC-AA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|25 : TCACCAA-TT-AA-AA-CAC--TGAATGGAAGAAGGat
gi|26 : TCACCAA-TT-AA-AA-CAT--TGAATGGAAGAAGGa
gi|27 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|3 : GACTTG-TTTACCAA-TT-AA-A--CACACTGAATGGGAGAAGGa
gi|4 : aatGACTTG-TT-ACCAA-TT-AA----CAC--TGAATGGAAGAAGat
gi|5 : atccctcttGACCTC-TTTACCAA-TTAAA-A--CAC--TGAATGGAAGA
gi|6 : gccccttgACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|7 : cttgtatTTACCAAATT-AAGA--CAC--TGAGTGGAAGAAGGataaa
gi|8 : acttgGACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAa
gi|9 : cccctctTCACCAA-TT-AA-AAACAC--TGAATGGAAGAAGG
blockSeqs : G A A G AA AC
blockSeqs : . A . . A .
blockSeqs : . . . . A .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
finalCons : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTGAATGGAAGAAGGATAAAATTGTTGCTT
Alignments
lowQualScore : 2 3 1 1 55 22
lowQualScore : . . . . .. ..
lowQualScore : 4 1 5 5 22 11
consensus : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
Reference ( family-890 ) : GACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|1 : GGCTTA-TTTACCAA-TT-AA-A--CAC--TGAATGAAAGAAG
gi|10 : tttatccctttGACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|11 : CCTCGTTCACCAA-TT-AA-A--CAC--TGAAT-GAAGAAGG
gi|12 : GACTTG-TTTACCAA-TT-AA-A--CAC--TGAATGGAAGGAat
gi|13 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGt
gi|14 : tctgtgTTACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|15 : cttgCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|16 : CCTC-TTCACCAA-TT-AA-A--CAC--TGAATTTAAGAAG
gi|17 : C-TTCACCAAATT-AA-A--CAC--TGAATGGAAGAAGG
gi|19 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|2 : CATCTA-TT-AA-A--CTC--TGAATGGAAGAAGGa
gi|20 : aatttatatccctttga-TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|21 : -TTCACTAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|22 : -TTCACCAA-TT-AA-A--CAC--TGAATAGAAGAAGGa
gi|23 : -TTCACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|24 : -TTCAC-AA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|25 : TCACCAA-TT-AA-AA-CAC--TGAATGGAAGAAGGat
gi|26 : TCACCAA-TT-AA-AA-CAT--TGAATGGAAGAAGGa
gi|27 : CACCAA-TT-AA-A--CAC--TGAATGGAAGAAGGa
gi|3 : GACTTG-TTTACCAA-TT-AA-A--CACACTGAATGGGAGAAGGa
gi|4 : aatGACTTG-TT-ACCAA-TT-AA----CAC--TGAATGGAAGAAGat
gi|5 : atccctcttGACCTC-TTTACCAA-TTAAA-A--CAC--TGAATGGAAGA
gi|6 : gccccttgACCAA-TT-AA-A--CAC--TGAATGGAAGAAGG
gi|7 : cttgtatTTACCAAATT-AAGA--CAC--TGAGTGGAAGAAGGataaa
gi|8 : acttgGACCTC-TTCACCAA-TT-AA-A--CAC--TGAATGGAa
gi|9 : cccctctTCACCAA-TT-AA-AAACAC--TGAATGGAAGAAGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTGAATGGAAGAAGGATAAAATTGTTGCTT