lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111
lowQualScore : 4 1 55 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 22 11111 1 222222222222 1111111111111 1111 1 22 99999999999999999999999999 1 22222222 11 11 1 22 77777777777777777777 1 111 111111 1 8888888888888888888888888888888888888888888888888888888 22222222 111 555555555555555555555555 1 111 22222222 22222222222222222222222222222222222222222222 11 1
lowQualScore : 0 5 55 6 6 6 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 1 1 00 1 2 66 00000 66 4 7 66 777777777777 888 5555555555555 4 0 0000 77 0 77 6 6 22 7 00000000000000000000000000 0 99999999 3 33 33 0 33 3 55555555555555555555 0 999 777777 0 2222222222222222222222222222222222222222222222222222222 99 2 1 1 6 6 6 44444444 111 666666666666666666666666 6 1 6 1 111 99999 6 44444444 66666666666666666666666666666666666666666666 0 5 0 5 77 99 3 55 1 6
lowQualScore : . . .. . . . . .................................................................................................................................................................................................................................................................................................................... . . . .. . . .. ..... .. . . .. ............ ... ............. . . .... .. . .. . . .. . .......................... . ........ . .. .. . .. . .................... . ... ...... . ....................................................... .. . . . . . . ........ ... ........................ . . . . ... ..... . ........ ............................................ . . . . .. .. . .. . .
lowQualScore : 0 0 00 0 0 0 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 1 0 33 1 4 11 66666 11 4 8 11 555555555555 888 1111111111111 0 2 1111 99 4 99 7 0 77 3 33333333333333333333333333 0 88888888 2 88 88 0 88 2 55555555555555555555 0 555 222222 0 8888888888888888888888888888888888888888888888888888888 22 2 0 0 7 7 7 22222222 777 888888888888888888888888 7 7 7 7 777 77777 7 22222222 33333333333333333333333333333333333333333333 1 7 7 7 99 22 2 88 3 7
consensus : NNAGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACNGNTGACNCCGATCAAAGCTC---AAGAAGCNTGGCAAAGCTCAGAATNTCTNCACACAAGTTGNATATTGATGGNCAGGNAGGATACTGCGACNGCTANGNNNCNCCC-CTGAATTTAGANTATGCTCTCAG---TGTAATNTGATGG-AGTN-GAGGA-TGAAC-TNCATA-TTTTACTTTTG----TGCT-TCNAAATATAA-GC------CANTC-A---AAAGGTT--------------AC--AACTTTTAGAAA--GCA--T---CAAAA-TCAATTTCAAACTTTTCTT--TTA---T--AAC-ACC-GC--TGAAAAA-C------T---AAT---GTGGA-T--T-TCAA--CAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGG-AA-ATTTA-TTTTTTGAAAACAGTAAAAGG-A-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAGC-TTGCTTG-T-ATATACTACTAT----ACATAT-AAGG-CATAATGTAGCCTGTTT-ATT-A-T-TAT-TTTAANGT-GCATT--TAT--ACGT----T-CAA------C-----TTTGA--ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGT---------------A--------TAT-GACAGTTTTG---TACTT--CATCCTGAAC-T--------AATG--------T---ACNA---TA--T-----TGTGTGTAAAA---ACATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCCT
Reference ( gi|1 ) : ACAGCAA-TGGCAAATT--AAGAACTTGCGTTAAATTAAAAAAAAAAATTGTGGAAGAGAACACTATCTCATTAATAACATTGATCAGAGCTCGAGGAAAAGCATAATTAAGCTTCGCATCTCGGCCCATCAGCTAAATATTGA--AAAAGGGAAGATAC----ACAG---GACTTCCCCC-CTGAACTTAGAATGTGCTCTCAG---TGCGATTTGATGGCAGTT-GAAGA-TGAAC-TTCATT-TTTTACTTTT-----TGCT-TCAAAAT-TAA---------CAGT--A---AAAGGCT--------------A---AACTTTTAGAAG--GTA--T---CAAAA-TCAATTTCAAACTTTTCTT--TTA---T--AAC-ACC-GC--TGAAAAA-T------T---AAT---GTGGA-T--T-TCCA--CAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGG-AA-ATTTATTTTTTTGAAAACAGTAAAAG--A-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAGCCTTGCTT--TAAAATATTACTAA----ACATAT-AATG-CATAATGTTACCTGTTT-ATT-A-T-TAT-TTTAAGGT-GCATT--TAT--ATGT----T-CAA------C-----TTTGA--ATTTCCCTGTAC-ATT-TG-CA--------TTAA---TGT---------------A--------TAT-GACACTCTTG---TACTT--CACCCTGAAC-T--------AATG--------T---ACCA---TA--T-----TGTGT-TAAAAAAGACATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATATTCTATCTTT
gi|4 : AGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACTGTTGACACCTA----AACTC-------AGCAT--------------TCTCTGC-----AATTAAATATTGATGAATAGGGAGGATATTGCGACTG---TACATCACC---TAAGTTAAGAGTATGCTTTCAA---TGTGATAT-ATG-CAGGGAGAGGA-CAAACATGCATA-ATTT-CTTTTGGTTGTGTT-TCCAAAT--AATATACTGGTCAAT--ATGGAGAGGTTTGCAATCAATAGAAA---AACTTTTTGA---------T------AA-TCGGTCT-AAA-TTTTCTT--T---------------------GTAAAA-C------T---AAT---ATGAA-T--T-CTTAAATAATGAAAGTAAAGAAG----TTTAT--TTCTGCT--TGG-AACATTCATTTT
gi|7 : tATAAGTAATTTTGATCAAAG------AAGAAGCTTGGCAAAGCTCAGAATATCTTCACACAAGTTGCATATTGA--GTCAGGTA-GATAC-----CAGCTAGGGTACCCCCACTGAACTTTGAATATG---TCAGAATTGTAACT-GGTGA-AGTA-GAGGA-TGAAA-TACATT-TTTTG--TTT-----TGCTGTGTAAATATAAAGC------CAGA--A---CGAG---------------------AACCTTTACAGA--GCATTT---CAATA-TCATGTACTAACTT---CT--TTA---T-------CG-GC--TGAA
gi|8 : tttg-CTGAATTTAAATTTTGCTCTCAG---TACAATCTAA----AG---GGGGA-TAAAT-GTC------TTAGTTTG-----TCCC-TTATA---TAA---------CTTTT-A---AAAGGTT--------------ATGTAA-TACTGGAGATTATA--T---CAAAAATGAAGTT-AAACTTTTCTT--TTA---T--AACAACT-GC--TGAGAAA-CTACGCAT---AAT---GTGGA-T--T-T
gi|2 : GATGG-AATT-GAAAAATGAAC-TTCATAATTTTACTTTTAT---TG-T-CCAAAATATAA---------CATTCGA---AAAGGTT--------------CC--AACTTTTAAAAG--TCA--TAG-CAAAAATCAATTC--AACTTTC--T--TTA---T--AAC-ACC-GCGGTGGTAAA-C------T---AAT---GTGGA-T--T-CTCA---AATGAAAA-AAAGAAGAATTTTTGTCCGCTTGCTGCTGG-Att
gi|3 : ---AAAGGGT--------------AC--AACT---AGTAG------------AGAA-T--ATATCAAACATT-CTT--TCT---T--AAC-ACCTGC--TGGAGAA-T----------AAT---GTGGA-T--TCTCAA--TAATGAAAGTAAAGAAG---TTTTGT--GATTGCT--TGG-AAGATTT--TTTTTGGAAAAT-TTAAAAG--AACAAATTTAAGTATAAATATAT-ATAAT-TAC-A------TGTATACTGA--AAG-TACAGC-TTGCTTG-TAATTTACTGCTAT----ACATGT-AAGA-CATAATGTTA----TTT-ATT---------TTTA-GAT-GCATT---AT--TCAT----TACAA------T-----TTTGA--ATTTTCCTGTGC-ATT-TG-CA--------TTAA---TGC---------------A--------TAT-GGCAGTTTTG---TTCTTTATATACTGAAC-T--------AATGTT------T---AAAA---TA--TACTACTGTGCGTAAAA-----ATGCCTTCTGGGGGCC-CTTATAA--TTGATTGAT--AAAGAATCTTcaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagtatgatatttgaaagctacagcgtgcttaattactaaccatgcatattaaggcataatgtagccttttatttattacatttatgttattgttcaatatacttttgaattcccctgtacatttgatcaaacttgtatgtagattttgatctattctcctgaacgtaatgccatttaatttgtgtgtgaaaatcatgccccatttgattgcgtaataaagaatcttgt
gi|11 : g---AAAGATT--------------AC--AACTTTTAGAAA--GTA--TATCTAAAA-TCA-TTT-----TTTTCTTCTTTA---T--AAC-ACCTGC--TGAAAAA-C------T---AATTATGTGGA-T--TCTCAA--CAATGAAAACAAAGAAgt
gi|12 : tatA--T---CAAAAATCAATT-CAAACTTTTCTT--TGA---T--AAC-ACCCGC--TGAAAAAAT------T---AAT---GTGGAAT--T-TCCA--CAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGG-AA-A
gi|15 : --T---CAAAA-GCAAATCCAA-CTTTTCTT--T-A---TTAAAT-TCT-GC--TGGAAAA-C------T---------------------CAA--TAATGAAAGCAAAGAA----TTTTGA--GTCTGCT--TGG-AA-Aa
gi|13 : aatAGAA-TAAATT-CAAAATTTCCTT--TTAAAAT--AAC-ACCTGC--TGAAAAA-C------TAGAAAT---GTGGC-CTGT-TTAA--TAATGAAAGCAAAGGAA---TTTTTA--GTTTGTT--TG
gi|5 : A--CAATGAAAACAAAGAAG---CTTCGT--GCTTGCT--TGGAAA-ATTTA--TTTTTGAAAACAGTAAAAGA-A-TAAAT--------------GT-TCAAT-TAT-ATACCGGTATAT--TGA--AAG-AACAG-CTTGCTTG-T--AATACTACTAT----ACATAT-AAAG-AATAATGTAGCCTGGTT-ATT-ATT-TAT-TTTAAAGT-TCATT--TATACATGTATGAT-TAA------C-----TTTGA--ATTTTCCTGTGC-ATT-TG-CATCAAATTTTCAA---TGT---------------ATACAAATGTAT-GACAGTTTTG---TACCT--TATCCTGAAC-TATTGTTTAAATA--------T---ACTA---TT--G-----TGTGT-TAAA----ACATGCCTCCT-GGGGCC-CA--TGA--CATGTTAAT--AAAGAATCTTGTATCcat
gi|6 : ctaTTGAAAACAGTAAAAAGAA-CAAA---------------ATGTTAATATAT-A------TAAAT--TGAGAAAG-TACAGC-TTGCTTGGTCATATAT----AT----ACATAT-AGGGGCATGCTGTAGCCTGTTTCATT-A-TGTAT-TT-AACGTAGAATTATTAT--AGGT----T-CAATAGTAAC-----TTTGAGAATTTCC-TGTGCCATTATGGCA--------TTAA---TGT---------------A--------TAT-G-CACT-TTG---TACT---CATCCTGAAC-T--------AATG--------TTTAATAA---TA--C-----CGTA----------ACCTGCCCTCT-GGA--C-CT--TGA--TTTGTTAAT--AAAGAATATACTCTCCT
gi|2 : gta-TATGA------TAT-T--TGA--AAGCTACAGCGT-GCTT------A-ATTACTAACCATGCATATTAAGG-CATAATGTAGCCT-TTT-ATTTA-T-TACATTTA---T-G---T--TAT---TGT----T-CAA------TATACTTTTGA--ATTCCCCTGTAC-ATT-TG--A--------TCAAACTTGT---------------A--------TGTAGA---TTTTGATCTA-TT--C-TCCTGAACGT--------AATG-------------CCATT-TAATT-----TGTGTGTGAAAA--TCATGCC---------CCATT--TGA--TTGCGTAAT--AAAGAATCTTgtagtata
gi|10 : gatggaattgaaaaatgaacttcataattttacttttattgtccaaaatataacattcgaaaaggttccaacttttaaaagtcatagcaaaaatcaattcaactttctttataacaccgcggtggtaaactaatgtggattctcaaatgaaaaaaagaagaatttttgtccgcttgctgctggacaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagTGA--ATTTTCCTGTAT-ATT-TG-CA--------TCAA---TGTACATTGACACCCGGAA--------TAT-GACACTTCTG---TACCT--CATCCTGATC-T--------AATGTTTAAATAT---ACT----TA--C-----TGTGTGTAAAA---ACATGCCTTCT-GAGGCC-CT--Tgt
gi|9 : --ATTTGCTTGTGT-ATT-TG-CA--------TTAT---TGT---------------A--------TAG-GACAGTTTTG---TACTT--CATCCTAAAC-T--------AATG--------T---TTTATACTA--T-----TGTATGTAAAA-----ATGACTTCT-GGGGCC-CT--TGATGTTGG-TGATA-AAAGAATCTT
gi|16 : gGTCTTCT-GGGGCC-CT--TAA--TTGGTTAATAAAAAGAATTTTGTATCTTgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TCAAGTTTCCCAACCCTATTTACCAATGTACATTGTAGTCTGTTTTGAACTACTGTTTAAATAAAGCTTTGTATTTCAAACTGCCTTCCAGGGCC
Alignments
lowQualScore : 1 11 99999999999 333333333 3333333333333 22222 33333 1 666666666666666666 1 111 1111111 11 11 2222222222222222 555555555555555 333333333333333333333 11 1 1111111111111 11 1 11 1 666666666666666 1 222222 11 11 3333333 1111 111 222222 444444 22222222 111 555555555555555 11 111 22222222 555555555555555555 11111111 22222 11
lowQualScore : 5 2 88 2 00000000000 3 4 1 1 1 6 6 777777777 1 6666666666666 1 1 33333 11 55555 1 2 222222222222222222 0 1 1 2 0 777 44 3 0 2222222 8 33 3 22 3 6666666666666666 88 444444444444444 99 3 5 22 5 333333333333333333333 8 66 4 55 55 777 4 6 55 9999999999999 4 66 99 888 66 66 3 6 33 9 3 6 0 222222222222222 0 8 8 333333 0 11 11 8 8 1111111 3 8 8 8 6 55 8 8 2222 8 0 44 8 5 111 77 333333 8 333333 5 5 5 5 00000000 000 666666666666666 3 00 000 77 5 00000000 888888888888888888 77777777 0 0 00000 5 5 66 77 1 33 6
lowQualScore : . . .. . ........... . . . . . . . ......... . ............. . . ..... .. ..... . . .................. . . . . . ... .. . . ....... . .. . .. . ................ .. ............... .. . . .. . ..................... . .. . .. .. ... . . .. ............. . .. .. ... .. .. . . .. . . . . ............... . . . ...... . .. .. . . ....... . . . . . .. . . .... . . .. . . ... .. ...... . ...... . . . . ........ ... ............... . .. ... .. . ........ .................. ........ . . ..... . . .. .. . .. .
lowQualScore : 5 5 55 5 00000000000 0 0 0 0 0 7 7 000000000 0 7777777777777 0 0 33333 77 77777 0 0 000000000000000000 0 0 2 5 2 555 22 2 8 8888888 0 00 8 44 8 8888888888888888 88 222222222222222 33 0 7 44 7 888888888888888888888 0 44 7 55 55 000 0 0 55 3333333333333 4 11 44 888 99 99 3 7 22 2 2 5 0 000000000000000 0 0 0 000000 8 00 00 0 0 0000000 2 0 0 0 0 66 0 0 6666 0 8 66 0 0 888 44 000000 0 000000 7 7 7 7 77777777 000 444444444444444 6 00 000 99 7 77777777 444444444444444444 44444444 7 3 77777 0 0 99 99 4 66 0
consensus : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AAGCTC-G-ATCTCTGC-CAC-AGTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-A-GTNGAGGA-TGAAC-TNCATN-TTTTACTT----T--TGTGCTTCNAAAT-ATAA--CAGTC-A------AAAGG-TTACA-ACTNTTAG-AG-----A--GCA--T---C---AAAA-TCAATTTCAAACTTTTCT--TT--TA---TAAC-ACC-GC--TGAAAAA-C------TA---ATGTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGT------T-CAATA----CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
Reference ( family-879 ) : NNAGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACNGNTGACNCCGATCAAAGCTCAAG---AAGCNTGGCAAAGCTCAGAATNTCTNCACACAAGTTGNATATTGATGGNCAGGNAGGATACTGCGACNGCTANGNNNCNCCC-CTGAATTTAGANTATGCTCTCAG---TGTAATNTGATGG-A-GTNGAGGA-TGAAC-TNCATA-TTTTACTT----T--TGTGCTTCNAAAT-ATAAGCCANTC-A------AAAGG-TTACA-ACTTTTAG-AA-----A--GCA--T---C---AAAA-TCAATTTCAAACTTTTCT--TT--TA---TAAC-ACC-GC--TGAAAAA-C------TA---ATGTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAANGT-GCATT--TATACGT------T-CAA------CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCCT
gi|1 : AGCAA-TGGCAAATT--AAGAACTTGCGTTAAATTAAAAAAAAAAATTGTGGAAGAGAACACTATCTCATTAATAACATTGATCAGAGCTCGAGGAAAAGCATAATTAAGCTTCGCATCTCGGCCCATCAGCTAAATATTGA--AAAAGGGAAGATAC----ACAG---GACTTCCCCC-CTGAACTTAGAATGTGCTCTCAG---TGCGATTTGATGGCA-GTTGAAGA-TGAAC-TTCATT-TTTTACTT----T--T-TGCTTCAAAAT--TAA--CAGT--A------AAAGG-CTA-A-ACTTTTAG-AA-----G--GTA--T---C---AAAA-TCAATTTCAAACTTTTCT--TT--TA---TAAC-ACC-GC--TGAAAAA-T------TA---ATGTGGA-T--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTATTTTTTTGAAAACAGTAAAA-GA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAGCCTTGCTTT--AA-AATATTA-CTAAACATAT-AATG-CATAATGTTACCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATATGT------T-CAA------CTTTGA-ATTTCCCTGTAC-ATT-TG-CA--------TTAA---TGTA---------------TATGACAC-TCTTG---TACTT--CACCCTGAAC-T--------AATG---T--------ACCA--TA--T-----TGTGT-TAAAAAAGA-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATATTCTATCT
gi|10 : acTGA-ATTTTCCTGTAT-ATT-TG-CA--------TCAA---TGTACATTGACACCCGGAATATGACAC-TTCTG---TACCT--CATCCTGATC-T--------AATG---TTTAAATATACT---TA--C-----TGTGTGTAAAA---A-CATGCCTTCT-GAGGCC-CT--Tt
gi|11 : ------AAAGA-TTACA-ACTTTTAG-AA-----A--GTA--TATCT---AAAA-TC-ATTT-----TTTTCTTCTT--TA---TAAC-ACCTGC--TGAAAAA-C------TAATTATGTGGA-T--TC-TCAACAATGAAAACAAAGAA
gi|12 : tatA--T---C---AAAAATCAATT-CAAACTTTTCT--TT--GA---TAAC-ACCCGC--TGAAAAAAT------TA---ATGTGGAAT--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-
gi|13 : ---AGAA-TAAATT-CAAAATTTCCT--TT--TAAAATAAC-ACCTGC--TGAAAAA-C------TAGAAATGTGGC-C--TGTTTAATAATGAAAGCAAAGGAA---TTTTTA--GTTTGTT--TGa
gi|15 : --T---C---AAAA-GCAAATCCAA-CTTTTCT--TTATTA----AAT-TCT-GC--TGGAAAA-C------T-------------------CAATAATGAAAGCAAAGAA----TTTTGA--GTCTGCT--TGGAA-A-cat
gi|16 : aatGTCTTCT-GGGGCC-CT--TAA--TTGGTTAATAAAAAGAATTTTGTATCT
gi|2 : GATGG-A-ATTGAAAAATGAAC-TTCATAATTTTACTT----T--TATTGTCCAAAAT-ATAA--CATTCGA------AAAGG-TTCCA-ACTTTTAA-AAGTCATA--GCA----------AAAA-TCAATTC--AACTTT--C--TT--TA---TAAC-ACC-GCGGTGGTAAA-C------TA---ATGTGGA-T--TC-TCA--AATGAAAA-AAAGAAGAATTTTTGTCCGCTTGCTGCTGGAgtata
gi|2 : -TATGA------TAT-T--TGA--AAGCTACAG-CGTGCTTA---A-T-TACTAACCATGCATATTAAGG-CATAATGTAGCCT-TTT-ATTTA-T-TACATTTA---T-G---T--TAT-TGT------T-CAATATAC-TTTTGA-ATTCCCCTGTAC-ATT-TG--A--------TCAAACTTGTA---------------TGT---AGATTTTGATCTA-TT--C-TCCTGAACGT--------AATG-------------CCATTTAATT-----TGTGTGTGAAA---ATCATGCC---------CCATT--TGA--TTGCGTAAT--AAAGAATCTTGTcaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagtatgatatttgaaagctacagcgtgcttaattactaaccatgcatattaaggcataatgtagccttttatttattacatttatgttattgttcaatatacttttgaattcccctgtacatttgatcaaacttgtatgtagattttgatctattctcctgaacgtaatgccatttaatttgtgtgtgaaaatcatgccccatttgattgcgtaataaagaatcttgt
gi|3 : gatggaattgaaaaatgaacttcataattttacttttattgtccaaaatataacattcgaaaaggttccaacttttaaaagtcatagcaaaaatcaattcaactttctttataacaccgcggtggtaaactaatgtggattctcaaatgaaaaaaagaagaatttttgtccgcttgctgctggacaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacag------AAAGG-GTACA-ACTAGTAG-AG-----A------------------A-T--ATATCAAACATT-CT--TT--CT---TAAC-ACCTGC--TGGAGAA--------TA---ATGTGGA-T--TC-TCAATAATGAAAGTAAAGAAG---TTTTGT--GATTGCT--TGGAAGA-TTT--TTTTTGGAAAAT-TTAAAAGAA-CAAATTTAAGTATAAATATAT-ATAAT-TAC-A------TGTATACTGA--AAG-TACAG-CTTGCTTG--TAATTTACTG-CTATACATGT-AAGA-CATAATGT--------T-A-TT----TAT-TTTTAGAT-GCATT---ATTCAT------TACAA------TTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TTAA---TGCA---------------TATGGCAG-TTTTG---TTCTTTATATACTGAAC-T--------AATGTT-T--------AAAA--TA--TACTACTGTGCGTAAAA------ATGCCTTCTGGGGGCC-CTTATAA--TTGATTGAT--AAAGAATCTTGT
gi|4 : gAGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACTGTTGACACC--T--AAACTC-------AGCAT--------------TCTCTGC-----AATTAAATATTGATGAATAGGGAGGATATTGCGACTG-TACATCA----C-CTAAGTTAAGAGTATGCTTTCAA---TGTGATAT-ATGC-AGGGAGAGGA-CAAACATGCATA-ATTT-CTTTTGGT--TGTGTTTCCAAATAATATACTGGTC-AATATGGAGAGGTTTGCA-ATCAATAGAAA-----A--ACT--T---TTTGATAA-TCGGTCT-AAA-TTTTCT--T---------------------TGTAAAA-C------TA---ATATGAA-TTCT--TAAATAATGAAAGTAAAGAAG----TTTAT--TTCTGCT--TGGAACA-TTCA-TTTT
gi|5 : tAACAATGAAAACAAAGAAG---CTTCGT--GCTTGCT--TGGAA-AATTTA-TTTTT-GAAAACAGTAAAAGAA-TAAAT--------------GT-TCAAT-TAT-ATACCGGTATAT--TGA--AAG-AACAG-CTTGCTTG--TA--ATACTA-CTATACATAT-AAAG-AATAATGTAGCCTGGTT-A-TTATT-TAT-TTTAAAGT-TCATT--TATACATGTATGAT-TAA------CTTTGA-ATTTTCCTGTGC-ATT-TG-CATCAAATTTTCAA---TGTATACAAATG-------TATGACAG-TTTTG---TACCT--TATCCTGAAC-TATTGTTTAAATA---T--------AC----TA--T-----TGTGTGTTAAA---A-CATGCCTCCT-GGGGCC-CA--TGA--CATGTTAAT--AAAGAATCTTGTATC
gi|6 : ctTTGAAAACAGTAAAAAGAACAAA---------------ATGTTAATATAT-A------TAAAT--TGAGAAAG-TACAG-CTTGCTTGGTCA-TATA-----TATACATAT-AGGGGCATGCTGTAGCCTGTTTCA-TTA-TGTAT-TT-AACGTAGAATTATTATAGGT------T-CAATAGTAACTTTGAGAATTTCCTGTGCCATTATGGCA--------TTAA---TGTA---------------TATG-CA--CTTTG---TACT---CATCCTGAAC-T--------AATG---TTTA-----ATAA--TA--C-----CGT-------A---A-CCTGCCCTCT-GGA--C-CT--TGA--TTTGTTAAT--AAAGAAT
gi|7 : gtaGATCAAAG---AAG---AAGCTTGGCAAAGCTCAGAATATCTTCACACAAGTTGCATATTGA--GTCAGGTA-GATAC-----CAGCTAGGGTACCCCCACTGAACTTTGAATATG---TCAGAATTGTAA-CTGGTGA-A-GTAGAGGA-TGAAA-TACATT-TTTTGTTT----TGCTGTG----TAAAT-ATAA---AGCC-A------GAACG---AGA-ACCTTTAC-AG-----A--GCATTT---C---AATA-TCATGTACTAACTT---C--TT--TA---T-----CG-GC--TGAAatactctcctgtagtata
gi|8 : tttgataagtaatttt-CTGAATTTAAATTTTGCTCTCAG---TACAATCTAA----A-G--GGGGA-TAAA------TG-TCTTAGTT----T---GTCCCTT---AT-ATAA--CTTTT-A------AAAGG-TTATGTAATACTGG-AG-----ATTATA--T---C---AAAAATGAAGTT-AAACTTTTCT--TT--TA---TAACAACT-GC--TGAGAAA-CTACGCATA---ATGTGGA-T--T--T
gi|9 : -ATTTGCTTGTGT-ATT-TG-CA--------TTAT---TGTA---------------TAGGACAG-TTTTG---TACTT--CATCCTAAAC-T--------AATGTTTT--------ATAC--TA--T-----TGTATGTAAAA------ATGACTTCT-GGGGCC-CT--TGATGTTGG-TGATA-AAAGAATCTTGTtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAAGTTTCCCAACCCTATTTACCAATGTACATTGTAGTCTGTTTTGAACTACTGTTTAAATAAAGCTTTGTATTTCAAACTGCCTTCCAGGGCC
Alignments
lowQualScore : 1 11 44444444444 99999999999999999999999999999999999999999999999 11 3333333333 1111 111 11 111 11 333333333333333 1111 11 111111 3333333333333333333333 11 1 11111111 11 1 11 1 666666666666666 1 222222 11 11 3333333 1111 111 55555555555 22222222 111 555555555555555 11 111 22222222 555555555555555555 11111111 22222 11
lowQualScore : 5 1 88 1 33333333333 1 1 1 6 55555555555555555555555555555555555555555555555 88 1 6 6666666666 1 3333 1 1 2 0 777 33 3 0 11 777 8 33 3 99 3 555555555555555 4444 3 11 666666 3 5 3 5 11 9999999999999999999999 8 66 1 7777777777 4 6 55 66666666 777 777 4 66 99 888 66 66 3 6 33 9 3 6 0 222222222222222 0 8 8 333333 0 11 11 8 8 1111111 3 8 8 8 6 55 8 8 2222 8 0 44 8 5 111 77 8 00000000000 5 5 5 5 00000000 000 666666666666666 3 00 000 77 5 00000000 888888888888888888 77777777 0 0 00000 5 5 66 77 1 33
lowQualScore : . . .. . ........... . . . . ............................................... .. . . .......... . .... . . . . ... .. . . .. ... . .. . .. . ............... .... . .. ...... . . . . .. ...................... . .. . .......... . . .. ........ ... ... . .. .. ... .. .. . . .. . . . . ............... . . . ...... . .. .. . . ....... . . . . . .. . . .... . . .. . . ... .. . ........... . . . . ........ ... ............... . .. ... .. . ........ .................. ........ . . ..... . . .. .. . ..
lowQualScore : 5 0 55 0 55555555555 0 0 0 7 77777777777777777777777777777777777777777777777 33 0 7 0000000000 0 3333 2 2 5 2 555 55 2 8 22 444 0 00 8 00 8 888888888888888 8888 2 22 444444 6 7 0 7 33 5555555555555555555555 0 44 3 2222222222 0 0 55 33333333 888 888 4 11 44 888 99 99 3 7 22 2 2 5 0 000000000000000 0 0 0 000000 8 00 00 0 0 0000000 2 0 0 0 0 66 0 0 6666 0 8 00 0 0 888 44 0 44444444444 7 7 7 7 77777777 000 444444444444444 6 00 000 99 7 77777777 444444444444444444 44444444 7 3 77777 0 0 99 99 4 66
consensus : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-AGTN-GAGGA-TGAAC-TNCATN-TTTTACTTT--TG----TGCTTCNAAATA---TAACAGTC-AA------AAGGTT-ACA-ACTNTTAGAG-----A--G-CA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-C------TA---AT---GTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CA--AT--A----CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
Reference ( family-879 ) : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-AGTN-GAGGA-TGAAC-TNCATN-TTTTACTTT--TG----TGCTTCNAAATA---TAACAGTC-AA------AAGGTT-ACA-ACTNTTAGAG-----A--G-CA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-C------TA---AT---GTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CA--AT--A----CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
gi|1 : AGCAA-TGGCAAATT--AAGAACTTGCGTTAAATTAAAAAAAAAAATTGTGGAAGAGAACACTATCTCATTAATAACATTGATCAGAGCTCGAGGAAAAGCATAATTAA-GCTTCGC-ATCTCGGC-CCATCA-GCTAAATATTGA--AAAAGGGAAGATAC----ACAG---GACTTCCCCC-CTGAACTTAGAATGTGCTCTCAG---TGCGATTTGATGGCAGTT-GAAGA-TGAAC-TTCATT-TTTTACTTT--T-----TGCTTCAAAAT----TAACAGT--AA------AAGGCT-A-A-ACTTTTAGAA-----G--G-TA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-T------TA---AT---GTGGA-T--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTATTTTTTTGAAAACAGTAAAA-GA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAGCCTTGCTTT--AA-AATATTA-CTAAACATAT-AATG-CATAATGTTACCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATATGTT-CA------A----CTTTGA-ATTTCCCTGTAC-ATT-TG-CA--------TTAA---TGTA---------------TATGACAC-TCTTG---TACTT--CACCCTGAAC-T--------AATG---T--------ACCA--TA--T-----TGTGT-TAAAAAAGA-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATATTCTATCTT
gi|10 : acTGA-ATTTTCCTGTAT-ATT-TG-CA--------TCAA---TGTACATTGACACCCGGAATATGACAC-TTCTG---TACCT--CATCCTGATC-T--------AATG---TTTAAATATACT---TA--C-----TGTGTGTAAAA---A-CATGCCTTCT-GAGGCC-CT--Tt
gi|11 : A------AAGATT-ACA-ACTTTTAGAA-----A--G-TA--TATCT---AAAA-TCA-TTT-----TTTTCTTCTT--TA---TAAC-ACCTGC--TGAAAAA-C------TA---ATTATGTGGA-T--TC-TCAACAATGAAAACAAAGAA
gi|12 : tatA--T---C---AAAAATCAATT-CAAACTTTTCTT--T--GA---TAAC-ACCCGC--TGAAAAAAT------TA---AT---GTGGAAT--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-
gi|13 : ---AGAA-TAAATT-CAAAATTTCCTT--T--TAAAATAAC-ACCTGC--TGAAAAA-C------TAGAAAT---GTGGC-C--TGTTTAATAATGAAAGCAAAGGAA---TTTTTA--GTTTGTT--TGa
gi|15 : --T---C---AAAA-GCAAATCCAA-CTTTTCTT--TATTA----AAT-TCT-GC--TGGAAAA-C------T----------------------CAATAATGAAAGCAAAGAA----TTTTGA--GTCTGCT--TGGAA-A-cat
gi|16 : aatGTCTTCT-GGGGCC-CT--TAA--TTGGTTAATAAAAAGAATTTTGTATCTT
gi|2 : GATGG-AATT-GAAAAATGAAC-TTCATAATTTTACTTT--TA----TTGTCCAAAATA---TAACATTCGAA------AAGGTT-CCA-ACTTTTAAAAGTCATA--G-CA----------AAAA-TCAATTC--AACTTTC--T--T--TA---TAAC-ACC-GCGGTGGTAAA-C------TA---AT---GTGGA-T--TC-TCA--AATGAAAA-AAAGAAGAATTTTTGTCCGCTTGCTGCTGGAgtata
gi|2 : -TATGA------TAT-T--TGA--AAGCTACAG-CGTGCTTA---A-T-TACTAACCATGCATATTAAGG-CATAATGTAGCCT-TTT-ATTTA-T-TACATTTA---T-G---T--TAT-TGTT-CA--AT--ATAC-TTTTGA-ATTCCCCTGTAC-ATT-TG--A--------TCAAACTTGTA---------------TGT---AGATTTTGATCTA-TT--C-TCCTGAACGT--------AATG-------------CCATTTAATT-----TGTGTGTGAAA---ATCATGCC---------CCATT--TGA--TTGCGTAAT--AAAGAATCTTGTcaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagtatgatatttgaaagctacagcgtgcttaattactaaccatgcatattaaggcataatgtagccttttatttattacatttatgttattgttcaatatacttttgaattcccctgtacatttgatcaaacttgtatgtagattttgatctattctcctgaacgtaatgccatttaatttgtgtgtgaaaatcatgccccatttgattgcgtaataaagaatcttgt
gi|3 : gatggaattgaaaaatgaacttcataattttacttttattgtccaaaatataacattcgaaaaggttccaacttttaaaagtcatagcaaaaatcaattcaactttctttataacaccgcggtggtaaactaatgtggattctcaaatgaaaaaaagaagaatttttgtccgcttgctgctggacaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagA------AAGGGT-ACA-ACTAGTAGAG-----A-------------------A-T--ATATCAAACATT-CTT--T--CT---TAAC-ACCTGC--TGGAGAA--------TA---AT---GTGGA-T--TC-TCAATAATGAAAGTAAAGAAG---TTTTGT--GATTGCT--TGGAAGA-TTT--TTTTTGGAAAAT-TTAAAAGAA-CAAATTTAAGTATAAATATAT-ATAAT-TAC-A------TGTATACTGA--AAG-TACAG-CTTGCTTG--TAATTTACTG-CTATACATGT-AAGA-CATAATGT--------T-A-TT----TAT-TTTTAGAT-GCATT---ATTCATTACA--AT--------TTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TTAA---TGCA---------------TATGGCAG-TTTTG---TTCTTTATATACTGAAC-T--------AATGTT-T--------AAAA--TA--TACTACTGTGCGTAAAA------ATGCCTTCTGGGGGCC-CTTATAA--TTGATTGAT--AAAGAATCTTGT
gi|4 : gAGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACTGTTGACACC---TAAA-CTC-------AGCAT----------------TCTCTGC------A-ATTAAATATTGATGAATAGGGAGGATATTGCGACTG-TACATCACC-----TAAGTTAAGAGTATGCTTTCAA---TGTGATAT-ATGC-AGGGAGAGGA-CAAACATGCATA-ATTT-CTTT--TGGTTGTGTTTCCAAATAATATACTGGTC-AATATGGAGAGGTTTGCA-ATCAATAGAA-----A--AACT--T---TTTGATAA-TCGGTCT-AAA-TTTTCTT-----------------------TGTAAAA-C------TA---AT---ATGAA-TTCT--TAAATAATGAAAGTAAAGAAG----TTTAT--TTCTGCT--TGGAACA-TTCA-TTTT
gi|5 : tAACAATGAAAACAAAGAAG---CTTCGT--GCTTGCT--TGGAA-AATTTA-TTTTT-GAAAACAGTAAAAGAA-TAAAT--------------GT-TCAAT-TAT-ATACCGGTATAT--TGA--AAG-AACAG-CTTGCTTG--TA--ATACTA-CTATACATAT-AAAG-AATAATGTAGCCTGGTT-A-TTATT-TAT-TTTAAAGT-TCATT--TATACATG-TATGATTAA----CTTTGA-ATTTTCCTGTGC-ATT-TG-CATCAAATTTTCAA---TGTATACAAATG-------TATGACAG-TTTTG---TACCT--TATCCTGAAC-TATTGTTTAAATA---T--------AC----TA--T-----TGTGTGTTAAA---A-CATGCCTCCT-GGGGCC-CA--TGA--CATGTTAAT--AAAGAATCTTGTATC
gi|6 : ctTTGAAAACAGTAAAAAGAACAAA---------------ATGTTAATATAT-A------TAAAT--TGAGAAAG-TACAG-CTTGCTTGGTCA-TATA-----TATACATAT-AGGGGCATGCTGTAGCCTGTTTCA-TTA-TGTAT-TT-AACGTAGAATTATTATAGGTT-CA--AT--AGTAACTTTGAGAATTTCCTGTGCCATTATGGCA--------TTAA---TGTA---------------TATG-CA--CTTTG---TACT---CATCCTGAAC-T--------AATG---TTTA-----ATAA--TA--C-----CGT-------A---A-CCTGCCCTCT-GGA--C-CT--TGA--TTTGTTAAT--AAAGAAT
gi|7 : gtaGATCAAAG---AAG---AAGCTTGGC-AAAGCT-CAGAATATCTTCAC-A-CAAGTTGCATATTGA--GTCAGGTAG-ATAC-----CAGCTAGGGTACCCCCACTGAACTTTGAATATG---TCAGAATTGTAA-CTGGTGA-AGTA-GAGGA-TGAAA-TACATT-TTTTGTTTTGCTG----TG----TAAATA---TAA-AGCC-AG------AACG---AGA-ACCTTTACAG-----A--G-CATTT---C---AATA-TCATGTACTAACTT---CT--T--TA---T-----CG-GC--TGAAatactctcctgtagtata
gi|8 : tttgataagtaatttt-CTGAATTTAAATTTTGCTCTCAG---TACAATCTAA----AG---GGGGA-TAAA------TG-TCTTAGTTT---G----TCCCTT---ATA---TAACTTTT-AA------AAGGTT-ATGTAATACTGGAG-----ATTA-TA--T---C---AAAAATGAAGTT-AAACTTTTCTT--T--TA---TAACAACT-GC--TGAGAAA-CTACGCATA---AT---GTGGA-T--T--T
gi|9 : -ATTTGCTTGTGT-ATT-TG-CA--------TTAT---TGTA---------------TAGGACAG-TTTTG---TACTT--CATCCTAAAC-T--------AATGTTTT--------ATAC--TA--T-----TGTATGTAAAA------ATGACTTCT-GGGGCC-CT--TGATGTTGG-TGATA-AAAGAATCTTGTtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAAGTTTCCCAACCCTATTTACCAATGTACATTGTAGTCTGTTTTGAACTACTGTTTAAATAAAGCTTTGTATTTCAAACTGCCTTCCAGGGCC
Alignments
lowQualScore : 1 11 44444444444 99999999999999999999999999999999999999999999999 11 3333333333 1111 111 11 111 11 333333333333333 1111 11 111111 3333333333333333333333 11 1 11111111 11 1 11 1 666666666666666 1 222222 11 11 3333333 1111 111 55555555555 22222222 111 555555555555555 11 111 22222222 555555555555555555 11111111 22222 11
lowQualScore : 5 1 88 1 33333333333 1 1 1 6 55555555555555555555555555555555555555555555555 88 1 6 6666666666 1 3333 1 1 2 0 777 33 3 0 11 777 8 33 3 99 3 555555555555555 4444 3 11 666666 3 5 3 5 11 9999999999999999999999 8 66 1 7777777777 4 6 55 66666666 777 777 4 66 99 888 66 66 3 6 33 9 3 6 0 222222222222222 0 8 8 333333 0 11 11 8 8 1111111 3 8 8 8 6 55 8 8 2222 8 0 44 8 5 111 77 8 00000000000 5 5 5 5 00000000 000 666666666666666 3 00 000 77 5 00000000 888888888888888888 77777777 0 0 00000 5 5 66 77 1 33
lowQualScore : . . .. . ........... . . . . ............................................... .. . . .......... . .... . . . . ... .. . . .. ... . .. . .. . ............... .... . .. ...... . . . . .. ...................... . .. . .......... . . .. ........ ... ... . .. .. ... .. .. . . .. . . . . ............... . . . ...... . .. .. . . ....... . . . . . .. . . .... . . .. . . ... .. . ........... . . . . ........ ... ............... . .. ... .. . ........ .................. ........ . . ..... . . .. .. . ..
lowQualScore : 5 0 55 0 55555555555 0 0 0 7 77777777777777777777777777777777777777777777777 33 0 7 0000000000 0 3333 2 2 5 2 555 55 2 8 22 444 0 00 8 00 8 888888888888888 8888 2 22 444444 6 7 0 7 33 5555555555555555555555 0 44 3 2222222222 0 0 55 33333333 888 888 4 11 44 888 99 99 3 7 22 2 2 5 0 000000000000000 0 0 0 000000 8 00 00 0 0 0000000 2 0 0 0 0 66 0 0 6666 0 8 00 0 0 888 44 0 44444444444 7 7 7 7 77777777 000 444444444444444 6 00 000 99 7 77777777 444444444444444444 44444444 7 3 77777 0 0 99 99 4 66
consensus : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-AGTN-GAGGA-TGAAC-TNCATN-TTTTACTTT--TG----TGCTTCNAAATA---TAACAGTC-AA------AAGGTT-ACA-ACTNTTAGAG-----A--G-CA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-C------TA---AT---GTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CA--AT--A----CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
Reference ( family-879 ) : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-AGTN-GAGGA-TGAAC-TNCATN-TTTTACTTT--TG----TGCTTCNAAATA---TAACAGTC-AA------AAGGTT-ACA-ACTNTTAGAG-----A--G-CA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-C------TA---AT---GTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CA--AT--A----CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
gi|1 : AGCAA-TGGCAAATT--AAGAACTTGCGTTAAATTAAAAAAAAAAATTGTGGAAGAGAACACTATCTCATTAATAACATTGATCAGAGCTCGAGGAAAAGCATAATTAA-GCTTCGC-ATCTCGGC-CCATCA-GCTAAATATTGA--AAAAGGGAAGATAC----ACAG---GACTTCCCCC-CTGAACTTAGAATGTGCTCTCAG---TGCGATTTGATGGCAGTT-GAAGA-TGAAC-TTCATT-TTTTACTTT--T-----TGCTTCAAAAT----TAACAGT--AA------AAGGCT-A-A-ACTTTTAGAA-----G--G-TA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-T------TA---AT---GTGGA-T--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTATTTTTTTGAAAACAGTAAAA-GA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAGCCTTGCTTT--AA-AATATTA-CTAAACATAT-AATG-CATAATGTTACCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATATGTT-CA------A----CTTTGA-ATTTCCCTGTAC-ATT-TG-CA--------TTAA---TGTA---------------TATGACAC-TCTTG---TACTT--CACCCTGAAC-T--------AATG---T--------ACCA--TA--T-----TGTGT-TAAAAAAGA-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATATTCTATCTT
gi|10 : acTGA-ATTTTCCTGTAT-ATT-TG-CA--------TCAA---TGTACATTGACACCCGGAATATGACAC-TTCTG---TACCT--CATCCTGATC-T--------AATG---TTTAAATATACT---TA--C-----TGTGTGTAAAA---A-CATGCCTTCT-GAGGCC-CT--Tt
gi|11 : A------AAGATT-ACA-ACTTTTAGAA-----A--G-TA--TATCT---AAAA-TCA-TTT-----TTTTCTTCTT--TA---TAAC-ACCTGC--TGAAAAA-C------TA---ATTATGTGGA-T--TC-TCAACAATGAAAACAAAGAA
gi|12 : tatA--T---C---AAAAATCAATT-CAAACTTTTCTT--T--GA---TAAC-ACCCGC--TGAAAAAAT------TA---AT---GTGGAAT--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-
gi|13 : ---AGAA-TAAATT-CAAAATTTCCTT--T--TAAAATAAC-ACCTGC--TGAAAAA-C------TAGAAAT---GTGGC-C--TGTTTAATAATGAAAGCAAAGGAA---TTTTTA--GTTTGTT--TGa
gi|15 : --T---C---AAAA-GCAAATCCAA-CTTTTCTT--TATTA----AAT-TCT-GC--TGGAAAA-C------T----------------------CAATAATGAAAGCAAAGAA----TTTTGA--GTCTGCT--TGGAA-A-cat
gi|16 : aatGTCTTCT-GGGGCC-CT--TAA--TTGGTTAATAAAAAGAATTTTGTATCTT
gi|2 : GATGG-AATT-GAAAAATGAAC-TTCATAATTTTACTTT--TA----TTGTCCAAAATA---TAACATTCGAA------AAGGTT-CCA-ACTTTTAAAAGTCATA--G-CA----------AAAA-TCAATTC--AACTTTC--T--T--TA---TAAC-ACC-GCGGTGGTAAA-C------TA---AT---GTGGA-T--TC-TCA--AATGAAAA-AAAGAAGAATTTTTGTCCGCTTGCTGCTGGAgtata
gi|2 : -TATGA------TAT-T--TGA--AAGCTACAG-CGTGCTTA---A-T-TACTAACCATGCATATTAAGG-CATAATGTAGCCT-TTT-ATTTA-T-TACATTTA---T-G---T--TAT-TGTT-CA--AT--ATAC-TTTTGA-ATTCCCCTGTAC-ATT-TG--A--------TCAAACTTGTA---------------TGT---AGATTTTGATCTA-TT--C-TCCTGAACGT--------AATG-------------CCATTTAATT-----TGTGTGTGAAA---ATCATGCC---------CCATT--TGA--TTGCGTAAT--AAAGAATCTTGTcaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagtatgatatttgaaagctacagcgtgcttaattactaaccatgcatattaaggcataatgtagccttttatttattacatttatgttattgttcaatatacttttgaattcccctgtacatttgatcaaacttgtatgtagattttgatctattctcctgaacgtaatgccatttaatttgtgtgtgaaaatcatgccccatttgattgcgtaataaagaatcttgt
gi|3 : gatggaattgaaaaatgaacttcataattttacttttattgtccaaaatataacattcgaaaaggttccaacttttaaaagtcatagcaaaaatcaattcaactttctttataacaccgcggtggtaaactaatgtggattctcaaatgaaaaaaagaagaatttttgtccgcttgctgctggacaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagA------AAGGGT-ACA-ACTAGTAGAG-----A-------------------A-T--ATATCAAACATT-CTT--T--CT---TAAC-ACCTGC--TGGAGAA--------TA---AT---GTGGA-T--TC-TCAATAATGAAAGTAAAGAAG---TTTTGT--GATTGCT--TGGAAGA-TTT--TTTTTGGAAAAT-TTAAAAGAA-CAAATTTAAGTATAAATATAT-ATAAT-TAC-A------TGTATACTGA--AAG-TACAG-CTTGCTTG--TAATTTACTG-CTATACATGT-AAGA-CATAATGT--------T-A-TT----TAT-TTTTAGAT-GCATT---ATTCATTACA--AT--------TTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TTAA---TGCA---------------TATGGCAG-TTTTG---TTCTTTATATACTGAAC-T--------AATGTT-T--------AAAA--TA--TACTACTGTGCGTAAAA------ATGCCTTCTGGGGGCC-CTTATAA--TTGATTGAT--AAAGAATCTTGT
gi|4 : gAGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACTGTTGACACC---TAAA-CTC-------AGCAT----------------TCTCTGC------A-ATTAAATATTGATGAATAGGGAGGATATTGCGACTG-TACATCACC-----TAAGTTAAGAGTATGCTTTCAA---TGTGATAT-ATGC-AGGGAGAGGA-CAAACATGCATA-ATTT-CTTT--TGGTTGTGTTTCCAAATAATATACTGGTC-AATATGGAGAGGTTTGCA-ATCAATAGAA-----A--AACT--T---TTTGATAA-TCGGTCT-AAA-TTTTCTT-----------------------TGTAAAA-C------TA---AT---ATGAA-TTCT--TAAATAATGAAAGTAAAGAAG----TTTAT--TTCTGCT--TGGAACA-TTCA-TTTT
gi|5 : tAACAATGAAAACAAAGAAG---CTTCGT--GCTTGCT--TGGAA-AATTTA-TTTTT-GAAAACAGTAAAAGAA-TAAAT--------------GT-TCAAT-TAT-ATACCGGTATAT--TGA--AAG-AACAG-CTTGCTTG--TA--ATACTA-CTATACATAT-AAAG-AATAATGTAGCCTGGTT-A-TTATT-TAT-TTTAAAGT-TCATT--TATACATG-TATGATTAA----CTTTGA-ATTTTCCTGTGC-ATT-TG-CATCAAATTTTCAA---TGTATACAAATG-------TATGACAG-TTTTG---TACCT--TATCCTGAAC-TATTGTTTAAATA---T--------AC----TA--T-----TGTGTGTTAAA---A-CATGCCTCCT-GGGGCC-CA--TGA--CATGTTAAT--AAAGAATCTTGTATC
gi|6 : ctTTGAAAACAGTAAAAAGAACAAA---------------ATGTTAATATAT-A------TAAAT--TGAGAAAG-TACAG-CTTGCTTGGTCA-TATA-----TATACATAT-AGGGGCATGCTGTAGCCTGTTTCA-TTA-TGTAT-TT-AACGTAGAATTATTATAGGTT-CA--AT--AGTAACTTTGAGAATTTCCTGTGCCATTATGGCA--------TTAA---TGTA---------------TATG-CA--CTTTG---TACT---CATCCTGAAC-T--------AATG---TTTA-----ATAA--TA--C-----CGT-------A---A-CCTGCCCTCT-GGA--C-CT--TGA--TTTGTTAAT--AAAGAAT
gi|7 : gtaGATCAAAG---AAG---AAGCTTGGC-AAAGCT-CAGAATATCTTCAC-A-CAAGTTGCATATTGA--GTCAGGTAG-ATAC-----CAGCTAGGGTACCCCCACTGAACTTTGAATATG---TCAGAATTGTAA-CTGGTGA-AGTA-GAGGA-TGAAA-TACATT-TTTTGTTTTGCTG----TG----TAAATA---TAA-AGCC-AG------AACG---AGA-ACCTTTACAG-----A--G-CATTT---C---AATA-TCATGTACTAACTT---CT--T--TA---T-----CG-GC--TGAAatactctcctgtagtata
gi|8 : tttgataagtaatttt-CTGAATTTAAATTTTGCTCTCAG---TACAATCTAA----AG---GGGGA-TAAA------TG-TCTTAGTTT---G----TCCCTT---ATA---TAACTTTT-AA------AAGGTT-ATGTAATACTGGAG-----ATTA-TA--T---C---AAAAATGAAGTT-AAACTTTTCTT--T--TA---TAACAACT-GC--TGAGAAA-CTACGCATA---AT---GTGGA-T--T--T
gi|9 : -ATTTGCTTGTGT-ATT-TG-CA--------TTAT---TGTA---------------TAGGACAG-TTTTG---TACTT--CATCCTAAAC-T--------AATGTTTT--------ATAC--TA--T-----TGTATGTAAAA------ATGACTTCT-GGGGCC-CT--TGATGTTGG-TGATA-AAAGAATCTTGTtt
blockSeqs : A G TT C C T T T G GAAGAAGCTTGGCAAAGCTCAGAATATCTTCACACAA TG T G TGCGACTGT T CCCA G A C AAT TA G G GGA A CA T AA A TGGTTGTGTTTCC AATA C CG TATGGA T T C T TT AAACTTTTTG A CC T TTAAAA A T GG CTACGCA GAA TAT A TC GT AAT CC GC G A A G A G A TTTAAGTATAAATAT G A G TACCGG AC GA C . GTCATA C A T G A GG C T ATT A AG A C ATT TC A TGATTAA G C A G TCAAATTT ACT CATTGACACCCGGAA A GA ATC TA G ATTGTTTA TTTAAATATACT TACTAC AT G A TA TG T AA
blockSeqs : . CTCAGCATTCTCTGCA . C . CAGCT G . A A C . TC G C TT . C G A G TATTGTCCA A T C . T . C . TT AGTATATCT A TC T CTTTA . C . AT . . . . C . . . C . A T A G . T . . . . . . . . TAATT C . . . A GT . . ATG . AA . C T AC . ATAGTAA . . . . . . TACAAATG G C . . . . TTTAATAA ATT A . . . . G A
blockSeqs : T T . . C A A TA . A A T A GCTGTGT A C C . G . C . AG GTCATAGCA . AC C TATTA . T . C . . . . C . . . . . . . . A . . . . . . . . . . TAA C . . . A T . . AT . AC . A T AG . ATATAC . . . . . . . A G . . . . TTTTATAC C A . . . . T .
blockSeqs : . . . . . . G . GTCCCTT A . T . T . C . AA AGCATTTC . T T TGA . T . C . . . . C . . . . . . . . . . . . AT . . . . . . . . . . . . . . T . AT . . . . . . . A G . . . . TTTAAAA T A . . . . T .
blockSeqs : . T . G . TT ATTATATC . C C TTA . . . C . . . . . . . . . . . . . . . . . . G . . . . CCATT C . . . . . T .
blockSeqs : . . . T . AC A . C T TCT . . . C . . . . . . . . . . . . . . . . . . . . . TAC T . . . . . . .
blockSeqs : . C T TTA . . . C . . . . . . . . . . .
blockSeqs : . T . TTA . . . . . . . . .
blockSeqs : . T . . . . .
blockSeqCons : N* GTTCGTCC******* A*** C* ANCATATC************** C* TA***** AT** ATATA****** TTTAATAN********** A****
originalCons : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-AGTN-GAGGA-TGAAC-TNCATN-TTTTACTTT--TG----TGCTTCNAAATA---TAACAGTC-AA------AAGGTT-ACA-ACTNTTAGAG-----A--G-CA--T---C---AAAA-TCAATTTCAAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-C------TA---AT---GTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA-TATACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CA--AT--A----CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATG---T--------ACNA--TA--T-----TGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
finalCons : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGN-AGTN-GAGGA-TGAAC-TNCATN-TTTTACTTTGTTCGTCC-------AAATA---TAACAGTC-AA------AAGGTT-ACA-ACTNTTAGAGANCATATC--------------AAAA-TCAATTC-AAACTTTTCTT--T--TA---TAAC-ACC-GC--TGAAAAA-C------TA---AT---GTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTGTA-----TACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTAT--TAT-TTTAAGGT-GCATT--TATACGTT-CAATATA------CTTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-T--------AATGTTTAATAN----------TA--T-----TGTGTGTAAAAA----CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAAGTTTCCCAACCCTATTTACCAATGTACATTGTAGTCTGTTTTGAACTACTGTTTAAATAAAGCTTTGTATTTCAAACTGCCTTCCAGGGCC
Alignments
lowQualScore : 1 11 44444444444 99999999999999999999999999999999999999999999999 11 3333333333 1 111 1111111 11 333333333333333 111111111 1 111111111 1 1111111111111 11 1 11 1 666666666666666 1 222222 11 11 44444444444 1111 111 33333333333 11111111 444444444444444 11 2222222222222222222 11111 11
lowQualScore : 5 1 88 1 33333333333 1 1 1 6 55555555555555555555555555555555555555555555555 88 1 6 6666666666 1 6 0 1 1 2 0 777 33 3 0 3333333 8 33 3 99 1 333333333333333 8 0 3 888888888 99 3 5 11 5 55 4 4 2 55 777777 55 222222222 4 6 55 9999999999999 4 66 99 888 66 66 3 6 33 9 3 6 0 222222222222222 0 8 8 333333 0 11 11 8 8 55555555555 3 8 8 8 6 55 8 8 2222 8 0 44 8 5 111 77 8 88888888888 5 5 5 5 88888888 888 999999999999999 77 00 888 66 5 888 9999999999999999999 0 2 5 77777 0 4 4 66 77 1 33
lowQualScore : . . .. . ........... . . . . ............................................... .. . . .......... . . . . . . . ... .. . . ....... . .. . .. . ............... . . . ......... .. . . .. . .. . . . .. ...... .. ......... . . .. ............. . .. .. ... .. .. . . .. . . . . ............... . . . ...... . .. .. . . ........... . . . . . .. . . .... . . .. . . ... .. . ........... . . . . ........ ... ............... .. .. ... .. . ... ................... . . . ..... . . . .. .. . ..
lowQualScore : 5 0 55 0 55555555555 0 0 0 7 77777777777777777777777777777777777777777777777 33 0 7 0000000000 0 7 0 2 2 5 2 555 55 2 8 4444444 0 00 8 00 4 444444444444444 0 8 2 666666666 33 0 7 33 7 00 0 0 0 55 000000 55 999999999 0 0 55 3333333333333 4 11 44 888 99 99 3 7 22 2 2 5 0 000000000000000 0 0 0 000000 8 00 00 0 0 66666666666 2 0 0 0 0 66 0 0 6666 0 8 00 0 0 888 44 0 66666666666 7 0 0 0 11111111 888 444444444444444 55 66 888 99 0 888 5555555555555555555 2 5 2 00000 1 4 4 99 99 4 66
consensus : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGG-A-GTNGAGGA-TGAAC-TNCATN-TTTTACTTTGNTCG----TCCA---AA-TATAACAGTC-A------AAAGG-TTACA-ACTNTTAG-AGAGCATATC-AA-AA-TCA-ATT-CAAACTTTTCT--TT--TA---TAAC-ACC-GC--TGAAAAA-C------TA---ATGTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--TA--A---TACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CAATA-T--A-C-TTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-TAATG---TTTA----A---TACT-A-----TTGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
Reference ( family-879 ) : NNAGCAAATGGNAAATTTTAAGAACTTGCGCTANATTNAAAAAAAAAACTNCGGAAGNGAGCACTATCTCACTGNTGACACCGATCAAAGCTCGAG---AAGCATGGC-AA-GCT-CG--ATCTCTGC-C-A-CA-GTTAAATATTGA--AANAGGGAGGATAC----ACAG-TAGANTACCCCC-CTGAACTTAGAATATGCTCTCAG---TGCGATCTGATGN-A-GTNGAGGA-TGAAC-TNCATN-TTTTACTTTGTTCG----TCCA---AA-TATAACAGTC-A------AAAGG-TTACA-ACTNTTAG-AGANCATATC-AA-AA-TCA-ATT-CAAACTTTTCT--TT--TA---TAAC-ACC-GC--TGAAAAA-C------TA---ATGTGGA-T--T--TCAACAATGAAAGCAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTA-TTTTTTGAAAACAGTAAAAGGA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAG-CTTGCTTG--T---A---TACTA-CTATACATAT-AAGG-CATAATGTAGCCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATACGTT-CAATA-T--A-C-TTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TCAA---TGTA---------------TATGACAG-TTTTG---TACTT--CATCCTGAAC-TAATG---TTTA----A---TANT-A-----TTGTGTGTAAAA---A-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATCTTGTATCTT
gi|1 : AGCAA-TGGCAAATT--AAGAACTTGCGTTAAATTAAAAAAAAAAATTGTGGAAGAGAACACTATCTCATTAATAACATTGATCAGAGCTCGAGGAAAAGCATAATTAA-GCTTCGC-ATCTCGGC-CCATCA-GCTAAATATTGA--AAAAGGGAAGATAC----ACAG---GACTTCCCCC-CTGAACTTAGAATGTGCTCTCAG---TGCGATTTGATGGCA-GTTGAAGA-TGAAC-TTCATT-TTTTACTTTTTGCT----TCAA---AA-T-TAACAGT--A------AAAGG-CTA-A-ACTTTTAG-AAGG--TATC-AA-AA-TCA-ATTTCAAACTTTTCT--TT--TA---TAAC-ACC-GC--TGAAAAA-T------TA---ATGTGGA-T--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-TTTATTTTTTTGAAAACAGTAAAA-GA-CAAAT--------------AT-TTAAT-TAT-A------TATAT--TGA--AAG-TACAGCCTTGCTT---TAAAA---TATTA-CTAAACATAT-AATG-CATAATGTTACCTGTTT-A-TTA-T-TAT-TTTAAGGT-GCATT--TATATGTT-CA-------A-C-TTTGA-ATTTCCCTGTAC-ATT-TG-CA--------TTAA---TGTA---------------TATGACAC-TCTTG---TACTT--CACCCTGAAC-TAATG---T-------A---CCAT-A-----TTGTGT-TAAAAAAGA-CATGCCTTCT-GGGGCC-CT--TGA--TTGGTTAAT--AAAGAATATTCTATCTT
gi|10 : acTGA-ATTTTCCTGTAT-ATT-TG-CA--------TCAA---TGTACATTGACACCCGGAATATGACAC-TTCTG---TACCT--CATCCTGATC-TAATG---TTTA----AATATACTTA-----CTGTGTGTAAAA---A-CATGCCTTCT-GAGGCC-CT--Tt
gi|11 : ------AAAGA-TTACA-ACTTTTAG-AAAGTATATCTAA-AA-TCA-TTT------TTTTCTTCTT--TA---TAAC-ACCTGC--TGAAAAA-C------TAATTATGTGGA-T--TC-TCAACAATGAAAACAAAGAA
gi|12 : tatATC-AA-AAATCA-ATT-CAAACTTTTCT--TT--GA---TAAC-ACCCGC--TGAAAAAAT------TA---ATGTGGAAT--T--TCCACAATGAAGACAAAGAAG---TTTTGT--GCTTGCT--TGGAA-A-
gi|13 : -AG-AA-TAA-ATT-CAAAATTTCCT--TT--TAAAATAAC-ACCTGC--TGAAAAA-C------TAGAAATGTGGC-C--TGTTTAATAATGAAAGCAAAGGAA---TTTTTA--GTTTGTT--TGa
gi|14 : -ATT-TA-C----------CAA---TGTA---------------CAT---------TG---TAGTC--TGTTTTGAAC-TACTG---TTTA---------AAT-AAAGCTTTGTATTT-CAA---A-C-TGCCTTCC-AGGGCC-cat
gi|15 : tcaagtttcccaaccctTC-AA-AA-GCA-AAT-CCAACTTTTCT--TTATTA----AAT-TCT-GC--TGGAAAA-C------T-------------------CAATAATGAAAGCAAAGAA----TTTTGA--GTCTGCT--TGGAA-A-
gi|16 : aatGTCTTCT-GGGGCC-CT--TAA--TTGGTTAATAAAAAGAATTTTGTATCTT
gi|2 : GATGG-A-ATTGAAAAATGAAC-TTCATAATTTTACTTTTATTG----TCCA---AAATATAACATTCGA------AAAGG-TTCCA-ACTTTTAA-AAGTCATAGC-AA-AAATCA-ATT-CAA--CTTTCT--TT---A---TAAC-ACC-GCGGTGGTAAA-C------TA---ATGTGGA-T--TC-TCA--AATGAAAA-AAAGAAGAATTTTTGTCCGCTTGCTGCTGGAgtata
gi|2 : -TATGA------TAT-T--TGA--AAGCTACAG-CGTGCTTA--A---T---TACTAACCATGCATATTAAGG-CATAATGTAGCCT-TTT-ATTTA-T-TACATTTA---T-G---T--TAT-TGTT-CAATA-T--A-CTTTTGA-ATTCCCCTGTAC-ATT-TG--A--------TCAAACTTGTA---------------TGT---AGATTTTGATCTA-TT--C-TCCTGAACGTAATGCCATTTA----A---T----------TTGTGTGTGAAA---ATCATGCC---------CCATT--TGA--TTGCGTAAT--AAAGAATCTTGTcaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacagtatgatatttgaaagctacagcgtgcttaattactaaccatgcatattaaggcataatgtagccttttatttattacatttatgttattgttcaatatacttttgaattcccctgtacatttgatcaaacttgtatgtagattttgatctattctcctgaacgtaatgccatttaatttgtgtgtgaaaatcatgccccatttgattgcgtaataaagaatcttgt
gi|3 : gatggaattgaaaaatgaacttcataattttacttttattgtccaaaatataacattcgaaaaggttccaacttttaaaagtcatagcaaaaatcaattcaactttctttataacaccgcggtggtaaactaatgtggattctcaaatgaaaaaaagaagaatttttgtccgcttgctgctggacaaaataattctggtttattaatattgtacgccccatgtgactcagtaagcaactacaccaaattcaatatgaatggtgtggatttatatacag------AAAGG-GTACA-ACTAGTAG-AGAATATATC-AA-A---CA--TT-C-----TTTCT--T---------AAC-ACCTGC--TGGAGAA--------TA---ATGTGGA-T--TC-TCAATAATGAAAGTAAAGAAG---TTTTGT--GATTGCT--TGGAAGA-TTT--TTTTTGGAAAAT-TTAAAAGAA-CAAATTTAAGTATAAATATAT-ATAAT-TAC-A------TGTATACTGA--AAG-TACAG-CTTGCTTG--T---AATTTACTG-CTATACATGT-AAGA-CATAATGT--------T-A-TT----TAT-TTTTAGAT-GCATT---ATTCATTACAAT---------TTTGA-ATTTTCCTGTGC-ATT-TG-CA--------TTAA---TGCA---------------TATGGCAG-TTTTG---TTCTTTATATACTGAAC-TAATG---TTTAAAATA---TACT-A-----CTGTGCGTAAAA------ATGCCTTCTGGGGGCC-CTTATAA--TTGATTGAT--AAAGAATCTTGT
gi|4 : gAGCAAATGGGAAATTTTAAGAATTTGTGCTACATTC----------CTTCGGAAGTGAGCACTATCTCACTGTTGACACC---TAAA-CTC-------AGCAT----------------TCTCTGC------A-ATTAAATATTGATGAATAGGGAGGATATTGCGACTG-TACATCA----C-CTAAGTTAAGAGTATGCTTTCAA---TGTGATAT-ATGC-AGGGAGAGGA-CAAACATGCATA-ATTTCTTTTGGTTGTGTTTCCAAATAA-TATACTGGTC-AATATGGAGAGGTTTGCA-ATCAATAGAAAAACTTTTT-GATAA-TCG-GTC-TAAA-TTTTCT--T---------------------TGTAAAA-C------TA---ATATGAA-TTCT--TAAATAATGAAAGTAAAGAAG----TTTAT--TTCTGCT--TGGAACA-TTCA-TTTT
gi|5 : tAACAATGAAAACAAAGAAG---CTTCGT--GCTTGCT--TGGAA-AATTTA-TTTTT-GAAAACAGTAAAAGAA-TAAAT--------------GT-TCAAT-TAT-ATACCGGTATAT--TGA--AAG-AACAG-CTTGCTTG--TA--A---TACTA-CTATACATAT-AAAG-AATAATGTAGCCTGGTT-A-TTATT-TAT-TTTAAAGT-TCATT--TATACATG-TATGA-TTAA-C-TTTGA-ATTTTCCTGTGC-ATT-TG-CATCAAATTTTCAA---TGTATACAAATG-------TATGACAG-TTTTG---TACCT--TATCCTGAAC-TATTG---TTTAAAT-A---TACT-A-----TTGTGTGTTAAA---A-CATGCCTCCT-GGGGCC-CA--TGA--CATGTTAAT--AAAGAATCTTGTATC
gi|6 : ctTTGAAAACAGTAAAAAGAACAAA---------------ATGTTAATATAT-A------TAAAT--TGAGAAAG-TACAG-CTTGCTTGGTC---A---TA-TA--TATACATAT-AGGGGCATGCTGTAGCCTGTTTCA-TTA-TGTAT-TT-AACGTAGAATTATTATAGGTT-CAATAGT--AAC-TTTGAGAATTTCCTGTGCCATTATGGCA--------TTAA---TGTA---------------TATG-CA--CTTTG---TACT---CATCCTGAAC-TAATG---TTTA----A---TAAT-A-----CCGT-------A---A-CCTGCCCTCT-GGA--C-CT--TGA--TTTGTTAAT--AAAGAAT
gi|7 : gtaGATCAAAG---AAG---AAGCTTGGC-AAAGCT-CAGAATATCTTCAC-A-CAAGTTGCATATTGA--GTCAGGTAG-ATAC-----CAGCTAGGGTACCCCCACTGAACTTTGAATATG---TCAGAATTGTAA-CTGGTGA-A-GTAGAGGA-TGAAA-TACATT-TTTTGTTTTGCT-G----TGTA---AA-TATAA-AGCC-A------GAACG---AGA-ACCTTTAC-AGAGCATTTC-AA-TA-TCATGTA-CTAACTT---C--TT--TA---T-----CG-GC--TGAAatactctcctgtagtata
gi|8 : tttgataagtaatttt-CTGAATTTAAATTTTGCTCTCAG---TACAATCTAA----A-G--GGGGA-TAAA------TG-TCTTAGTTTGTCCC----TT------A-TATAACTTTT-A------AAAGG-TTATGTAATACTGG-AGATTATATC-AA-AAATGA-AGT-TAAACTTTTCT--TT--TA---TAACAACT-GC--TGAGAAA-CTACGCATA---ATGTGGA-T--T--T
gi|9 : -ATTTGCTTGTGT-ATT-TG-CA--------TTAT---TGTA---------------TAGGACAG-TTTTG---TACTT--CATCCTAAAC-TAATG---TTTT----A---TACT-A-----TTGTATGTAAAA------ATGACTTCT-GGGGCC-CT--TGATGTTGG-TGATA-AAAGAATCTTGTtt