lowQualScore : 4444444444444444444444444444444444444444444444444444
lowQualScore : 55 4 444 55555 8888888888888888888888888888888888888888888888888888 2 2 8888888888888888 44 88888888888 11 4 1 7777777777777 1 4 1 22 555 3333333 4 11 33333 1 44444 11 1 2222 11 2222222 1 333333 222 444444444 1 11 33333 333333 3333333 11 2222222222222 1 2222 111 111 1111 11 3333333 22222 111 6666666666666 44444444444444444 11111 1 22222 1 1111111 1111 2222222 333333333333333 11 1111 2222222 444444 11 1111 11 111 11111 1111 11 1 1 2 2222222222222 1 11 11111111 1111 11 999999999999999 1 1 1 1 1 1
lowQualScore : 55 6 0 6 888 55555 1111111111111111111111111111111111111111111111111111 6 1 3 0 6 7777777777777777 55 6 7 7 6 1 00000000000 1 0 88 1 0 3 8888888888888 5 0 7 3 88 000 0 5555555 6 0 88 55555 0 77777 22 33 3 9 1111 33 6666666 0 222222 2 8 333 9999 666666666 7 6 5 11 22222 0 333333 2 0000000 22 4 5 5 0 1111111111111 8 8 5 7 9999 5 77 444 333 2222 5 77 7 77 77 77 22 5 77 2222222 4 2 3 44444 66 999 8888888888888 66 5 11111111111111111 44444 5 2 0 00000 77 5 3 5 5 4 2 5 5 8888888 5 5 55 77 1111 4444444 999999999999999 5 66 55 0000 1111111 5 5 000000 6 55 6 6 6 6 6 6666 99 6 99 99 88 6 99 111 77777 3 4444 33 7 3 3 7 0 8888888888888 0 00 99999999 4444 88 333333333333333 7 0 6 3 3 3 3 6 3
lowQualScore : .. . . . ... ..... .................................................... . . . . . ................ .. . . . . . ........... . . .. . . . ............. . . . . .. ... . ....... . . .. ..... . ..... .. .. . . .... .. ....... . ...... . . ... .... ......... . . . .. ..... . ...... . ....... .. . . . . ............. . . . . .... . .. ... ... .... . .. . .. .. .. .. . .. ....... . . . ..... .. ... ............. .. . ................. ..... . . . ..... .. . . . . . . . . ....... . . .. .. .... ....... ............... . .. .. .... ....... . . ...... . .. . . . . . .... .. . .. .. .. . .. ... ..... . .... .. . . . . . ............. . .. ........ .... .. ............... . . . . . . . . .
lowQualScore : 00 0 0 0 000 00000 0000000000000000000000000000000000000000000000000000 0 0 7 7 7 0000000000000000 00 0 3 3 0 0 77777777777 0 7 33 0 0 3 0000000000000 0 0 3 3 33 000 7 3333333 0 0 33 00000 5 55555 88 88 2 0 2222 88 0000000 0 222222 5 0 000 5555 555555555 5 7 0 00 66666 8 555555 5 8888888 33 3 7 7 7 1111111111111 4 7 7 1 3333 7 99 444 000 1111 7 99 9 99 99 99 11 7 11 0000000 2 1 2 88888 99 555 1111111111111 99 0 66666666666666666 33333 7 7 1 77777 11 7 0 7 7 3 0 7 7 6666666 0 7 99 99 4444 3333333 999999999999999 7 44 99 6666 2222222 0 1 333333 7 88 7 7 7 7 7 5555 22 7 22 22 33 7 22 777 22222 5 5555 88 3 3 3 3 0 0000000000000 0 22 55555555 8888 33 000000000000000 3 0 7 3 3 3 3 7 3
consensus : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGAATACATA-G-AGA----GGCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------NTTTCCTTT--GTATCACTTATG-TTATGAAAA-----------ATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATAGAAC-GTAAAC--AAAATT-----ACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAAT-CTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAACTG----TCCTC--AT----T--ACTGC-AAA---AA-CTGAA-TATTTGCTTCCT--TGAATATTTCCA---TACAACTCTGAAATATAA-ATTACAAG--AACACTACC--A-AAAACAAGA-AC-ACGAACAA-CTGAA-AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GNTTTTTATAGTAAAAATCGTAAA-TCAAAAA---TG-AA--TAC--AAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCT--GTGCTANCAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA-ATATTGAAACGGGG-----TAG-A--TA-TTCTAA--A-------------CCCC-----CC-ATTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTAT-T--ATATTG-TTC-------AAAGTATGA-A-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTTAA---TG-TAACAC-A--TATA-CTTGT-GA-T-GAC-CCAATN--NGGAAA--ATTGTT-AATCCTAC--AAATATTACAA--ATGCA--A-A--G---AACATGTT----TTTACTTGAAAACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT----AAGAGA---TATA-TT-GTACATCTTCANTGANT-TTATATATCTACATT--GATCTGTTTAA-TTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
Reference ( gi|1 ) : TAATAATT--TCTCAGC-GAAATTATGTTAAAATTAA-ATCAGTCCATTGAATATACCAATTATCACTATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTTTTGAAAAAACACAACATCTTATATTTAAAGACATAACTTGGAGTA-ATA-G-AAATTAAAGCATTCAAAT--TCGCTGTCTTGTATGGATTAGGG----------TTTTTCCTT--GTATTACT-ATG-TTATGAAAA-----------ATATCTTCAAAATACTACTTAAGATTGA-AAGAAATAGAATTGTAAA---AAGATT-----ATAACGAT-ATTTAGTGTTATCTGCATTTAAAGAAGATAAAAAT-CT--GTATCAAAAAATTTTCTTGGC--AAAAGGAAACTG----TCCTC--AT----T--ACTGC-AAA---A--CTGAA-TA-T-GCTTCCT--TGAATATTTCCAC--TACAACTCTGAAATATAA-ATGACAAA--AACACTACC--A-AAAACAAAATAC-ATGAACAATCTGAA-AATATAAGTAAATCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAA-TC-AAA----TG-AA--TAT--AAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAGAAATGTG-AT-AGGT-T--GTACTAACAAAATTAAG--A--TAAGTGCCCATCCATTG--TA-ATATTGAAAC--G------TA--A--TA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTAT-T--ATATTG-TTC-------AAAGTATGA-G-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTTAA---T--TAACAC-A--TATA-CTTGT-GA-T-GAC-CCAATA--AGGAAA--ATTGTT-AATCCTAC--AAATATTACAA--ATGCA--A-A--G---AACATGTT----TTTATTTGAAAATT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGT-AATGTT----AAAAGA---TATA-TT-GTACATCTTCAGTGAAT-TTATATATCTACATT--GATCTGTTT---TTTAATGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|7 : TAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGACATA-CTTGGAGTATATACGCAGA--AAGGCAT-CAAATC-TTGTTGTCTTGTATGAATTAGGGACTAAGGGTGCTTTCTTTT--GTATTACTTATG-TAATGAAAATACGGGTGAAAATATGTTCAAA-TACTATATAAGATTGA-AATAAATAGAAC-GTAAAC--AAGATTCAGTTGCAACAATTATTTTGTGTT-------------GAAGATAAAAATATT--GTATCTAAAA--TATCTTGAC--AAA-GGAAACTGCATGTCCTC--ATGCATT--ACTGCAAAA---A--CTGAA-TATT-GCTTCCT--
gi|2 : taaattATTTAAAGGCATAACTGGAAACC-ATA-A-GAG----AGCAT-CAAATCTTTGCTGTCT-G-ATGAATTGGGG----------GTTTTCCTTTTGTATCACTTATGCTTATGAAAA-----------A-ATGTTCAAA-TACTACTTAAGAT-GATAAGAAATACAAATGTAAACCAAAAGTT-----ACAACAATTATTTAGTGTCGTCTGCATTTAAAGGAAATGAAAAT-ATTCGTATCTAAAA--TATCTT-GCAAAAAAGAAAACTG----TCCTCTGAT----TAGACTGC-AAACAGA--CT-AA-TATT-GCTTCCT----AATA----------ATATCTCTGAAATAT-A-ATTACAAG--AACCCTACTCAA-AAAACAAGAAACAACGAA------GTA-AATACAAA-AAGTCAGA-CTG-TGGAA---CAA--TA-GGTTTTTAATGTAAATATCGTAAA-TCAAAA----TGAAA--TAC--AAATT---AACAAGAA-TT--ATTGGAGGCT--ACCTTTTT--ATAAAAATGTG-AT-AGATCT--GTGCCATCAAAATTAAGCCA--TTAATGGTCCTTCATTG--TA-ATATTGAACCAGG------TAG-A--TA-TTCTAA--A--------------CCC-----CC-ATT--CAAAGAAA--AC-GTCTTTTGCTTTTT-CAT-GTAGA-TG-T-T-A-------TTGAAGATGAGAAAC-ATTTTGTA--T--ATA-TG-TT---------AAATATGA-A-------------CAA-G-CA-GAT-GGCAGT----ATA-------ATG-A-CTATTTAATCGT--TAACACAA--TA-A-CTTGT-GA-T-GACTCCCATATTCGGAAAACATGGTT-AATCCTAC--AAATA-TACAA--ATGCAAGA-A--G---AACATGTT----TACATTTGAAAA
gi|4 : TTTAAAGGCATA-CTTGGAATACATA-G-AGA----GGCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGAG--------TTTTCCTTT--GTATCACTTATG-TTATGAAAA------------TATGTTCAAA-TACTACTTAAGATTGA-AAGAAATAGAAT-GTAAAC--AAAATT-----ACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAAT-CTT-GTATCTAAAA--TATCTTGGC--AAAAG-AAACTG----TCCTC--AT----T--ACTGC-AAA---AA-CTGAA-TA-TTGCTTCCTAATGAATA--------------CTCTGAAATATAA-ATTACAAG--AACACTACC--A-AAA-CAA--------GAACAA-CTGAAGAATACAAGTAAATCAGA-CTG-TGGAA---AA--TTA-GGTTTTTATAGTAAAA-TCGTAAA-TC-AAAA---TG-AA--TAC--AAATTAC-AAG----A-TT--ATTTGAGGCT--ACC--TTT--TAAAAAATGTG-AT-AGATCT--GTGCCATCAAAATTAAG--AA-TAAGTGTCCATTCATTG--TA--TATTGAAACAGG------TAG-A--TA-TTCTAA--A--------------CCC-----CC-ATTCCCAAAGAAA--AACGTC-TTTGC-TTTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTAT-T--ATATTG-TTC-------AAAGTATGA-A-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ACTTATTTAATG-T--TAACAC-A--TATA-CTTGT-GA-T-GAC-CCAATT--CGGAAA--ATGGTT-AATCCTAC--AAATATTACAA--ATGCAAGA-A--G---AACATG-------TTACTTGAAAA
gi|3 : AAAAAT-CTT-GTATCAAAA--TTTCTTTGTC--AAAAG-AAACTG----TCCTC--AT----T--ACTGC-AAA---AACTTGAACTA-T-TGTTCCT--T-AATATTTC-ACCATACAACTCTGAAATATAA-ATTAAAAAGAAACACTACC--CCAAAACAAAAC-C-ATGAACAACTGGAA-GATATAAGTAAATCGGAACTG-TGGAA---AA--TTA-G-TTTTTATAG--AAAATCGTAAA-TC-AAAA---TG-AA--TAT--AAACTGC-AAC----A-TT--TATTGAGGCT--ACC--TTT--AA-GAAATGTG-AGGAGGTCT--GTAC-AACAAA-TTAAG--AAATAAGTGCCCATCCAT-G--TA--TATTGAAAC--GGGA---TA--G--TA-TTCTAA--A-------------CCCC-----CCCACTCCCAAAGAAA--C--GTC-TTTGC-TGTTTCAT-GTAGATTGTT-TTA-------TTGAAGATGAAAAACCATTTTGTAT-T--ATATTG-TTC-------AAAGTATGAAG-------------CAATG-CA-GAT-GGCAGT----ATAT------ATG-ATTTATTTAA---TGTTAACAC-A--TATAACTTGTTGA-TTGAC-CCAATA--AGGAAA--ATTGTTTAATCCTAC--AAATATTACAA--ATGCA--A-A--G---AAGAACTG----TTTACTTGAAAACTTGTGT--TTTAAATTAAGAAAAG-AAAATCCAAGAGGTAAATGTT----AAGAGAGAGTATA-GT-GTAC-TCTTCAGTGATT-TTATATATCTACATTTGAATCTGTTTAA-TTT--TG-T--ACTGTACTTTTCATGGACTGCTATCGCT-AACA-T-GTATATTGTCAAT
gi|16 : A-TA-TTGCTTCCT--TGAATATTTCCACA-TACAACTCTGAAATATAA-a
gi|10 : TTCCT--TGAATAGTCCCA---TACA-CTCTGAAATATAATATTACAAA--CACACTAC-----AAAACAAGATAC-ATGAACAA-CTGAAGAATATAAGTAAGT-AGA-CTG-TG--A---AAA-TTA-G-TTTGTATAGT-AAAATCATAAACTCAAAA----TG-AA--TAC--AAACTG--AAC----A-TTAAATTT-AGGCTTAAC----TT--AAAAAAATGTGAAT-AGGT-
gi|6 : attgCCT--TGAATATTTCCCA--TACAACTCTGAAATATAA-ATTACAAG--AACACTACC----AAAACAA------GTGAAGAAT-------ATAT-----AATCAGA-ATG-GAGAATGGAGACTTT-GCTTTTTATAGT-AAAATCGTAAA-TCAAAA----TG-AA--TAC--AAATTGC-AAC----A-TT--ATTTGAGACT--ACT--TTTTAAAAAAAATGTG-AT-A-GT-TCAGTGTTAACAAAATTAAGA-A--TAAGTGTCCATTCAGTG--T--ATATTGAAAC--GGGTGGATAGGA--TA-TTCTAA--ACCAACCCTCCCCCCCCC-----CC-AATTCCAAAGAAA--GC-GTC-TTTGC-TGTT-CATGGTATATTGTT-T-A-------ATGAA-ATG-AAAAC-ATTTTGTAT-T--ATATT--TTCA------AAAGTATGA-A-------------CAATG-CA--AT--GCAGTAAGAATA-------ATG-A-TTGTTTAA---TG-TAACAC-AT-TATA-CTTGT-GA-T-GAC-CCAATT--AGG-AA--ATTG-T-AATCCTAC--AAACATTACAATGATG----A-A--G---AACATGTT----GATACTTGCAAACT--TGC--T
gi|8 : AAATAA-ACTAACAAATTGAA-AACACAA--AAGT-AAA-CTGGT-------AAA-TTATATTTTTTACAGTACTATTC-TAAA-----AACTGCTG-AAACTATCCAAATT-C-AAA----A-TC--AT------CT--AAC--TTT--AAC--AATTTC-A--AAAT-------CTATCAAGATTAAGG-A--TAAGTACACATCAGTTA--T--ATATTGAAACTGG------CAG-A--TA-TTGTAA--A-------------CCAC-----CT-ATTCCTAGAGAAAATAA-ATA--TTGT-TATC-CCT-GTACA-TGTA-T-AAATCTAGTCAAAGAAGAATTAC-ATTTTCTGT-TGAATACTGAATCTATAGAGAAAATATGA-AGATGTTTCTGTACTAATA-CA-TGT-AACAAT----ATATCAGTATATG-ATTTACTTAA---T--
gi|5 : gAAATCAGA-CTG-TGGAA---A---TT--GCTTATTATAGTAAAA-TCGTAAA-TC-AAAA---TG-AA--TA---AAACTGCGAAC----AATT--ATTT-AGGC---ACC--TTT--AAGAACATGTG-AT-AGGT-C--TT-CTAACAAA-TGAAG--A--TAATTGCC-ATCCATTG--TG-ATATTGAAAC--GGAG---TA--A--TACTTCTAACCA-------------CCCCCCCCCCC-ACT-CCAAAGAAA--AACGTC-TTTGC-TGTT-CAT-GTAGA-TGTTAT-A-------TTGAAGATG-AAAAC-A-TTTGTATAT--ATA-TG-TTC-------AAAGTATGA-G-------------CAATG-CA-GAT--GCAGT----GTA-------ATA-CTTTATTTAAATGT--TAACAC-AACTATA-CTTGT-GACT-GAC-CCGATA--A-GAAA--ATTGTT-AATCCTACCAAGATATTACAA--AT-CA--AGA--GCGAAACATGTT----GTTACTTGGAAACT--TGCTATTTTAATTAAGAAAAGAAAAAT-CAAG-AGTAAATGTT----AAA--A---TATA-TT-TTACAT-TTCACTG-AT-TTAGATATCTACACT--GAGCTGCTTTAATTT--TGTT---TTGTAC-TTTCAC-GA-TG-TAT-GCT-AACATTGGTA-ATTGTCAAT
gi|14 : AACAAAATTAAG--AA-TAAGTGCCCATCCATCG--T--ATATTGAAATGGG------TAG-A--TA-TTCTAaaagttatt
gi|11 : AAAATAAGA--A--TCAGTGCCTATT-ATTCCTTACATATCGAAACA-G------GA--AGATA-TTCTA------------------------------TTGCCAGAGAAA--AA------------------C-GTA--TCATT-T-A-------TTGAAAATGAAATAC-ATTTTGAAC-T---------TCC-------AAATCATGA-T-------------CAATGTCATGATCTACATT----AT---------TGAATTTCTTTA
gi|9 : GT----TTA-------ATG-ATATATTTAG---TGTTAACAC-A--TATA-CTAGT-GA-T-GAT-CCAATT--TGAAAA--ATTGTC-AATCCTAC--AAATATTACAT--CTGCA--A-AAGG---GGCATGTTAATGTTT-CTTAAAAACC--TGC--TTTATA-TAAGAAAAG-AAAGT-CTGCAATG-AATGTT------GAGA---TATACTT-ATGCA---TAAATATATGTTATATATATAttctaat
gi|12 : tgtatcatttacaggaagcatatatacgggtactactAGT-AATTTTTTTCAAAAGA---TATG-TTTGTACATTTT---TGATT-TTGTATATCTACATT--GATCTATTCAA-TTT--TGTTAAATTGTACTATTCAT-GAttcactacagtaattttg
gi|13 : aagtcgacTTCAT-GACTG-TAT-GCTTAACA-TGGTA-ATTTTCAAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TACAAATATTACAGCTGCAAGAGGGATCTGTTGTTTCTTGAAAGAACTTCTTTGAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 2 77777777777777777777777777777777777777777777777 2 1 2222 222222 1 11 55555555555 1 1 555555555555 1 1 1 11 111 22222 11 111 1111 1111111 11 11 222 111111 33333 44444444 1 11111 1 1 11111 1111 111 1111 33333333333333333 11111 11111 1111111 2222222 3333333333333 11 1111111 11111 11 22 11111 1 1 222222 111 11 111 11 111 1 1 1 1 1
lowQualScore : 88 5 4 5 0 88 11111111111111111111111111111111111111111111111 0 0 1111 2 2 555555 0 22 3 3 22222222222 0 3 3 0 000000000000 3 0 3 0 0 22 666 55555 3 6 88 6 11 1 5 666 3 7777 8888888 11 11 0 8 6 111 4 66 0 4 888888 22 5 99 22222 33333333 1 88888 5 44 4 2 5 5 3 888 55 55 0 6 6 8 00000 5 66 777 888 5555 66 5 66 66 66 00 5 55 4 666 1 88888 0 0 66 555 6666 3 55 4 44444444444444444 5 22222 55555 55 5 5 5 9 5 5 6666666 3 5 5 66 77 5 1111111 2222222222222 5 5 22 9999 8888888 4 3 4 99999 33 5 5 5 5 5 77 5 22 77 5 66 66 00 5 66 888 33333 0 66 99 99 3 0 0 3 9 3 111111 444 8 8 999 5 3 8 8 0 11 5 000 0 11 3 777 3 8 2 0 0 0 0 2 0
lowQualScore : .. . . . . .. ............................................... . . .... . . ...... . .. . . ........... . . . . ............ . . . . . .. ... ..... . . .. . .. . . ... . .... ....... .. .. . . . ... . .. . . ...... .. . .. ..... ........ . ..... . .. . . . . . ... .. .. . . . . ..... . .. ... ... .... .. . .. .. .. .. . .. . ... . ..... . . .. ... .... . .. . ................. . ..... ..... .. . . . . . . ....... . . . .. .. . ....... ............. . . .. .... ....... . . . ..... .. . . . . . .. . .. .. . .. .. .. . .. ... ..... . .. .. .. . . . . . . ...... ... . . ... . . . . . .. . ... . .. . ... . . . . . . . . .
lowQualScore : 00 0 0 5 0 00 55555555555555555555555555555555555555555555555 0 0 2222 5 5 222222 0 55 2 2 22222222222 0 2 2 0 888888888888 2 0 2 0 0 00 222 00000 2 5 88 0 00 4 0 666 2 0000 0000000 00 00 8 0 7 999 3 99 7 9 777777 99 7 22 22222 44444444 4 11111 7 44 2 5 0 0 1 888 11 44 8 2 5 5 88888 0 99 111 999 6666 99 6 99 99 99 22 0 11 3 999 0 00000 9 9 11 333 2222 7 66 4 00000000000000000 0 00000 99999 11 0 0 0 4 0 0 2222222 2 0 1 99 00 0 2222222 5555555555555 0 0 66 4444 9999999 4 6 4 88888 66 7 7 7 7 7 99 7 00 99 7 99 99 66 0 99 888 66666 4 99 22 22 2 0 0 2 2 8 888888 000 0 0 888 0 8 0 8 8 00 6 000 8 00 2 000 2 0 5 0 0 0 0 5 0
consensus : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC----AAAACAAGA--CATGAACAA-CTGA---AGA-ATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----ATT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATT--GTA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCCCC-ACTC----CCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTT-AACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAA--ATGCAAGA-A--G---AACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
Reference ( family-8520 ) : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------NTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAC-GTAAAC--AA-----AATTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC--A-AAAACAAGA-ACACGAACAA-CTGA---A-A-ATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GNTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----ATT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTANCAAAATTAAG--AA-TAAGTGCCCATCCATT--GTA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCCCC-ATTC----CCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-G-T-AACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNNGGAAA--ATTGTT-AATCCTAC--AAATATTACAA--ATGCA--A-A--G---AACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCANTG-ANTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|1 : TAATT--TCTCAGC-GAAATTATGTTAAAATTAA-ATCAGTCCATTGAATATACCAATTATCACTATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTTTTGAAAAAACACAACATCTTATATTTAAAGACATAACTTGGA----GTA-ATAGAAATTAAA-GCATTCAAAT--TCGCTGTCTTGTATGGATTAGGGT---------TTTTCC-TT-GTATTACT-ATG-TTATGA-----------AAAATATCTTCAAAATACTACTTAAGATTGA-AAGAAATA-GAATTGTAAA---AA-----GATTATAACGAT-ATTTAGTGTTATCTGCATTTAAAGAAGATAAAAATCT--GTATCAAAAAATTTTCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AA-CT-GAA-TAT--GCTTCCT--TGAATATTTC--C-ACTACAACTCTGAAATATAA-ATGACAAA--AACACTACC--A-AAAACAAAATACATGAACAATCTGA---A-A-ATATAAGTAAATCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAA------TG-AA--TA--TAAACTGC-AAC----ATT--ATTTGAGGCT--ACC--TTT--AAAGAAATGTG-AT-AGGT-TGTACTAACAAAATTAAG--A--TAAGTGCCCATCCATT--GTA-ATATTGAAACG------TA--ATA-TTCTAA--A-------------CCCCCC-ACTC----CCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT---T-AACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATAAGGAAA--ATTGTT-AATCCTAC--AAATATTACAA--ATGCA--A-A--G---AACATGTT----TTTATTTGAA--AATT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGT-AATGTT---AAAAGA---TATA-TT-GTACATCTTCAGTG-AATTTATATATCTACATT--GATCTG-T-TT--TTTAATGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|10 : taaTTG-TTCCT--TGAATAGTCC--C-A-TACA-CTCTGAAATATAATATTACAAA--CACACTAC-----AAAACAAGATACATGAACAA-CTGA---AGA-ATATAAGTAAGT-AGA-CTG-TG--A---AAA-TTA-G-TTTGTATAGTAAAA-TCATAAACTCAAAA----TG-AA--TA--CAAACTG--AAC----ATTAAATTT-AGGCTTAAC----TT--AAAAAAATGTGAAT-AGGT
gi|11 : aAAAAT-AAG--AA-TCAGTGCCTAT-TATTCCTTACATATCGAAACA---GGA-A-GATA-TTCT-------------------------ATTG----CCAGAGAAA--AA-----------CGT----------ATCATT-T-A-------TTGAAAATGAAATAC-ATTTTGAACT----------TCC-------AAATCATGAT-------------CAATGTCATGATCTACATT----AT---------TGAATTTCTTT-ATT-C-T-AA
gi|12 : AGTAATTTTTTTCAAAAGA---TATG-TTTGTACATTTT---TG-ATTTTGTATATCTACATT--GATCTA-T-TCAATTT--TGTTAAATTGTACTATTCAT-GAt
gi|13 : aagtcgacTTCAT-GACTG-TAT-GCTTAACA-TGGTA-ATTTTCAAT
gi|14 : attttttttttaaAACAAAATTAAG--AA-TAAGTGCCCATCCATC--GT--ATATTGAAAT----GGGTA-GATA-TTCTAaaagttatctt
gi|15 : TAC--AAATATTACAG--CTGCAAGA-G--G---GATCTGTT----GTTTCTTGAAAGAACT--T-C--TTTGA
gi|16 : A-TATT-GCTTCCT--TGAATATTTCCAC-A-TACAACTCTGAAATATAA-t
gi|2 : ATTTAAAGGCATA-ACTGGA----AACCATA-AGA----GAGCAT-CAAATCTTTGCTGTC-TG-ATGAATTGGGGG---------TTTTCCTTTTGTATCACTTATGCTTATGA-----------AAAA-ATGTTCAAA-TACTACTTAAGA-TGATAAGAAATACAAAT-GTAAACCAAA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGGAAATGAAAATATTCGTATCTAAAA--TATCTT-GCAAAAAAGAAAAC----TGTCCT----CTGATTAGACTGCAAACAGACT--AA-TA-TTGCTTCCT----AATA--------A-TAT--CTCTGAAATAT-A-ATTACAAG--AACCCTACTCAA-AAAACAAGA------AACAA-C-GAAGTA-A-ATACAAA-AAGTCAGA-CTG-TGGAA---CAA--TA-GGTTTTTAATGTAAATATCGTAAATC-AAAA----TGAAA--TA--CAAATT---AACAAGAATT--ATTGGAGGCT--ACCTTTTT--ATAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAGCCAT-TAATGGTCC-TTCATT--GTA-ATATTG-AACC---AGGTA-GATA-TTCTAA--A--------------CCCCC-ATT------CAAAGAAA--AC-GTCTTTTGCTTTTT-CAT-GTAGA-TG-T-T-A-------TTGAAGATGAGAAAC-ATTTTGTA-T--ATA--TG-TT---------AAATATGAA-------------CAA-G-CA-GAT-GGCAGT----ATA-------ATG-A-CTATTT-AATCGTT-AACACA---ATAA-CTTGT-GA-T-GACTCCCATATTCGGAAAACATGGTT-AATCCTAC--AAATA-TACAA--ATGCAAGA-A--G---AACATGTT----TACATTTGAA--AA
gi|3 : AAAATCTT-GTATC-AAAA--TTTCTTTGT--CAAAAGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACTTGAACTATT-G-TTCCT--T-AATATTTCACC-A-TACAACTCTGAAATATAA-ATTAAAAAGAAACACTACC--CCAAAACAAAA-CCATGAACAA-CTGG---A-AGATATAAGTAAATCGGAACTG-TGGAA---AA--TTA-G-TTTTTATAG--AAAATCGTAAATCAAAA-----TG-AA--TA--TAAACTGC-AAC----ATT--TATTGAGGCT--ACC--TTT--AAGAAA-TGTG-AGGAGGTCTGTAC-AACAAA-TTAAG--AAATAAGTGCCCATCCAT---GTA--TATTGAAACG---GGATA-G-TA-TTCTAA--A-------------CCCCCCCACTC----CCAAAGAAA--C--GTC-TTTGC-TGTTTCAT-GTAGATTGTT-TTA-------TTGAAGATGAAAAACCATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAAG------------CAATG-CA-GAT-GGCAGT----ATAT------ATG-ATTTATTT-AAT-G-TTAACACA--TAT-AACTTGTTGA-TTGA--CCCA-ATAAGGAAA--ATTGTTTAATCCTAC--AAATATTACAA--ATGCA--A-A--G---AAGAACTG----TTTACTTGAA--AACTTGTGT--TTTAAATTAAGAAAAG-AAAATCCAAGAGGTAAATGTT---AAGAGAGAGTATA-GT-GTAC-TCTTCAGTG-ATTTTATATATCTACATTTGAATCTG-T-TTAATTT--TG-T--ACTGTACTTTTCATGGACTGCTATCGCT-AACA-T-GTATATTGTCAAT
gi|4 : aTTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGAG--------TTTTCC-TTTGTATCACTTATG-TTATG------------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AATTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAA-GAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TA-TTGCTTCCTAATGAAT---------------ACTCTGAAATATAA-ATTACAAG--AACACTACC----AAAACAA-------GAACAA-CTGA---AGA-ATACAAGTAAATCAGA-CTG-TGG-A---AAA-TTA-GGTTTTTATAGT-AAAATCGTAAATC-AAAA----TG-AA--TA--CAAATTAC-AAG----ATT--ATTTGAGGCT--ACC--TTT--TAAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAG--AA-TAAGTGTCCATTCATT--GT--ATATTGAAAC----AGGTA-GATA-TTCTAA--A--------------CCCCC-ATTC----CCAAAGAAA--AACGTC-TTTGC-TTTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ACTTATTT-AAT-GTT-AACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATTCGGAAA--ATGGTT-AATCCTAC--AAATATTACAA--ATGCAAGA-A--G---AACATG-------TTACTTGAA--AAa
gi|5 : AAATCAGA-CTG-TGGAA---A---TT--GCTTATTATAGTAAAA-TCGTAAATC-AAAA----TG-AA--TA---AAACTGCGAACA---ATT--ATTT-AGGC---ACC--TTT--AAGAACATGTG-AT-AGGTCT-T-CTAAC-AAATGAAG---A-TAATTG-CCATCCATT--GTG-ATATTGAAACG---GAGTA--ATACTTCTAACCA-------------CCCCCC-CCCCCACTCCAAAGAAA--AACGTC-TTTGC-TGTT-CAT-GTAGA-TGTTAT-A-------TTGAAGATG-AAAAC-A-TTTGTA-T--ATATATG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT--GCAGT----GTA-------ATA-CTTTATTTAAAT-GTT-AACACAACTAT-A-CTTGT-GACT-GA--CCCG-ATAA-GAAA--ATTGTT-AATCCTACCAAGATATTACAA--AT-CA--AGA--GCGAAACATGTT----GTTACTTGGA--AACT--TGCTATTTTAATTAAGAAAAGAAAAAT-CAAG-AGTAAATGTT---A--AAA---TATA-TT-TTACAT-TTCACTG-A-TTTAGATATCTACACT--GAGCTGCT-TTAATTT--TGTT---TTGTAC-TTTCAC-GA-TG-TAT-GCT-AACATTGGTA-ATTGTCAAT
gi|6 : CCT--TGAATATTTC--CCA-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC----AAAACAAG--------------TGA---AGA-ATATA--TAA-TCAGA-ATG-GAGAATGGAGACTTT-GCTTTTTATAGT-AAAATCGTAAATC-AAAA----TG-AA--TA--CAAATTGC-AAC----ATT--ATTTGAGACT--ACT--TTTTAAAAAAAATGTG-AT-AGTTCAGTGTTAACAAAATTAAG--AA-TAAGTGTCCATTCAGT--GT--ATATTGAAACGGGTGGATAGGATA-TTCTAA--ACCAACCCTCCCCCCCCCCC-AATT----CCAAAGAAA--GC-GTC-TTTGC-TGTT-CATGGTATATTGTT-T-A-------ATGAA-ATG-AAAAC-ATTTTGTATT--ATAT-T--TTCA------AAAGTATGAA-------------CAATG-CA--AT--GCAGTAAGAATA-------ATG-A-TTGTTT-AAT-G-T-AACACAT-TAT-A-CTTGT-GA-T-GA--CCCA-ATTAGG-AA--ATTG-T-AATCCTAC--AAACATTACAATGATG----A-A--G---AACATGTT----GATACTTGCA--AACT--TGC--Taaagttatt
gi|7 : TAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGACATA-CTTGGAGTATATACGCAGAAA----G-GCAT-CAAATC-TTGTTGTCTTGTATGAATTAGGGACTAAGGGTGCTTTCT-TTTGTATTACTTATG-TAATGAAAATACGGGTGAAAATATGTTCAAA-TACTATATAAGATTGA-AATAAATA-GAAC-GTAAAC--AAGATTCAGTTGCAACAATTATTTTGTGTT-------------GAAGATAAAAATATT-GTATCTAAAA--TATCTTGAC---AAAGGAAACTGCATGTCCTCATGC--ATT--ACTGCAA--AAACT-GAA-TA-TTGCTTCCT--
gi|8 : taaattACTAACAAATTGA---A-A-ACACAA--AAGT-AAA-CTGGT-------AAA-TTATATTTTTTACAGTACTATTC------TAAAAACTGCTG-AAACTATCCAAATT-C-AAA----ATC--AT------CT--AAC--TTT--AACAA--TTTC-A--AAATCT-----ATCAAGATTAAG--GA-TAAGTACACATCAGTT--ATA--TATTGAAACT---GG-CA-GATA-TTGTAA--A-------------CCACCT-ATTC----CTAGAGAAAATAA-ATA--TTGT-TATC-CCT-GTACA-TGTA-T-AAATCTAGTCAAAGAAGAATTAC-ATTTTCTGTTGAATAC-TGAATCTATAGAGAAAATATGAAGATGTTTCTGTACTAATA-CA-TGT-AACAAT----ATATCAGTATATG-ATTTACTT-AAT-
gi|9 : gaaataaGT----TTA-------ATG-ATATATTT-AGT-G-TTAACACA--TAT-A-CTAGT-GA-T-GA--TCCA-ATTTGAAAA--ATTGTC-AATCCTAC--AAATATTACAT--CTGCA--A-AAGG---GGCATGTTAATGTTT-CTTAAA--AACC--TGC--TTTATA-TAAGAAAAG-AAAGT-C-TGCAATGAATGTT-----GAGA---TATACTT-ATGCA---TAAATATATGTTATATA--TATATT--CA-CTA-CAGTAATTT--TG
Alignments
lowQualScore : 11 1 1 1 44444444444 11 777777777777777777777 1 1 2222 222222 1 11 5555555555 1 1 44444444444 1 1 1 1 111 22222 11 111 1111 1111111 11 11 222 2222222222 2222 4444444 1 111 1111111 1 1 22222 1111 111 111 1111111 33333333333333333 11111 11111 1111111 2222222 3333333333333 11 1111111 11 1111111 1 1 222222 111 11 111 11 111 1 1 1 1 1
lowQualScore : 88 5 1 5 5 22 33333333333 88 222222222222222222222 5 0 1111 2 2 555555 0 22 3 3 1111111111 0 3 3 0 77777777777 66 0 3 0 0 0 666 55555 3 6 88 6 11 1 5 666 3 7777 8888888 11 11 0 8 6 000 4 66 0 2222222222 66 5 99 1111 6 4444444 1 444 44 4 2 5 5 3333333 55 0 0 2 6 33333 5 66 777 888 0000 5 66 5 66 66 66 00 5 55 000 0 1 66 99 66 555 3333333 55 4 44444444444444444 22222 5 1 7 55555 55 5 5 5 9 5 5 6666666 3 5 5 66 77 5 1111111 2222222222222 5 5 22 9999 8888888 4 3 4 5 33 5 5 5 5 5 77 5 22 77 5 66 5 0 66 0 3333333 0 66 99 99 3 0 0 3 9 3 111111 444 8 8 999 5 3 8 6 0 11 5 000 0 11 3 777 3 8 2 0 0 0 0 2 0
lowQualScore : .. . . . . .. ........... .. ..................... . . .... . . ...... . .. . . .......... . . . . ........... .. . . . . . ... ..... . . .. . .. . . ... . .... ....... .. .. . . . ... . .. . .......... .. . .. .... . ....... . ... .. . . . . ....... .. . . . . ..... . .. ... ... .... . .. . .. .. .. .. . .. ... . . .. .. .. ... ....... .. . ................. ..... . . . ..... .. . . . . . . ....... . . . .. .. . ....... ............. . . .. .... ....... . . . . .. . . . . . .. . .. .. . .. . . .. . ....... . .. .. .. . . . . . . ...... ... . . ... . . . . . .. . ... . .. . ... . . . . . . . . .
lowQualScore : 00 0 0 5 5 00 55555555555 55 555555555555555555555 0 0 2222 5 5 222222 0 55 2 2 2222222222 0 2 2 0 55555555555 55 0 2 0 0 0 222 00000 2 5 88 0 00 4 0 666 2 0000 0000000 00 00 8 0 7 888 3 99 7 1111111111 33 7 22 8888 7 3333333 4 444 44 2 5 0 0 0000000 44 8 1 6 2 00000 0 99 111 999 6666 0 99 6 99 99 99 22 0 11 444 5 9 11 22 11 333 6666666 66 4 00000000000000000 55555 0 1 6 99999 11 0 0 0 4 0 0 2222222 2 0 1 99 00 0 2222222 5555555555555 0 0 66 4444 9999999 4 6 4 0 66 7 7 7 7 7 99 7 66 99 7 99 0 4 99 1 9999999 4 99 22 22 2 0 0 2 2 8 888888 000 0 0 888 0 2 0 0 8 00 6 000 8 00 2 000 2 0 5 0 0 0 0 5 0
consensus : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--C-ATGAACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
Reference ( family-8520 ) : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--C-ATGAACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|1 : TAATT--TCTCAGC-GAAATTATGTTAAAATTAA-ATCAGTCCATTGAATATACCAATTATCACTATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTTTTGAAAAAACACAACATCTTATATTTAAAGACATAACTTGGA----GTA-ATAGAAATTAAA-GCATTCAAAT--TCGCTGTCTTGTATGGATTAGGGT---------TTTTCC-TT-GTATTACT-ATG-TTATGA-----------AAAATATCTTCAAAATACTACTTAAGATTGA-AAGAAATA-GAATTGTAAA---AA-----GATTATAACGAT-ATTTAGTGTTATCTGCATTTAAAGAAGATAAAAATCT--GTATCAAAAAATTTTCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AA-CT-GAA-TAT--GCTTCCT--TGAATATTTC--C-ACTACAACTCTGAAATATAA-ATGACAAA--AACACTACC---AAAAACAAAATAC-ATGAACAATCTGAA---AATATAAGTAAATCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAA------TG-AA--TA--TAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAGAAATGTG-AT-AGGT-TGTACTAACAAAATTAAG--A--TAAGTGCCCATCCATTG--TA-ATATTGAAACG------TA--ATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AA---TTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATAAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-A--A--AGAACATGTT----TTTATTTGAA--AATT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGT-AATGTT---AAAAGA---TATA-TT-GTACATCTTCAGTG-AATTTATATATCTACATT--GATCTG-T-TT--TTTAATGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|10 : taaTTG-TTCCT--TGAATAGTCC--C-A-TACA-CTCTGAAATATAATATTACAAA--CACACTAC----AAAA-CAAGATAC-ATGAACAA-CTGAAG--AATATAAGTAAGT-AGA-CTG-TG--A---AAA-TTA-G-TTTGTATAGTAAAA-TCATAAACTCAAAA----TG-AA--TA--CAAACTG--AAC----A-TTAAATTT-AGGCTTAAC----TT--AAAAAAATGTGAAT-AGGT
gi|11 : aAAAAT-AAG--AA-TCAGTGCCTATT-ATTCCTTACATATCGAAACA---GGA-A-GATA-TTCTA------------------------------TTGCCAGAGAAA--AA-----------CGT----------ATCATT-T-A-------TTGAAAATGAAATAC-ATTTTGAACT----------TCC-------AAATCATGAT-------------CAATGTCATGATCTACATT----AT---------TGAATTTCTTT-A
gi|12 : AGTAATTTTTTTCAAAAGA---TATG-TTTGTACATTTT---TG-ATTTTGTATATCTACATT--GATCTA-T-TCAATTT--TGTTAAATTGTACTATTCAT-GAttctaat
gi|13 : aagtcgacTTCAT-GACTG-TAT-GCTTAACA-TGGTA-ATTTTCAAT
gi|14 : attttttttttaaAACAAAATTAAG--AA-TAAGTGCCCATCCATCG--T--ATATTGAAAT----GGGTA-GATA-TTCTAaaagttatctt
gi|15 : TAC--AAATATTACAGCTGC-AAGA--GGGATCTGTT----GTTTCTTGAAAGAACT--T-C--TTTGA
gi|16 : A-TATT-GCTTCCT--TGAATATTTCCAC-A-TACAACTCTGAAATATAA-t
gi|2 : ATTTAAAGGCATA-ACTGGA----AACCATA-AGA----GAGCAT-CAAATCTTTGCTGTC-TG-ATGAATTGGGGG---------TTTTCCTTTTGTATCACTTATGCTTATGA-----------AAAA-ATGTTCAAA-TACTACTTAAGA-TGATAAGAAATACAAAT-GTAAACCAAA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGGAAATGAAAATATTCGTATCTAAAA--TATCTT-GCAAAAAAGAAAAC----TGTCCT----CTGATTAGACTGCAAACAGACT--AA-TA-TTGCTTCCT----AATA--------A-TAT--CTCTGAAATAT-A-ATTACAAG--AACCCTACTCAAAAAA-CAAGA-------AACAA-C-GAAGTAAATACAAA-AAGTCAGA-CTG-TGGAA---CAA--TA-GGTTTTTAATGTAAATATCGTAAATC-AAAA----TGAAA--TA--CAAATT---AACAAGAA-TT--ATTGGAGGCT--ACCTTTTT--ATAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAGCCAT-TAATGGTCC-TTCATTG--TA-ATATTG-AACC---AGGTA-GATA-TTCTAA--A--------------CCC-----CC-ATT--CAAAGAAA--AC-GTCTTTTGCTTTTT-CAT-GTAGA-TG-T-T-A-------TTGAAGATGAGAAAC-ATTTTGTA-T--ATA--TG-TT---------AAATATGAA-------------CAA-G-CA-GAT-GGCAGT----ATA-------ATG-A-CTATTT-AATCGTTAACACA---ATAA-CTTGT-GA-T-GACTCCCATATTCGGAAAACATGGTT-AATCCTAC--AAATA-TACAAATGC-AAGA--AGAACATGTT----TACATTTGAA--AA
gi|3 : AAAATCTT-GTATC-AAAA--TTTCTTTGT--CAAAAGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACTTGAACTATT-G-TTCCT--T-AATATTTCACC-A-TACAACTCTGAAATATAA-ATTAAAAAGAAACACTACCCC-AAAA-CAAAA--CCATGAACAA-CTGGAA--GATATAAGTAAATCGGAACTG-TGGAA---AA--TTA-G-TTTTTATAG--AAAATCGTAAATCAAAA-----TG-AA--TA--TAAACTGC-AAC----A-TT--TATTGAGGCT--ACC--TTT--AAGAAA-TGTG-AGGAGGTCTGTAC-AACAAA-TTAAG--AAATAAGTGCCCATCCAT-G--TA--TATTGAAACG---GGATA-G-TA-TTCTAA--A-------------CCCC-----CCCACTCCCAAAGAAA--C--GTC-TTTGC-TGTTTCAT-GTAGATTGTT-TTA-------TTGAAGATGAAAAACCATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAAG------------CAATG-CA-GAT-GGCAGT----ATAT------ATG-ATTTATTT-AAT-GTTAACACA--TAT-AACTTGTTGA-TTGA--CCCA-ATAAGGAAA--ATTGTTTAATCCTAC--AAATATTACAAATGCAAAGA--AGAAC-TG------TTTACTTGAA--AACTTGTGT--TTTAAATTAAGAAAAG-AAAATCCAAGAGGTAAATGTT---AAGAGAGAGTATA-GT-GTAC-TCTTCAGTG-ATTTTATATATCTACATTTGAATCTG-T-TTAATTT--TG-T--ACTGTACTTTTCATGGACTGCTATCGCT-AACA-T-GTATATTGTCAAT
gi|4 : aTTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGAG--------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAA-TATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AATTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAG-AAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATT-GCTTCCTAATGAATA---------------CTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--------ACAA-CTGAAG--AATACAAGTAAATCAGA-CTG-TGGAA---AA--TTA-GGTTTTTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA--CAAATTAC-AAG----A-TT--ATTTGAGGCT--ACC--TTT--TAAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAG--AA-TAAGTGTCCATTCATTG--TA--TATTGAAACA---GG-TA-GATA-TTCTAA--A--------------CCC-----CC-ATTCCCAAAGAAA--AACGTC-TTTGC-TTTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ACTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATTCGGAAA--ATGGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATG-------TTACTTGAA--AAa
gi|5 : AAATCAGA-CTG-TGGAA---A---TT--GCTTATTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA---AAACTGCGAAC----AATT--ATTT-AGGC---ACC--TTT--AAGAACATGTG-AT-AGGTCT-T-CTAACAAA-TGAAG--A--TAATTGCC-ATCCATTG--TG-ATATTGAAACG---GAGTA--ATACTTCTAACCA-------------CCCCCCCCCCC-ACT-CCAAAGAAA--AACGTC-TTTGC-TGTT-CAT-GTAGA-TGTTAT-A-------TTGAAGATG-AAAAC-A-TTTGTA-T--ATATATG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT--GCAGT----GTA-------ATA-CTTTATTTAAAT-GTTAACACAACTAT-A-CTTGT-GACT-GA--CCCG-ATAA-GAAA--ATTGTT-AATCCTACCAAGATATTACAAAT-C-AAGAGCGAAACATGTT----GTTACTTGGA--AACT--TGCTATTTTAATTAAGAAAAGAAAAAT-CAAG-AGTAAATGTT---A--AAA---TATA-TT-TTACAT-TTCACTG-A-TTTAGATATCTACACT--GAGCTGCT-TTAATTT--TGTT---TTGTAC-TTTCAC-GA-TG-TAT-GCT-AACATTGGTA-ATTGTCAAT
gi|6 : CCT--TGAATATTTC--CCA-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAG---------------TGAAG--AATATA--TAA-TCAGA-ATG-GAGAATGGAGACTTT-GCTTTTTATAGT-AAAATCGTAAATC-AAAA----TG-AA--TA--CAAATTGC-AAC----A-TT--ATTTGAGACT--ACT--TTTTAAAAAAAATGTG-AT-AGTTCAGTGTTAACAAAATTAAG--AA-TAAGTGTCCATTCAGTG--T--ATATTGAAACGGGTGGATAGGATA-TTCTAA--ACCAACCCTCCCCCCCCC-----CC-AATTCCAAAGAAA--GC-GTC-TTTGC-TGTT-CATGGTATATTGTT-T-A-------ATGAA-ATG-AAAAC-ATTTTGTATT--ATAT-T--TTCA------AAAGTATGAA-------------CAATG-CA--AT--GCAGTAAGAATA-------ATG-A-TTGTTT-AAT-G-TAACACAT-TAT-A-CTTGT-GA-T-GA--CCCA-ATTAGG-AA--ATTG-T-AATCCTAC--AAACATTAC-AATG--ATGA--AGAACATGTT----GATACTTGCA--AACT--TGC--Taaagttatt
gi|7 : TAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGACATA-CTTGGAGTATATACGCAGAAA----G-GCAT-CAAATC-TTGTTGTCTTGTATGAATTAGGGACTAAGGGTGCTTTCT-TTTGTATTACTTATG-TAATGAAAATACGGGTGAAAATATGTTCAAA-TACTATATAAGATTGA-AATAAATA-GAAC-GTAAAC--AAGATTCAGTTGCAACAATTATTTTGTGTT-------------GAAGATAAAAATATT-GTATCTAAAA--TATCTTGAC---AAAGGAAACTGCATGTCCTCATGC--ATT--ACTGCAA--AAACT-GAA-TA-TTGCTTCCT--
gi|8 : taaattAACAAATTGAA---AACACAA--AAGT-AAA-CTGGT-------AAA-TTATATTTTTTACAGTACTATTC------TAAAAACTGCTG-AAACTATCCAAATT-C-AAA----A-TC--AT------CT--AAC--TTT--AACAA--TTTC-A--AAATCTAT-----CAAGATTAAG--GA-TAAGTACACATCAGTTA--TA--TATTGAAACT---GG-CA-GATA-TTGTAA--A-------------CCAC-----CT-ATTCCTAGAGAAAATAA-ATA--TTGT-TATC-CCT-GTACA-TGTA-T-AAATCTAGTCAAAGAAGAATTAC-ATTTTCTGTTGAATAC-TGAATCTATAGAGAAAATATGAAGATGTTTCTGTACTAATA-CA-TGT-AACAAT----ATATCAGTATATG-ATTTACTT-AAT-
gi|9 : gaaataaactGT----TTA-------ATG-ATATATTT-AGT-GTTAACACA--TAT-A-CTAGT-GA-T-GA--TCCA-ATTTGAAAA--ATTGTC-AATCCTAC--AAATATTACATCTGC-AAAA--GGGGCATGTTAATGTTT-CTTAAA--AACC--TGC--TTTATA-TAAGAAAAG-AAAGT-C-TGCAATGAATGTT-----GAGA---TATACTT-ATGCA---TAAATATATGTTATATA--TATATT--CA-CTA-CAGTAATTT--TG
Alignments
lowQualScore : 11 1 1 1 44444444444 11 777777777777777777777 1 1 2222 222222 1 11 5555555555 1 1 44444444444 1 1 1 1 111 22222 11 111 1111 1111111 11 11 222 2222222222 2222 4444444 1 111 1111111 1 1 22222 1111 111 111 1111111 33333333333333333 11111 11111 1111111 2222222 3333333333333 11 1111111 11 1111111 1 1 222222 111 11 111 11 111 1 1 1 1 1
lowQualScore : 88 5 1 5 5 22 33333333333 88 222222222222222222222 5 0 1111 2 2 555555 0 22 3 3 1111111111 0 3 3 0 77777777777 66 0 3 0 0 0 666 55555 3 6 88 6 11 1 5 666 3 7777 8888888 11 11 0 8 6 000 4 66 0 2222222222 66 5 99 1111 6 4444444 1 444 44 4 2 5 5 3333333 55 0 0 2 6 33333 5 66 777 888 0000 5 66 5 66 66 66 00 5 55 000 0 1 66 99 66 555 3333333 55 4 44444444444444444 22222 5 1 7 55555 55 5 5 5 9 5 5 6666666 3 5 5 66 77 5 1111111 2222222222222 5 5 22 9999 8888888 4 3 4 5 33 5 5 5 5 5 77 5 22 77 5 66 5 0 66 0 3333333 0 66 99 99 3 0 0 3 9 3 111111 444 8 8 999 5 3 8 6 0 11 5 000 0 11 3 777 3 8 2 0 0 0 0 2 0
lowQualScore : .. . . . . .. ........... .. ..................... . . .... . . ...... . .. . . .......... . . . . ........... .. . . . . . ... ..... . . .. . .. . . ... . .... ....... .. .. . . . ... . .. . .......... .. . .. .... . ....... . ... .. . . . . ....... .. . . . . ..... . .. ... ... .... . .. . .. .. .. .. . .. ... . . .. .. .. ... ....... .. . ................. ..... . . . ..... .. . . . . . . ....... . . . .. .. . ....... ............. . . .. .... ....... . . . . .. . . . . . .. . .. .. . .. . . .. . ....... . .. .. .. . . . . . . ...... ... . . ... . . . . . .. . ... . .. . ... . . . . . . . . .
lowQualScore : 00 0 0 5 5 00 55555555555 55 555555555555555555555 0 0 2222 5 5 222222 0 55 2 2 2222222222 0 2 2 0 55555555555 55 0 2 0 0 0 222 00000 2 5 88 0 00 4 0 666 2 0000 0000000 00 00 8 0 7 888 3 99 7 1111111111 33 7 22 8888 7 3333333 4 444 44 2 5 0 0 0000000 44 8 1 6 2 00000 0 99 111 999 6666 0 99 6 99 99 99 22 0 11 444 5 9 11 22 11 333 6666666 66 4 00000000000000000 55555 0 1 6 99999 11 0 0 0 4 0 0 2222222 2 0 1 99 00 0 2222222 5555555555555 0 0 66 4444 9999999 4 6 4 0 66 7 7 7 7 7 99 7 66 99 7 99 0 4 99 1 9999999 4 99 22 22 2 0 0 2 2 8 888888 000 0 0 888 0 2 0 0 8 00 6 000 8 00 2 000 2 0 5 0 0 0 0 5 0
consensus : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--C-ATGAACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
Reference ( family-8520 ) : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--C-ATGAACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|1 : TAATT--TCTCAGC-GAAATTATGTTAAAATTAA-ATCAGTCCATTGAATATACCAATTATCACTATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTTTTGAAAAAACACAACATCTTATATTTAAAGACATAACTTGGA----GTA-ATAGAAATTAAA-GCATTCAAAT--TCGCTGTCTTGTATGGATTAGGGT---------TTTTCC-TT-GTATTACT-ATG-TTATGA-----------AAAATATCTTCAAAATACTACTTAAGATTGA-AAGAAATA-GAATTGTAAA---AA-----GATTATAACGAT-ATTTAGTGTTATCTGCATTTAAAGAAGATAAAAATCT--GTATCAAAAAATTTTCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AA-CT-GAA-TAT--GCTTCCT--TGAATATTTC--C-ACTACAACTCTGAAATATAA-ATGACAAA--AACACTACC---AAAAACAAAATAC-ATGAACAATCTGAA---AATATAAGTAAATCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAA------TG-AA--TA--TAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAGAAATGTG-AT-AGGT-TGTACTAACAAAATTAAG--A--TAAGTGCCCATCCATTG--TA-ATATTGAAACG------TA--ATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AA---TTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATAAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-A--A--AGAACATGTT----TTTATTTGAA--AATT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGT-AATGTT---AAAAGA---TATA-TT-GTACATCTTCAGTG-AATTTATATATCTACATT--GATCTG-T-TT--TTTAATGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|10 : taaTTG-TTCCT--TGAATAGTCC--C-A-TACA-CTCTGAAATATAATATTACAAA--CACACTAC----AAAA-CAAGATAC-ATGAACAA-CTGAAG--AATATAAGTAAGT-AGA-CTG-TG--A---AAA-TTA-G-TTTGTATAGTAAAA-TCATAAACTCAAAA----TG-AA--TA--CAAACTG--AAC----A-TTAAATTT-AGGCTTAAC----TT--AAAAAAATGTGAAT-AGGT
gi|11 : aAAAAT-AAG--AA-TCAGTGCCTATT-ATTCCTTACATATCGAAACA---GGA-A-GATA-TTCTA------------------------------TTGCCAGAGAAA--AA-----------CGT----------ATCATT-T-A-------TTGAAAATGAAATAC-ATTTTGAACT----------TCC-------AAATCATGAT-------------CAATGTCATGATCTACATT----AT---------TGAATTTCTTT-A
gi|12 : AGTAATTTTTTTCAAAAGA---TATG-TTTGTACATTTT---TG-ATTTTGTATATCTACATT--GATCTA-T-TCAATTT--TGTTAAATTGTACTATTCAT-GAttctaat
gi|13 : aagtcgacTTCAT-GACTG-TAT-GCTTAACA-TGGTA-ATTTTCAAT
gi|14 : attttttttttaaAACAAAATTAAG--AA-TAAGTGCCCATCCATCG--T--ATATTGAAAT----GGGTA-GATA-TTCTAaaagttatctt
gi|15 : TAC--AAATATTACAGCTGC-AAGA--GGGATCTGTT----GTTTCTTGAAAGAACT--T-C--TTTGA
gi|16 : A-TATT-GCTTCCT--TGAATATTTCCAC-A-TACAACTCTGAAATATAA-t
gi|2 : ATTTAAAGGCATA-ACTGGA----AACCATA-AGA----GAGCAT-CAAATCTTTGCTGTC-TG-ATGAATTGGGGG---------TTTTCCTTTTGTATCACTTATGCTTATGA-----------AAAA-ATGTTCAAA-TACTACTTAAGA-TGATAAGAAATACAAAT-GTAAACCAAA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGGAAATGAAAATATTCGTATCTAAAA--TATCTT-GCAAAAAAGAAAAC----TGTCCT----CTGATTAGACTGCAAACAGACT--AA-TA-TTGCTTCCT----AATA--------A-TAT--CTCTGAAATAT-A-ATTACAAG--AACCCTACTCAAAAAA-CAAGA-------AACAA-C-GAAGTAAATACAAA-AAGTCAGA-CTG-TGGAA---CAA--TA-GGTTTTTAATGTAAATATCGTAAATC-AAAA----TGAAA--TA--CAAATT---AACAAGAA-TT--ATTGGAGGCT--ACCTTTTT--ATAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAGCCAT-TAATGGTCC-TTCATTG--TA-ATATTG-AACC---AGGTA-GATA-TTCTAA--A--------------CCC-----CC-ATT--CAAAGAAA--AC-GTCTTTTGCTTTTT-CAT-GTAGA-TG-T-T-A-------TTGAAGATGAGAAAC-ATTTTGTA-T--ATA--TG-TT---------AAATATGAA-------------CAA-G-CA-GAT-GGCAGT----ATA-------ATG-A-CTATTT-AATCGTTAACACA---ATAA-CTTGT-GA-T-GACTCCCATATTCGGAAAACATGGTT-AATCCTAC--AAATA-TACAAATGC-AAGA--AGAACATGTT----TACATTTGAA--AA
gi|3 : AAAATCTT-GTATC-AAAA--TTTCTTTGT--CAAAAGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACTTGAACTATT-G-TTCCT--T-AATATTTCACC-A-TACAACTCTGAAATATAA-ATTAAAAAGAAACACTACCCC-AAAA-CAAAA--CCATGAACAA-CTGGAA--GATATAAGTAAATCGGAACTG-TGGAA---AA--TTA-G-TTTTTATAG--AAAATCGTAAATCAAAA-----TG-AA--TA--TAAACTGC-AAC----A-TT--TATTGAGGCT--ACC--TTT--AAGAAA-TGTG-AGGAGGTCTGTAC-AACAAA-TTAAG--AAATAAGTGCCCATCCAT-G--TA--TATTGAAACG---GGATA-G-TA-TTCTAA--A-------------CCCC-----CCCACTCCCAAAGAAA--C--GTC-TTTGC-TGTTTCAT-GTAGATTGTT-TTA-------TTGAAGATGAAAAACCATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAAG------------CAATG-CA-GAT-GGCAGT----ATAT------ATG-ATTTATTT-AAT-GTTAACACA--TAT-AACTTGTTGA-TTGA--CCCA-ATAAGGAAA--ATTGTTTAATCCTAC--AAATATTACAAATGCAAAGA--AGAAC-TG------TTTACTTGAA--AACTTGTGT--TTTAAATTAAGAAAAG-AAAATCCAAGAGGTAAATGTT---AAGAGAGAGTATA-GT-GTAC-TCTTCAGTG-ATTTTATATATCTACATTTGAATCTG-T-TTAATTT--TG-T--ACTGTACTTTTCATGGACTGCTATCGCT-AACA-T-GTATATTGTCAAT
gi|4 : aTTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGAG--------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAA-TATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AATTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAG-AAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATT-GCTTCCTAATGAATA---------------CTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--------ACAA-CTGAAG--AATACAAGTAAATCAGA-CTG-TGGAA---AA--TTA-GGTTTTTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA--CAAATTAC-AAG----A-TT--ATTTGAGGCT--ACC--TTT--TAAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAG--AA-TAAGTGTCCATTCATTG--TA--TATTGAAACA---GG-TA-GATA-TTCTAA--A--------------CCC-----CC-ATTCCCAAAGAAA--AACGTC-TTTGC-TTTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ACTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATTCGGAAA--ATGGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATG-------TTACTTGAA--AAa
gi|5 : AAATCAGA-CTG-TGGAA---A---TT--GCTTATTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA---AAACTGCGAAC----AATT--ATTT-AGGC---ACC--TTT--AAGAACATGTG-AT-AGGTCT-T-CTAACAAA-TGAAG--A--TAATTGCC-ATCCATTG--TG-ATATTGAAACG---GAGTA--ATACTTCTAACCA-------------CCCCCCCCCCC-ACT-CCAAAGAAA--AACGTC-TTTGC-TGTT-CAT-GTAGA-TGTTAT-A-------TTGAAGATG-AAAAC-A-TTTGTA-T--ATATATG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT--GCAGT----GTA-------ATA-CTTTATTTAAAT-GTTAACACAACTAT-A-CTTGT-GACT-GA--CCCG-ATAA-GAAA--ATTGTT-AATCCTACCAAGATATTACAAAT-C-AAGAGCGAAACATGTT----GTTACTTGGA--AACT--TGCTATTTTAATTAAGAAAAGAAAAAT-CAAG-AGTAAATGTT---A--AAA---TATA-TT-TTACAT-TTCACTG-A-TTTAGATATCTACACT--GAGCTGCT-TTAATTT--TGTT---TTGTAC-TTTCAC-GA-TG-TAT-GCT-AACATTGGTA-ATTGTCAAT
gi|6 : CCT--TGAATATTTC--CCA-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAG---------------TGAAG--AATATA--TAA-TCAGA-ATG-GAGAATGGAGACTTT-GCTTTTTATAGT-AAAATCGTAAATC-AAAA----TG-AA--TA--CAAATTGC-AAC----A-TT--ATTTGAGACT--ACT--TTTTAAAAAAAATGTG-AT-AGTTCAGTGTTAACAAAATTAAG--AA-TAAGTGTCCATTCAGTG--T--ATATTGAAACGGGTGGATAGGATA-TTCTAA--ACCAACCCTCCCCCCCCC-----CC-AATTCCAAAGAAA--GC-GTC-TTTGC-TGTT-CATGGTATATTGTT-T-A-------ATGAA-ATG-AAAAC-ATTTTGTATT--ATAT-T--TTCA------AAAGTATGAA-------------CAATG-CA--AT--GCAGTAAGAATA-------ATG-A-TTGTTT-AAT-G-TAACACAT-TAT-A-CTTGT-GA-T-GA--CCCA-ATTAGG-AA--ATTG-T-AATCCTAC--AAACATTAC-AATG--ATGA--AGAACATGTT----GATACTTGCA--AACT--TGC--Taaagttatt
gi|7 : TAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGACATA-CTTGGAGTATATACGCAGAAA----G-GCAT-CAAATC-TTGTTGTCTTGTATGAATTAGGGACTAAGGGTGCTTTCT-TTTGTATTACTTATG-TAATGAAAATACGGGTGAAAATATGTTCAAA-TACTATATAAGATTGA-AATAAATA-GAAC-GTAAAC--AAGATTCAGTTGCAACAATTATTTTGTGTT-------------GAAGATAAAAATATT-GTATCTAAAA--TATCTTGAC---AAAGGAAACTGCATGTCCTCATGC--ATT--ACTGCAA--AAACT-GAA-TA-TTGCTTCCT--
gi|8 : taaattAACAAATTGAA---AACACAA--AAGT-AAA-CTGGT-------AAA-TTATATTTTTTACAGTACTATTC------TAAAAACTGCTG-AAACTATCCAAATT-C-AAA----A-TC--AT------CT--AAC--TTT--AACAA--TTTC-A--AAATCTAT-----CAAGATTAAG--GA-TAAGTACACATCAGTTA--TA--TATTGAAACT---GG-CA-GATA-TTGTAA--A-------------CCAC-----CT-ATTCCTAGAGAAAATAA-ATA--TTGT-TATC-CCT-GTACA-TGTA-T-AAATCTAGTCAAAGAAGAATTAC-ATTTTCTGTTGAATAC-TGAATCTATAGAGAAAATATGAAGATGTTTCTGTACTAATA-CA-TGT-AACAAT----ATATCAGTATATG-ATTTACTT-AAT-
gi|9 : gaaataaactGT----TTA-------ATG-ATATATTT-AGT-GTTAACACA--TAT-A-CTAGT-GA-T-GA--TCCA-ATTTGAAAA--ATTGTC-AATCCTAC--AAATATTACATCTGC-AAAA--GGGGCATGTTAATGTTT-CTTAAA--AACC--TGC--TTTATA-TAAGAAAAG-AAAGT-C-TGCAATGAATGTT-----GAGA---TATACTT-ATGCA---TAAATATATGTTATATA--TATATT--CA-CTA-CAGTAATTT--TG
blockSeqs : GT C T T . TA . . . . . GTAT C G GA . CT T T ACTAAGGGTG T T T C AAATACGGGTG AT . T T C . CCA GATTC T G TC T . A T AAA A TGCA CATGC AG AC T C TT C AA TTTCCACA AA T GA TCAA . TACATG A GTA GT G C A G TGGAGAC AT G A C ACTGC A AC TCC GCG AAGA A AA G TA TT TA A GG GCC A CC AA CT ACA GGGTGGA GG C ACCAACCCTCCCCCC CCCCC C T G ATAA TT T T G T A T AATCTAG A C C GA TA A TATAGAG GATGTTTCTGTAC T T CT AAGA TCAGTAT A T A C AC A A T C T CT T TC AC T CA A GC TTAATGT AG TG TA T A C A A A TTCAAA GAG C T ATT C G T T TG T CT . T AAA T G C C C T T G T
blockSeqs : . . C G G . C T T AG . T T . . A . T . . . C . T G T T . T G C G . CTG . . . . TT C . TTTCACCA AA . . CCC . CCATG . G GT G C . . AAA A G A A A . . C GC . . . G . . . . T GCC A . A . AA AGGA G . CCAC . . T C AAC T . . . T . . . A . T . T . A G . . G . T . T . . T . . . . . . . AA . . . . . TTG . . . T . . A C A AAG . . . TC C C . T . T CA . T A T . C . . . . G .
blockSeqs : . . C . G . C . . G . T T . . T . . . . . C . T . T T . A G A G . C . . . . TT C . TTTCCCA AA . . C . . . A GT A C . . CAA A C A A A . . C AC . . . G . . . . T GTT A . A . GA CAGG G . AC . . C C AAC T . . . T . . . A . T . T . . . . . G . . . C . . . . . . . . . . TC . . . . . TTT . . . . . . . . A A . . . AT A A . T . G T . . . . . . . . . . . .
blockSeqs : T . . A . . . . C . . . . TT C . GTCCCA A . . C . . . G A A C . . AAA A C T A A . . T GC . . . G . . . . T AC A . T . A GGGA G . AC . . T T AA T . . . T . . . A . T . T . . . . . G . . . T . . . . . . . . . . AA . . . . . TTG . . . G G . . . A . . . . . . T . .
blockSeqs : . TT . . A . . . . . . . G T A C . . AA A T . A . . . C G . . . . . . . . T CT A . A . A GGAG G . A . . C C AC T . . . . . . . A . T . C . . . . . A . . . T . . . . . . . . . . TA . . . . . TTG . . .
blockSeqs : . . . . . . . . G . . . AA T . . . . . . C C . . . . . . . . T . A . A . A GGG G . A . . A . GC . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . TT . . . . . T .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . . . . . . A . A AGG G . . . . T . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A TGG . . . . . . .
blockSeqCons : T* ** TT* TTTCCCA*** ******* G** A* A** GGG**** G* A***** AC* **
originalCons : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTTGCTTCCT--TGAATATTTC--C-A-TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA--C-ATGAACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA-ATATTGAAACG---GGGTA-GATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT---AAGAGA---TATA-TT-GTACATCTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
finalCons : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATT-GCTTCCT--TGAATATTTCCCA---TACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA-------AACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCATCCATTG--TA--TATTGAAACGGG----TAG-ATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTTA-----AGA---TATA-TT-GTACAC-TTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
Alignments
lowQualScore : 11 1 1 1 44444444444 11 777777777777777777777 1 1 2222 222222 1 11 5555555555 1 1 44444444444 1 1 1 1 111 22222 11 111 1111 1111111 11 11 11111111 2222 444444 1 111 1111111 1 1 22222 1111 111 11111 33333333333333333 11111 11111 1111111 2222222 3333333333333 11 1111111 11 1111111 1 1 11 22222 11 11 111 11 111 1 1 1 1 1
lowQualScore : 88 5 1 5 5 22 33333333333 88 222222222222222222222 5 0 1111 2 2 555555 0 22 3 3 1111111111 0 3 3 0 77777777777 66 0 3 0 0 0 666 55555 3 6 88 6 11 1 5 666 3 7777 8888888 11 11 0 8 6 4 66 0 77777777 66 5 99 1111 6 777777 1 1 444 44 4 2 5 5 3333333 55 0 8 0 99999 5 66 777 888 0000 5 66 5 66 66 66 00 5 55 000 0 1 66 99 9999 8 4 4 4 11111 1 4 44444444444444444 22222 5 1 7 55555 55 5 5 5 9 5 5 6666666 3 5 5 66 77 5 1111111 2222222222222 5 5 22 9999 8888888 4 3 4 5 33 5 5 5 5 5 77 5 22 77 5 66 5 0 66 0 3333333 0 66 99 99 3 0 0 3 9 7 11 00000 8 8 44 44 8 6 0 11 5 000 0 11 3 777 3 8 2 0 0 0 0 2 0
lowQualScore : .. . . . . .. ........... .. ..................... . . .... . . ...... . .. . . .......... . . . . ........... .. . . . . . ... ..... . . .. . .. . . ... . .... ....... .. .. . . . . .. . ........ .. . .. .... . ...... . . ... .. . . . . ....... .. . . . ..... . .. ... ... .... . .. . .. .. .. .. . .. ... . . .. .. .... . . . . ..... . . ................. ..... . . . ..... .. . . . . . . ....... . . . .. .. . ....... ............. . . .. .... ....... . . . . .. . . . . . .. . .. .. . .. . . .. . ....... . .. .. .. . . . . . . .. ..... . . .. .. . . . .. . ... . .. . ... . . . . . . . . .
lowQualScore : 00 0 0 5 5 00 55555555555 55 555555555555555555555 0 0 2222 5 5 222222 0 55 2 2 2222222222 0 2 2 0 55555555555 55 0 2 0 0 0 222 00000 2 5 88 0 00 4 0 666 2 0000 0000000 00 00 8 0 7 3 99 7 66666666 33 7 22 8888 7 111111 4 4 444 44 2 5 0 0 0000000 44 8 8 1 11111 0 99 111 999 6666 0 99 6 99 99 99 22 0 11 444 5 9 11 22 4444 9 4 4 4 11111 1 4 00000000000000000 55555 0 1 6 99999 11 0 0 0 4 0 0 2222222 2 0 1 99 00 0 2222222 5555555555555 0 0 66 4444 9999999 4 6 4 0 66 7 7 7 7 7 99 7 66 99 7 99 0 4 99 1 9999999 4 99 22 22 2 0 0 2 2 0 00 00000 0 0 44 00 0 0 8 00 6 000 8 00 2 000 2 0 5 0 0 0 0 5 0
consensus : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTGCTTCCT--TGAATATTTC-C-CATACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA------AACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAA-TCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCAT----CCATTGT-A-TATTGAAACGG-G-T-----AGATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT--AAGA-----TATA-TT-GTACA-CTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
Reference ( family-8520 ) : NNNTAATTGTTCTCGGCCGAAATTATGTTGAAATTNATATCAGTCCATTGANNATACCAATTATCACCATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGA---------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAAATATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTGCTTCCT--TGAATATTTC-C-CATACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA------AACAA-CTGAAG--AATACAAGTAAGTCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAAAA----TG-AA--TA--CAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAAAAATGTG-AT-AGGTCTGTGCTAACAAAATTAAG--AA-TAAGTGCCCAT----CCATTGT-A-TATTGAAACGG-G-T-----AGATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATNAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATGTT----TTTACTTGAA--AACT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGTAAATGTT--AAGA-----TATA-TT-GTACA-CTTCAGTG-ATTTTATATATCTACATT--GATCTG-T-TTAATTT--TGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|1 : TAATT--TCTCAGC-GAAATTATGTTAAAATTAA-ATCAGTCCATTGAATATACCAATTATCACTATGGATCTGAATATGGATATCTGATTTCAAACATGACTTAATGTCTTCAGGATCAATTTCCTTTTGAAAAAACACAACATCTTATATTTAAAGACATAACTTGGA----GTA-ATAGAAATTAAA-GCATTCAAAT--TCGCTGTCTTGTATGGATTAGGGT---------TTTTCC-TT-GTATTACT-ATG-TTATGA-----------AAAATATCTTCAAAATACTACTTAAGATTGA-AAGAAATA-GAATTGTAAA---AA-----GATTATAACGAT-ATTTAGTGTTATCTGCATTTAAAGAAGATAAAAATCT--GTATCAAAAAATTTTCTTGGC--AAAAGGAAAC----TGTCCT----C--ATT--ACTGCAA--AA-CT-GAA-TAT-GCTTCCT--TGAATATTTC-C-ACTACAACTCTGAAATATAA-ATGACAAA--AACACTACC---AAAAACAAAATACATGAACAATCTGAA---AATATAAGTAAATCAGA-CTG-TGGAA---AAA-TTA-GCTTTTTATAGTAAAAATCGTAAATCAAA------TG-AA--TA--TAAACTGC-AAC----A-TT--ATTTGAGGCT--ACC--TTT--AAAGAAATGTG-AT-AGGT-TGTACTAACAAAATTAAG--A--TAAGTGCCCAT----CCATTGT-AATATTGAAACG----T-----A-ATA-TTCTAA--A-------------CCCC-----CC-ACTCCCAAAGAAA--AA-GTC-TTTGC-TGTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ATTTATTT-AA---TTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATAAGGAAA--ATTGTT-AATCCTAC--AAATATTACAAATGC-A--A--AGAACATGTT----TTTATTTGAA--AATT--TGC--TTTAAATTAAGAAAAG-AAAAT-CAAGAAGT-AATGTTAAAAGA-----TATA-TT-GTACATCTTCAGTG-AATTTATATATCTACATT--GATCTG-T-TT--TTTAATGTT--ATTGTACTTTTCAT-GACTG-TAT-GCT-AACA-TGGTA-ATTGTCAAT
gi|10 : taaATTG-TTCCT--TGAATAGT-C-C-CATACA-CTCTGAAATATAATATTACAAA--CACACTAC----AAAA-CAAGATACATGAACAA-CTGAAG--AATATAAGTAAGT-AGA-CTG-TG--A---AAA-TTA-G-TTTGTATAGTAAAA-TCATAAACTCAAAA----TG-AA--TA--CAAACTG--AAC----A-TTAAATTT-AGGCTTAAC----TT--AAAAAAATGTGAAT-AGGT
gi|11 : AAAAT-AAG--AA-TCAGTGCCTATTATTCC-TTAC-A-TATCGAAACAG-G-A-----AGATA-TTCTA------------------------------TTGCCAGAGAAA--AA-----------CGT----------ATCATT-T-A-------TTGAAAATGAAATAC-ATTTTGAACT----------TCC-------AAATCATGAT-------------CAATGTCATGATCTACATT----AT---------TGAATTTCTTT-A
gi|12 : --AAGA-----TATG-TTTGTACA-TTTT--TG-ATTTTGTATATCTACATT--GATCTA-T-TCAATTT--TGTTAAATTGTACTATTCAT-GAttctaat
gi|13 : aagtcgacagtaatttttttcaaTTCAT-GACTG-TAT-GCTTAACA-TGGTA-ATTTTCAAT
gi|14 : attttttttttaaAACAAAATTAAG--AA-TAAGTGCCCAT----CCATCGT-A-TATTGAAATGG-G-T-----AGATA-TTCTAaaagttatctt
gi|15 : TAC--AAATATTACAGCTGC-AAGA--GGGATCTGTT----GTTTCTTGAAAGAACT--T-C--TTTGA
gi|16 : A-TATTGCTTCCT--TGAATATTTC-CACATACAACTCTGAAATATAA-t
gi|2 : ATTTAAAGGCATA-ACTGGA----AACCATA-AGA----GAGCAT-CAAATCTTTGCTGTC-TG-ATGAATTGGGGG---------TTTTCCTTTTGTATCACTTATGCTTATGA-----------AAAA-ATGTTCAAA-TACTACTTAAGA-TGATAAGAAATACAAAT-GTAAACCAAA-----AGTTACAACAATTATTTAGTGTCGTCTGCATTTAAAGGAAATGAAAATATTCGTATCTAAAA--TATCTT-GCAAAAAAGAAAAC----TGTCCT----CTGATTAGACTGCAAACAGACT--AA-TATTGCTTCCT----AATA--------ATAT--CTCTGAAATAT-A-ATTACAAG--AACCCTACTCAAAAAA-CAAGA------AACAA-C-GAAGTAAATACAAA-AAGTCAGA-CTG-TGGAA---CAA--TA-GGTTTTTAATGTAAATATCGTAAATC-AAAA----TGAAA--TA--CAAATT---AACAAGAA-TT--ATTGGAGGCT--ACCTTTTT--ATAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAGCCAT-TAATGGTCC-T----TCATTGTAA-TATTGAACCAG-G-T-----AGATA-TTCTAA--A--------------CCC-----CC-ATT--CAAAGAAA--AC-GTCTTTTGCTTTTT-CAT-GTAGA-TG-T-T-A-------TTGAAGATGAGAAAC-ATTTTGTA-T--ATA--TG-TT---------AAATATGAA-------------CAA-G-CA-GAT-GGCAGT----ATA-------ATG-A-CTATTT-AATCGTTAACACA---ATAA-CTTGT-GA-T-GACTCCCATATTCGGAAAACATGGTT-AATCCTAC--AAATA-TACAAATGC-AAGA--AGAACATGTT----TACATTTGAA--AA
gi|3 : AAAATCTT-GTATC-AAAA--TTTCTTTGT--CAAAAGAAAC----TGTCCT----C--ATT--ACTGCAA--AAACTTGAACTATTG-TTCCT--T-AATATTTCAC-CATACAACTCTGAAATATAA-ATTAAAAAGAAACACTACCCC-AAAA-CAAAACCATG-AACAA-CTGGAA--GATATAAGTAAATCGGAACTG-TGGAA---AA--TTA-G-TTTTTATAG--AAAATCGTAAATCAAAA-----TG-AA--TA--TAAACTGC-AAC----A-TT--TATTGAGGCT--ACC--TTT--AAGAAA-TGTG-AGGAGGTCTGTAC-AACAAA-TTAAG--AAATAAGTGCCCAT----CCAT-GT-A-TATTGAAACGG-GAT-----AG-TA-TTCTAA--A-------------CCCC-----CCCACTCCCAAAGAAA--C--GTC-TTTGC-TGTTTCAT-GTAGATTGTT-TTA-------TTGAAGATGAAAAACCATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAAG------------CAATG-CA-GAT-GGCAGT----ATAT------ATG-ATTTATTT-AAT-GTTAACACA--TAT-AACTTGTTGA-TTGA--CCCA-ATAAGGAAA--ATTGTTTAATCCTAC--AAATATTACAAATGCAAAGA--AGAAC-TG------TTTACTTGAA--AACTTGTGT--TTTAAATTAAGAAAAG-AAAATCCAAGAGGTAAATGTT--AAGAGAGAGTATA-GT-GTACT-CTTCAGTG-ATTTTATATATCTACATTTGAATCTG-T-TTAATTT--TG-T--ACTGTACTTTTCATGGACTGCTATCGCT-AACA-T-GTATATTGTCAAT
gi|4 : aTTTAAAGGCATA-CTTGGA----ATACATAGAGA----G-GCAT-CAAATC-TTGCTGTCTTGTATGAATTGGGGAG--------TTTTCC-TTTGTATCACTTATG-TTATGA-----------AAA-TATGTTCAAA-TACTACTTAAGATTGA-AAGAAATA-GAAT-GTAAAC--AA-----AATTACAACAATTATTTAGTGTCGTCTGCATTTAAAGAAGATGAAAATCTT-GTATCTAAAA--TATCTTGGC--AAAAG-AAAC----TGTCCT----C--ATT--ACTGCAA--AAACT-GAA-TATTGCTTCCTAATGAATA--------------CTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAGA------A-CAA-CTGAAG--AATACAAGTAAATCAGA-CTG-TGGAA---AA--TTA-GGTTTTTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA--CAAATTAC-AAG----A-TT--ATTTGAGGCT--ACC--TTT--TAAAAAATGTG-AT-AGATCTGTGCCATCAAAATTAAG--AA-TAAGTGTCCAT----TCATTGT-A-TATTGAAACAG-G-T-----AGATA-TTCTAA--A--------------CCC-----CC-ATTCCCAAAGAAA--AACGTC-TTTGC-TTTT-CAT-GTAGATTGTT-T-A-------TTGAAGATGAAAAAC-ATTTTGTATT--ATAT-TG-TTC-------AAAGTATGAA-------------CAATG-CA-GAT-GGCAGT----ATA-------ATG-ACTTATTT-AAT-GTTAACACA--TAT-A-CTTGT-GA-T-GA--CCCA-ATTCGGAAA--ATGGTT-AATCCTAC--AAATATTACAAATGC-AAGA--AGAACATG-------TTACTTGAA--AAa
gi|5 : AAATCAGA-CTG-TGGAA---A---TT--GCTTATTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA---AAACTGCGAAC----AATT--ATTT-AGGC---ACC--TTT--AAGAACATGTG-AT-AGGTCT-T-CTAACAAA-TGAAG--A--TAATTGCC-AT----CCATTGTGA-TATTGAAACGGAG-T-----A-ATACTTCTAACCA-------------CCCCCCCCCCC-ACT-CCAAAGAAA--AACGTC-TTTGC-TGTT-CAT-GTAGA-TGTTAT-A-------TTGAAGATG-AAAAC-A-TTTGTA-T--ATATATG-TTC-------AAAGTATGAG-------------CAATG-CA-GAT--GCAGT----GTA-------ATA-CTTTATTTAAAT-GTTAACACAACTAT-A-CTTGT-GACT-GA--CCCG-ATAA-GAAA--ATTGTT-AATCCTACCAAGATATTACAAAT-C-AAGAGCGAAACATGTT----GTTACTTGGA--AACT--TGCTATTTTAATTAAGAAAAGAAAAAT-CAAG-AGTAAATGTT--AAAA-----TATA-TT-TTACA-TTTCACTG-A-TTTAGATATCTACACT--GAGCTGCT-TTAATTT--TGTT---TTGTAC-TTTCAC-GA-TG-TAT-GCT-AACATTGGTA-ATTGTCAAT
gi|6 : CCT--TGAATATTTC-C-CATACAACTCTGAAATATAA-ATTACAAG--AACACTACC---AAAA-CAAG--------------TGAAG--AATATA--TAA-TCAGA-ATG-GAGAATGGAGACTTT-GCTTTTTATAGTAAAA-TCGTAAATCAAAA-----TG-AA--TA--CAAATTGC-AAC----A-TT--ATTTGAGACT--ACT--TTTTAAAAAAAATGTG-AT-AGTTCAGTGTTAACAAAATTAAG--AA-TAAGTGTCCAT----TCAGTGT-A-TATTGAAACGG-G-TGGATAGGATA-TTCTAA--ACCAACCCTCCCCCCCCC-----CC-AATTCCAAAGAAA--GC-GTC-TTTGC-TGTT-CATGGTATATTGTT-T-A-------ATGAA-ATG-AAAAC-ATTTTGTATT--ATAT-T--TTCA------AAAGTATGAA-------------CAATG-CA--AT--GCAGTAAGAATA-------ATG-A-TTGTTT-AAT-G-TAACACAT-TAT-A-CTTGT-GA-T-GA--CCCA-ATTAGG-AA--ATTG-T-AATCCTAC--AAACATTAC-AATG--ATGA--AGAACATGTT----GATACTTGCA--AACT--TGC--Taaagttatt
gi|7 : TAATTGTTCTCGGCCGAAATTATGTTGAAATTTATATCAGTCCAT-GATAATACCAATTATCACC-----------TATGGAT--CTGATT---------------------CAG-ATCAATTTCCTCTTGAAAAAACACAACATCTTATATTTAAAGACATA-CTTGGAGTATATACGCAGAAA----G-GCAT-CAAATC-TTGTTGTCTTGTATGAATTAGGGACTAAGGGTGCTTTCT-TTTGTATTACTTATG-TAATGAAAATACGGGTGAAAATATGTTCAAA-TACTATATAAGATTGA-AATAAATA-GAAC-GTAAAC--AAGATTCAGTTGCAACAATTATTTTGTGTT-------------GAAGATAAAAATATT-GTATCTAAAA--TATCTTGAC---AAAGGAAACTGCATGTCCTCATGC--ATT--ACTGCAA--AAACT-GAA-TATTGCTTCCT--
gi|8 : taaatt------AACAAATTGAA---AACACAA--AAGT-AAA-CTGGT-------AAA-TTATATTTTTTACAGTACTATTC------TAAAAACTGCTG-AAACTATCCAAATT-C-AAA----A-TC--AT------CT--AAC--TTT--AACAA--TTTC-A--AAATCTAT-----CAAGATTAAG--GA-TAAGTACACAT----CAGTTAT-A-TATTGAAACTG-G-C-----AGATA-TTGTAA--A-------------CCAC-----CT-ATTCCTAGAGAAAATAA-ATA--TTGT-TATC-CCT-GTACA-TGTA-T-AAATCTAGTCAAAGAAGAATTAC-ATTTTCTGTTGAATAC-TGAATCTATAGAGAAAATATGAAGATGTTTCTGTACTAATA-CA-TGT-AACAAT----ATATCAGTATATG-ATTTACTT-AAT-
gi|9 : gaaataaactGT----TTA-------ATG-ATATATTT-AGT-GTTAACACA--TAT-A-CTAGT-GA-T-GA--TCCA-ATTTGAAAA--ATTGTC-AATCCTAC--AAATATTACATCTGC-AAAA--GGGGCATGTTAATGTTT-CTTAAA--AACC--TGC--TTTATA-TAAGAAAAG-AAAGT-C-TGCAATGAATGTT--GAGA-----TATACTT-ATGCA---TAAATATATGTTATATA--TATATT--CA-CTA-CAGTAATTT--TG