lowQualScore : 1 1 66666666666666 44 11 222222 11 3333333 1 11111 11 111 444 1 555555 444444444 2 11 55555555555555 1 1 111 22222 11 222222 3333 1 777 1 44444444 11 1 88888888 2 2222 3333333333333 555 1111 4 111 2222 44444 1 3333 111 1 555 2 6666666 1
lowQualScore : 7 3 5 11111111111111 33 11 8 8 999999 8 22 2 3 9999999 3 0 55555 11 99 6 33 111 6 000 7 3 9 222222 6 777777777 44 8 0 33 33333333333333 0 0 3 9 0 111 3 99999 88 555555 0000 3 7 000 7 3 77777777 99 3 99999999 6 6 4444 66 5 99 4444444444444 5 000 9999 4 3333 77 4 5 6 99 99 6 0 8 666 8 4444 55555 0 0000 111 0 2 111 7 4444444 4 0
lowQualScore : . . . .............. .. .. . . ...... . .. . . ....... . . ..... .. .. . .. ... . ... . . . ...... . ......... .. . . .. .............. . . . . . ... . ..... .. ...... .... . . ... . . ........ .. . ........ . . .... .. . .. ............. . ... .... . .... .. . . . .. .. . . . ... . .... ..... . .... ... . . ... . ....... . .
lowQualScore : 3 3 0 66666666666666 00 00 0 0 000000 0 55 2 2 0000000 2 0 88888 00 22 7 88 777 7 888 2 2 8 888888 7 666666666 00 0 0 22 88888888888888 0 0 2 2 2 000 2 88888 00 222222 0000 3 3 000 3 3 00000000 77 3 77777777 7 7 3333 99 0 11 2222222222222 0 666 7777 4 9999 99 3 7 7 22 22 7 0 0 888 0 8888 00000 0 0000 000 0 5 222 5 5555555 0 0
consensus : NTGTGGCGCAGGTCA-TCCCGTTTA---T-TGGT--TCATTTTCGATG-ACCC--GTG-ACA-CTT-A--TNACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CTACTGG-G-AT-TT--GAACAACCAA-CCTTCTGC-ATGC-TAG-GCAAA--ACGATT-CTGACTG-ACTGCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATG-----TTTTTTT-AA-TTG-TGACTTTTTGAC---ACCTGTGTTTATTATA-TA-G-C--ATTACTN-TT-GAAAGTT----TAT-GAAACAANCGCCC-GTGAA--TATAAC--TG-CTTTTCCAAAGCT-----TATATT--CAG-TAAA--GGAA--G-AAT-ATG----AAG--TGCATT-ATA-A--TA--T-ACA-TG-CAAA-T-AGCT-TTAACAA--TTTTA----AA-GAAAGGANGCAA-T-TCA-ACG---TCAACCCAGCCTAC--CANANCACT-GTCT
Reference ( gi|2 ) : ATGTGGCACAGGTCA-TCCCGTTT----T-TGGT--TCATTTTCGAT--ACCC--GTG-ACA-CTT-A--TAACACC-TGTTACC-GGACATTC-GCCAGTTTGCAG-CCGT-GAATACG--AGTCT--GTCA-CCACTGG-G-AT-T---GAACAACCAAACCTTCTGCAATGCCTAG-GCAAA--ACGATT-CTGACTG-ACTGCCA-GT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATG-----TTTTTTTTAAATTG-TGACTTTTTGACAAGACCTGTGTTTATTATA-TA-G-C--ACTACTTGTT-GAAAGTTTTTCTATCGAAACAAGCGCCC-GTGAA--TCTAAC--TG-CTTTTTCAAAGCT-----T-TA-T--CAG-TAAAGCGGAA--G-AAT-ATG----AAG--TGGATT-ATA-A--TA--T-ACAGTG-CAAA-T-AGCT-TTAAC-A--TTTT-----AA-GAAAGGGAG-AA-T-TCA-ACGGTCTCAACGCAGCCTATCATAAATCACT-GTCT
gi|1 : TGTGGCGCAGGTCAATCGCGTTT----A-TAATGGTCATTTTCGATCAACCTCGGTGCACG-TTG-A--TAACAACATGTTACCTGGGCATTC-GC-A--TTGCAGGCCGT-GA-TACGTAAGTCT--GTCA-CCACTGGTG-AT-TTTGAAACAAGC-TACCTTCTGC-ATG-CTAG-GCAAT--ACGA-T-CTGACTG-ACTGCCA-GT-ACCTG-C----------GCTAATGCTT-TTGAATGAAGAACAATGAAGT-TTATA--TATCGGACTGCATT-----TTTTTTTAAAATTGTTGACTGTTTGAC---ACCTGTG-TTATTAAA-TATG-CATATTACTT-TT-GAAAGTT----TAT-GAAACAGCCGCCC-GTGAA--TATAAC--TG-CTTTTC--AAGCT-----T-TATT--CAG-TAAAG-GGAATGA-AATGATGA---AAG--TGGATT-ATA-A--TA--T-ACA-TGCCAAATT-AGCT-TTAACAA--TTTTA----AA-GAAAGGTGA-AA-T-TCATA----CTCAACTCAGCCTAC----AGTCACT-GTCT
gi|3 : acGTGGCACAGG-CA-TCC-GTTA----T-AGGT----ATTTTCGATC-ACCC--GT--ACA-CTT-AGATAACACC-T-TTACC-GGGAATTCAGCCA--TTGCAG-CCGTTGAATACG--AGTCTTGGTCAACCACTGG---AT-TTT-GAACCAC-AATCCTTCTGCA-TGC-TAG-GCAAA---CA--T-CTGA-TG-ACTGCCACGTTACCG-CC----------GCTAA-TCTT-T-GAATGAAGA-CAAAGAA-T-TTATAA-TA-CGA--TGCATG-----TTTTTTT-AATTTG-TGAC-TTTTGAC---ACCTGTGTTATTTATA-TA-GCC--ATAACTATTT-GAAAGTT----TAT-GAAACAAGCGCCCGGTGAA--TATAACTGTG-CTTTCTCAAAGCT-----T-TATT--CAG-TAA---GGAA--GAAAT-ATG----AA---TGGATT-ATA-A--TA--T-ACA-TG-CAAA-T-AGCT-TTAAC-AAGTTTTA----AA-GAAAGGATG-AA-TATCA-ACGG--TCAACCAAGCCTAC-----ATCACT-GTCTg
gi|7 : TGGCACAAGTCA-TTC-GTTTA---TATGGT---CATTTCCGATG-ACCC--GTG-ACA-CTTGA--TCACACC-TGTTACC-GGGCATTC-GGCA--TTGCAG-CTGT-GAATACG--AGTCT--GTCA-CTACTTG-G-AT-TT--GAACAACCAA-CCTTCTGCA-TGC-TAG-GCAAA---CGAT--CTAACTG-ACTGCCACGT-ACC-GCC----------GCTAA-GCTT-TTGAATGAAGACAAAGGAA-T-TTATAT---ACGGACTGCATA-----TTt
gi|12 : CCGTTTATATT-TG----TAATTTTCAATG-ACCC--GTG-ACA-CTTAA--TCACACC-TGTTAC
gi|6 : t-TGGT----ATTTCCAATG-ACCC--GTG-ACATCTT------------TGATGC----ACA-----CCTGTT---AA-CCG--------G--A--CT--GTCG-CT-CTGG-GTAT-TT--GAATCACCCAACCTT-TGCC-TGC-TAG-GCAAATAAC--TTGCTGATTATGCTGCCA-GT--CCGCCCCCGGAGACTGGCCAA-GCTTCTTGAATAAAGAACCAGGAA-TATTA-ATATAATGG--TGCATGTTTGCTTTTTTTT---TTT-TGTTTTTTTG
gi|8 : gttaactgagtata--AGTCT--GTCG-CGGCCGG-G-AT-TC--GAAC-ACCAA--CTTCCGC-ATG--TGGAGC-GA--ACG-CT-CTAAC-G-ACTGttttttttgg
gi|17 : tgtgtaacactta--GTCA-CTACTGG-G-ATGT---GAACACCCAA-CCTTCTGC-ATA-CTAG-GCAAagccaccgc
gi|4 : TGTGTATATTATAATA-T-T--A-TAGTCGTTTGCAAGTTT----ATGAAAACAATCTCTCTGTGAAAATATAAC--TGACTTTTCTAAAGCTGTGTGTATA-T--CAAATAA---GGAA----AAT-ATG----AAGCATGCATT--TATA--TA--TTACA-TG-CAAA-TTAGCT-TTAACAA--TTTTTATAAAA-GAAAGGATGCAA-T-TCA-ACG---TCAAC-CAGCCT-TAACAGAACACT-GTCT
gi|13 : TAAC--TG-C-TTTTCAAAGCT-----T-TATT--CAG-TAAA--GGAA--G-AAA-ATG----AAG--TGCATT-gcttatttgctactttgaataccagtgacactttgactttgacccaattgccaatattcaaaggggaactattcgtcccatggtggtccatatgttagattcatggctagatcataagggtaaaaaatgaagtaattgctcttgagccctgacaata
gi|16 : taTAAC--TG-CTTTTCAAAAGCT-----TATT-T--CAG-TAA---GGAA--G-AAT-TTG----A
gi|15 : atatatTAAC--TG-CTTTTCAAAAGCT-----TATT-T--CAG-TAA---GGAA--G-AAT-TTG----A
gi|9 : atatatAAC--TG-CTTTTTCAAAGCT-----T--A-TTCCAG-TAAAG--GAA--G-AAT-ATG----AAG--TGCATT-ATA-A--TA--T-ACA-TG-CAAA-T-AGCT-
gi|10 : atataAC--TG-CTTTT-CAAAGCT-----T-AA-TT-CAG-TAAAA--GAA--G-AAT-ATG----AAG--TGGAAC-ATA-A--CA--T-ACA
gi|5 : A--A-AAT-ACGCTGTAAG--TGCATTCATA-AATTAAAT-ACA-TG-CAAA---AGCTCTTAAC-A--ATCT-----AAAGAAAGGAAGCAACT-TCA-ACG---TCAAC-CAGCCT-CCCTACAACACTCGTCT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AACAGAGATATATACTGTCTGCTTATTTGATTTGAGTATCAAATGTGACACTTTGACT
Unaligned ( gi|14 ): AACACCCAACCTTCCGCATGCGAGACGAACTCTCTACCGACTGAGCCA
Unaligned ( gi|18 ): TGGCACAAGTTATCGGTTTATATGGTAATTTC
Alignments
lowQualScore : 1 1 333333333 111 22222 1111111 22222 1 11 3333333333 2222 1 1111 222222 1 1 222 111 1 22222222 1 1 2222 1 1 1 1 1 1 111111111 1111 1 111 11111 1 22222 1 33333
lowQualScore : 2 3 0 0 999999999 6 111 6 6 22222 77 6 8 4444444 8 88 5 99 77 77 11 5 5 888 5 0 5 5 5 5 66 1 77777 1 0 5 77 5 88 00 5555555555 8 8 0 5 8 8 0 0000 0 7777 222222 0 0 3 333 9 000 0 33333333 0 1 0 1111 0 0 1 0 0 66 0 4 66 4 4 888888888 7 66 99999 4 2222 66 2 0 5 77 77 5 6 222 6 0 88 77777 44 5 8 8 8 22222 0 8 33333 1 8
lowQualScore : . . . . ......... . ... . . ..... .. . . ....... . .. . .. .. .. .. . . ... . . . . . . .. . ..... . . . .. . .. .. .......... . . . . . . . .... . .... ...... . . . ... . ... . ........ . . . .... . . . . . .. . . .. . . ......... . .. ..... . .... .. . . . .. .. . . ... . . .. ..... .. . . . . ..... . . ..... . .
lowQualScore : 0 2 0 0 000000000 7 777 7 7 77777 77 7 0 8888888 0 88 6 22 99 11 00 7 7 000 0 1 0 0 0 1 99 4 99999 7 1 7 99 0 88 00 0000000000 0 0 8 6 0 0 8 4444 6 0000 555555 0 0 2 333 8 222 0 55555555 0 0 0 2222 0 0 0 0 0 99 0 4 11 4 0 777777777 3 11 22222 0 5555 99 5 0 7 99 99 7 7 555 7 8 88 88888 88 0 0 0 0 00000 0 0 44444 0 0
consensus : NTGTGGCACAGGTCA-TCCCGTTTATA--TGGT-CATTTTCGATGACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AAATCACT-GTCT
Reference ( family-8390 ) : NTGTGGCGCAGGTCA-TCCCGTTTAT---TGGTTCATTTTCGATGACCC---GTG-ACA-CTT--A--TN-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CTACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGCATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGANGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--ANANCACT-GTCT
gi|1 : TGTGGCGCAGGTCAATCGCGTTTATAA-TGGT-CATTTTCGATCAACCTCGGTGCACG-TTG--A--TA-ACAACATGTTACCTGGGCATTC-GC-A--TTGCAGGCCGT-GA-TACGTAAGTCT--GTCA-CCACTGGTG-ATTTTGAAA-CAAGCTA-CCTTCTGCA-TGC-TAGGCAA--TACGAT--CTGACTG-ACT--GCCA-GT-ACCTGC-----------GCTAATGCTT-TTGAATGAAGAACAATGAAGT-TTATAT--ATCGGACTGCATTT----TTTTTT--AAAATT-GTTGACTGTTTGAC---ACCTGTGTT-ATTAAATATGC-ATATTA----C-TTTT-GAAAGTT----TAT-GAAA-CAGCCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTC--AAGCT-----T-TATTCAGTAAA--GGGAATGA-AATGATGA---AAG--TGGATT-ATA-A--TA--TACA-TGCCAAATT-AGCT-TTAACAA-TTTT----AAAGAAAGG-TGAAA-T-TCATAC-----TCAACTCAGCC-TAC----AGTCACT-GTCT
gi|10 : acA-C--TG-CTTTTC-AAAGCT-----TA-ATTCAGTAAA--AGAA---G-AAT-ATG----AAG--TGGAAC-ATA-A--CA--TACA-g
gi|12 : CCGTTTATATTTG--TAATTTTCAATGACCC---GTG-ACA-CTTA-A--TC-ACACC-TGTTAC
gi|13 : t--TAT-AA-C--TG-CTTTTC-AAAGCT-----T-TATTCAGTAAA--GGAA---G-AAA-ATG----AAG--TGCATT-
gi|14 : AA-CACCCAA-CCTTCCGCA-TGC-GAGACGA--ACT--CT-CT-ACCG-ACT--G
gi|15 : A--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AA--GGAA---G-AAT-TTG----Aagcca
gi|16 : atA--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AA--GGAA---G-AAT-TTG----A
gi|17 : at--GTCA-CTACTGG-G-ATGT--GAA-CACCCAA-CCTTCTGCA-TAC-TAGGCAA--
gi|2 : TGTGGCACAGGTCA-TCCCGTTT-T---TGGTTCATTTTCGAT-ACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGACATTC-GCCAGTTTGCAG-CCGT-GAATACG--AGTCT--GTCA-CCACTGG-G-ATT---GAA-CAACCAAACCTTCTGCAATGCCTAGGCAA--AACGATT-CTGACTG-ACT--GCCA-GT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTTTAAA--TT-GT-GACTTTTTGACAAGACCTGTGTTTATTATATA-GC-AC--TA----CTTGTT-GAAAGTTTTTCTATCGAAA-CAAGCGCCC-G-TGAA--TCT-AA-C--TG-CTTTTTCAAAGCT-----T-TA-TCAGTAAAGCGGAA---G-AAT-ATG----AAG--TGGATT-ATA-A--TA--TACAGTG-CAAA-T-AGCT-TTAAC-A-TTTT-----AAGAAAGGGAG-AA-T-TCA-AC-GGTCTCAACGCAGCC-TATCATAAATCACT-GTCT
gi|3 : aGTGGCACAGG-CA-TCC-GTT-AT---AGGT--ATTTTCGATCACCC---GT--ACA-CTT--AGATA-ACACC-T-TTACC-GGGAATTCAGCCA--TTGCAG-CCGTTGAATACG--AGTCTTGGTCAACCACTGG-A-TTTT--GAA-CCACAAT-CCTTCTGCA-TGC-TAGGCAA--A-CA--T-CTGA-TG-ACT--GCCACGTTACCG-CC----------GCTAA-TCTT-T-GAATGAAGA-CAAAGAA-T-TTATAA-TA-CGA--TGCATGT----TTTTTT--AA--TTTGT-GACTTTT-GAC---ACCTGTGTTATTTATATA-GCCAT--AA----C-TATTTGAAAGTT----TAT-GAAA-CAAGCGCCC-GGTGAA--TAT-AA-CTGTG-CTTTCTCAAAGCT-----T-TATTCAGT-AA--GGAA---GAAAT-ATG----AA---TGGATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAAGTTTT----AAAGAAAGGATG-AA-TATCA-ACGG---TCAACCAAGCC-TAC-----ATCACT-GTCT
gi|4 : TGTGTATATTATA---AT-AT--TATAGTC-GTTT-GCAAGTT----TAT-GAAAACAATCTCTCTG-TGAAAATAT-AA-C--TGACTTTTCTAAAGCTGTGTGTATATCAAATAA---GGAA-----AAT-ATG----AAGCATGCATTTATATA--T---TACA-TG-CAAA-TTAGCT-TTAACAA-TTTTTATAAAAGAAAGGATGCAA-T-TCA-AC-G---TCAA-CCAGCCTTAAC--AGAACACT-GTCTt
gi|5 : A---A-AAT-ACGCTGTAAG--TGCATTCATA-AATTAAATACA-TG-CAAA---AGCTCTTAACAA--TCT----AAAGAAAGGAAGCAACT-TCA-AC-G---TCAA-CCAGCC-TCCCT-ACAACACTCGTCTgcttatttgctactttgaataccagtgacactttgactttgacccaattgccaatattcaaaggggaactattcgtcccatggtggtccatatgttagattcatggctagatcataagggtaaaaaatgaagtaattgctcttgagccctgacaata
gi|6 : TATA--TGGT--ATTTCCAATGACCC---GTG-ACATCTTTGA--TGCACACC-TGTT-----------------------AA-CCG--------G--A--CT--GTCG-CT-CTGG-GTATTT--GAATCACCCAA-CCTT-TGCC-TGC-TAGGCAAATAAC--TTGCTGATTATGCT--GCCA-GT--CCGCCCCCGGAGACTGGCCAA-GCTTCTTGAATAAAGAACCAGGAA-TATTA-ATATAATGG--TGCATGTTTGCTTTTTT--TT--TT-TT-GTTTTTTTGctcattgcatactttggtgaatgtaactccaggcacttgctttgacacccaaattaacaaaacgaacatacattcgtccatgagtagcttccatatgtattgatatcatggttgacgtctaggtaggacagggactcaactgccgtccttggagccctgaaata
gi|7 : gttaactgagTGGCACAAGTCA-TTC-GTTTATA--TGGT-CATTTCCGATGACCC---GTG-ACA-CTTG-A--TC-ACACC-TGTTACC-GGGCATTC-GGCA--TTGCAG-CTGT-GAATACG--AGTCT--GTCA-CTACTTG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGC-A--AACGA-T-CTAACTG-ACT--GCCACGT-ACC-GCC----------GCTAA-GCTT-TTGAATGAAGACAAAGGAA-T-TTATAT---ACGGACTGCATAT----Tttttttttgg
gi|8 : --AGTCT--GTCG-CGGCCGG-G-ATTC--GAA-C-ACCAA--CTTCCGCA-TGT-GGAGC-G--AACG-CT-CTAAC-G-ACTGAGCCAC
gi|9 : tgtgtaacacttaA--TAT-AAAC--TG-CTTTTTCAAAGCT-----TAT-TCCAGTAAA--GGAA---G-AAT-ATG----AAG--TGCATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-cgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACAGAGATATATACTGTCTGCTTATTTGATTTGAGTATCAAATGTGACACTTTGACT
Unaligned ( gi|18 ): TGGCACAAGTTATCGGTTTATATGGTAATTTC
Alignments
lowQualScore : 1 11 111 22222 1111111 22222 1 11 3333333333 2222 1 1111 222222 1 1 222 111 1 22222222 1 1 2222 1 1 1 1 1 1 111111111 1111 1 111 11111 1 22222 1 33333
lowQualScore : 0 8 5 5 5 77 6 111 6 6 22222 88 6 8 4444444 8 88 5 99 77 77 00 5 5 888 5 0 5 5 5 5 66 1 77777 1 0 5 77 5 88 00 5555555555 8 8 0 5 8 8 0 0000 0 7777 222222 0 0 3 333 9 000 0 33333333 0 1 0 1111 0 0 1 0 0 66 0 4 66 4 4 888888888 7 66 99999 4 2222 66 1 0 5 77 77 5 6 222 6 0 88 77777 55 5 8 8 8 22222 0 8 33333 1 8
lowQualScore : . . . . . .. . ... . . ..... .. . . ....... . .. . .. .. .. .. . . ... . . . . . . .. . ..... . . . .. . .. .. .......... . . . . . . . .... . .... ...... . . . ... . ... . ........ . . . .... . . . . . .. . . .. . . ......... . .. ..... . .... .. . . . .. .. . . ... . . .. ..... .. . . . . ..... . . ..... . .
lowQualScore : 8 0 0 7 7 11 7 777 7 7 77777 22 7 0 8888888 0 88 6 22 99 11 66 7 7 000 0 1 0 0 0 1 99 4 99999 7 1 7 99 0 88 00 0000000000 0 0 8 6 0 0 8 4444 6 0000 555555 0 0 2 333 8 222 0 55555555 0 0 0 2222 0 0 0 0 0 99 0 4 11 4 0 777777777 3 11 22222 0 5555 99 0 0 7 99 99 7 7 555 7 8 88 88888 22 0 0 0 0 00000 0 0 22222 4 0
consensus : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AAATCACT-GTCT
Reference ( family-8390 ) : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AAATCACT-GTCT
gi|1 : TGTGGCGCAGGTCAATCGCGTTTATAATG-GT-CATTTTCGATCAACCTCGGTGCACG-TTG--A--TA-ACAACATGTTACCTGGGCATTC-GC-A--TTGCAGGCCGT-GA-TACGTAAGTCT--GTCA-CCACTGGTG-ATTTTGAAA-CAAGCTA-CCTTCTGCA-TGC-TAGGCAA--TACGAT--CTGACTG-ACT--GCCA-GT-ACCTGC-----------GCTAATGCTT-TTGAATGAAGAACAATGAAGT-TTATAT--ATCGGACTGCATTT----TTTTTT--AAAATT-GTTGACTGTTTGAC---ACCTGTGTT-ATTAAATATGC-ATATTA----C-TTTT-GAAAGTT----TAT-GAAA-CAGCCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTC--AAGCT-----T-TATTCAGTAAA--GGGAATGA-AATGATGA---AAG--TGGATT-ATA-A--TA--TACA-TGCCAAATT-AGCT-TTAACAA-TTTT----AAAGAAAGG-TGAAA-T-TCATAC-----TCAACTCAGCC-TAC----AGTCACT-GTCT
gi|10 : acA-C--TG-CTTTTC-AAAGCT-----TA-ATTCAGTAAA--AGAA---G-AAT-ATG----AAG--TGGAAC-ATA-A--CA--TACA-g
gi|12 : CCGTTTATA-TTTGT-AATTTTCAATGACCC---GTG-ACA-CTTA-A--TC-ACACC-TGTTAC
gi|13 : t--TAT-AA-C--TG-CTTTTC-AAAGCT-----T-TATTCAGTAAA--GGAA---G-AAA-ATG----AAG--TGCATT-
gi|14 : AA-CACCCAA-CCTTCCGCA-TGC-GAGACGA--ACT--CT-CT-ACCG-ACT--G
gi|15 : A--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AA--GGAA---G-AAT-TTG----Aagcca
gi|16 : atA--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AA--GGAA---G-AAT-TTG----A
gi|17 : at--GTCA-CTACTGG-G-ATGT--GAA-CACCCAA-CCTTCTGCA-TAC-TAGGCAA--
gi|18 : TGGCACAAGTTA-TCG-GTTTATA-TG-GT-AATTT
gi|2 : TGTGGCACAGGTCA-TCCCGTTT-T--TG-GTTCATTTTCGAT-ACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGACATTC-GCCAGTTTGCAG-CCGT-GAATACG--AGTCT--GTCA-CCACTGG-G-ATT---GAA-CAACCAAACCTTCTGCAATGCCTAGGCAA--AACGATT-CTGACTG-ACT--GCCA-GT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTTTAAA--TT-GT-GACTTTTTGACAAGACCTGTGTTTATTATATA-GC-AC--TA----CTTGTT-GAAAGTTTTTCTATCGAAA-CAAGCGCCC-G-TGAA--TCT-AA-C--TG-CTTTTTCAAAGCT-----T-TA-TCAGTAAAGCGGAA---G-AAT-ATG----AAG--TGGATT-ATA-A--TA--TACAGTG-CAAA-T-AGCT-TTAAC-A-TTTT-----AAGAAAGGGAG-AA-T-TCA-AC-GGTCTCAACGCAGCC-TATCATAAATCACT-GTCTc
gi|3 : aGTGGCACAGG-CA-TCC-GTT-ATA--G-GT--ATTTTCGATCACCC---GT--ACA-CTT--AGATA-ACACC-T-TTACC-GGGAATTCAGCCA--TTGCAG-CCGTTGAATACG--AGTCTTGGTCAACCACTGG-A-TTTT--GAA-CCACAAT-CCTTCTGCA-TGC-TAGGCAA--A-CA--T-CTGA-TG-ACT--GCCACGTTACCG-CC----------GCTAA-TCTT-T-GAATGAAGA-CAAAGAA-T-TTATAA-TA-CGA--TGCATGT----TTTTTT--AA--TTTGT-GACTTTT-GAC---ACCTGTGTTATTTATATA-GCCAT--AA----C-TATTTGAAAGTT----TAT-GAAA-CAAGCGCCC-GGTGAA--TAT-AA-CTGTG-CTTTCTCAAAGCT-----T-TATTCAGT-AA--GGAA---GAAAT-ATG----AA---TGGATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAAGTTTT----AAAGAAAGGATG-AA-TATCA-ACGG---TCAACCAAGCC-TAC-----ATCACT-GTCT
gi|4 : TGTGTATATTATA---AT-AT--TATAGTC-GTTT-GCAAGTT----TAT-GAAAACAATCTCTCTG-TGAAAATAT-AA-C--TGACTTTTCTAAAGCTGTGTGTATATCAAATAA---GGAA-----AAT-ATG----AAGCATGCATTTATATA--T---TACA-TG-CAAA-TTAGCT-TTAACAA-TTTTTATAAAAGAAAGGATGCAA-T-TCA-AC-G---TCAA-CCAGCCTTAAC--AGAACACT-GTCTt
gi|5 : A---A-AAT-ACGCTGTAAG--TGCATTCATA-AATTAAATACA-TG-CAAA---AGCTCTTAACAA--TCT----AAAGAAAGGAAGCAACT-TCA-AC-G---TCAA-CCAGCC-TCCCT-ACAACACTCGTCTgcttatttgctactttgaataccagtgacactttgactttgacccaattgccaatattcaaaggggaactattcgtcccatggtggtccatatgttagattcatggctagatcataagggtaaaaaatgaagtaattgctcttgagccctgacaata
gi|6 : TATA-TG-GT--ATTTCCAATGACCC---GTG-ACATCTTTGA--TGCACACC-TGTT-----------------------AA-CCG--------G--A--CT--GTCG-CT-CTGG-GTATTT--GAATCACCCAA-CCTT-TGCC-TGC-TAGGCAAATAAC--TTGCTGATTATGCT--GCCA-GT--CCGCCCCCGGAGACTGGCCAA-GCTTCTTGAATAAAGAACCAGGAA-TATTA-ATATAATGG--TGCATGTTTGCTTTTTT--TT--TT-TT-GTTTTTTTGctcattgcatactttggtgaatgtaactccaggcacttgctttgacacccaaattaacaaaacgaacatacattcgtccatgagtagcttccatatgtattgatatcatggttgacgtctaggtaggacagggactcaactgccgtccttggagccctgaaata
gi|7 : gttaactgagTGGCACAAGTCA-TTC-GTTTATA-TG-GT-CATTTCCGATGACCC---GTG-ACA-CTTG-A--TC-ACACC-TGTTACC-GGGCATTC-GGCA--TTGCAG-CTGT-GAATACG--AGTCT--GTCA-CTACTTG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGC-A--AACGA-T-CTAACTG-ACT--GCCACGT-ACC-GCC----------GCTAA-GCTT-TTGAATGAAGACAAAGGAA-T-TTATAT---ACGGACTGCATAT----Tttttttttgg
gi|8 : --AGTCT--GTCG-CGGCCGG-G-ATTC--GAA-C-ACCAA--CTTCCGCA-TGT-GGAGC-G--AACG-CT-CTAAC-G-ACTGAGCCAC
gi|9 : tgtgtaacacttaA--TAT-AAAC--TG-CTTTTTCAAAGCT-----TAT-TCCAGTAAA--GGAA---G-AAT-ATG----AAG--TGCATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-cgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACAGAGATATATACTGTCTGCTTATTTGATTTGAGTATCAAATGTGACACTTTGACT
Alignments
lowQualScore : 1 11 111 22222 1111111 22222 1 11 3333333333 2222 1 1111 222222 1 1 222 111 1 22222222 1 1 2222 1 1 1 1 1 1 111111111 1111 1 111 11111 1 22222 1 33333
lowQualScore : 0 8 5 5 5 77 6 111 6 6 22222 88 6 8 4444444 8 88 5 99 77 77 00 5 5 888 5 0 5 5 5 5 66 1 77777 1 0 5 77 5 88 00 5555555555 8 8 0 5 8 8 0 0000 0 7777 222222 0 0 3 333 9 000 0 33333333 0 1 0 1111 0 0 1 0 0 66 0 4 66 4 4 888888888 7 66 99999 4 2222 66 1 0 5 77 77 5 6 222 6 0 88 77777 55 5 8 8 8 22222 0 8 33333 1 8
lowQualScore : . . . . . .. . ... . . ..... .. . . ....... . .. . .. .. .. .. . . ... . . . . . . .. . ..... . . . .. . .. .. .......... . . . . . . . .... . .... ...... . . . ... . ... . ........ . . . .... . . . . . .. . . .. . . ......... . .. ..... . .... .. . . . .. .. . . ... . . .. ..... .. . . . . ..... . . ..... . .
lowQualScore : 8 0 0 7 7 11 7 777 7 7 77777 22 7 0 8888888 0 88 6 22 99 11 66 7 7 000 0 1 0 0 0 1 99 4 99999 7 1 7 99 0 88 00 0000000000 0 0 8 6 0 0 8 4444 6 0000 555555 0 0 2 333 8 222 0 55555555 0 0 0 2222 0 0 0 0 0 99 0 4 11 4 0 777777777 3 11 22222 0 5555 99 0 0 7 99 99 7 7 555 7 8 88 88888 22 0 0 0 0 00000 0 0 22222 4 0
consensus : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AAATCACT-GTCT
Reference ( family-8390 ) : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AAATCACT-GTCT
gi|1 : TGTGGCGCAGGTCAATCGCGTTTATAATG-GT-CATTTTCGATCAACCTCGGTGCACG-TTG--A--TA-ACAACATGTTACCTGGGCATTC-GC-A--TTGCAGGCCGT-GA-TACGTAAGTCT--GTCA-CCACTGGTG-ATTTTGAAA-CAAGCTA-CCTTCTGCA-TGC-TAGGCAA--TACGAT--CTGACTG-ACT--GCCA-GT-ACCTGC-----------GCTAATGCTT-TTGAATGAAGAACAATGAAGT-TTATAT--ATCGGACTGCATTT----TTTTTT--AAAATT-GTTGACTGTTTGAC---ACCTGTGTT-ATTAAATATGC-ATATTA----C-TTTT-GAAAGTT----TAT-GAAA-CAGCCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTC--AAGCT-----T-TATTCAGTAAA--GGGAATGA-AATGATGA---AAG--TGGATT-ATA-A--TA--TACA-TGCCAAATT-AGCT-TTAACAA-TTTT----AAAGAAAGG-TGAAA-T-TCATAC-----TCAACTCAGCC-TAC----AGTCACT-GTCT
gi|10 : acA-C--TG-CTTTTC-AAAGCT-----TA-ATTCAGTAAA--AGAA---G-AAT-ATG----AAG--TGGAAC-ATA-A--CA--TACA-g
gi|12 : CCGTTTATA-TTTGT-AATTTTCAATGACCC---GTG-ACA-CTTA-A--TC-ACACC-TGTTAC
gi|13 : t--TAT-AA-C--TG-CTTTTC-AAAGCT-----T-TATTCAGTAAA--GGAA---G-AAA-ATG----AAG--TGCATT-
gi|14 : AA-CACCCAA-CCTTCCGCA-TGC-GAGACGA--ACT--CT-CT-ACCG-ACT--G
gi|15 : A--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AA--GGAA---G-AAT-TTG----Aagcca
gi|16 : atA--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AA--GGAA---G-AAT-TTG----A
gi|17 : at--GTCA-CTACTGG-G-ATGT--GAA-CACCCAA-CCTTCTGCA-TAC-TAGGCAA--
gi|18 : TGGCACAAGTTA-TCG-GTTTATA-TG-GT-AATTT
gi|2 : TGTGGCACAGGTCA-TCCCGTTT-T--TG-GTTCATTTTCGAT-ACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGACATTC-GCCAGTTTGCAG-CCGT-GAATACG--AGTCT--GTCA-CCACTGG-G-ATT---GAA-CAACCAAACCTTCTGCAATGCCTAGGCAA--AACGATT-CTGACTG-ACT--GCCA-GT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTTTAAA--TT-GT-GACTTTTTGACAAGACCTGTGTTTATTATATA-GC-AC--TA----CTTGTT-GAAAGTTTTTCTATCGAAA-CAAGCGCCC-G-TGAA--TCT-AA-C--TG-CTTTTTCAAAGCT-----T-TA-TCAGTAAAGCGGAA---G-AAT-ATG----AAG--TGGATT-ATA-A--TA--TACAGTG-CAAA-T-AGCT-TTAAC-A-TTTT-----AAGAAAGGGAG-AA-T-TCA-AC-GGTCTCAACGCAGCC-TATCATAAATCACT-GTCTc
gi|3 : aGTGGCACAGG-CA-TCC-GTT-ATA--G-GT--ATTTTCGATCACCC---GT--ACA-CTT--AGATA-ACACC-T-TTACC-GGGAATTCAGCCA--TTGCAG-CCGTTGAATACG--AGTCTTGGTCAACCACTGG-A-TTTT--GAA-CCACAAT-CCTTCTGCA-TGC-TAGGCAA--A-CA--T-CTGA-TG-ACT--GCCACGTTACCG-CC----------GCTAA-TCTT-T-GAATGAAGA-CAAAGAA-T-TTATAA-TA-CGA--TGCATGT----TTTTTT--AA--TTTGT-GACTTTT-GAC---ACCTGTGTTATTTATATA-GCCAT--AA----C-TATTTGAAAGTT----TAT-GAAA-CAAGCGCCC-GGTGAA--TAT-AA-CTGTG-CTTTCTCAAAGCT-----T-TATTCAGT-AA--GGAA---GAAAT-ATG----AA---TGGATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAAGTTTT----AAAGAAAGGATG-AA-TATCA-ACGG---TCAACCAAGCC-TAC-----ATCACT-GTCT
gi|4 : TGTGTATATTATA---AT-AT--TATAGTC-GTTT-GCAAGTT----TAT-GAAAACAATCTCTCTG-TGAAAATAT-AA-C--TGACTTTTCTAAAGCTGTGTGTATATCAAATAA---GGAA-----AAT-ATG----AAGCATGCATTTATATA--T---TACA-TG-CAAA-TTAGCT-TTAACAA-TTTTTATAAAAGAAAGGATGCAA-T-TCA-AC-G---TCAA-CCAGCCTTAAC--AGAACACT-GTCTt
gi|5 : A---A-AAT-ACGCTGTAAG--TGCATTCATA-AATTAAATACA-TG-CAAA---AGCTCTTAACAA--TCT----AAAGAAAGGAAGCAACT-TCA-AC-G---TCAA-CCAGCC-TCCCT-ACAACACTCGTCTgcttatttgctactttgaataccagtgacactttgactttgacccaattgccaatattcaaaggggaactattcgtcccatggtggtccatatgttagattcatggctagatcataagggtaaaaaatgaagtaattgctcttgagccctgacaata
gi|6 : TATA-TG-GT--ATTTCCAATGACCC---GTG-ACATCTTTGA--TGCACACC-TGTT-----------------------AA-CCG--------G--A--CT--GTCG-CT-CTGG-GTATTT--GAATCACCCAA-CCTT-TGCC-TGC-TAGGCAAATAAC--TTGCTGATTATGCT--GCCA-GT--CCGCCCCCGGAGACTGGCCAA-GCTTCTTGAATAAAGAACCAGGAA-TATTA-ATATAATGG--TGCATGTTTGCTTTTTT--TT--TT-TT-GTTTTTTTGctcattgcatactttggtgaatgtaactccaggcacttgctttgacacccaaattaacaaaacgaacatacattcgtccatgagtagcttccatatgtattgatatcatggttgacgtctaggtaggacagggactcaactgccgtccttggagccctgaaata
gi|7 : gttaactgagTGGCACAAGTCA-TTC-GTTTATA-TG-GT-CATTTCCGATGACCC---GTG-ACA-CTTG-A--TC-ACACC-TGTTACC-GGGCATTC-GGCA--TTGCAG-CTGT-GAATACG--AGTCT--GTCA-CTACTTG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGC-A--AACGA-T-CTAACTG-ACT--GCCACGT-ACC-GCC----------GCTAA-GCTT-TTGAATGAAGACAAAGGAA-T-TTATAT---ACGGACTGCATAT----Tttttttttgg
gi|8 : --AGTCT--GTCG-CGGCCGG-G-ATTC--GAA-C-ACCAA--CTTCCGCA-TGT-GGAGC-G--AACG-CT-CTAAC-G-ACTGAGCCAC
gi|9 : tgtgtaacacttaA--TAT-AAAC--TG-CTTTTTCAAAGCT-----TAT-TCCAGTAAA--GGAA---G-AAT-ATG----AAG--TGCATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-cgc
blockSeqs : . C . T TC G . . T AGA GC . . GCCAGT . TT A . TG AA . T T T A A C G AT C GATT G T GA C TA GG CCGGAGACTG . C A . A ATAA A TTGC TAAA T . T AAG T TA C TATAGT T G T TTTC C A G T G AA T A TG A A GTGTGTATA A GC GA . CTGT CA G T T AT AA G . TT C GT TATAA GA C C A . GGTC C T CATAA T C
blockSeqs : . C . . A C . . . TGA C . . AGCCA . T A . . A . . T . . . . A . A TTG G . . C A GC . . . A . . TAA A . AA . . T . A TA . TA . A . . . . G . . . T . . . A TAA A . G . . . C C . . . . . T . T A AT C . . . GG C . CTAC T .
blockSeqs : . . . . A G . . . AA A . . GGCA . T A . . A . . T . . . . A . A GAT G . . C A G . . . C . . TA . . TT . . . T . . AA . T . . . . T . . . . . . . C TTA A . G . . . G . . . . . . T . T A AT . . . . G . . CAG A .
blockSeqs : . . . . C G . . . GA A . . . . . . . . G . . T . . . . A . A GCT A . . . . G . . . . . . A . . . . . . . C TAT A . G . . . G . . . . . . T . . . AA . . . . G . . . A .
blockSeqs : . . . . . . . . A C . . . A . . C . . . . A . A CT A . . . . . . . . T TAT A . G . . . C . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . AT . . . . . . . . C TTA . . G . . . C . . . . .
blockSeqs : . . . . . . . . . . . . TTA . . A . . . C .
blockSeqs : . . . . TAT . . G . .
blockSeqs : . . .
blockSeqCons : *** GA*** GCA**** ** T** TA** G**** **** T** AN G**** CAG**
originalCons : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTG-ACA-CTT--A--TA-ACACC-TGTTACC-GGGCATTC-GCCA--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATAT-TAACGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AAATCACT-GTCT
finalCons : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTG-ACA-CTTGA---TA-ACACC-TGTTACC-GGGCATTCGCA----TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TTATATTA--CGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGAC---ACCTGTGTTTATTATATA-GC-AT--TA----C-TNTT-GAAAGTT----TAT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAA--GGAAG----AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAAT--AGCT-TTAACAA-TTTT----AAAGAAAGGANGCAA-T-TCA-ACG----TCAACCCAGCC-TACCAG--ATCACT-GTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACAGAGATATATACTGTCTGCTTATTTGATTTGAGTATCAAATGTGACACTTTGACT
Alignments
lowQualScore : 1 11 111 11 2222222 22222 1 11 3333333333 1111 1 1111 222222 1 1 222 111 1 22222222 11 1 2222 1 1 1 1 1 1 111111111 1111 1 111 11111 1 22222 1 22222222
lowQualScore : 0 8 5 5 5 77 6 111 55 77 88 6 8 8888888 8 88 5 99 77 77 00 5 5 888 5 0 5 5 5 5 66 1 77777 1 0 5 77 5 88 00 5555555555 8 8 0 5 8 8 8 1111 0 7777 222222 0 0 3 333 9 000 0 33333333 11 0 1111 0 0 1 0 0 66 0 4 66 4 4 888888888 7 66 99999 4 2222 66 1 0 5 77 77 5 6 222 6 0 88 77777 44 5 8 8 8 22222 0 8 88888888 8
lowQualScore : . . . . . .. . ... .. .. .. . . ....... . .. . .. .. .. .. . . ... . . . . . . .. . ..... . . . .. . .. .. .......... . . . . . . . .... . .... ...... . . . ... . ... . ........ .. . .... . . . . . .. . . .. . . ......... . .. ..... . .... .. . . . .. .. . . ... . . .. ..... .. . . . . ..... . . ........ .
lowQualScore : 8 0 0 7 7 11 7 777 88 77 22 7 0 8888888 0 88 6 22 99 11 66 7 7 000 0 1 0 0 0 1 99 4 99999 7 1 7 99 0 88 00 0000000000 0 0 8 6 0 0 0 6666 6 0000 555555 0 0 2 333 8 222 0 55555555 00 0 2222 0 0 0 0 0 99 0 4 11 4 0 777777777 3 11 22222 0 5555 99 0 0 7 99 99 7 7 555 7 8 88 88888 88 0 0 0 0 00000 0 0 44444444 0
consensus : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTGACAC--TT-GATA-ACACC-TGTTACC-GGGCATTCGG-C-A--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TT-ATATTA-CGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGACA---CCTGTGTTTATTATATA-GC-AT--TA----CTT-TT-GAAAGTTT----AT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAAG--GAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGATGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AGATCACT-GTCT
Reference ( family-8390 ) : NTGTGGCACAGGTCA-TCCCGTTTATA-TG-GT-CATTTTCGATGACCC---GTGACAC--TT-GATA-ACACC-TGTTACC-GGGCATTCG--C-A--TTGCAG-CCGT-GAATACG--AGTCT--GTCG-CCACTGG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGCAA--AACGATT-CTGACTG-ACT--GCCACGT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TT-ATATTA-CGGACTGCATGT----TTTTTT--AA--TT-GT-GACTTTTTGACA---CCTGTGTTTATTATATA-GC-AT--TA----CTN-TT-GAAAGTTT----AT-GAAA-CAANCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTCCAAAGCT-----TATATTCAGTAAAG--GAA---G-AAT-ATG----AAG--TGNATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAA-TTTT----AAAGAAAGGANGCAA-T-TCA-AC-G---TCAACCCAGCC-TACC--AGATCACT-GTCT
gi|1 : TGTGGCGCAGGTCAATCGCGTTTATAATG-GT-CATTTTCGATCAACCTCGGTG-CACG-TT-GATA-ACAACATGTTACCTGGGCATTCG--C-A--TTGCAGGCCGT-GA-TACGTAAGTCT--GTCA-CCACTGGTG-ATTTTGAAA-CAAGCTA-CCTTCTGCA-TGC-TAGGCAA--TACGAT--CTGACTG-ACT--GCCA-GT-ACCTGC-----------GCTAATGCTT-TTGAATGAAGAACAATGAAGT-TT-ATATAT-CGGACTGCATTT----TTTTTT--AAAATT-GTTGACTGTTTGACA---CCTGTGTT-ATTAAATATGC-ATATTA----CTT-TT-GAAAGTTT----AT-GAAA-CAGCCGCCC-G-TGAA--TAT-AA-C--TG-CTTTTC--AAGCT-----T-TATTCAGTAAAG--GGAATGA-AATGATGA---AAG--TGGATT-ATA-A--TA--TACA-TGCCAAATT-AGCT-TTAACAA-TTTT----AAAGAAAGG-TGAAA-T-TCATAC-----TCAACTCAGCC-TA-C--AG-TCACT-GTCT
gi|10 : acA-C--TG-CTTTTC-AAAGCT-----TA-ATTCAGTAAAA--GAA---G-AAT-ATG----AAG--TGGAAC-ATA-A--CA--TACA-g
gi|12 : CCGTTTATA-TTTGT-AATTTTCAATGACCC---GTGACAC--TT-AATC-ACACC-TGTTAC
gi|13 : t--TAT-AA-C--TG-CTTTTC-AAAGCT-----T-TATTCAGTAAAG--GAA---G-AAA-ATG----AAG--TGCATT-
gi|14 : AA-CACCCAA-CCTTCCGCA-TGC-GAGACGA--ACT--CT-CT-ACCG-ACT--G
gi|15 : A--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AAG--GAA---G-AAT-TTG----Aagcca
gi|16 : atA--TATTAA-C--TG-CTTTTCAAAAGCT-----TAT-TTCAGT-AAG--GAA---G-AAT-TTG----A
gi|17 : at--GTCA-CTACTGG-G-ATGT--GAA-CACCCAA-CCTTCTGCA-TAC-TAGGCAA--
gi|18 : TGGCACAAGTTA-TCG-GTTTATA-TG-GT-AATTT
gi|2 : TGTGGCACAGGTCA-TCCCGTTT-T--TG-GTTCATTTTCGAT-ACCC---GTGACAC--TT--ATA-ACACC-TGTTACC-GGACATTCG--CCAGTTTGCAG-CCGT-GAATACG--AGTCT--GTCA-CCACTGG-G-ATT---GAA-CAACCAAACCTTCTGCAATGCCTAGGCAA--AACGATT-CTGACTG-ACT--GCCA-GT-ACCGGCC----------GCTAA-GCTT-TTGAATGAAGAACAAGGAA-T-TT-ATATTAACGGACTGCATGT----TTTTTTTAAA--TT-GT-GACTTTTTGACAAGACCTGTGTTTATTATATA-GC-AC--TA----CTTGTT-GAAAGTTTTTCTATCGAAA-CAAGCGCCC-G-TGAA--TCT-AA-C--TG-CTTTTTCAAAGCT-----T-TAT-CAGTAAAGCGGAA---G-AAT-ATG----AAG--TGGATT-ATA-A--TA--TACAGTG-CAAA-T-AGCT-TTAAC-A-TTTT-----AAGAAAGGGAG-AA-T-TCA-AC-GGTCTCAACGCAGCC-TATCATAAATCACT-GTCTc
gi|3 : aGTGGCACAGG-CA-TCC-GTT-ATA--G-GT--ATTTTCGATCACCC---GT-ACAC--TTAGATA-ACACC-T-TTACC-GGGAATTCAGCC-A--TTGCAG-CCGTTGAATACG--AGTCTTGGTCAACCACTGG-A-TTTT--GAA-CCACAAT-CCTTCTGCA-TGC-TAGGCAA--A-CA--T-CTGA-TG-ACT--GCCACGTTACCG-CC----------GCTAA-TCTT-T-GAATGAAGA-CAAAGAA-T-TT-ATAATA-CGA--TGCATGT----TTTTTT--AA--TTTGT-GACTTTT-GACA---CCTGTGTTATTTATATA-GCCAT--AA----CTA-TTTGAAAGTTT----AT-GAAA-CAAGCGCCC-GGTGAA--TAT-AA-CTGTG-CTTTCTCAAAGCT-----T-TATTCAGT-AAG--GAA---GAAAT-ATG----AA---TGGATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-TTAACAAGTTTT----AAAGAAAGGATG-AA-TATCA-ACGG---TCAACCAAGCC-TAC-----ATCACT-GTCT
gi|4 : TGTGTATATTATA---AT-AT--TATAGTCGT-TT-GCAAGTTT----AT-GAAAACAATCTCTCTG-TGAAAATAT-AA-C--TGACTTTTCTAAAGCTGTGTGTATATCAAATAA-G--GAA-----AAT-ATG----AAGCATGCATTTATATA--T---TACA-TG-CAAA-TTAGCT-TTAACAA-TTTTTATAAAAGAAAGGATGCAA-T-TCA-AC-G---TCAA-CCAGCCTTAAC--AGAACACT-GTCTt
gi|5 : A---A-AAT-ACGCTGTAAG--TGCATTCATA-AATTAAATACA-TG-CAAA---AGCTCTTAACAA--TCT----AAAGAAAGGAAGCAACT-TCA-AC-G---TCAA-CCAGCC-TCCCT-ACAACACTCGTCTgcttatttgctactttgaataccagtgacactttgactttgacccaattgccaatattcaaaggggaactattcgtcccatggtggtccatatgttagattcatggctagatcataagggtaaaaaatgaagtaattgctcttgagccctgacaata
gi|6 : TATA-TG-GT--ATTTCCAATGACCC---GTGACATCTTT-GATGCACACC-TGTT------------------------AA-CCG--------G--A--CT--GTCG-CT-CTGG-GTATTT--GAATCACCCAA-CCTT-TGCC-TGC-TAGGCAAATAAC--TTGCTGATTATGCT--GCCA-GT--CCGCCCCCGGAGACTGGCCAA-GCTTCTTGAATAAAGAACCAGGAA-TATTAATATAA-TGG--TGCATGTTTGCTTTTTT--TT--TT-TT-GTTTTTTTGctcattgcatactttggtgaatgtaactccaggcacttgctttgacacccaaattaacaaaacgaacatacattcgtccatgagtagcttccatatgtattgatatcatggttgacgtctaggtaggacagggactcaactgccgtccttggagccctgaaata
gi|7 : gttaactgagTGGCACAAGTCA-TTC-GTTTATA-TG-GT-CATTTCCGATGACCC---GTGACAC--TT-GATC-ACACC-TGTTACC-GGGCATTCGG-C-A--TTGCAG-CTGT-GAATACG--AGTCT--GTCA-CTACTTG-G-ATTT--GAA-CAACCAA-CCTTCTGCA-TGC-TAGGC-A--AACGA-T-CTAACTG-ACT--GCCACGT-ACC-GCC----------GCTAA-GCTT-TTGAATGAAGACAAAGGAA-T-TT-ATA-TA-CGGACTGCATAT----Tttttttttgg
gi|8 : --AGTCT--GTCG-CGGCCGG-G-ATTC--GAA-C-ACCAA--CTTCCGCA-TGT-GGAGC-G--AACG-CT-CTAAC-G-ACTGAGCCAC
gi|9 : tgtgtaacacttaA--TAT-AAAC--TG-CTTTTTCAAAGCT-----TAT-TCCAGTAAAG--GAA---G-AAT-ATG----AAG--TGCATT-ATA-A--TA--TACA-TG-CAAA-T-AGCT-cgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACAGAGATATATACTGTCTGCTTATTTGATTTGAGTATCAAATGTGACACTTTGACT