lowQualScore : 111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 5555 11 111 1 111 11111111 33333 11 1111 11111111 8888888888888888 1111 2222222 111 333333333333 3333333333 555555555555555555555555 1111 11 111 2222 6666666666666 1111111 5555555555555555555555555 44444444444444444444444 22222222 5555555555555555555 2222222222222 1 88888888888888888888888 1 000000000000000000000000000000000000000 7777777777777777 11111 11 3333333333 111 99999999999 333333333333 44444 222222 2 1 88888888888888888888888888888 11 1 11
lowQualScore : 99 5 999 4 3 3 55 4 4 4 2222 1 55 000 9 55 3 2 222 2 55555555 66666 7 88 4 4 9999 9999 5 88888888 5 5 4 6 1 1 5 5 0000000000000000 1111 6666666 444 8 333333333333 3 1111111111 77 5 999999999999999999999999 5 6 2222 11 99 6 5 5 5 000 6 0 66 66 3333 666 3 7 77 5555555555555 8888 3 1111111 4 3 1111111111111111111111111 55 22222222222222222222222 4 4 66666666 1111111111111111111 8 777 1 999 7777777777777 3 0 0 0 3 11111111111111111111111 5 1 0 7 000000000000000000000000000000000000000 8888888888888888 2 3 99999 1 0 11 8888888888 666 22222222222 555555555555 00000 555555 0 0 77777777777777777777777777777 44 4 6 5 0 22
lowQualScore : .. . ... . . . .. . . . .... . .. ... . .. . . ... . ........ ..... . .. . . .... .... . ........ . . . . . . . . ................ .... ....... ... . ............ . .......... .. . ........................ . . .... .. .. . . . . ... . . .. .. .... ... . . .. ............. .... . ....... . . ......................... .. ....................... . . ........ ................... . ... . ... ............. . . . . . ....................... . . . . ....................................... ................ . . ..... . . .. .......... ... ........... ............ ..... ...... . . ............................. .. . . . . ..
lowQualScore : 22 7 666 0 6 6 55 0 0 0 9999 1 44 444 4 00 6 0 888 2 66666666 11111 3 00 4 4 4444 4444 0 11111111 0 0 0 0 4 1 0 0 6666666666666666 8888 0000000 000 0 555555555555 3 1111111111 99 7 111111111111111111111111 7 3 1111 99 22 7 7 7 7 555 0 4 11 99 0000 444 6 3 99 2222222222222 5555 6 8888888 0 6 5555555555555555555555555 00 66666666666666666666666 0 0 00000000 9999999999999999999 9 888 4 888 5555555555555 2 6 8 0 2 55555555555555555555555 0 0 7 7 777777777777777777777777777777777777777 2222222222222222 5 0 88888 4 8 00 0000000000 888 22222222222 444444444444 00000 222222 0 0 00000000000000000000000000000 77 7 0 0 7 00
consensus : TTTTAA--CA-AA-A-ATATGT-GGA-TTT-GA--AATG-AACA-AG-ATTGAAAG-CA-GCATATAGTGCG-A-TTACAAGG--A-AAATTCTCTC-A-CAGACATG-T-----GGACAAAGTGATGTCAGCC--CAAGC-TCT-ATAAA-TG-TAG----ATGCTTT----AATC-ATC--------T-ATACG-TGTATAAAATATGAAAGGGTCGT-AAACTC-GGAATGAAAAACTA-----TTGGAGTTATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA------T-----ACATCA---N------AACTC--CAGA-ACTAT-AT------GC--------G---TCT-TCTTTG----TATGNNCAGCTGCTTTTGTATTATC--GTC-GTTG-GTTGAAT-A-GGAAAT--CTCGTAATATAT--TCCCCGTC--TCAC---AAG---A-AT-CN-AATTA-----AA-----CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA-----------------G-------TA--TACAC----A------------------TCTT-ATTCC-ATGAC--------AATTA----A--------A---ATTT-CTACGAAA---ACAGAG--AAA-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGGT-------T--AGCGCGATTCGTTACGNAAGGAA--A---AACCC--ACCA-----TTATTTTTT-N--T---TTATTACTTCTATTTGTTNTGAAA-TATGT-TTGAAAATACATTTTTGTTAANAAACGTCAATACCAT--ATANTATA---CTTA-TNAATTCTACG--C--TTATA-TTATTTTTTTNAA--T-T--AACATGTTCATA--ATAA---C--TCCGCACAAA-CACACACACAACATAAAACTTTCAGNCTAAAACCTTATCANATAACCGACCGCCTCCTGGCGGCCAATA
Reference ( gi|1 ) : TTTTAA--CA-AA-A-ATATGT-GGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACATGCATATGGTGTG-G-TTACAAAG--A-AATTTCTCTC-G-CAGACATG-T-----AGACAAAGTGATGTCAGAT--GAAGC-TCT-TTAAA-TG-TAG----ATGCTTT----AATC-ATC--------T-ATACG-TGTATGAAATACGAAAGGGTCGT-AAACTC-GGAATGAAAAACTAACTTATTGGAGTTAATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA------T-----ACGTCA---A------AACTC--CAGA-ACTAT-AT------GT--------G---TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATT--GTC-GTTG-GTTGAAT-A-GGAAAT--TTCGCAATATAT--TCCCTGTC--TCAG---AAG---A-AT-CC-AATTATAAA-AA-----CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA-----------------G-------TA--TACAC----A------------------TCTT-ATTCC-ATGAC--------AAT------A--------A---ATTT-CTACGAAA---ACAGAA--AAA-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGGT-------TG-AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTATTTTTT-G--T---TTATTACTTCTATTTCTTTTGAAAATGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATA---ATTA-TAAATTCTACG--CAATTATAATTATTTTTCTGAA--T-T--AACATGTTC-----ATAA---C--TCCGCAC-AA-CACA------------AATTTTCGAACTAGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|3 : TTTTAA--CA-AA-T-ATATGA-GGA-TTT-GA--AATG-AACT-AG-ATTGAAAG----GCATA--GTGCG-A-TTACAAGG--A-AAATTCTCTC-A-CAGACATG-C-----AAACAAAGTGATGTCAGCC--CAAGC-TCT-ATAAA-TG-TAG----ATGTTTT----AATC-ATT--------T-ATACG-TGTATAACACATGAAAGGATCGT-AAACTC-TGAATGAAAAGCTA-----TTGGC-TTCATG----AC-------AAC---TGTTCAACAAATATACAC-AAAA-----T-----ACATCT---C------AACTC--CACA-GCTAT-AT------GA--------G---TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATC--GTC-GTTG-GTGGAAT-A-GGAAAT--CTAGTAATATAT--CCCCTGTC--TCAC---AAG---A-AT-CC-GTTCA-----AA-----TATG----AT-T-------T-AAAAAGA-TAACCAT-AAAAAAGTATATACACCTCAAAG-------TA--TATAC----ACC----------------TCTT-ATTCC-ATGAC--------AATTA----G--------A---ATTTCCTACAAAA---ACAGAA--AA
gi|2 : TTTTAA--CA-AT-A-ATA-ATAGGA-TTTTGA--AATG-AACT-AG-ATTGAAAG----GCATAAGTGGCG-A-TTACAGGA--A-AAATTCTCTC-A-CAGACATGGC-----AAACAAAGTGATGTCAG-C--CAAGCTTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA--TTGCTTCA---AATG----AC-------AAC---TGTTCAACAAATATACACAAAA------T-----ACATCT---C------AACTCCTCACA-GCTA--AT------AT--------GAAATCC-TTCTTT----AATGTTCAGCTGCTTTTATATTAGC--GTC-GTTG-GTGGAATAA-GGAAAT--CTAGTA--ATAT--CCCCTGTC--TCAT---CAC---AGAT-CC-CGTT-CAAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA-----------------G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCC-ATGAC--------AATTA----G--------A---ATTTCCTACAAAA---AAAGAA--AAA-------------tacaacta
gi|8 : TTTTAA--CATAA-ATATATGT-GGA-TTT-GA--AATG-TTCAGAG-ATTGAAAGGCA---ATATAGTGTA-G-TTGCAAGG--A-CAATTCTCTCAG-CA-AC----------------AGTGATGTCGGtacaact
gi|12 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcTTTTAAAGCA-TA-A-ATATGT-GGATTTT-GA--AATG--TCA-AG-ATTGAAAGGCA--AATATAGTGTG-ATTTGCAAGG--ACAAATTCCCTC------------------AGGCAAAGTGATGTCGGcccaggttaa
gi|30 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttctTTTTAA--CA-AA-A-ATATGT-GGA-TTT-cccaagt
gi|22 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTTTAA--CA-AATC-ATGTGT-GGA-TTT-GG--AATA-AACG-AGTAGTTAGAG----GCATA--GTGTGCA-TTAC-AGG--A-AA-TTCTCTC-GACAGAC-----------GATTATGCGTTTTC-GATCGGAAGC-TCT-T
gi|19 : A-AA-A-ATACGT-GGA-TTT-GAACAATGTAAGA-AG-ACTGAAA-----GCATA--GTGTG-A-T
gi|5 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTATGT-GGA-TTT-GA--AATG-AACA-AG-ATTGAAAA----GCATCTAGTTCG-A-TTACAAGG--A-AAATTCTCTC-A-CATACATA-T-----GGACAAAGTGATGTCAGCC--CAAGC-TCTAAAAAA-TG-T-G----ATGCTTTTGA-AATC-ATC--------T-ATACG-TGTATAAAGTATGAAAGGATCGT-AAAC---------------------ATTGGAGTTATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAATACATGT-----ACGTCA---A------AACTT--CAGA-ACTAC-AT------GTATATAAGCA---TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATT--GTC-GTTG-GATTAAT-A-GAAAAT--CTCGTAATATAT--TTCCCGTC--TCAC---AAG---A-AT-
gi|21 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttcTATGT-GGA-TTT-GA--AATG-AACA-AG-ATTGAAAGGCAT
gi|31 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttT-GGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACA-G---ATAGTGTG-A-TTACAAGG--A-AATagttattattaaataaaaa
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAAG----GCATATAGTGCG-A-TTACAAGG--A-AAATTCTTTC-A-CAGACATG-T-----GGACTAAGTGATGTCAGCC--CAAGC-TCT-ATAAA-TG-TAG-----------------------------------ACG-TGTATAGAATATGA----------GAACTC-GGAATGAAAAACTgtggacaaagt
gi|34 : ATAGTGCG-A-TTACAA-GTTA-AATTT-TCTC-A-CAGACATG-
gi|29 : GTGTG-G-TTACAAGG--A-AAATTCTCCC-A-AAGACATG-TCAACGGGACAAA-----GCCA------AAGCTTCT-ATAAATTGTTAG----AT
gi|28 : a--A-AATT---CTC-A-CAGACATA-T-----TAACAAAGTGATATCAGCC--CACGC-TCT-ATAAA-TG-TAGATCTATGCTTT----AATG-ATC--------T-GTACG-TGTATAAA
gi|32 : TCTTTC-A-CAGACCTG-T-----GGACCAAGTGGGGTCAGCC--CAAGC-TCT-
gi|23 : aaacCTCTC-A-CAGACATG-T-----GGACAAAGTGATGATTGAC--CAAGT-TCG-ATAAA-TG-TAA----ATGCTTT----AACC-ATC--------T-ATACG-TGTATGAAATATGAAA-GGTCGT-AAACTC-GGAATGAAaa
gi|25 : CATG-T-----GGACAAAGTGGGGTCAGCC--CAAGC-TGT-AAAGA-TA-TAG----ATGCTTTTATTAATC-ATC--------T-AGATA-TGTATAAAATCTGAAAGGGTCAT-AAACTT-GGAATGAA
gi|4 : ATGTCATCC--CAAGC-TCT-ATAAA-TG-TAG----ATACATT----AATC-ATCCACAAATTT-ATACG-TGTATAAAATATGACAGGATCAT-AATCTC-GGAATGAAAAACTCA-------AAGTTTTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAA------TTAAATACATCA---A------A------CAG-----------------C--------G---TCT-TC---------------------TTTTATATTATT--GTC-GTTG-GTTGAAA-A-GGAATT--CTCGTAATATAT--TCCCCATC--TCAC---AAGATTA-AT-CT-AGTT------AA-----CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATG-------------G-------TATTTACAC----T------------------TGTT-ATTCC-ATTACAATATTAGAAT------A--------A---ATTT-CTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGT-------TT-AACGCGATTTGTTACGAAAGGA
gi|7 : gacctgtaaatAGGGTCGT-AAATTC-GGAATGAAAAACCA-----TTGGAGCAATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACA------T-----ACATCATACATTGTGTAAGTC--CAGA-ACTGT-AA------AC--------G---TCT-TCTTAG----TATGGACAGCTGCT
gi|17 : AA------T-----ACATTA---C------AACTC--CAGA-ACTAT-ATATTTAAGC--------G---TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTT--CTC-GTTT-GTTGAAA-A-GGAAAT--ATCGTATTATAT--TCCCCGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|11 : ------AACTC--CAGAGACTACCAT------GTATAAGC--G---TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTTTCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTC--TCAAC--AAA---A-ATACT-AAGT-TGAG-AG-----CATG----AT-T-------attagccaagtcctttacactttaatatgaatt
gi|10 : TTG-GTTGAAT-A-GGAAAT--CTTTTAATATAT--TCCATGCT--TCAC---AAG---A-GC-CG-AATTA-----AA-----CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA-----------------AGTATACATA--TACAC----A------------------TCTT-ATTTC-ATGAC--------AATTAG---A--------ATACATTT-CTTCAAAA---ACAGAG--AAAATATATAACTATCGTGTTCAAGAAAATCTTTGTTTTgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|7 : taT--TTCGTAATATATATTCCCTGTC--TCAT---AAA---A-AT-CT-ACTT-TAAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT-AAAA------------------G-------TA--AACAC----A------------------TCTT-ATTCC-ATGAG--------AAT------
gi|9 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--TCCCTGTCCGTCTGTGTGAG---A-ATGCCGAATTA-----AA-----CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA-----------------G-------TA--TAtaga
gi|20 : atc---AAG---A-AT-CT-AATTA-----AA-----CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA-----------------GTACGT--TA--TACAC----A------------------TCTT-ATTCC-TTAACAATTAG--AAT------A--------G---ATGT-CTACGTAA---ACAGAG--AAA-------------ATATtttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat
gi|6 : cAG---A-AT-CA-AATTA---A-GA------ATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA-----------------G-------TA--TAATA----A------------------TCTT-ATTTC-ATGAT--------AATTAGAATA--------A---ATCT-CTACGAAA---ACT------AA-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT-----------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATTT-T--T---TTATTACCTCTATTTGTTGTGAAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATC----ATTC--------TTA-TAAATTCTACG-----------TTATTCTTTTTAA--TCT--AACATGTTC-----Aaactatcgtgttaa
gi|24 : gttaaatgtataccAG---A-AT-CA-CATTA-----AA-----CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA-----------------G-------TA--TACAC----A------------------TCTT-ATTTCAATTAG--------AAT------A--------A---ATCT-CTATGAAA---AC
gi|26 : gtgattaaatgtataccT-T-------TTGAAAAGA-TAACCAT-AAAAAA----------------G-------TA--TATACCC--A------------------TTTT-ATTCC-ATGAC--------AATTCGAATA--------A---ATTT-CTACGAAA---ACAGAG--AAA-------------ATATTAt
gi|9 : CCAT-ATA---------------------------TA--TACATGTATA------------------TCTT-GTTCC-ATGAC--------AAT------ATTAGAATAA---ATCT-CTACGAAA---TTAACT--ATC-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Tctgtcgtgtt
gi|15 : atctccctgtccgtctgtgtgagaatgccgaattaaacatggttttgaaaagataaccataaaaaagtatatttaaaatattatacatgtatatcttgtt-------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGGTTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA---------------------------ACTTCTGTTTGTTT--------------GAAAATACATTTTT---------CATCAATACCAT--ATGATATA---CTT
gi|14 : tAA--A---AACCCTTGCCA-----TTATTTTTTTG--CATATTATTACTTCTATTT-----------GT-T-TTGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATA---CTTA-TCAATTTTACG-----TTTTTGTTATTTCT-TAAA--T-TTCAACATGTTCATATGATAA---C--TCCGCACAAA-CAC
gi|13 : -----TTATTTATT-ACAT---TTATTACTTCTATTTGTTATGAAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGA---CTTA-T-TATTCTACGTTCA--TATA--TATTTTTTTAAAATT-T--AAAATGTTCATAATATAA---C--TCCGCACAAA-CACgcga
gi|16 : AAAACCAT--ATAATATACAAATTACTTAATTCCATG--TT-TTATA-TTGTTTTATT--A--T-T--AACATGTTC-----ATGA---TAATCCGCAC-AA-CACACACACAACATAAAACTTTCAGTTTAAAACTTT-TCATATAACAGACCGCCTCCTGACAGCttgactt
gi|27 : ATTATTTTTGTT----T-T--AACATGTTC-----ATAAGAAC--TACTCAC-AAACACA------------------C-AACTA----CTTA--AAACAACCGACCGCCTCCTGGCAGC
gi|33 : gtcgtttttATCGCATAACCGACCGCCTCCTGGCGGCCAATA
Alignments
lowQualScore : 3333 1111 11111111 11111 1111 2222222 111 11111 111111 2222222222 4444444444444444 11111 11111 2222 11111111 1111111 222222222222 55555555555555555555555 33333333333 1111 222222222222222222 555555555555 4444444444444444444444444444444444444 4444444444 111111 111 222222222 11111 22 2222222222 444444444444444444
lowQualScore : 77 5 777 4 3 3 55 3 3 3 3 9999 55 2 3 3 3 2 0 2 77777 3 3 3 3 4 4 8888 7777 4 66666666 4 4 0 4 4 66666 3 2222 6 1111111 111 6 5 44444 666666 3333333333 66 5 4444444444444444 66 5 00000 55 6 44444 5 5 5 66 66 4 3 3 555 77 1 3 0000 33333333 7777 3 0000000 3 6 333333333333 44 99999999999999999999999 3 3 55 33333333333 5555 4 8 4 0 3 777777777777777777 1 8 0 0 99 444444444444 22 1 3333333333333333333333333333333333333 0 2222222222 8 0 555 111111 111 8 11 222222222 6 44444 6 99 22 0 0 7777777777 222222222222222222 55
lowQualScore : .. . ... . . . .. . . . . .... .. . . . . . . . ..... . . . . . . .... .... . ........ . . . . . ..... . .... . ....... ... . . ..... ...... .......... .. . ................ .. . ..... .. . ..... . . . .. .. . . . ... .. . . .... ........ .... . ....... . . ............ .. ....................... . . .. ........... .... . . . . . .................. . . . . .. ............ .. . ..................................... . .......... . . ... ...... ... . .. ......... . ..... . .. .. . . .......... .................. ..
lowQualScore : 99 0 222 0 3 3 00 6 6 6 6 0000 00 1 3 3 1 9 7 9 77777 1 3 3 6 0 0 5555 2222 4 11111111 4 4 1 4 4 77777 2 3333 7 7777777 777 7 7 33333 444444 9999999999 99 0 0000000000000000 99 0 88888 55 3 33333 0 0 0 11 11 4 6 3 888 99 0 6 0000 22222222 7777 3 8888888 6 7 000000000000 66 77777777777777777777777 6 6 00 55555555555 5555 0 0 0 1 7 999999999999999999 4 0 8 8 00 000000000000 22 0 8888888888888888888888888888888888888 8 2222222222 0 6 444 222222 777 0 88 777777777 7 88888 7 22 00 8 8 2222222222 999999999999999999 22
consensus : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAA-G-C--GC-ATATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCC-ATGACA--AT--T---A----GAAT----T-T-CTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-TG-AAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAAACACGCA-AC-AC-TAAAACTTTCGG-CTAGG-CCTTATCGTATAACCGACCGCCTCCTGGCGGCCGGTA
Reference ( family-816 ) : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAA-G-CA-GC-ATATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNNCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCC-ATGACA--AT--T---A----AAAT----T-T-CTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCGCGATTCGTTACGNAAGGAA--A---AACCC--ACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTTNTG-AAA-TATGT-TTGAAAATACATTTTTGTTAANAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGC--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAAACACACACACAACATAAAACTTTCAGNCTAAAACCTTATCANATAACCGACCGCCTCCTGGCGGCCAATA
gi|1 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAA-GACATGC-ATATGGTG-TGG-TTACAAAGA-AATTTCTCTC-GCAGACATG-T-----AGACAA-AGTGATGTCAGATGAAGC-T-CT-TTAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATGAAATACGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTAACTTATTGGAGTT--AATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACG------TCA---------AAACTCC--AGA-ACTA-----TAT--------GTG--TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATTGTC-----GTTG-GTTGAAT-A-GGAAATT--TCGCAATATAT--TCCCTGTCT-C-A-GAAG---AAT--CCAA-TTATAAAAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCC-ATGACA--AT-----------AAAT----T-T-CTACGAAA-ACAGAAAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGG-TTG--------AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTATTTTTTG---T-TTATTACTTCTATTTCTTTTGAAAA-TGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATAA---TTA-TAAATTCTACGCAATT-ATAAT-TATTTTTCTGAA--T-T--AACATGTTC-----ATAACTCCGCAC-AACAC------------AAATTTTCGAACTAGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|10 : TTG-GTTGAAT-A-GGAAATC--TTTTAATATAT--TCCATGCTT-C-A-CAAG---AGC--CGAA-TT----AAA--------CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA----AGTATACATA--TACAC----A------------------TCTT-ATTTC-ATGACA--AT--T---A----GAATACATT-T-CTTCAAAA-ACAGAGAA----AATATATAACTATCGTGTTCAAGAAAATCTTTGTTTT
gi|11 : taAACTCC--AGAGACTACCATGTATAA------GCG--TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTT--TCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTCT-CAA-CAAA---AATA-CTAAGTTGA--GAG--------CATG----AT-T-------
gi|12 : TTTTAAAGCA-TA-A-ATA-TGTGGATTTT-GA--AATG--TCA-AG-ATTGAAAGG-CA-A--ATATAGTG-TGATTTGCAAGGACAAATTCCCTC-A----------------GGCAA-AGTGATGTCGGCCCAAGgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|13 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttct-----TTATTTATTACA-T-TTATTACTTCTATTTGTTATG-AAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGAC---TTA-TT-ATTCTACGT--TC-AT-ATATATTTTTTTAAAATT-T--AAAATGTTCATAATATAACTCCGCACAAACACt
gi|14 : AA--A---AACCCTTGCCA-----TTATTTTTTTGCATATTATTACTTCTATTTGTT--------------TTGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATAC---TTA-TCAATTTTACGT--TT-TT-GT-TA-TTTCTTAAA--T-TTCAACATGTTCATATGATAACTCCGCACAAACACGCttgactt
gi|15 : -------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGG-TTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA-------------------------ACTTCTGTT--------------TGT-TTGAAAATACATTTTT---------CATCAATACCAT--ATGATATAC---TTga
gi|16 : tAAAACCAT--ATAATATACAAATTACTTAATTCCATGT--TTTAT-AT-TGTTTTATT--A--T-T--AACATGTTCATG--ATAA-TCCGCACAA-CACACACACAACATAAAACTTTCAGTTTAAAACTTT-TCATATAACAGACCGCCTCCTGACAGC
gi|17 : AA-T-----ACA------TTA---------CAACTCC--AGA-ACTA-----TATATTTAA--GCG--TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTTCTC-----GTTT-GTTGAAA-A-GGAAATA--TCGTATTATAT--TCCCCG
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAA-G----GC-ATATAGTG-CGA-TTACAAGGA-AAATTCTTTC-ACAGACATG-T-----GGACTA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG-----------------------------------ACGT-GTATAGAATATGA---------GAA-CTC-GGAATGAAAAACTattagccaagtcctttacactttaatatgaatt
gi|19 : A-AA-A-ATA-CGTGGA-TTT-GAACAATGTAAGA-AG-ACTGAAA-G-C-------ATAGTG-TGA-T
gi|2 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTTTTAA--CA-AT-A-ATAATA-GGA-TTTTGA--AATG-AACT-AG-ATTGAAA-G----GC-ATA-AGTGGCGA-TTACAGGAA-AAATTCTCTC-ACAGACATGGC-----AAACAA-AGTGATGTCAGCC-AAGC-TTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA-----TTGC--TTCAAATG----AC-------AAC---TGTTCAACAAATATACAC-AAAAT-----ACA------TCT---------CAACTCCTCACA-GCTAA----TAT--------GAAATCCT-TCTTTA-----ATGTTCAGCTGCTTTTATATTAGCGTC-----GTTG-GTGGAATAA-GGAAATC--TAGTA--ATAT--CCCCTGTCT-C-ATCACA---GAT--CCCG-TTC---AAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA----G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCC-ATGACA--AT--T---A----GAAT----T-TCCTACAAAA-AAAGAAAA----A-------------
gi|20 : -CAAG---AAT--CTAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA----GTACGT--TA--TACAC----A------------------TCTT-ATTCC-TTAACA--AT--T---A----GAATAGA-TGT-CTACGTAA-ACAGAGAA----A-------------ATATtacaact
gi|21 : TA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAA-G----GC-ATAaactatcgtgttaa
gi|22 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttTTTAA--CA-AATC-ATG-TGTGGA-TTT-GG--AATA-AACG-AGTAGTTAGA-G----GC-ATAGTGTG-C-A-TTACA--GG-AAATTCTCTCGACAGACgttattattaaataaaaa
gi|23 : CTCTC-ACAGACATG-T-----GGACAA-AGTGATGATTGACCAAGT-T-CG-ATAAA-TG-TAA----ATGCTTT----AACCA-TC--------T-ATACGT-GTATGAAATATGAAA-GGTCGTAAA-CTC-GGAATGAAgattatgcgttttcgatcggaagctctt
gi|24 : -A-CCAG---AAT--CACA-TT----AAA--------CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA----G-------TA--TACAC----A------------------TCTT-ATTTCAATTAGA--AT-----------AAAT----C-T-CTATGAAA-AC
gi|25 : gtgattaaatgtatCATG-T-----GGACAA-AGTGGGGTCAGCCCAAGC-T-GT-AAAGA-TA-TAG----ATGCTTTTATTAATCA-TC--------T-AGATAT-GTATAAAATCTGAAAGGGTCATAAA-CTT-GGAATGAAt
gi|26 : T-T-------TTGAAAAGA-TAACCAT-AAAAAA---G-------TA--TATACCC--A------------------TTTT-ATTCC-ATGACA--AT--TCGAAT---AAAT----T-T-CTACGAAA-ACAGAGAA----A-------------ATATTA
gi|27 : CGT--TT-TT-AT-TATTTTTGTT----T-T--AACATGTTCATA--AGAACTACTCACAAACACACA-ACTACTTAAAAC------------------------AACCGACCGCCTCCTGGCAGCctgtcgtgtt
gi|28 : gt-AAATTCTC---ACAGACATA-T-----TAACAA-AGTGATATCAGCCCACGC-T-CT-ATAAA-TG-TAGATCTATGCTTT----AATGA-TC--------T-GTACGT-GTATAAA
gi|29 : AGTG-TGG-TTACAAGGA-AAATTCTCCC-AAAGACATG-TCAACGGGACAA----------AGCCAAAGCTT-CT-ATAAATTGTTAG----AT
gi|3 : TTTTAA--CA-AA-T-ATA-TGAGGA-TTT-GA--AATG-AACT-AG-ATTGAAA-G----GC-ATA--GTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-C-----AAACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGTTTT----AATCA-TT--------T-ATACGT-GTATAACACATGAAAGGATCGTAAA-CTC-TGAATGAAAAGCTA-----TTGGCTTC--A-TG----AC-------AAC---TGTTCAACAAATATACACAAAA-T-----ACA------TCT---------CAACTCC--ACA-GCTA-----TAT--------GAG--TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATCGTC-----GTTG-GTGGAAT-A-GGAAATC--TAGTAATATAT--CCCCTGTCT-C-A-CAAG---AAT--CCGT-TC----AAA--------TATG----A--T-------TTAAAAAGA-TAACCATAAAAAA----G-------TA--TATAC----ACCTCAAAGTATATACACCTCTT-ATTCC-ATGACA--AT--T---A----GAAT----T-TCCTACAAAA-ACAGAAAA----
gi|30 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-tacaacta
gi|31 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTGGA-TTT-GA--AATG-AACA-AG-ATTGAAA-GACA-G----ATAGTG-TGA-TTACAAGGA-A----------------ATG-T-----GGACAA-AGT
gi|32 : -AAACTCTTTC-ACAGACCTG-T-----GGACCA-AGTGGGGTCAGCCCAAGC-T-CT-A
gi|33 : ATCGCATAACCGACCGCCTCCTGGCGGCCAATAa
gi|34 : ATAGTG-CGA-TTACAAGTT-AAATTTTCTC-ACAGACATG-atga
gi|4 : ATGTCATCCCAAGC-T-CT-ATAAA-TG-TAG----ATACATT----AATCA-TCCACAAATTT-ATACGT-GTATAAAATATGACAGGATCATAAT-CTC-GGAATGAAAAACT-------CAAAGTT--TTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAA-TTAAATACA------TCA---------AA----C--AG-----------------------CG--TCT-TCTTT---------------------TATATTATTGTC-----GTTG-GTTGAAA-A-GGAATTC--TCGTAATATAT--TCCCCATCT-C-A-CAAGATTAAT--CTAG-TT-----AA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATGG-------TATTTACAC----T------------------TGTT-ATTCC-ATTACAATAT--T---AGAATAAAT----T-T-CTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGTTT---------AACGCGATTTGTTACGAAAGGA
gi|5 : gacctgtaaatTA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAA----A-GC-ATCTAGTT-CGA-TTACAAGGA-AAATTCTCTC-ACATACATA-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CTAAAAAA-TG-T-G----ATGCTTTTGA-AATCA-TC--------T-ATACGT-GTATAAAGTATGAAAGGATCGTAAA-C----------------A-----TTGGAGTT--ATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAA-T-----ACATGTACGTCA---------AAACTTC--AGA-ACTA-----CATGTATATAAGCA--TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATTGTC-----GTTG-GATTAAT-A-GAAAATC--TCGTAATATAT--TTCCCGTCT-C-A-CAAG---AAT--
gi|6 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttc-A-CCAG---AAT--CAAA-TT----AAG--------AATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA----G-------TA--TAATA----A------------------TCTT-ATTTC-ATGATA--AT--T---AGAATAAAT----C-T-CTACGAAA-ACT----A----A-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT------------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATTTT---T-TTATTACCTCTATTTGTTGTG-AAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATCAT---T------C---TTA-TAAATTCTACG----------T-TATTCTTTTTAA--TCT--AACATGTTCA
gi|7 : gttaaatgtatAGGGTCGTAAA-TTC-GGAATGAAAAACCA-----TTGGAGCA--ATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACA-T-----ACA------TCATACATTGTGTAAGTCC--AGA-ACTG-----TAA--------ACG--TCT-TCTTAG----TATGGACAGCTGCT
gi|7 : TT--TCGTAATATATATTCCCTGTCT-C-A-TAAA---AAT--CTAC-TTT---AAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT--AAAA----G-------TA--AACAC----A------------------TCTT-ATTCC-ATGAGA--AT--T---A----GAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|8 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTAA--CATAA-ATATA-TGTGGA-TTT-GA--AATG-TTCAGAG-ATTGAAA-G----GCAATATAGTG-TAG-TTGCAAGGA-CAATTCTCTC-A-----------------GCAACAGTGATGTCGGCCCAGGT-T-
gi|9 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcCCGTCTGT-G-TGAG---AATGCCGAA-TT----AAA--------CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA----G-------TA--TAaa
gi|9 : atctccctgtCCAT-ATA--------------TA--TACATGTATA------------------TCTT-GTTCC-ATGACA--ATATT---AGAATAAAT----C-T-CTACGAAA-TTAACTAT----C-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Ttttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat
Alignments
lowQualScore : 3333 1111 11111111 11111 1111 2222222 111 11111 111111 2222222222 4444444444444444 11111 11111 2222 11111111 1111111 222222222222 55555555555555555555555 1111 4444 222222222222222222 555555555555 222222 11 33333333333333333333 555555555555555 111111 111 111111111 11111 22 111 777777777777777777777777777777
lowQualScore : 77 5 777 4 3 3 55 3 3 3 8888 88 2 3 3 3 2 0 2 77777 3 3 3 3 4 4 8888 7777 4 66666666 4 4 0 4 4 66666 3 2222 6 1111111 111 6 5 44444 666666 3333333333 66 5 4444444444444444 66 5 00000 66 6 44444 5 5 5 66 66 4 3 3 555 77 1 3 0000 33333333 7777 3 0000000 3 6 333333333333 44 99999999999999999999999 3 55 55 5555 1111 4 8 4 0 3 777777777777777777 1 8 0 0 99 444444444444 0 1 666666 2 22 55555555555555555555 5 555555555555555 0 444 111111 111 8 11 555555555 6 44444 6 99 22 0 444 666666666666666666666666666666 3 55
lowQualScore : .. . ... . . . .. . . . .... .. . . . . . . . ..... . . . . . . .... .... . ........ . . . . . ..... . .... . ....... ... . . ..... ...... .......... .. . ................ .. . ..... .. . ..... . . . .. .. . . . ... .. . . .... ........ .... . ....... . . ............ .. ....................... . .. .. .... .... . . . . . .................. . . . . .. ............ . . ...... . .. .................... . ............... . ... ...... ... . .. ......... . ..... . .. .. . ... .............................. . ..
lowQualScore : 99 0 222 0 3 3 00 6 6 6 7777 66 1 3 3 1 9 7 9 77777 1 3 3 6 0 0 5555 2222 4 11111111 4 4 1 4 4 77777 2 3333 7 7777777 777 7 7 33333 444444 9999999999 99 0 0000000000000000 99 0 88888 11 3 33333 0 0 0 11 11 4 6 3 888 99 0 6 0000 22222222 7777 3 8888888 6 7 000000000000 66 77777777777777777777777 6 00 00 5555 0000 0 0 0 1 7 999999999999999999 4 0 8 8 00 000000000000 2 0 000000 5 22 00000000000000000000 0 444444444444444 6 888 222222 777 0 88 333333333 7 88888 7 22 00 8 000 555555555555555555555555555555 5 00
consensus : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--ATATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAG----AATA-ATT-T-CTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGAC-A--TAAAACTTTCG-G-CTAGG--CTTATCGTATAACCGACCGCCTCCTGGCGGCCGGTA
Reference ( family-816 ) : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG---CGC--ATATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAG----AAT----T-T-CTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCAAC-AC-TAAAACTTTCG-G-CTAGG-CCTTATCGTATAACCGACCGCCTCCTGGCGGCCGGTA
gi|1 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACATGC--ATATGGTG-TGG-TTACAAAGA-AATTTCTCTC-GCAGACATG-T-----AGACAA-AGTGATGTCAGATGAAGC-T-CT-TTAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATGAAATACGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTAACTTATTGGAGTT--AATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACG------TCA---------AAACTCC--AGA-ACTA-----TAT--------GTG--TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATTGTC-----GTTG-GTTGAAT-A-GGAAATT--TCGCAATATAT--TCCCTGTCT-C-A-GAAG---AAT--CCAA-TTATAAAAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT----A----AAT----T-T-CTACGAAA-ACAGAAAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGG-TTG--------AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTATTTTTTG---T-TTATTACTTCTATTTCTT-TTGAAAA-TGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATAA---TTA-TAAATTCTACGCAATT-ATAAT-TATTTTTCTGAA--T-T--AACATGTTC-----ATAACTCCGCAC-A---ACAC-----------AAATTTTCGAA-CTAGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|10 : TTG-GTTGAAT-A-GGAAATC--TTTTAATATAT--TCCATGCTT-C-A-CAAG---AGC--CGAA-TT----AAA--------CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA----AGTATACATA--TACAC----A------------------TCTT-ATTTCATGACA--AT--TAG----AATACATT-T-CTTCAAAA-ACAGAGAA----AATATATAACTATCGTGTTCAAGAAAATCTTTGTTTT
gi|11 : taAACTCC--AGAGACTACCATGTATAA------GCG--TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTT--TCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTCT-CAA-CAAA---AATA-CTAAGTTGA--GAG--------CATG----AT-T-------
gi|12 : TTTTAAAGCA-TA-A-ATA-TGTGGATTTT-GA--AATG--TCA-AG-ATTGAAAG----GCAAATATAGTG-TGATTTGCAAGGACAAATTCCCTC-A----------------GGCAA-AGTGATGTCGGCCCAAGgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|13 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttct-----TTATTTATTACA-T-TTATTACTTCTATTTGTTAT--GAAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGAC---TTA-TT-ATTCTACGT--TC-AT-ATATATTTTTTTAAAATT-T--AAAATGTTCATAATATAACTCCGCACAA---ACACt
gi|14 : AA--A---AACCCTTGCCA-----TTATTTTTTTGCATATTATTACTTCTATTTGTT-T--------------TGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATAC---TTA-TCAATTTTACGT--TT-TT-GT-TA-TTTCTTAAA--T-TTCAACATGTTCATATGATAACTCCGCACAA---ACACGCGAttgactt
gi|15 : -------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGG-TTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA-------------------------ACTTCTGTTT---------------GT-TTGAAAATACATTTTT---------CATCAATACCAT--ATGATATAC---TT
gi|16 : tAAAACCAT--ATAATATACAAATTACTTAATTCCATGT--TTTAT-AT-TGTTTTATT--A--T-T--AACATGTTCATG--ATAA-TCCGCACAACACACACACAAC-A--TAAAACTTTCA-GTTTAAA-ACTTTTCATATAACAGACCGCCTCCTGACAGC
gi|17 : AA-T-----ACA------TTA---------CAACTCC--AGA-ACTA-----TATATTTAA--GCG--TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTTCTC-----GTTT-GTTGAAA-A-GGAAATA--TCGTATTATAT--TCCCCG
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--ATATAGTG-CGA-TTACAAGGA-AAATTCTTTC-ACAGACATG-T-----GGACTA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG-----------------------------------ACGT-GTATAGAATATGA---------GAA-CTC-GGAATGAAAAACTattagccaagtcctttacactttaatatgaatt
gi|19 : A-AA-A-ATA-CGTGGA-TTT-GAACAATGTAAGA-AG-ACTGAAAG---C------ATAGTG-TGA-T
gi|2 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTTTTAA--CA-AT-A-ATAATA-GGA-TTTTGA--AATG-AACT-AG-ATTGAAAG----GC--ATA-AGTGGCGA-TTACAGGAA-AAATTCTCTC-ACAGACATGGC-----AAACAA-AGTGATGTCAGCC-AAGC-TTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA-----TTGC--TTCAAATG----AC-------AAC---TGTTCAACAAATATACAC-AAAAT-----ACA------TCT---------CAACTCCTCACA-GCTAA----TAT--------GAAATCCT-TCTTTA-----ATGTTCAGCTGCTTTTATATTAGCGTC-----GTTG-GTGGAATAA-GGAAATC--TAGTA--ATAT--CCCCTGTCT-C-ATCACA---GAT--CCCG-TTC---AAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA----G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCCATGACA--AT--TAG----AAT----T-TCCTACAAAA-AAAGAAAA----A-------------
gi|20 : -CAAG---AAT--CTAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA----GTACGT--TA--TACAC----A------------------TCTT-ATTCCTTAACA--AT--TAG----AATAGA-TGT-CTACGTAA-ACAGAGAA----A-------------ATATtacaact
gi|21 : TA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--ATAaactatcgtgttaa
gi|22 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttTTTAA--CA-AATC-ATG-TGTGGA-TTT-GG--AATA-AACG-AGTAGTTAGAG----GC--ATAGTGTG-C-A-TTACA--GG-AAATTCTCTCGACAGACgttattattaaataaaaa
gi|23 : CTCTC-ACAGACATG-T-----GGACAA-AGTGATGATTGACCAAGT-T-CG-ATAAA-TG-TAA----ATGCTTT----AACCA-TC--------T-ATACGT-GTATGAAATATGAAA-GGTCGTAAA-CTC-GGAATGAAgattatgcgttttcgatcggaagctctt
gi|24 : -A-CCAG---AAT--CACA-TT----AAA--------CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA----G-------TA--TACAC----A------------------TCTT-ATTT-----CA--AT--TAGAATAAAT----C-T-CTATGAAA-AC
gi|25 : gtgattaaatgtatCATG-T-----GGACAA-AGTGGGGTCAGCCCAAGC-T-GT-AAAGA-TA-TAG----ATGCTTTTATTAATCA-TC--------T-AGATAT-GTATAAAATCTGAAAGGGTCATAAA-CTT-GGAATGAAt
gi|26 : T-T-------TTGAAAAGA-TAACCAT-AAAAAA---G-------TA--TATACCC--A------------------TTTT-ATTCCATGACA--AT--TCG----AATAAATT-T-CTACGAAA-ACAGAGAA----A-------------ATATTA
gi|27 : CGT--TT-TT-AT-TATTTTTGTT----T-T--AACATGTTCATA--AGAACTACTCACAA---ACACACAACTACTTAAAAC-------------------------AACCGACCGCCTCCTGGCAGCctgtcgtgtt
gi|28 : gt-AAATTCTC---ACAGACATA-T-----TAACAA-AGTGATATCAGCCCACGC-T-CT-ATAAA-TG-TAGATCTATGCTTT----AATGA-TC--------T-GTACGT-GTATAAA
gi|29 : AGTG-TGG-TTACAAGGA-AAATTCTCCC-AAAGACATG-TCAACGGGACAA----------AGCCAAAGCTT-CT-ATAAATTGTTAG----AT
gi|3 : TTTTAA--CA-AA-T-ATA-TGAGGA-TTT-GA--AATG-AACT-AG-ATTGAAAG----GC--ATA--GTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-C-----AAACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGTTTT----AATCA-TT--------T-ATACGT-GTATAACACATGAAAGGATCGTAAA-CTC-TGAATGAAAAGCTA-----TTGGCTTC--A-TG----AC-------AAC---TGTTCAACAAATATACACAAAA-T-----ACA------TCT---------CAACTCC--ACA-GCTA-----TAT--------GAG--TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATCGTC-----GTTG-GTGGAAT-A-GGAAATC--TAGTAATATAT--CCCCTGTCT-C-A-CAAG---AAT--CCGT-TC----AAA--------TATG----A--T-------TTAAAAAGA-TAACCATAAAAAA----G-------TA--TATAC----ACCTCAAAGTATATACACCTCTT-ATTCCATGACA--AT--TAG----AAT----T-TCCTACAAAA-ACAGAAAA----
gi|30 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-tacaacta
gi|31 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----AC--AGATAGTG-TGA-TTACAAGGA-A----------------ATG-T-----GGACAA-AGT
gi|32 : -AAACTCTTTC-ACAGACCTG-T-----GGACCA-AGTGGGGTCAGCCCAAGC-T-CT-A
gi|33 : ATCGCATAACCGACCGCCTCCTGGCGGCCAATAa
gi|34 : ATAGTG-CGA-TTACAAGTT-AAATTTTCTC-ACAGACATG-atga
gi|4 : ATGTCATCCCAAGC-T-CT-ATAAA-TG-TAG----ATACATT----AATCA-TCCACAAATTT-ATACGT-GTATAAAATATGACAGGATCATAAT-CTC-GGAATGAAAAACT-------CAAAGTT--TTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAA-TTAAATACA------TCA---------AA----C--AG-----------------------CG--TCT-TCTTT---------------------TATATTATTGTC-----GTTG-GTTGAAA-A-GGAATTC--TCGTAATATAT--TCCCCATCT-C-A-CAAGATTAAT--CTAG-TT-----AA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATGG-------TATTTACAC----T------------------TGTT-ATTCCATTACAATAT--TAGAATAAAT----T-T-CTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGTTT---------AACGCGATTTGTTACGAAAGGA
gi|5 : gacctgtaaatTA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAA----GC--ATCTAGTT-CGA-TTACAAGGA-AAATTCTCTC-ACATACATA-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CTAAAAAA-TG-T-G----ATGCTTTTGA-AATCA-TC--------T-ATACGT-GTATAAAGTATGAAAGGATCGTAAA-C----------------A-----TTGGAGTT--ATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAA-T-----ACATGTACGTCA---------AAACTTC--AGA-ACTA-----CATGTATATAAGCA--TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATTGTC-----GTTG-GATTAAT-A-GAAAATC--TCGTAATATAT--TTCCCGTCT-C-A-CAAG---AAT--
gi|6 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttc-A-CCAG---AAT--CAAA-TT----AAG--------AATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA----G-------TA--TAATA----A------------------TCTT-ATTTCATGATA--AT--TAG----AATAAATC-T-CTACGAAA-ACT----A----A-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT------------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATTTT---T-TTATTACCTCTATTTGTTGT--GAAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATCAT---T------C---TTA-TAAATTCTACG----------T-TATTCTTTTTAA--TCT--AACATGTTCA
gi|7 : gttaaatgtatAGGGTCGTAAA-TTC-GGAATGAAAAACCA-----TTGGAGCA--ATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACA-T-----ACA------TCATACATTGTGTAAGTCC--AGA-ACTG-----TAA--------ACG--TCT-TCTTAG----TATGGACAGCTGCT
gi|7 : TT--TCGTAATATATATTCCCTGTCT-C-A-TAAA---AAT--CTAC-TTT---AAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT-AAAA-----G-------TA--AACAC----A------------------TCTT-ATTCCATGAGA--AT--TAG----Agnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|8 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTAA--CATAA-ATATA-TGTGGA-TTT-GA--AATG-TTCAGAG-ATTGAAAG----GCA-ATATAGTG-TAG-TTGCAAGGA-CAATTCTCTC-A-----------------GCAACAGTGATGTCGGCCCAGGT-T-
gi|9 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcCCGTCTGT-G-TGAG---AATGCCGAA-TT----AAA--------CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA----G-------TA--TAaa
gi|9 : atctccctgtCCAT-ATA--------------TA--TACATGTATA------------------TCTT-GTTCCATGACA--ATATTAG----AATAAATC-T-CTACGAAA-TTAACTAT----C-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Ttttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat
Alignments
lowQualScore : 1111 11111111 11111 1111 2222222 111 11111 111111 2222222222 4444444444444444 11111 11111 2222 11111111 1111111 222222222222 55555555555555555555555 22222 222222222222222222 555555555555 222222 11 33333333333333333333 555555555555555 111111 111 111111111 11111 22 111 7777777777777777777777777777
lowQualScore : 77 5 777 4 3 3 55 3 3 3 7777 55 3 2 3 3 3 2 0 2 77777 3 3 3 3 4 4 8888 7777 4 66666666 4 4 0 4 4 66666 3 2222 6 1111111 111 6 5 44444 666666 3333333333 66 5 4444444444444444 66 5 00000 66 6 44444 5 5 5 66 66 4 3 3 555 77 1 3 0000 33333333 7777 3 0000000 3 6 333333333333 44 99999999999999999999999 3 55 55 44444 4 0 3 777777777777777777 1 8 0 0 99 444444444444 0 1 666666 2 22 55555555555555555555 5 555555555555555 0 444 111111 111 8 11 555555555 6 44444 6 99 22 0 444 7777777777777777777777777777 3 33
lowQualScore : .. . ... . . . .. . . . .... .. . . . . . . . . ..... . . . . . . .... .... . ........ . . . . . ..... . .... . ....... ... . . ..... ...... .......... .. . ................ .. . ..... .. . ..... . . . .. .. . . . ... .. . . .... ........ .... . ....... . . ............ .. ....................... . .. .. ..... . . . .................. . . . . .. ............ . . ...... . .. .................... . ............... . ... ...... ... . .. ......... . ..... . .. .. . ... ............................ . ..
lowQualScore : 99 0 222 0 3 3 00 6 6 6 7777 00 6 1 3 3 1 9 7 9 77777 1 3 3 6 0 0 5555 2222 4 11111111 4 4 1 4 4 77777 2 3333 7 7777777 777 7 7 33333 444444 9999999999 99 0 0000000000000000 99 0 88888 11 3 33333 0 0 0 11 11 4 6 3 888 99 0 6 0000 22222222 7777 3 8888888 6 7 000000000000 66 77777777777777777777777 6 00 00 66666 0 1 7 999999999999999999 4 0 8 8 00 000000000000 2 0 000000 5 22 00000000000000000000 0 444444444444444 6 888 222222 777 0 88 333333333 7 88888 7 22 00 8 000 2222222222222222222222222222 2 22
consensus : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGAC---AAACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
Reference ( family-816 ) : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACATAAAACTTTCG-GCT--AGG--CTTATCGTATAACCGACCGCCTCCTGGCGGCCGGTA
gi|1 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACATGC--A-TATGGTG-TGG-TTACAAAGA-AATTTCTCTC-GCAGACATG-T-----AGACAA-AGTGATGTCAGATGAAGC-T-CT-TTAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATGAAATACGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTAACTTATTGGAGTT--AATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACG------TCA---------AAACTCC--AGA-ACTA-----TAT--------GTG--TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATTGTC-----GTTG-GTTGAAT-A-GGAAATT--TCGCAATATAT--TCCCTGTCT-C-A-GAAG---AAT--CCAA-TTATAAAAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--A---TA-----A-A-TTTCTACGAAA-ACAGAAAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGG-TTG--------AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTATTTTTTG---T-TTATTACTTCTATTTCTT-TTGAAAA-TGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATAA---TTA-TAAATTCTACGCAATT-ATAAT-TATTTTTCTGAA--T-T--AACATGTTC-----ATAACTCCGCAC-A---ACAC--------AAATTTTCGAACT--AGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|10 : TTG-GTTGAAT-A-GGAAATC--TTTTAATATAT--TCCATGCTT-C-A-CAAG---AGC--CGAA-TT----AAA--------CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA----AGTATACATA--TACAC----A------------------TCTT-ATTTCATGACA--AT--TAGAAT-ACA-TTTCTTCAAAA-ACAGAGAA----AATATATAACTATCGTGTTCAAGAAAATCTTTGTTTT
gi|11 : taAACTCC--AGAGACTACCATGTATAA------GCG--TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTT--TCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTCT-CAA-CAAA---AATA-CTAAGTTGA--GAG--------CATG----AT-T-------
gi|12 : TTTTAAAGCA-TA-A-ATA-TGTGGATTTT-GA--AATG--TCA-AG-ATTGAAAG----GCAAA-TATAGTG-TGATTTGCAAGGACAAATTCCCTC-A----------------GGCAA-AGTGATGTCGGCCCAAGgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|13 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttct-----TTATTTATTACA-T-TTATTACTTCTATTTGTTAT--GAAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGAC---TTA-TT-ATTCTACGT--TC-AT-ATATATTTTTTTAAAATT-T--AAAATGTTCATAATATAACTCCGCACAA---ACACTTGACt
gi|14 : AA--A---AACCCTTGCCA-----TTATTTTTTTGCATATTATTACTTCTATTTGTT-T--------------TGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATAC---TTA-TCAATTTTACGT--TT-TT-GT-TA-TTTCTTAAA--T-TTCAACATGTTCATATGATAACTCCGCACAA---ACACGCGAtt
gi|15 : -------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGG-TTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA-------------------------ACTTCTGTTT---------------GT-TTGAAAATACATTTTT---------CATCAATACCAT--ATGATATAC---TT
gi|16 : tAAAACCAT--ATAATATACAAATTACTTAATTCCATGT--TTTAT-AT-TGTTTTATT--A--T-T--AACATGTTCATG--ATAA-TCCGCACAACACACACACAACATAAAACTTTCA-GTTTAAAA--CTTTTCATATAACAGACCGCCTCCTGACAGC
gi|17 : AA-T-----ACA------TTA---------CAACTCC--AGA-ACTA-----TATATTTAA--GCG--TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTTCTC-----GTTT-GTTGAAA-A-GGAAATA--TCGTATTATAT--TCCCCG
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTTTC-ACAGACATG-T-----GGACTA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG-----------------------------------ACGT-GTATAGAATATGA---------GAA-CTC-GGAATGAAAAACTattagccaagtcctttacactttaatatgaatt
gi|19 : A-AA-A-ATA-CGTGGA-TTT-GAACAATGTAAGA-AG-ACTGAAAG----------CATAGTG-TGA-T
gi|2 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTTTTAA--CA-AT-A-ATAATA-GGA-TTTTGA--AATG-AACT-AG-ATTGAAAG----GC--A-TA-AGTGGCGA-TTACAGGAA-AAATTCTCTC-ACAGACATGGC-----AAACAA-AGTGATGTCAGCC-AAGC-TTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA-----TTGC--TTCAAATG----AC-------AAC---TGTTCAACAAATATACAC-AAAAT-----ACA------TCT---------CAACTCCTCACA-GCTAA----TAT--------GAAATCCT-TCTTTA-----ATGTTCAGCTGCTTTTATATTAGCGTC-----GTTG-GTGGAATAA-GGAAATC--TAGTA--ATAT--CCCCTGTCT-C-ATCACA---GAT--CCCG-TTC---AAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA----G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCCATGACA--AT--TAGAAT-----TTCCTACAAAA-AAAGAAAA----A-------------
gi|20 : -CAAG---AAT--CTAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA----GTACGT--TA--TACAC----A------------------TCTT-ATTCCTTAACA--AT--TAGAAT-AGA-TGTCTACGTAA-ACAGAGAA----A-------------ATATtacaact
gi|21 : TA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TAaactatcgtgttaa
gi|22 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttTTTAA--CA-AATC-ATG-TGTGGA-TTT-GG--AATA-AACG-AGTAGTTAGAG----GC--A-TAGTGTG-C-A-TTACA--GG-AAATTCTCTCGACAGACgttattattaaataaaaa
gi|23 : CTCTC-ACAGACATG-T-----GGACAA-AGTGATGATTGACCAAGT-T-CG-ATAAA-TG-TAA----ATGCTTT----AACCA-TC--------T-ATACGT-GTATGAAATATGAAA-GGTCGTAAA-CTC-GGAATGAAgattatgcgttttcgatcggaagctctt
gi|24 : -A-CCAG---AAT--CACA-TT----AAA--------CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA----G-------TA--TACAC----A------------------TCTT-ATTT-----CA--AT--TAGAATAA-A-TCTCTATGAAA-AC
gi|25 : gtgattaaatgtatCATG-T-----GGACAA-AGTGGGGTCAGCCCAAGC-T-GT-AAAGA-TA-TAG----ATGCTTTTATTAATCA-TC--------T-AGATAT-GTATAAAATCTGAAAGGGTCATAAA-CTT-GGAATGAAt
gi|26 : T-T-------TTGAAAAGA-TAACCAT-AAAAAA---G-------TA--TATACCC--A------------------TTTT-ATTCCATGACA--AT--TCGAATAA-A-TTTCTACGAAA-ACAGAGAA----A-------------ATATTA
gi|27 : CGT--TT-TT-AT-TATTTTTGTT----T-T--AACATGTTCATA--AGAACTACTCACAA---ACACAC-------AACT------------A--CTTA--AAACAACCGACCGCCTCCTGGCAGCctgtcgtgtt
gi|28 : gt-AAATTCTC---ACAGACATA-T-----TAACAA-AGTGATATCAGCCCACGC-T-CT-ATAAA-TG-TAGATCTATGCTTT----AATGA-TC--------T-GTACGT-GTATAAA
gi|29 : AGTG-TGG-TTACAAGGA-AAATTCTCCC-AAAGACATG-TCAACGGGACAA----------AGCCAAAGCTT-CT-ATAAATTGTTAG----AT
gi|3 : TTTTAA--CA-AA-T-ATA-TGAGGA-TTT-GA--AATG-AACT-AG-ATTGAAAG----GC--A-TA--GTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-C-----AAACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGTTTT----AATCA-TT--------T-ATACGT-GTATAACACATGAAAGGATCGTAAA-CTC-TGAATGAAAAGCTA-----TTGGCTTC--A-TG----AC-------AAC---TGTTCAACAAATATACACAAAA-T-----ACA------TCT---------CAACTCC--ACA-GCTA-----TAT--------GAG--TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATCGTC-----GTTG-GTGGAAT-A-GGAAATC--TAGTAATATAT--CCCCTGTCT-C-A-CAAG---AAT--CCGT-TC----AAA--------TATG----A--T-------TTAAAAAGA-TAACCATAAAAAA----G-------TA--TATAC----ACCTCAAAGTATATACACCTCTT-ATTCCATGACA--AT--TAGAAT-----TTCCTACAAAA-ACAGAAAA----
gi|30 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-tacaacta
gi|31 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----AC--A-GATAGTG-TGA-TTACAAGGA-A----------------ATG-T-----GGACAA-AGT
gi|32 : -AAACTCTTTC-ACAGACCTG-T-----GGACCA-AGTGGGGTCAGCCCAAGC-T-CT-A
gi|33 : ATCGCATAACCGACCGCCTCCTGGCGGCCAATAa
gi|34 : ATAGTG-CGA-TTACAAGTT-AAATTTTCTC-ACAGACATG-atga
gi|4 : ATGTCATCCCAAGC-T-CT-ATAAA-TG-TAG----ATACATT----AATCA-TCCACAAATTT-ATACGT-GTATAAAATATGACAGGATCATAAT-CTC-GGAATGAAAAACT-------CAAAGTT--TTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAA-TTAAATACA------TCA---------AA----C--AG-----------------------CG--TCT-TCTTT---------------------TATATTATTGTC-----GTTG-GTTGAAA-A-GGAATTC--TCGTAATATAT--TCCCCATCT-C-A-CAAGATTAAT--CTAG-TT-----AA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATGG-------TATTTACAC----T------------------TGTT-ATTCCATTACAATAT--TAGAATAA-A-TTTCTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGTTT---------AACGCGATTTGTTACGAAAGGA
gi|5 : gacctgtaaatTA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAA----GC--A-TCTAGTT-CGA-TTACAAGGA-AAATTCTCTC-ACATACATA-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CTAAAAAA-TG-T-G----ATGCTTTTGA-AATCA-TC--------T-ATACGT-GTATAAAGTATGAAAGGATCGTAAA-C----------------A-----TTGGAGTT--ATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAA-T-----ACATGTACGTCA---------AAACTTC--AGA-ACTA-----CATGTATATAAGCA--TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATTGTC-----GTTG-GATTAAT-A-GAAAATC--TCGTAATATAT--TTCCCGTCT-C-A-CAAG---AAT--
gi|6 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttc-A-CCAG---AAT--CAAA-TT----AAG--------AATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA----G-------TA--TAATA----A------------------TCTT-ATTTCATGATA--AT--TAGAAT-A-AATCTCTACGAAA-ACT----A----A-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT------------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATTTT---T-TTATTACCTCTATTTGTTGT--GAAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATCAT---T------C---TTA-TAAATTCTACG----------T-TATTCTTTTTAA--TCT--AACATGTTCA
gi|7 : gttaaatgtatAGGGTCGTAAA-TTC-GGAATGAAAAACCA-----TTGGAGCA--ATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACA-T-----ACA------TCATACATTGTGTAAGTCC--AGA-ACTG-----TAA--------ACG--TCT-TCTTAG----TATGGACAGCTGCT
gi|7 : TT--TCGTAATATATATTCCCTGTCT-C-A-TAAA---AAT--CTAC-TTT---AAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT-AAAA-----G-------TA--AACAC----A------------------TCTT-ATTCCATGAGA--AT--TAGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|8 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTAA--CATAA-ATATA-TGTGGA-TTT-GA--AATG-TTCAGAG-ATTGAAAG----GC--AATATAGTG-TAG-TTGCAAGGA-CAATTCTCTC-A-----------------GCAACAGTGATGTCGGCCCAGGT-T-
gi|9 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcCCGTCTGT-G-TGAG---AATGCCGAA-TT----AAA--------CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA----G-------TA--TAaa
gi|9 : atctccctgtCCAT-ATA--------------TA--TACATGTATA------------------TCTT-GTTCCATGACA--ATATTAGAAT-A-AATCTCTACGAAA-TTAACTAT----C-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Ttttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat
Alignments
lowQualScore : 1111 11111111 11111 1111 2222222 111 11111 111111 2222222222 4444444444444444 11111 11111 2222 11111111 1111111 222222222222 55555555555555555555555 22222 222222222222222222 555555555555 222222 11 33333333333333333333 555555555555555 111111 111 111111111 11111 22 111 222222222 666666666666666
lowQualScore : 77 5 777 4 3 3 55 3 3 3 7777 55 3 2 3 3 3 2 0 2 77777 3 3 3 3 4 4 8888 7777 4 66666666 4 4 0 4 4 66666 3 2222 6 1111111 111 6 5 44444 666666 3333333333 66 5 4444444444444444 66 5 00000 66 6 44444 5 5 5 66 66 4 3 3 555 77 1 3 0000 33333333 7777 3 0000000 3 6 333333333333 44 99999999999999999999999 3 55 55 44444 4 0 3 777777777777777777 1 8 0 0 99 444444444444 0 1 666666 2 22 55555555555555555555 5 555555555555555 0 444 111111 111 8 11 555555555 6 44444 6 99 22 0 444 0 777777777 333333333333333 3 1
lowQualScore : .. . ... . . . .. . . . .... .. . . . . . . . . ..... . . . . . . .... .... . ........ . . . . . ..... . .... . ....... ... . . ..... ...... .......... .. . ................ .. . ..... .. . ..... . . . .. .. . . . ... .. . . .... ........ .... . ....... . . ............ .. ....................... . .. .. ..... . . . .................. . . . . .. ............ . . ...... . .. .................... . ............... . ... ...... ... . .. ......... . ..... . .. .. . ... . ......... ............... . .
lowQualScore : 99 0 222 0 3 3 00 6 6 6 7777 00 6 1 3 3 1 9 7 9 77777 1 3 3 6 0 0 5555 2222 4 11111111 4 4 1 4 4 77777 2 3333 7 7777777 777 7 7 33333 444444 9999999999 99 0 0000000000000000 99 0 88888 11 3 33333 0 0 0 11 11 4 6 3 888 99 0 6 0000 22222222 7777 3 8888888 6 7 000000000000 66 77777777777777777777777 6 00 00 66666 0 1 7 999999999999999999 4 0 8 8 00 000000000000 2 0 000000 5 22 00000000000000000000 0 444444444444444 6 888 222222 777 0 88 333333333 7 88888 7 22 00 8 000 8 222222222 333333333333333 2 2
consensus : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
Reference ( family-816 ) : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
gi|1 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACATGC--A-TATGGTG-TGG-TTACAAAGA-AATTTCTCTC-GCAGACATG-T-----AGACAA-AGTGATGTCAGATGAAGC-T-CT-TTAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATGAAATACGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTAACTTATTGGAGTT--AATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACG------TCA---------AAACTCC--AGA-ACTA-----TAT--------GTG--TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATTGTC-----GTTG-GTTGAAT-A-GGAAATT--TCGCAATATAT--TCCCTGTCT-C-A-GAAG---AAT--CCAA-TTATAAAAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--A---TA-----A-A-TTTCTACGAAA-ACAGAAAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGG-TTG--------AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTATTTTTTG---T-TTATTACTTCTATTTCTT-TTGAAAA-TGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATAA---TTA-TAAATTCTACGCAATT-ATAAT-TATTTTTCTGAA--T-T--AACATGTTC-----ATAACTCCGCAC-A---AC-----ACA---AATTTTCGAACT--AGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|10 : TTG-GTTGAAT-A-GGAAATC--TTTTAATATAT--TCCATGCTT-C-A-CAAG---AGC--CGAA-TT----AAA--------CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA----AGTATACATA--TACAC----A------------------TCTT-ATTTCATGACA--AT--TAGAAT-ACA-TTTCTTCAAAA-ACAGAGAA----AATATATAACTATCGTGTTCAAGAAAATCTTTGTTTT
gi|11 : taAACTCC--AGAGACTACCATGTATAA------GCG--TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTT--TCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTCT-CAA-CAAA---AATA-CTAAGTTGA--GAG--------CATG----AT-T-------
gi|12 : TTTTAAAGCA-TA-A-ATA-TGTGGATTTT-GA--AATG--TCA-AG-ATTGAAAG----GCAAA-TATAGTG-TGATTTGCAAGGACAAATTCCCTC-A----------------GGCAA-AGTGATGTCGGCCCAAGgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|13 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttct-----TTATTTATTACA-T-TTATTACTTCTATTTGTTAT--GAAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGAC---TTA-TT-ATTCTACGT--TC-AT-ATATATTTTTTTAAAATT-T--AAAATGTTCATAATATAACTCCGCACAA---ACACTTGACt
gi|14 : AA--A---AACCCTTGCCA-----TTATTTTTTTGCATATTATTACTTCTATTTGTT-T--------------TGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATAC---TTA-TCAATTTTACGT--TT-TT-GT-TA-TTTCTTAAA--T-TTCAACATGTTCATATGATAACTCCGCACAA---ACACGCGAtt
gi|15 : -------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGG-TTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA-------------------------ACTTCTGTTT---------------GT-TTGAAAATACATTTTT---------CATCAATACCAT--ATGATATAC---TT
gi|16 : tAAAACCAT--ATAATATACAAATTACTTAATTCCATGT--TTTAT-AT-TGTTTTATT--A--T-T--AACATGTTCATG--ATAA-TCCGCACAACACACACACAACATAAAACTTTCA-GTTTAAAA--CTTTTCATATAACAGACCGCCTCCTGACAGC
gi|17 : AA-T-----ACA------TTA---------CAACTCC--AGA-ACTA-----TATATTTAA--GCG--TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTTCTC-----GTTT-GTTGAAA-A-GGAAATA--TCGTATTATAT--TCCCCG
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTTTC-ACAGACATG-T-----GGACTA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG-----------------------------------ACGT-GTATAGAATATGA---------GAA-CTC-GGAATGAAAAACTattagccaagtcctttacactttaatatgaatt
gi|19 : A-AA-A-ATA-CGTGGA-TTT-GAACAATGTAAGA-AG-ACTGAAAG----------CATAGTG-TGA-T
gi|2 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTTTTAA--CA-AT-A-ATAATA-GGA-TTTTGA--AATG-AACT-AG-ATTGAAAG----GC--A-TA-AGTGGCGA-TTACAGGAA-AAATTCTCTC-ACAGACATGGC-----AAACAA-AGTGATGTCAGCC-AAGC-TTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA-----TTGC--TTCAAATG----AC-------AAC---TGTTCAACAAATATACAC-AAAAT-----ACA------TCT---------CAACTCCTCACA-GCTAA----TAT--------GAAATCCT-TCTTTA-----ATGTTCAGCTGCTTTTATATTAGCGTC-----GTTG-GTGGAATAA-GGAAATC--TAGTA--ATAT--CCCCTGTCT-C-ATCACA---GAT--CCCG-TTC---AAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA----G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCCATGACA--AT--TAGAAT-----TTCCTACAAAA-AAAGAAAA----A-------------
gi|20 : -CAAG---AAT--CTAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA----GTACGT--TA--TACAC----A------------------TCTT-ATTCCTTAACA--AT--TAGAAT-AGA-TGTCTACGTAA-ACAGAGAA----A-------------ATATtacaact
gi|21 : TA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TAaactatcgtgttaa
gi|22 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttTTTAA--CA-AATC-ATG-TGTGGA-TTT-GG--AATA-AACG-AGTAGTTAGAG----GC--A-TAGTGTG-C-A-TTACA--GG-AAATTCTCTCGACAGACgttattattaaataaaaa
gi|23 : CTCTC-ACAGACATG-T-----GGACAA-AGTGATGATTGACCAAGT-T-CG-ATAAA-TG-TAA----ATGCTTT----AACCA-TC--------T-ATACGT-GTATGAAATATGAAA-GGTCGTAAA-CTC-GGAATGAAgattatgcgttttcgatcggaagctctt
gi|24 : -A-CCAG---AAT--CACA-TT----AAA--------CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA----G-------TA--TACAC----A------------------TCTT-ATTT-----CA--AT--TAGAATAA-A-TCTCTATGAAA-AC
gi|25 : gtgattaaatgtatCATG-T-----GGACAA-AGTGGGGTCAGCCCAAGC-T-GT-AAAGA-TA-TAG----ATGCTTTTATTAATCA-TC--------T-AGATAT-GTATAAAATCTGAAAGGGTCATAAA-CTT-GGAATGAAt
gi|26 : T-T-------TTGAAAAGA-TAACCAT-AAAAAA---G-------TA--TATACCC--A------------------TTTT-ATTCCATGACA--AT--TCGAATAA-A-TTTCTACGAAA-ACAGAGAA----A-------------ATATTA
gi|27 : CGT--TT-TT-AT-TATTTTTGTT----T-T--AACATGTTCATA--AGAACTACTCACAA---ACACAC-------AACT------------A--CTTA--AAACAACCGACCGCCTCCTGGCAGCctgtcgtgtt
gi|28 : gt-AAATTCTC---ACAGACATA-T-----TAACAA-AGTGATATCAGCCCACGC-T-CT-ATAAA-TG-TAGATCTATGCTTT----AATGA-TC--------T-GTACGT-GTATAAA
gi|29 : AGTG-TGG-TTACAAGGA-AAATTCTCCC-AAAGACATG-TCAACGGGACAA----------AGCCAAAGCTT-CT-ATAAATTGTTAG----AT
gi|3 : TTTTAA--CA-AA-T-ATA-TGAGGA-TTT-GA--AATG-AACT-AG-ATTGAAAG----GC--A-TA--GTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-C-----AAACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGTTTT----AATCA-TT--------T-ATACGT-GTATAACACATGAAAGGATCGTAAA-CTC-TGAATGAAAAGCTA-----TTGGCTTC--A-TG----AC-------AAC---TGTTCAACAAATATACACAAAA-T-----ACA------TCT---------CAACTCC--ACA-GCTA-----TAT--------GAG--TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATCGTC-----GTTG-GTGGAAT-A-GGAAATC--TAGTAATATAT--CCCCTGTCT-C-A-CAAG---AAT--CCGT-TC----AAA--------TATG----A--T-------TTAAAAAGA-TAACCATAAAAAA----G-------TA--TATAC----ACCTCAAAGTATATACACCTCTT-ATTCCATGACA--AT--TAGAAT-----TTCCTACAAAA-ACAGAAAA----
gi|30 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-tacaacta
gi|31 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----AC--A-GATAGTG-TGA-TTACAAGGA-A----------------ATG-T-----GGACAA-AGT
gi|32 : -AAACTCTTTC-ACAGACCTG-T-----GGACCA-AGTGGGGTCAGCCCAAGC-T-CT-A
gi|33 : ATCGCATAACCGACCGCCTCCTGGCGGCCAATAa
gi|34 : ATAGTG-CGA-TTACAAGTT-AAATTTTCTC-ACAGACATG-atga
gi|4 : ATGTCATCCCAAGC-T-CT-ATAAA-TG-TAG----ATACATT----AATCA-TCCACAAATTT-ATACGT-GTATAAAATATGACAGGATCATAAT-CTC-GGAATGAAAAACT-------CAAAGTT--TTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAA-TTAAATACA------TCA---------AA----C--AG-----------------------CG--TCT-TCTTT---------------------TATATTATTGTC-----GTTG-GTTGAAA-A-GGAATTC--TCGTAATATAT--TCCCCATCT-C-A-CAAGATTAAT--CTAG-TT-----AA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATGG-------TATTTACAC----T------------------TGTT-ATTCCATTACAATAT--TAGAATAA-A-TTTCTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGTTT---------AACGCGATTTGTTACGAAAGGA
gi|5 : gacctgtaaatTA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAA----GC--A-TCTAGTT-CGA-TTACAAGGA-AAATTCTCTC-ACATACATA-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CTAAAAAA-TG-T-G----ATGCTTTTGA-AATCA-TC--------T-ATACGT-GTATAAAGTATGAAAGGATCGTAAA-C----------------A-----TTGGAGTT--ATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAA-T-----ACATGTACGTCA---------AAACTTC--AGA-ACTA-----CATGTATATAAGCA--TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATTGTC-----GTTG-GATTAAT-A-GAAAATC--TCGTAATATAT--TTCCCGTCT-C-A-CAAG---AAT--
gi|6 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttc-A-CCAG---AAT--CAAA-TT----AAG--------AATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA----G-------TA--TAATA----A------------------TCTT-ATTTCATGATA--AT--TAGAAT-A-AATCTCTACGAAA-ACT----A----A-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT------------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATTTT---T-TTATTACCTCTATTTGTTGT--GAAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATCAT---T------C---TTA-TAAATTCTACG----------T-TATTCTTTTTAA--TCT--AACATGTTCA
gi|7 : gttaaatgtatAGGGTCGTAAA-TTC-GGAATGAAAAACCA-----TTGGAGCA--ATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACA-T-----ACA------TCATACATTGTGTAAGTCC--AGA-ACTG-----TAA--------ACG--TCT-TCTTAG----TATGGACAGCTGCT
gi|7 : TT--TCGTAATATATATTCCCTGTCT-C-A-TAAA---AAT--CTAC-TTT---AAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT-AAAA-----G-------TA--AACAC----A------------------TCTT-ATTCCATGAGA--AT--TAGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|8 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTAA--CATAA-ATATA-TGTGGA-TTT-GA--AATG-TTCAGAG-ATTGAAAG----GC--AATATAGTG-TAG-TTGCAAGGA-CAATTCTCTC-A-----------------GCAACAGTGATGTCGGCCCAGGT-T-
gi|9 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcCCGTCTGT-G-TGAG---AATGCCGAA-TT----AAA--------CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA----G-------TA--TAaa
gi|9 : atctccctgtCCAT-ATA--------------TA--TACATGTATA------------------TCTT-GTTCCATGACA--ATATTAGAAT-A-AATCTCTACGAAA-TTAACTAT----C-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Ttttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat
Alignments
lowQualScore : 1111 11111111 11111 1111 2222222 111 11111 111111 2222222222 4444444444444444 11111 11111 2222 11111111 1111111 222222222222 55555555555555555555555 22222 222222222222222222 555555555555 222222 11 33333333333333333333 555555555555555 111111 111 111111111 11111 22 111 222222222 666666666666666
lowQualScore : 77 5 777 4 3 3 55 3 3 3 7777 55 3 2 3 3 3 2 0 2 77777 3 3 3 3 4 4 8888 7777 4 66666666 4 4 0 4 4 66666 3 2222 6 1111111 111 6 5 44444 666666 3333333333 66 5 4444444444444444 66 5 00000 66 6 44444 5 5 5 66 66 4 3 3 555 77 1 3 0000 33333333 7777 3 0000000 3 6 333333333333 44 99999999999999999999999 3 55 55 44444 4 0 3 777777777777777777 1 8 0 0 99 444444444444 0 1 666666 2 22 55555555555555555555 5 555555555555555 0 444 111111 111 8 11 555555555 6 44444 6 99 22 0 444 0 777777777 333333333333333 3 1
lowQualScore : .. . ... . . . .. . . . .... .. . . . . . . . . ..... . . . . . . .... .... . ........ . . . . . ..... . .... . ....... ... . . ..... ...... .......... .. . ................ .. . ..... .. . ..... . . . .. .. . . . ... .. . . .... ........ .... . ....... . . ............ .. ....................... . .. .. ..... . . . .................. . . . . .. ............ . . ...... . .. .................... . ............... . ... ...... ... . .. ......... . ..... . .. .. . ... . ......... ............... . .
lowQualScore : 99 0 222 0 3 3 00 6 6 6 7777 00 6 1 3 3 1 9 7 9 77777 1 3 3 6 0 0 5555 2222 4 11111111 4 4 1 4 4 77777 2 3333 7 7777777 777 7 7 33333 444444 9999999999 99 0 0000000000000000 99 0 88888 11 3 33333 0 0 0 11 11 4 6 3 888 99 0 6 0000 22222222 7777 3 8888888 6 7 000000000000 66 77777777777777777777777 6 00 00 66666 0 1 7 999999999999999999 4 0 8 8 00 000000000000 2 0 000000 5 22 00000000000000000000 0 444444444444444 6 888 222222 777 0 88 333333333 7 88888 7 22 00 8 000 8 222222222 333333333333333 2 2
consensus : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
Reference ( family-816 ) : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
gi|1 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACATGC--A-TATGGTG-TGG-TTACAAAGA-AATTTCTCTC-GCAGACATG-T-----AGACAA-AGTGATGTCAGATGAAGC-T-CT-TTAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATGAAATACGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTAACTTATTGGAGTT--AATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACG------TCA---------AAACTCC--AGA-ACTA-----TAT--------GTG--TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATTGTC-----GTTG-GTTGAAT-A-GGAAATT--TCGCAATATAT--TCCCTGTCT-C-A-GAAG---AAT--CCAA-TTATAAAAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--A---TA-----A-A-TTTCTACGAAA-ACAGAAAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGG-TTG--------AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTATTTTTTG---T-TTATTACTTCTATTTCTT-TTGAAAA-TGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATAA---TTA-TAAATTCTACGCAATT-ATAAT-TATTTTTCTGAA--T-T--AACATGTTC-----ATAACTCCGCAC-A---AC-----ACA---AATTTTCGAACT--AGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|10 : TTG-GTTGAAT-A-GGAAATC--TTTTAATATAT--TCCATGCTT-C-A-CAAG---AGC--CGAA-TT----AAA--------CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA----AGTATACATA--TACAC----A------------------TCTT-ATTTCATGACA--AT--TAGAAT-ACA-TTTCTTCAAAA-ACAGAGAA----AATATATAACTATCGTGTTCAAGAAAATCTTTGTTTT
gi|11 : taAACTCC--AGAGACTACCATGTATAA------GCG--TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTT--TCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTCT-CAA-CAAA---AATA-CTAAGTTGA--GAG--------CATG----AT-T-------
gi|12 : TTTTAAAGCA-TA-A-ATA-TGTGGATTTT-GA--AATG--TCA-AG-ATTGAAAG----GCAAA-TATAGTG-TGATTTGCAAGGACAAATTCCCTC-A----------------GGCAA-AGTGATGTCGGCCCAAGgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|13 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttct-----TTATTTATTACA-T-TTATTACTTCTATTTGTTAT--GAAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGAC---TTA-TT-ATTCTACGT--TC-AT-ATATATTTTTTTAAAATT-T--AAAATGTTCATAATATAACTCCGCACAA---ACACTTGACt
gi|14 : AA--A---AACCCTTGCCA-----TTATTTTTTTGCATATTATTACTTCTATTTGTT-T--------------TGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATAC---TTA-TCAATTTTACGT--TT-TT-GT-TA-TTTCTTAAA--T-TTCAACATGTTCATATGATAACTCCGCACAA---ACACGCGAtt
gi|15 : -------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGG-TTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA-------------------------ACTTCTGTTT---------------GT-TTGAAAATACATTTTT---------CATCAATACCAT--ATGATATAC---TT
gi|16 : tAAAACCAT--ATAATATACAAATTACTTAATTCCATGT--TTTAT-AT-TGTTTTATT--A--T-T--AACATGTTCATG--ATAA-TCCGCACAACACACACACAACATAAAACTTTCA-GTTTAAAA--CTTTTCATATAACAGACCGCCTCCTGACAGC
gi|17 : AA-T-----ACA------TTA---------CAACTCC--AGA-ACTA-----TATATTTAA--GCG--TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTTCTC-----GTTT-GTTGAAA-A-GGAAATA--TCGTATTATAT--TCCCCG
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTTTC-ACAGACATG-T-----GGACTA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG-----------------------------------ACGT-GTATAGAATATGA---------GAA-CTC-GGAATGAAAAACTattagccaagtcctttacactttaatatgaatt
gi|19 : A-AA-A-ATA-CGTGGA-TTT-GAACAATGTAAGA-AG-ACTGAAAG----------CATAGTG-TGA-T
gi|2 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTTTTAA--CA-AT-A-ATAATA-GGA-TTTTGA--AATG-AACT-AG-ATTGAAAG----GC--A-TA-AGTGGCGA-TTACAGGAA-AAATTCTCTC-ACAGACATGGC-----AAACAA-AGTGATGTCAGCC-AAGC-TTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA-----TTGC--TTCAAATG----AC-------AAC---TGTTCAACAAATATACAC-AAAAT-----ACA------TCT---------CAACTCCTCACA-GCTAA----TAT--------GAAATCCT-TCTTTA-----ATGTTCAGCTGCTTTTATATTAGCGTC-----GTTG-GTGGAATAA-GGAAATC--TAGTA--ATAT--CCCCTGTCT-C-ATCACA---GAT--CCCG-TTC---AAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA----G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCCATGACA--AT--TAGAAT-----TTCCTACAAAA-AAAGAAAA----A-------------
gi|20 : -CAAG---AAT--CTAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA----GTACGT--TA--TACAC----A------------------TCTT-ATTCCTTAACA--AT--TAGAAT-AGA-TGTCTACGTAA-ACAGAGAA----A-------------ATATtacaact
gi|21 : TA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TAaactatcgtgttaa
gi|22 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttTTTAA--CA-AATC-ATG-TGTGGA-TTT-GG--AATA-AACG-AGTAGTTAGAG----GC--A-TAGTGTG-C-A-TTACA--GG-AAATTCTCTCGACAGACgttattattaaataaaaa
gi|23 : CTCTC-ACAGACATG-T-----GGACAA-AGTGATGATTGACCAAGT-T-CG-ATAAA-TG-TAA----ATGCTTT----AACCA-TC--------T-ATACGT-GTATGAAATATGAAA-GGTCGTAAA-CTC-GGAATGAAgattatgcgttttcgatcggaagctctt
gi|24 : -A-CCAG---AAT--CACA-TT----AAA--------CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA----G-------TA--TACAC----A------------------TCTT-ATTT-----CA--AT--TAGAATAA-A-TCTCTATGAAA-AC
gi|25 : gtgattaaatgtatCATG-T-----GGACAA-AGTGGGGTCAGCCCAAGC-T-GT-AAAGA-TA-TAG----ATGCTTTTATTAATCA-TC--------T-AGATAT-GTATAAAATCTGAAAGGGTCATAAA-CTT-GGAATGAAt
gi|26 : T-T-------TTGAAAAGA-TAACCAT-AAAAAA---G-------TA--TATACCC--A------------------TTTT-ATTCCATGACA--AT--TCGAATAA-A-TTTCTACGAAA-ACAGAGAA----A-------------ATATTA
gi|27 : CGT--TT-TT-AT-TATTTTTGTT----T-T--AACATGTTCATA--AGAACTACTCACAA---ACACAC-------AACT------------A--CTTA--AAACAACCGACCGCCTCCTGGCAGCctgtcgtgtt
gi|28 : gt-AAATTCTC---ACAGACATA-T-----TAACAA-AGTGATATCAGCCCACGC-T-CT-ATAAA-TG-TAGATCTATGCTTT----AATGA-TC--------T-GTACGT-GTATAAA
gi|29 : AGTG-TGG-TTACAAGGA-AAATTCTCCC-AAAGACATG-TCAACGGGACAA----------AGCCAAAGCTT-CT-ATAAATTGTTAG----AT
gi|3 : TTTTAA--CA-AA-T-ATA-TGAGGA-TTT-GA--AATG-AACT-AG-ATTGAAAG----GC--A-TA--GTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-C-----AAACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGTTTT----AATCA-TT--------T-ATACGT-GTATAACACATGAAAGGATCGTAAA-CTC-TGAATGAAAAGCTA-----TTGGCTTC--A-TG----AC-------AAC---TGTTCAACAAATATACACAAAA-T-----ACA------TCT---------CAACTCC--ACA-GCTA-----TAT--------GAG--TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATCGTC-----GTTG-GTGGAAT-A-GGAAATC--TAGTAATATAT--CCCCTGTCT-C-A-CAAG---AAT--CCGT-TC----AAA--------TATG----A--T-------TTAAAAAGA-TAACCATAAAAAA----G-------TA--TATAC----ACCTCAAAGTATATACACCTCTT-ATTCCATGACA--AT--TAGAAT-----TTCCTACAAAA-ACAGAAAA----
gi|30 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-tacaacta
gi|31 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----AC--A-GATAGTG-TGA-TTACAAGGA-A----------------ATG-T-----GGACAA-AGT
gi|32 : -AAACTCTTTC-ACAGACCTG-T-----GGACCA-AGTGGGGTCAGCCCAAGC-T-CT-A
gi|33 : ATCGCATAACCGACCGCCTCCTGGCGGCCAATAa
gi|34 : ATAGTG-CGA-TTACAAGTT-AAATTTTCTC-ACAGACATG-atga
gi|4 : ATGTCATCCCAAGC-T-CT-ATAAA-TG-TAG----ATACATT----AATCA-TCCACAAATTT-ATACGT-GTATAAAATATGACAGGATCATAAT-CTC-GGAATGAAAAACT-------CAAAGTT--TTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAA-TTAAATACA------TCA---------AA----C--AG-----------------------CG--TCT-TCTTT---------------------TATATTATTGTC-----GTTG-GTTGAAA-A-GGAATTC--TCGTAATATAT--TCCCCATCT-C-A-CAAGATTAAT--CTAG-TT-----AA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATGG-------TATTTACAC----T------------------TGTT-ATTCCATTACAATAT--TAGAATAA-A-TTTCTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGTTT---------AACGCGATTTGTTACGAAAGGA
gi|5 : gacctgtaaatTA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAA----GC--A-TCTAGTT-CGA-TTACAAGGA-AAATTCTCTC-ACATACATA-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CTAAAAAA-TG-T-G----ATGCTTTTGA-AATCA-TC--------T-ATACGT-GTATAAAGTATGAAAGGATCGTAAA-C----------------A-----TTGGAGTT--ATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAA-T-----ACATGTACGTCA---------AAACTTC--AGA-ACTA-----CATGTATATAAGCA--TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATTGTC-----GTTG-GATTAAT-A-GAAAATC--TCGTAATATAT--TTCCCGTCT-C-A-CAAG---AAT--
gi|6 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttc-A-CCAG---AAT--CAAA-TT----AAG--------AATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA----G-------TA--TAATA----A------------------TCTT-ATTTCATGATA--AT--TAGAAT-A-AATCTCTACGAAA-ACT----A----A-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT------------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATTTT---T-TTATTACCTCTATTTGTTGT--GAAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATCAT---T------C---TTA-TAAATTCTACG----------T-TATTCTTTTTAA--TCT--AACATGTTCA
gi|7 : gttaaatgtatAGGGTCGTAAA-TTC-GGAATGAAAAACCA-----TTGGAGCA--ATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACA-T-----ACA------TCATACATTGTGTAAGTCC--AGA-ACTG-----TAA--------ACG--TCT-TCTTAG----TATGGACAGCTGCT
gi|7 : TT--TCGTAATATATATTCCCTGTCT-C-A-TAAA---AAT--CTAC-TTT---AAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT-AAAA-----G-------TA--AACAC----A------------------TCTT-ATTCCATGAGA--AT--TAGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|8 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTAA--CATAA-ATATA-TGTGGA-TTT-GA--AATG-TTCAGAG-ATTGAAAG----GC--AATATAGTG-TAG-TTGCAAGGA-CAATTCTCTC-A-----------------GCAACAGTGATGTCGGCCCAGGT-T-
gi|9 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcCCGTCTGT-G-TGAG---AATGCCGAA-TT----AAA--------CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA----G-------TA--TAaa
gi|9 : atctccctgtCCAT-ATA--------------TA--TACATGTATA------------------TCTT-GTTCCATGACA--ATATTAGAAT-A-AATCTCTACGAAA-TTAACTAT----C-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Ttttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat
blockSeqs : AG T TC A T T AC T G T . AA A T G T C G G CAACG C T T A T T ATCT TATT A CACAAATT G T A T . C CAAA C GGCAACT AAC A A TAAAT TGTACG TACATTGTGT TC G CATGTATATAA AT G GGTTT TA T TGTAA T A A CT AT G A T ATT GC G G GA TAATTCTT TTCT G GTTCTTG A A AGTATACA TT ACTCAAAGTATATAACACC A AT AT ACA T G AATATATAACTATC C C TT TTTACTCATGC T GGGG C TT AAACTTTATGATTTTT G ATGAAACTATGCA GAA GAATAT AAA C CA TTTTAT A AAAAT C TC AT CAC ACAACATAA TTCAGTTTAAAA T T
blockSeqs : . . AT . . . . . . . . . . T . . . . . . . . . . . . . TGA . . . . . . . A TT C . . . . . . C . . CCATGTATAA . . T AC C . . . . . . . . . . A T . C . . . . . A GTACGT . ACCTCAAAGTATATACACC . . . AGA . A CTACA A . A TTT A AGA C . TTATTTTTTTGCATA G GTGAAAATATGT AAC ACAT . . TA TTCAT . AAA . . TG . AC A T A
blockSeqs : . . A . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . A AT C . . . . . . C . . TATATTTAA . . T TT C . . . . . . . . . . . C . T . . . . . . AATGG . GTATA . . . AAA . G A A . T . G A . . TTATTTATTACAT G GT TTA ATGA . . AA TTTTT . TAA . . . . . C
blockSeqs : . . A . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . A AT . . . . . . . C . . ATAT . . T TT T . . . . . . . . . . . T . . . . . . . . AG . CCA . . . AAA . G A A . . . . T . ATAA . . T TTTTT . A . . . .
blockSeqs : . . A . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . A . . TAT . . T GC T . . . . . . . . . . . A . . . . . . . . G . A . . . AAA . A A A T . . . T . .
blockSeqs : . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . A . . TAA . . . GA . . . . . . . . . . . . C . . . . . . . . G . A . . . AAA . C A .
blockSeqs : . A . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . G . A . . . AAA . T C
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . G . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . G . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . G . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : **** ***** **** AAA** TTATTTTTT*********** TTTTT**** AA*** **
originalCons : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAAT-A-A-TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTATTTTTTN---T-TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGT--TT-AT-AT-TATTTTTTTNAA--T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
finalCons : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGTG-CGA-TTACAAGGA-AAATTCTCTC-ACAGACATG-T-----GGACAA-AGTGATGTCAGCCCAAGC-T-CT-ATAAA-TG-TAG----ATGCTTT----AATCA-TC--------T-ATACGT-GTATAAAATATGAAAGGGTCGTAAA-CTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAA-T-----ACA------TCA---------NAACTCC--AGA-ACTA-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAATAAA--TTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCATTATTTTTT-----------TTATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACGTTTTT----AT-TATTTTTTTAA---T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
Alignments
lowQualScore : 1111 11111111 11111 1111 2222222 111 1 11111 111111 222222222 333333333333333333 11111 11111 2222 11111111 1111111 222222222222 55555555555555555555555 222222222222222222 555555555555 222222 11 555555555555555555555555555 55555555555 111111 111 111 222222 22 111 222222222 666666666666666
lowQualScore : 77 5 777 4 3 3 55 3 3 3 7777 55 3 2 3 3 3 2 0 2 77777 3 6 3 4 4 8888 7777 4 66666666 4 4 0 4 4 66666 1 2222 6 1111111 111 3 44444 666666 1 000000000 66 5 999999999999999999 66 5 00000 66 6 44444 5 5 5 66 66 4 3 3 555 77 1 3 0000 33333333 7777 3 0000000 3 6 333333333333 44 99999999999999999999999 3 55 55 0 4 0 3 777777777777777777 1 8 0 0 99 444444444444 0 1 666666 2 22 000000000000000000000000000 0 33333333333 8 0 444 111111 111 8 11 111 1 6 6 6 000000 6 99 22 0 444 0 777777777 333333333333333 3 1
lowQualScore : .. . ... . . . .. . . . .... .. . . . . . . . . ..... . . . . . .... .... . ........ . . . . . ..... . .... . ....... ... . ..... ...... . ......... .. . .................. .. . ..... .. . ..... . . . .. .. . . . ... .. . . .... ........ .... . ....... . . ............ .. ....................... . .. .. . . . . .................. . . . . .. ............ . . ...... . .. ........................... . ........... . . ... ...... ... . .. ... . . . . ...... . .. .. . ... . ......... ............... . .
lowQualScore : 99 0 222 0 3 3 00 6 6 6 7777 00 6 1 3 3 1 9 7 9 77777 1 7 6 0 0 5555 2222 4 11111111 4 4 1 4 4 77777 0 3333 7 7777777 777 3 33333 444444 0 000000000 99 0 999999999999999999 99 0 88888 11 3 33333 0 0 0 11 11 4 6 3 888 99 0 6 0000 22222222 7777 3 8888888 6 7 000000000000 66 77777777777777777777777 6 00 00 8 0 1 7 999999999999999999 4 0 8 8 00 000000000000 2 0 000000 5 22 000000000000000000000000000 8 00000000000 0 6 888 222222 777 0 88 777 8 7 7 7 777777 7 22 00 8 000 8 222222222 333333333333333 2 2
consensus : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGT-GCGA-TTACAAGGA-AAATTCTCTC-ACAGACAT-GT-----GGACAA-AGTGATGTCAGCCCAAGC-TCT-ATAAA-TG-TAG----ATGCTTT----AATC-ATC--------T-ATACG-TGTATAAAATATGAAAGGGTCGT-AAACTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAAT-----ACA------TCANA---------ACTC--CAGA-ACT-A-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAATAAATTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTAT--TT-TT---TT------TATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACG---TTTT-TAT-TATTTTT-TT-AA---T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
Reference ( family-816 ) : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGT-GCGA-TTACAAGGA-AAATTCTCTC-ACAGACAT-GT-----GGACAA-AGTGATGTCAGCCCAAGC-TCT-ATAAA-TG-TAG----ATGCTTT----AATC-ATC--------T-ATACG-TGTATAAAATATGAAAGGGTCGT-AAACTC-GGAATGAAAAACTA-----TTGGAGTT--ATTGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAAT-----ACA------TCANA---------ACTC--CAGA-ACT-A-----TAT--------GCG--TCT-TCTTTG----TATGNCCAGCTGCTTTTGTATTATCGTC-----GTTG-GTTGAAT-A-GGAAATC--TCGTAATATAT--TCCCCGTCT-C-A-CAAG---AAT--CNAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGACA--AT--TAGAATAAATTTCTACGAAA-ACAGAGAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTCAAA-TTTTGG-TT---------AGCACGATTCGCTACGNAAGGAA--A---AACCCTTACCA-----TTAT--TT-TT---TT------TATTACTTCTATTTGTT-T--GAAA-TATGT-TTGAAAATACATTTTTGTTAAGAAACGTCAATACCAT--ATANTATAC---TTA-TNAATTCTACG---TTTT-TAT-TATTTTT-TT-AA---T-T--AACATGTTCATA--ATAACTCCGCACAA---ACACGCGACA---AACTTTCG-GCT--AGA--CTTATCATATAACCGACCGCCTCCTGGCGGCCGGTA
gi|1 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAGACATGC--A-TATGGT-GTGG-TTACAAAGA-AATTTCTCTC-GCAGACAT-GT-----AGACAA-AGTGATGTCAGATGAAGC-TCT-TTAAA-TG-TAG----ATGCTTT----AATC-ATC--------T-ATACG-TGTATGAAATACGAAAGGGTCGT-AAACTC-GGAATGAAAAACTAACTTATTGGAGTT--AATGCTTTAC-------AAC---TGTTCAACAAATATACAC-AAAT-----ACG------TCAAA---------ACTC--CAGA-ACT-A-----TAT--------GTG--TCT-TCCTTG----TATGGCCAGCTGCTTTTGTATTATTGTC-----GTTG-GTTGAAT-A-GGAAATT--TCGCAATATAT--TCCCTGTCT-C-A-GAAG---AAT--CCAA-TTATAAAAA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAA----G-------TA--TACAC----A------------------TCTT-ATTCCATGAC----------AATAAATTTCTACGAAA-ACAGAAAA----A-------------GTGTTAAAGAAAATCTTTGTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACTTGAAA-TTTTGG-TTG--------AGCAGGATTTGCTACGTAAGGAA--A---AACCCTTACCA-----TTAT--TT-TTTG-TT------TATTACTTCTATTTCTT-TTGAAAA-TGTGT-TTGAAAATACATTTTTGTTAAGAAATGTCAATACCAT--ATTCTATAA---TTA-TAAATTCTACGCAATTAT-AAT-TATTTTT-CTGAA---T-T--AACATGTTC-----ATAACTCCGCAC-A---AC-----ACA---AATTTTCGAACT--AGGCCCTTATCATATGACCTACCGCCTCCTGGCGGCCGGTA
gi|10 : TTG-GTTGAAT-A-GGAAATC--TTTTAATATAT--TCCATGCTT-C-A-CAAG---AGC--CGAA-TT----AAA--------CATG----AT-T-------TTGAAAAAAATAACTAC-AAAAA----AGTATACATA--TACAC----A------------------TCTT-ATTTCATGACA--AT--TAGAATACATTTCTTCAAAA-ACAGAGAA----AATATATAACTATCGTGTTCAAGAAAATCTTTGTTTT
gi|11 : taA---------ACTC--CAGAGACT-ACCATGTATAA------GCG--TCTGTCTTTGGGTTTGCGTACAGCTGCTTTTGTTTTTT--TCTGTAAGTTGTGTTAAAT-AAGGGAATCCTTCGTGATATAT--TCCCTGTCT-CAA-CAAA---AATA-CTAAGTTGA--GAG--------CATG----AT-T-------
gi|12 : TTTTAAAGCA-TA-A-ATA-TGTGGATTTT-GA--AATG--TCA-AG-ATTGAAAG----GCAAA-TATAGT-GTGATTTGCAAGGACAAATTCCCTC-A----------------GGCAA-AGTGATGTCGGCCCAAGgctcaaatggaaaatcaagtttttgtttaaaaaaataaat
gi|13 : aaataaatacacgtgaaacaatgactcaagcgtaaaaataagaacagaaaaaaaaaccggccgcaaccatgttgtttct-----TTAT--TTATTACATT------TATTACTTCTATTTGTTAT--GAAACTATGCATTGAAAATACATTTTTGTTCAGAAACGTTAATACCATGAATATTAGAC---TTA-TT-ATTCTACG---TTCA-TATATATTTTT-TT-AAAATT-T--AAAATGTTCATAATATAACTCCGCACAA---ACACTTGACt
gi|14 : AA--A---AACCCTTGCCA-----TTAT--TT-TT---TTGCATATTATTACTTCTATTTGTT-T--------------TGAAAATGCATTTTTGTTAAAACGCGTCGAAACCAT--ACATCATAC---TTA-TCAATTTTACG---TTTT-TGT-TATTTCT-TA-AA---T-TTCAACATGTTCATATGATAACTCCGCACAA---ACACGCGAtt
gi|15 : -------------GTGTTAAAGAAAAT----ATTTTAGATGATG-CCAATCACCAACATGATAATCCCGCACTTCAAATTTTTGG-TTTACTCATGCAGCATGATTCGCTACGTAAGGAAAGA---AA-----ACAA-------------------------------ACTTCTGTT---------------TGT-TTGAAAATACATTTTT---------CATCAATACCAT--ATGATATAC---TT
gi|16 : tAAAACCAT--ATAATATACAAATTACTTAATTCCATG---TTTTATAT-TGTTTTA-TT-A----T-T--AACATGTTCATG--ATAA-TCCGCACAACACACACACAACATAAAACTTTCA-GTTTAAAA--CTTTTCATATAACAGACCGCCTCCTGACAGC
gi|17 : AAT-----ACA------TTACA---------ACTC--CAGA-ACT-A-----TATATTTAA--GCG--TCT-TCCTTG----TATGACCAGCTGTTTCTGTATTTTTCTC-----GTTT-GTTGAAA-A-GGAAATA--TCGTATTATAT--TCCCCG
gi|18 : A-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TATAGT-GCGA-TTACAAGGA-AAATTCTTTC-ACAGACAT-GT-----GGACTA-AGTGATGTCAGCCCAAGC-TCT-ATAAA-TG-TAG-----------------------------------ACG-TGTATAGAATATGA----------GAACTC-GGAATGAAAAACTattagccaagtcctttacactttaatatgaatt
gi|19 : A-AA-A-ATA-CGTGGA-TTT-GAACAATGTAAGA-AG-ACTGAAAG----------CATAGT-GTGA-T
gi|2 : acaagaaacaagctcaccaagcataaaaaaacccggcccgacaaaccatttgtttcttttaagcaaagatgtctTTTTAA--CA-AT-A-ATAATA-GGA-TTTTGA--AATG-AACT-AG-ATTGAAAG----GC--A-TA-AGTGGCGA-TTACAGGAA-AAATTCTCTC-ACAGACATGGC-----AAACAA-AGTGATGTCAG-CCAAGCTTCT-ATAAA-TG-TAG----ATGTTTT----AATCAATT--------TGATACGTTGTATAACACATGAAAGGATTGTAAAACTCTGGAATGAAAAGCTA-----TTG--CTTCAAATG----AC-------AAC---TGTTCAACAAATATACACAAAAT-----ACA------TCTCA---------ACTCCTCACA-GCTAA-----TAT--------GAAATCCT-TCTTTA-----ATGTTCAGCTGCTTTTATATTAGCGTC-----GTTG-GTGGAATAA-GGAAATC--TAGTA--ATAT--CCCCTGTCT-C-ATCACA---GAT--CCCG-TTC---AAATAATTCTTCATGTTCTAT-TGTTCTTGTTAAAAAGA-T-ACCAT-AAAAA----G-------TA--TATAC----ACTCAAAGTATATAACACCTCTTAATTCCATGACA--AT--TAGAAT---TTCCTACAAAA-AAAGAAAA----A-------------
gi|20 : -CAAG---AAT--CTAA-TT----AAA--------CATG----AT-T-------TTGAAAAGA-TAGCCAT-AAAAA----GTACGT--TA--TACAC----A------------------TCTT-ATTCCTTAACA--AT--TAGAATAGATGTCTACGTAA-ACAGAGAA----A-------------ATATtacaact
gi|21 : TA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----GC--A-TAaactatcgtgttaa
gi|22 : caaacaaaaaacagactcaacaacttgacgcaagcgtaaaaaagacagtgaaccatgtgttTTTAA--CA-AATC-ATG-TGTGGA-TTT-GG--AATA-AACG-AGTAGTTAGAG----GC--A-TAGTGT-GC-A-TTACA--GG-AAATTCTCTCGACAGACgttattattaaataaaaa
gi|23 : CTCTC-ACAGACAT-GT-----GGACAA-AGTGATGATTGACCAAGT-TCG-ATAAA-TG-TAA----ATGCTTT----AACC-ATC--------T-ATACG-TGTATGAAATATGAAA-GGTCGT-AAACTC-GGAATGAAgattatgcgttttcgatcggaagctctt
gi|24 : -A-CCAG---AAT--CACA-TT----AAA--------CATG----GTGT-------TTGGAAAGA-TAACCAT-GAAAA----G-------TA--TACAC----A------------------TCTT-ATTT-----CA--AT--TAGAATAAATCTCTATGAAA-AC
gi|25 : gtgattaaatgtatCAT-GT-----GGACAA-AGTGGGGTCAGCCCAAGC-TGT-AAAGA-TA-TAG----ATGCTTTTATTAATC-ATC--------T-AGATA-TGTATAAAATCTGAAAGGGTCAT-AAACTT-GGAATGAAt
gi|26 : T-T-------TTGAAAAGA-TAACCAT-AAAAAA---G-------TA--TATACCC--A------------------TTTT-ATTCCATGACA--AT--TCGAATAAATTTCTACGAAA-ACAGAGAA----A-------------ATATTA
gi|27 : CG---TTTT-TAT-TATTTTTGTT------T-T--AACATGTTCATA--AGAACTACTCACAA---ACACAC-------AACT------------A--CTTA--AAACAACCGACCGCCTCCTGGCAGCctgtcgtgtt
gi|28 : gt-AAATTCTC---ACAGACAT-AT-----TAACAA-AGTGATATCAGCCCACGC-TCT-ATAAA-TG-TAGATCTATGCTTT----AATG-ATC--------T-GTACG-TGTATAAA
gi|29 : AGT-GTGG-TTACAAGGA-AAATTCTCCC-AAAGACAT-GTCAACGGGACAA----------AGCCAAAGCTTCT-ATAAATTGTTAG----AT
gi|3 : TTTTAA--CA-AA-T-ATA-TGAGGA-TTT-GA--AATG-AACT-AG-ATTGAAAG----GC--A-TA--GT-GCGA-TTACAAGGA-AAATTCTCTC-ACAGACAT-GC-----AAACAA-AGTGATGTCAGCCCAAGC-TCT-ATAAA-TG-TAG----ATGTTTT----AATC-ATT--------T-ATACG-TGTATAACACATGAAAGGATCGT-AAACTC-TGAATGAAAAGCTA-----TTGGCTTC--A-TG----AC-------AAC---TGTTCAACAAATATACACAAAAT-----ACA------TCTCA---------ACTC--CACA-GCT-A-----TAT--------GAG--TCT-TCTTTG----TATGTTCAGCTGCTTTTATATTATCGTC-----GTTG-GTGGAAT-A-GGAAATC--TAGTAATATAT--CCCCTGTCT-C-A-CAAG---AAT--CCGT-TC----AAA--------TATG----A--T-------TTAAAAAGA-TAACCATAAAAAA----G-------TA--TATAC----ACCTCAAAGTATATACACCTCTT-ATTCCATGACA--AT--TAGAAT---TTCCTACAAAA-ACAGAAAA----
gi|30 : TTTTAA--CA-AA-A-ATA-TGTGGA-TTT-tacaacta
gi|31 : aataaatccaacaagaaaaaaaacggccgaaaaccatgtttcTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAG----AC--A-GATAGT-GTGA-TTACAAGGA-A----------------AT-GT-----GGACAA-AGT
gi|32 : -AAACTCTTTC-ACAGACCT-GT-----GGACCA-AGTGGGGTCAGCCCAAGC-TCT-A
gi|33 : ATCGCATAACCGACCGCCTCCTGGCGGCCAATAa
gi|34 : ATAGT-GCGA-TTACAAGTT-AAATTTTCTC-ACAGACAT-Gatga
gi|4 : ATGTCATCCCAAGC-TCT-ATAAA-TG-TAG----ATACATT----AATC-ATCCACAAATTT-ATACG-TGTATAAAATATGACAGGATCAT-AATCTC-GGAATGAAAAACT-------CAAAGTT--TTTGCTTTAC-------AACAACTGTTCAACAAATAAACAC-AAATTAAATACA------TCAAA---------------CAG------------------------CG--TCT-TCTTT---------------------TATATTATTGTC-----GTTG-GTTGAAA-A-GGAATTC--TCGTAATATAT--TCCCCATCT-C-A-CAAGATTAAT--CTAG-TT-----AA--------CATG----AT-T-------TTGAAAAGA-TAACCAT-AAAAAAATGG-------TATTTACAC----T------------------TGTT-ATTCCATTACAATAT--TAGAATAAATTTCTGTGAAATATATACAACTACA-------------GTGTGAAAGAAGATCGTCGTTT---ATCATGCCCAAACATCAACATGATAATCCCGCACTTCAAG-ATTTGGTTT---------AACGCGATTTGTTACGAAAGGA
gi|5 : gacctgtaaatTA-TGTGGA-TTT-GA--AATG-AACA-AG-ATTGAAAA----GC--A-TCTAGT-TCGA-TTACAAGGA-AAATTCTCTC-ACATACAT-AT-----GGACAA-AGTGATGTCAGCCCAAGC-TCTAAAAAA-TG-T-G----ATGCTTTTGA-AATC-ATC--------T-ATACG-TGTATAAAGTATGAAAGGATCGT-AAAC----------------A-----TTGGAGTT--ATTGCTTTACGGCAACTAAC---TGTTCGTGGAATATACAC-AAAT-----ACATGTACGTCAAA---------ACTT--CAGA-ACT-A-----CATGTATATAAGCA--TCT-TCTTTG----TATGGCCAGCTGCTTTGGCATTATTGTC-----GTTG-GATTAAT-A-GAAAATC--TCGTAATATAT--TTCCCGTCT-C-A-CAAG---AAT--
gi|6 : aaacaagaaacaaattgacgcaagcgtaaaaaaaaaaaaatcaaacaaaaccggcaaaccatttgtttc-A-CCAG---AAT--CAAA-TT----AAG--------AATG----GT-T-------TTGAAACGG-TAAACAT-AAAAA----G-------TA--TAATA----A------------------TCTT-ATTTCATGATA--AT--TAGAATAAATCTCTACGAAA-ACT----A----A-------------CTATT---------CTTTCTTTTAGATGATG-CCAAACACCAACATGATAATCCCGCACT------------------------AGCACGATTCGTTATGGGGGGGG--GGGGAACCC--AACAAAACTTTATGATT-TT---TT------TATTACCTCTATTTGTTGT--GAAAATATGT-TTGAAGATAATTTTTTGTTAATTAACGTTAATATCAT---T------C---TTA-TAAATTCTACG------T-TAT---TCTTT-TT-AA---TCT--AACATGTTCA
gi|7 : gttaaatgtatAGGGTCGT-AAATTC-GGAATGAAAAACCA-----TTGGAGCA--ATTGCTTTAC-------AAC---TGTTCAGCAAATATACAT-ACAT-----ACA------TCATACATTGTGTAAGTC--CAGA-ACT-G-----TAA--------ACG--TCT-TCTTAG----TATGGACAGCTGCT
gi|7 : TT--TCGTAATATATATTCCCTGTCT-C-A-TAAA---AAT--CTAC-TTT---AAA--------CATG----AT-T-------TTGAAA-GA-TAACCAT--AAAA----G-------TA--AACAC----A------------------TCTT-ATTCCATGAGA--AT--TAGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcgtaatatatattccctgtctcataaaaatctactttaaacatgattttgaaagataaccataaaagtaaacacatcttattccatgagaattaga
gi|8 : agggtcgtaaattcggaatgaaaaaccattggagcaattgctttacaactgttcagcaaatatacatacatacatcatacattgtgtaagtccagaactgtaaacgtcttcttagtatggacagctgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTAA--CATAA-ATATA-TGTGGA-TTT-GA--AATG-TTCAGAG-ATTGAAAG----GC--AATATAGT-GTAG-TTGCAAGGA-CAATTCTCTC-A-----------------GCAACAGTGATGTCGGCCCAGGT-T
gi|9 : attctttttaactttagtatcctttcgacctcgtatttagagagattacatgtaataatttggttagagcgaatataaatacacgtgaaacaaattgctcaagcgtaaaaaaagaaagaaaaaaaaaacgcgccgcaaaaaccatttgtttcCCGTCTGT-G-TGAG---AATGCCGAA-TT----AAA--------CATG----GT-T-------TTGAAAAGA-TAACCATAAAAAA----G-------TA--TAaa
gi|9 : atctccctgtCCAT-ATA--------------TA--TACATGTATA------------------TCTT-GTTCCATGACA--ATATTAGAATAAATCTCTACGAAA-TTAACTAT----C-------------GCGTTAAAGAAAATCTTTGTTTTAGATGACG-ACAAACACCAAC---ATAATTCTGCACTTCAAA-Ttttaaaatattatacatgtatatcttgttccatatatatacatgtatatcttgttccatgacaatattagaataaatctctacgaaattaactatcgcgttaaagaaaatctttgttttagatgacgacaaacaccaacataattctgcacttcaaat