lowQualScore : 111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 1 1 000000000 22222 11111 11 333333333 11 4444444 1 22222 888888888888888 99999999999999999999999 11 11 111111 111 111 77777777 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 44 1 1 1 777777 11 2222222222222222222222222 2 11 2222 222 1 1 333 11 3333333 1 22 22222222 22222 222222222222222222222222222222222222222222 1 222222 22 1 1 3333333 5555555555555555 1111 11 33333333333
lowQualScore : 3 3 3 6 111111111 8 00000 88 77777 88 0 33 000000000 88 6 6 0000000 6 0 2 55555 3 333333333333333 6 00000000000000000000000 6 88 77 33 777777 555 6 6 222 33333333 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 6 66 7 5 5 555555 88 55 0000000000000000000000000 3 2 0 2 3 3 00 6 99 9 8888 222 5 0 000 0 22 2 4 2222222 6 8 55 99999999 00000 0 55 2 3 555555555555555555555555555555555555555555 5 8 999999 3 33 88 2 5 0 0000000 33 1111111111111111 9999 22 22222222222 2
lowQualScore : . . . . ......... . ..... .. ..... .. . .. ......... .. . . ....... . . . ..... . ............... . ....................... . .. .. .. ...... ... . . ... ........ . .................................................................................... . . .. . . . ...... .. .. ......................... . . . . . . .. . .. . .... ... . . ... . .. . . ....... . . .. ........ ..... . .. . . .......................................... . . ...... . .. .. . . . ....... .. ................ .... .. ........... .
lowQualScore : 3 3 2 0 222222222 0 00000 88 66666 88 8 88 777777777 33 7 7 3333333 5 0 5 00000 7 333333333333333 7 33333333333333333333333 0 33 33 33 000000 777 7 0 000 00000000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 0 0 000000 00 00 5555555555555555555555555 0 5 0 5 0 0 00 0 00 0 3333 000 0 0 222 2 55 5 2 0000000 6 0 66 00000000 00000 2 00 5 2 000000000000000000000000000000000000000000 8 0 000000 5 88 88 8 0 4 2222222 66 4444444444444444 6666 00 88888888888 5
consensus : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACT------G-ATTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTT-AT-TTGT--ATGACCTATTTTGTATTTTTTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGNT---------------TCTGTAAATGAAACTAA-GTTTA--------TACA-----TTGTT--ACTATCGTTCTTGATTTCCTCTTATATGTTACT-CCTGACTTGTATACCCTNNNGGGCC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACACT-ATTT----------CCACCCCCTCTCTGAACCCTTG-CGAAATTCGACTCTCGCCTCCGTT--TATACGAATCGACNNCATGCATNTGTGNCA-GATTTTGTNCATCGAGTACGTCNCACAGTCNTGGGTGNTAAGCAATGANGGNCGATGAAAAGTAAAACANTTGGATTA----CTTA--ATCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCNATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGGTGTAGATG----------TA------------C-NTTTG-----------TTCCGTGCGAT-AT---A--TCTNTTGT--AAAAGT-AATGGTTAGAAATGCAAGNAAAAA--NCG--TAACCTAC---------TTT-CCTGCCGAATTTCAAGCGGAGATTAT--------CGANTCCCCCGG
Reference ( gi|1 ) : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAATCGCACTGTACATGTATTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTTCTCTTGATCTTGT--ATGACCTATTTTGTACCCCCCCCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAA--TTTA--------TACA---ATTCGTT--ACTATCGGTCTTAATTTTCTTTTATATGTTACT-CTTGACTTGTATGCCCTTAAGGGCCACTGAATTGGTTTAATAAAT----CTA---------AACTATAATACGTTTATATAATTTTAACAAACATTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCCCCCCCTCTCTGAATCCTTACCGAAAATCTACTCTCCCCTCCGTTACTTCGCGAATCGACCGCATACAT---TATCATGATTATGTCCA-CGAGTATTTCCCA-AATCCTGAGTGTTAAGCAATGAAGGATAATGAAAAATAAAGCGTTTGGATCA----CTTAAAATCAAGGTTTGCTGCGGAATTATTCTT--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTACACCATGCATATT-GTATCGAAGTGTTTGACCATATTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTTGG-----------TTCCGTGAGAT-AT---A--TCTTTTGT--AAAAGT-AATGGCTATAAATGCAAGAAAAAA--GCG--TGACCTAC---------CTT-CTGGCCGAAATTGAAGCGAGGATTTT--------CGACTCCCCCAG
gi|16 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCAC------TGTATTGA-AAAA-----CAGCAAAA-ACGCCTTCAGGAA-TCGAATGTAT
gi|15 : AGCCTACCT-CGA-TAGTTATTTCACAATTCAAAAACCGCACT--------ATTGA-AAAA-----CAGCAAAA-ACGCCG----GAA-TCGAATGAACTAGCACT--TCCAATTTgtg
gi|8 : CTGCCTACGAATTGCTATTTCACA-TTCAAAACCCGCATT--------ATTGA-AAAAACAGGCGGCAAAACACGCCT----GAAATC-AATGAAATAGCACT--TCCAATTCTTCTT-ATAT-GT--ATGACCTATTTTGTATCTTTTTCCCTCTGAAACGGATAAATGGAAGCCAAAGTGT-----Ag
gi|2 : TATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAC-ACGTCT----GAA-TCGAATGAATTAGCACT--TCCGATTTCTCTTGATCTTGT--ATGACCTATTTGGTATTTTGTTCCCTCTGTAACGGATTGATGG-AGCCAAAGTGT-----ATGCTTTTTTTCTAATCATGTCTGTAAATGAAACTAATGTTTACATATTGTTACA---TGTTGTT--ACTATCATTCTTGAT-----------TGTTACT-CCTGACTTGTATACCCTTATAGGCgacatataatttattactaaatcaatgttccgtaa
gi|3 : cGCACTGAGAAAA-----CAGCAAAA--CGC------GA---TGAATGA-TTAGCACTCTTCCAATTCCT--------TGTCAATGAC-TATTTT-TATTTCTC-------GTAACGGATA-ATGG-A-CCAAGGAGCTTCTAATCAT---------------TCT-TAAATGAAACTAA--TGTT--------TACATACGTTTGTTTTACTATCATTCT-GATTTCTTCTTATATAGTACTGC--GA-TTGTATACCCTATAGAACC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACACT-ATTT----------CCACCCCCTCTCTGAACCCTTG-CGAAATTCGACTCTCGCCTCCGTT--TATACGAA--GACCGCATGTATTTGTAACA-GATT---TCCATCGAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttcccaaatcctgagtggtaagcaatgaaggtcaatgaaaaataaaacatttggtttacttaaaatcaaggtttgctgccgaattattcgataatgcaatgttttcgtcactgacacagcgaaaatgtt
gi|13 : ACGGATAGATGG-AGCCAAAGTGT-----ATGTT---------------TTTGTAAATGAAACTAAGGTTTA--------CATA-----TTGTT--ACTATCGGGCTTGATTTTCTTTTATATGTTACT-CTTGACTTGTg
gi|10 : ATCAACATTATACATA--TGTC----TTTTGTACA-----TACGTCACACAGTCGTGGGTGTTAAACAATGACGAACGATGAAAAGTAAAACAGTTGGATTACATGCTT----TCTGCTTTTGCTGAGTAATTATTCT
gi|2 : caaaactacagtcATTTCCCA-AATCCTGAGTGGTAAGCAATGAAGGTCAATGAAAAATAAAACATTTGGTTTA----CTTAAAATCAAGGTTTGCTGCCGAATTATTCGA--TAATGCAATG-TTTTCGTCACTGACACAGCGAAAATGTTatgta
gi|4 : ctatttcacaattcaaaaaccgcactgtattgaaaaacagcaaacacgtctgaatcgaatgaattagcacttccgatttctcttgatcttgtatgacctatttggtattttgttccctctgtaacggattgatggagccaaagtgtatgctttttttctaatcatgtctgtaaatgaaactaatgtttacatattgttacatgttgttactatcattcttgattgttactcctgacttgtatacccttataggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATGA----CTTACTATCAAG-TTTGCTACGTAATCATTCCA--TATTGCAATG-TTTGT-TCACTAACAAACCAAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCACATTTACCT--TGAT-TAT-CG----------TA---------------TT-G-----------CTCTGTGTGAT-AT---
gi|5 : ATCAAGTTTTGCTGCATAATTATTCTAAATAATGTAAT--TTTTTGTCACCGACACAGCGAACATG----ACC---CAGTCT-GTG--GAAGTGTTGGACCACACTAAAAGGTTAATTGTTTAATCTAGGCA-----AACTGCTGATGTAGATG----------TA------------C-CTTAGCTATCGTATTGTTCCGTGCAAT-AT---A--TCTATTGT--AAAAGT-AATGGTTAGAAATGCAAG-AAAAA--CCG--TAAACTAC---------TTT-ACAATCGAATTTCAAGCGGAAATTATCAACAAAGCGACTCCCCCAgcaagacaatacgataacgctctttactgttgaatctcaagcagggagattattgactcccctggagttaaaagcgactaccccgttctttttagcgactccccccaaagtgacggttgtgcacgg
gi|17 : ctATCAAACTTTGCTGCGTAATTATTCTG--TGATGGAATGATTTTTGTTATGGACACGGCGAAaaataacggctagtgcacag
gi|6 : atctactGTGAAATTGTTCAATCCCGCAAATTTGTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ATCTGGTGGTGTAGATGTAGGTTTGGTTA------------CGTTTTG-----------TTCCGTGCGATGAT---GTTTCTTTTGTTAAAAAGTAAATGGTTAGAAATGCAAGCAAAAA--CGG--TAACCTAC---------TTT-CCTGCCGAATTTCAAGCGGAGATATT---------GAATCCCCCGGc
gi|7 : ggGAAATTGTTCAATCCCGCAAATT-GTG-CGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TAGGTTTTGGTTATC-GTTTG-----------TTCCGTGTGAT-GT---T--TCTTTTGTA-AAAAGT-AATGGTTAGAAATGCAAGCAAAAACTG-G--TAACCTAC---------TTT-CCTGCCGAATTTCAAGCGGAGATTAT--------TGAATCCCCCcattaaaagtgaccccccaccccccccgttccgtttagtgactccccc
gi|14 : ggAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCA-----tggcattaaaagtgaccccc
gi|11 : G-----------CTCCGTGCGAT-ATATTA--TCTGTTGT--AAAA-T-----GCAAGAAAAAAAAAAAAAAA--ACGGTTG-CGTAC---------TTTACT-GTCGAACTCCAAGCGGAGATTTC--------CTACCCCCCcatttaccttgattatcgtattgctctgtgtgat
gi|9 : ggttatcatattAAAGT-AATGATTAGAAATGCAAGAAAAAT--G-G--TAACCTATATAATTAAATTA-CT-GCCGAATTCCAAGCGGAGATTAT--------CGAaccccgaagtagcggcagtgc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TCTTAAAATTCTTCCCTTAAAATTTGTGTCATTCAGCCACTTTCACTTCTTTAAAAATGCAAGTATATATGAACCCCCCCCCCCCCCCCCAATCTTTAATCTTGCATGCAAGATTTATCTCCCT
Alignments
lowQualScore : 1 1 44444444 11111 1111 11 33333 11 1111 22222 666666666666666 333 555555555555555 11 333 2 2222 333333333 4444 22 2 2 8888888888 2 22 333333333 1 11 2 1111 2222222 22222222 11111 6666666666666666666666666666666666666666 1111111 11 1 111111111 22222222
lowQualScore : 0 0 0 11111111 66666 6 4444 6 11 2 77777 33 2 2 5555 3 3 8 00000 1 222222222222222 2 222 999999999999999 33 3 3 666666 3 2 333 555 0 2 4444 888888888 88 2 2222 77 0 0 7777777777 3 0 4 2 2 77 4 7 22 0 666666666 6 1 44 2 1 3 0 1 0 1 1 1 0 0 1 7777 8888888 1 99 8 1 3 2 6 33 44444444 88 66666 1 55 6666666666666666666666666666666666666666 5 1 5 8888888 1 55 5 5 0 2 999 5 5 777777777 4 77 00000000 1
lowQualScore : . . . ........ ..... . .... . .. . ..... .. . . .... . . . ..... . ............... . ... ............... .. . . ...... . . ... ... . . .... ......... .. . .... .. . . .......... . . . . . .. . . .. . ......... . . .. . . . . . . . . . . . . .... ....... . .. . . . . . .. ........ .. ..... . .. ........................................ . . . ....... . .. . . . . ... . . ......... . .. ........ .
lowQualScore : 0 0 8 77777777 77777 7 2222 7 00 5 55555 88 5 5 2222 2 2 0 00000 0 555555555555555 5 555 888888888888888 88 0 2 000000 2 5 000 000 0 5 5555 000000000 00 5 5555 55 0 0 5555555555 0 0 0 5 5 55 0 3 00 7 000000000 0 0 00 5 0 3 7 0 7 0 0 0 7 7 0 0000 9999999 5 22 0 4 3 2 7 55 22222222 55 77777 0 00 8888888888888888888888888888888888888888 7 7 7 0000000 0 88 7 7 7 1 777 7 7 444444444 3 99 77777777 0
consensus : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGT------ATTGAAAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATG-TTTA--------CACACG-TTGTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACAT-TGTA-CA-GATT-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGCGAT-ATN--T---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAACC-G-TAAC-CTAC-----T---TTACTGCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
Reference ( family-8126 ) : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTG-------ATTGAAAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTT-AT-TTGT--ATGACCTATTTTGTATTTTTTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGNT---------------TCTGTAAATGAAACTAA-G-TTTA--------TACA---TTGTT--ACTATCGTTCTTGATTTCCTCTTATATGTTACTCCTGACTTGTATACCCTNNNGGGCC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACACT-ATTT----------CCACCCCCTCTCTGAACCCTTGC-GAAATTCGACTCTCGCCTCCGTT--TATACGAATCGACNNCATGCATNTGTGNCA-GATTTTGTNCATCGAGTACGTCNCACAGTCNTGGGTGNTAAGCAATGANGGNCGATGAAAAGTAAAACANTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCNATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGGTGTAGATG----------TA------------C-NTT-----------TGTT-CCGTGCGAT-ATA--T---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGNAAAAANC-G-TAAC-CTAC-----T---TTCCTGCCGAATTTCAAGC--GGAGATTAT--------CGANTCCCCCGG
gi|1 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAATCGCACTGTACATGTATTGAAAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTTCTCTTGATCTTGT--ATGACCTATTTTGTACCCCCCCCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAA---TTTA--------TACAAT-TCGTT--ACTATCGGTCTTAATTTTCTTTTATATGTTACTCTTGACTTGTATGCCCTTAAGGGCCACTGAATTGGTTTAATAAAT----CTA---------AACTATAATACGTTTATATAATTTTAACAAACATTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCCCCCCCTCTCTGAATCCTTACCGAAAATCTACTCTCCCCTCCGTTACTTCGCGAATCGACCGCATACAT---TATCATGATTATGTCCA-CGAGTATTTCCCA-AATCCTGAGTGTTAAGCAATGAAGGATAATGAAAAATAAAGCGTTTGGATCA----CTTA--AAATCAAGGTTTGCTGCGGAATTATTCTT--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTACACCATGCATATT-GTATCGAAGTGTTTGACCATATTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------GGTT-CCGTGAGAT-ATA--T---CTTTTGT--AAAA-GT-AATGGCTATAAATGCAAGAAAAAAGC-G-TGAC-CTAC-----C---TTCTGGCCGAAATTGAAGC--GAGGATTTT--------CGACTCCCCCAG
gi|10 : ATCAACATTATACATATGT--C----TTTTGTACAT-----ACGTCACACAGTCGTGGGTGTTAAACAATGACGAACGATGAAAAGTAAAACAGTTGGATTACATGCTT------TCTGCTTTTGCTGAGTAATTATTCTA--T
gi|11 : caaaactacagtcT-----------TGCT-CCGTGCGAT-ATA--TTATCTGTTGT--AAAATGC-AA------GAAAAAAAAAAAAAAAAC-GGTTGC-GTAC-----T---TTACTGTCGAACTCCAAGC--GGAGATTTC--------CTACCCCCCgta
gi|13 : ggttatcataACGGATAGATGG-AGCCAAAGTGT-----ATGTT---------------TTTGTAAATGAAACTAA-GGTTTA--------CATA---TTGTT--ACTATCGGGCTTGATTTTCTTTTATATGTTACTCTTGACTTGTaccccgaagtagcggcagtgc
gi|14 : AAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCACATTTACCT--TGAT-TAT-CG----------TA----------------T-----------TGCT-CTGTGTGAT-
gi|15 : AGCCTACCT-CGA-TAGTTATTTCACAATTCAAAAACCGCACT--------ATTGAAAAA-----CAGCAAAA-ACGCCG----GAA-TCGAATGAACTAGCACT--TCCAATT
gi|16 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGT------ATTGAAAAA-----CAGCAAAA-ACGCCTTCAGGAA-TCGAATGTATtg
gi|17 : TA----CT----A--TCAAACTTTGCTGCGTAATTATTCTG--TGATGGAATGATTTTTGTTATGGACACGGCGAAgtg
gi|2 : atcTATTTCACAATTCAAAAACCGCACTGT------ATTGAAAAA-----CAGCAAAC-ACGTCT----GAA-TCGAATGAATTAGCACT--TCCGATTTCTCTTGATCTTGT--ATGACCTATTTGGTATTTTGTTCCCTCTGTAACGGATTGATGG-AGCCAAAGTGT-----ATGCTTTTTTTCTAATCATGTCTGTAAATGAAACTAATG-TTTACATATTGTTACATG-TTGTT--ACTATCATTCTTGAT-----------TGTTACTCCTGACTTGTATACCCTTATAGGCc
gi|2 : cTCCCA-AATCCTGAGTGGTAAGCAATGAAGGTCAATGAAAAATAAAACATTTGGTTTA----CTTA--AAATCAAGGTTTGCTGCCGAATTATTCGA--TAATGCAATG-TTTTCGTCACTGACACAGCGAAAATGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttcccaaatcctgagtggtaagcaatgaaggtcaatgaaaaataaaacatttggtttacttaaaatcaaggtttgctgccgaattattcgataatgcaatgttttcgtcactgacacagcgaaaatgtt
gi|3 : ctatttcacaattcaaaaaccgcactgtattgaaaaacagcaaacacgtctgaatcgaatgaattagcacttccgatttctcttgatcttgtatgacctatttggtattttgttccctctgtaacggattgatggagccaaagtgtatgctttttttctaatcatgtctgtaaatgaaactaatgtttacatattgttacatgttgttactatcattcttgattgttactcctgacttgtatacccttataggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattGCACTG-------A---GAAAA-----CAGCAAAA--CGC------GA---TGAATGA-TTAGCACTCTTCCAATTCCT--------TGTCAATGAC-TATTTT-TATTT------CTC-GTAACGGATA-ATGG-A-CCAAGGAGCTTCTAATCAT---------------TCT-TAAATGAAACTAATG-TTTA--------CATACGTTTGTTTTACTATCATTCT-GATTTCTTCTTATATAGTACTGC-GA-TTGTATACCCTATAGAACC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACACT-ATTT----------CCACCCCCTCTCTGAACCCTTGC-GAAATTCGACTCTCGCCTCCGTT--TATACGAA--GACCGCATGTATTTGTAACA-GATT---TCCATCGAGT
gi|4 : ATGA----CTTACTA--TCAAGTTT-GCTACGTAATCATTCCA--TATTGCAATG-TTTGT-TCACTAACAAACCAAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------C-----------------TGG-GCACATT----------TA------------C-CTT-----------GATTATCGT------ATT--G---CTCT-GT-------GT-GAT--------ATGCAAGACAATACG-A-TAACGCT-C-----T---TTACTGTTGAATCTCAAGCAGGGAGATTAT--------TGACTCCCCTGGg
gi|5 : --A--TCAAGTTTTGCTGCATAATTATTCTAAATAATGTAAT--TTTTTGTCACCGACACAGCGAACATG----ACCCAGT---CT-GTG--GAAGTGTTGGACCACACTAAAAGGTTAATTGTTTAATCTAGGCA-----AACTGCTGATGTAGATG----------TA------------C-CTTAGCTATCGTATTGTT-CCGTGCAAT-ATA--T---CTATTGT--AAAA-GT-AATGGTTAGAAATGCAAG-AAAAACC-G-TAAA-CTAC-----T---TTACAATCGAATTTCAAGC--GGAAATTATCAACAAAGCGACTCCCCCagttaaaagcgactaccccgttctttttagcgactccccccaaagtgacggttgtgcacgg
gi|6 : ctGTGAAATTGTTCAATCCCGCAAATTTGTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ATCTGGTGGTGTAGATGTAGGTTTGGTTA------------CGTTT-----------TGTT-CCGTGCGATGATGTTT---CTTTTGTTAAAAA-GTAAATGGTTAGAAATGCAAGCAAAAACG-G-TAAC-CTAC-----T---TTCCTGCCGAATTTCAAGC--GGAGA-TAT--------TGAATCCCCCGGaaaataacggctagtgcacag
gi|7 : ggGAAATTGTTCAATCCCGCAAATT-GTGC-GAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TAGGTTTTGGTTATC-GTT-----------TGTT-CCGTGTGAT-GTT--T---CTTTTGTA-AAAA-GT-AATGGTTAGAAATGCAAGCAAAAACTGG-TAAC-CTAC-----T---TTCCTGCCGAATTTCAAGC--GGAGATTAT--------TGAATCCCCCcattaaaagtgaccccccaccccccccgttccgtttagtgactccccc
gi|8 : ggCTGCCTACGAATTGCTATTTCACA-TTCAAAACCCGCATT--------ATTGAAAAAACAGGCGGCAAAACACGCCT----GAAATC-AATGAAATAGCACT--TCCAATTCTTCTT-AT-ATGT--ATGACCTATTTTGTATCTTTTTCCCTCTGAAACGGATAAATGGAAGCCAAAGTGT-----Atggcattaaaagtgaccccc
gi|9 : AAA-GT-AATGATTAGAAATGCAAG-AAAAATG-G-TAAC-CTATATAATTAAATTACTGCCGAATTCCAAGC--GGAGATTAT--------CGAgacatataatttattactaaatcaatgttccgtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCTTAAAATTCTTCCCTTAAAATTTGTGTCATTCAGCCACTTTCACTTCTTTAAAAATGCAAGTATATATGAACCCCCCCCCCCCCCCCCAATCTTTAATCTTGCATGCAAGATTTATCTCCCT
Alignments
lowQualScore : 1 1 111111 11111 1111 11 11 1111 22222 666666666666666 33333333 11 1 11 222 1 2222 333333333 2222 11 1 1 3333333333 1 11 11 1 22 1 44444444 11 1 1111 2222222 22222222 11111 6666666666666666666666666666666666666666 1111 111 11 11 111111111 22222222
lowQualScore : 0 0 0 88 999999 6 66666 6 4444 6 11 2 8 2 3 33 2 2 3333 3 3 8 00000 0 222222222222222 2 2 66666666 55 0 33 1 3 3 11 0 3 2 111 5 1 4444 888888888 22 1 4444 88 5 5 8888888888 1 5 1 1 1 88 1 88 3 0 00 3 55555555 44 2 3 0 0 7777 8888888 1 99 8 1 6 6 33 44444444 66666 55 2 2 4444444444444444444444444444444444444444 5 1111 1 111 1 55 5 5 0 0 4 22 5 777777777 4 5 77 00000000
lowQualScore : . . . .. ...... . ..... . .... . .. . . . . .. . . .... . . . ..... . ............... . . ........ .. . .. . . . .. . . . ... . . .... ......... .. . .... .. . . .......... . . . . . .. . .. . . .. . ........ .. . . . . .... ....... . .. . . . . .. ........ ..... .. . . ........................................ . .... . ... . .. . . . . . .. . ......... . . .. ........
lowQualScore : 0 0 8 22 222222 7 77777 7 2222 7 00 5 8 5 2 88 5 5 0000 2 2 0 00000 2 555555555555555 5 5 22222222 22 0 88 0 2 2 00 8 2 5 000 5 0 5555 000000000 00 0 5555 55 0 5 0000000000 0 0 0 0 0 00 0 00 3 7 77 3 00000000 00 5 3 7 7 0000 9999999 5 22 0 4 3 7 55 22222222 77777 00 2 5 5555555555555555555555555555555555555555 7 7777 0 777 0 88 7 7 7 3 9 33 7 444444444 9 7 99 77777777
consensus : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAACG-GTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
Reference ( family-8126 ) : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTGT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAACC-GTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
gi|1 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAATCGCACTGTACATGTATTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTTCTCTTGATCTTGT--ATGACCTATTTTGTACCCCCCCCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAAT--TTAT--------ACAATTC-GTT--ACTATCGGTCTTAATTTTCTTTTATATGTTACTCTTGACTTGTATGCCCTTAAGGGCCACTGAATTGGTTTAATAAAT----CTA---------AACTATAATACGTTTATATAATTTTAACAAACATTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCCCCCCCTCTCTGAATCCTTACCGAAAATCTACTCTCCCCTCCGTTACTTCGCGAATCGACCGCATACA-TTAT--CATGAT-----TATGTCCA-CGAGTATTTCCCA-AATCCTGAGTGTTAAGCAATGAAGGATAATGAAAAATAAAGCGTTTGGATCA----CTTA--AAATCAAGGTTTGCTGCGGAATTATTCTT--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTACACCATGCATATT-GTATCGAAGTGTTTGACCATATTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------GGTT-CCGTGA---GATATAT---CTTTTGT--AAAA-GT-AATGGCTATAAATGCAAGAAAAAAGC-GTGAC-CTAC-----C---TT-CTGGCCGAAATTGAAGC--GAGGATTTT--------CGACTCCCCCAG
gi|10 : ACA-TTAT-ACA-TATGTCTTT-TGTACAT-----ACGTCACACAGTCGTGGGTGTTAAACAATGACGAACGATGAAAAGTAAAACAGTTGGATTACATGCTT------TCTGCTTTTGCTGAGTAATTATTCTA--T
gi|11 : caaaactacagtcatcaT-----------TGCT-CCGTGC---GATATATTATCTGTTGT--AAAATGC-AA--GAAAAAAA---AAAAAAAAACG-GTTGC-GTAC-----T---TTACT-GTCGAACTCCAAGC--GGAGATTTC--------CTACCCCCCgta
gi|13 : ggttatcataACGGATAGATGG-AGCCAAAGTGT-----ATGTT---------------TTTGTAAATGAAACTAAGGTTTAC--------ATA--TT-GTT--ACTATCGGGCTTGATTTTCTTTTATATGTTACTCTTGACTTGTaccccgaagtagcggcagtgc
gi|14 : AAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCACATTTACCT--TGAT-TAT-CG----------TA----------------T-----------TGCT-CTGTGT---GAT
gi|15 : AGCCTACCT-CGA-TAGTTATTTCACAATTCAAAAACCGCACT--A------TTGA-AAAA-----CAGCAAAA-ACGCCG----GAA-TCGAATGAACTAGCACT--TCCAATT
gi|16 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCTTCAGGAA-TCGAATGTATtg
gi|17 : TA----CT----A--TCAAACTTTGCTGCGTAATTATTCTG--TGATGGAATGATTTTTGTTATGGACACGGCGAAgtg
gi|2 : atcTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAC-ACGTCT----GAA-TCGAATGAATTAGCACT--TCCGATTTCTCTTGATCTTGT--ATGACCTATTTGGTATTTTGTTCCCTCTGTAACGGATTGATGG-AGCCAAAGTGT-----ATGCTTTTTTTCTAATCATGTCTGTAAATGAAACTAATGTTTACATATTGTTACATGTT-GTT--ACTATCATTCTTGAT-----------TGTTACTCCTGACTTGTATACCCTTATAGGCc
gi|2 : cTCCCA-AATCCTGAGTGGTAAGCAATGAAGGTCAATGAAAAATAAAACATTTGGTTTA----CTTA--AAATCAAGGTTTGCTGCCGAATTATTCGA--TAATGCAATG-TTTTCGTCACTGACACAGCGAAAATGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttcccaaatcctgagtggtaagcaatgaaggtcaatgaaaaataaaacatttggtttacttaaaatcaaggtttgctgccgaattattcgataatgcaatgttttcgtcactgacacagcgaaaatgtt
gi|3 : ctatttcacaattcaaaaaccgcactgtattgaaaaacagcaaacacgtctgaatcgaatgaattagcacttccgatttctcttgatcttgtatgacctatttggtattttgttccctctgtaacggattgatggagccaaagtgtatgctttttttctaatcatgtctgtaaatgaaactaatgtttacatattgttacatgttgttactatcattcttgattgttactcctgacttgtatacccttataggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattGCA------CTGAGAAAA-----CAGCAAAA--CGC------GA---TGAATGA-TTAGCACTCTTCCAATTCCT--------TGTCAATGAC-TATTTT-TATTT------CTC-GTAACGGATA-ATGG-A-CCAAGGAGCTTCTAATCAT---------------TCT-TAAATGAAACTAATGTTTAC--------ATACGTTTGTTTTACTATCATTCT-GATTTCTTCTTATATAGTACTGC-GA-TTGTATACCCTATAGAACC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACAC-TATTT----------CCACCCCCTCTCTGAACCCTTG-CGAAATTCGACTCTCGCCTCCGTT--TATACGAA--GACCGCATGTATTTGTAACA-GAT-----T---TCCATCGAGT
gi|4 : ATGA----CTTACTA--TCAAGTTT-GCTACGTAATCATTCCA--TATTGCAATG-TTTGT-TCACTAACAAACCAAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGC------AC------------ATT----------TA------------C-CTT-----------GATTATCG--------TATTG---CTC-TGT-------GT-GAT--------ATGCAAGACAATACG-ATAACGCT-C-----T---TTACT-GTTGAATCTCAAGCAGGGAGATTAT--------TGACTCCCCTGGg
gi|5 : --A--TCAAGTTTTGCTGCATAATTATTCTAAATAATGTAAT--TTTTTGTCACCGACACAGCGAACATGACCCAGTC-------T-GTG--GAAGTGTTGGACCACACTAAAAGGTTAATTGTTTAATCTAGGCA-----AACTGCTGATGTAGATG----------TA------------C-CTTAGCTATCGTATTGTT-CCGTGC---AATATAT---CTATTGT--AAAA-GT-AATGGTTAGAAATGCAAG-AAAAACC-GTAAA-CTAC-----T---TTACA-ATCGAATTTCAAGC--GGAAATTATCAACAAAGCGACTCCCCCagttaaaagcgactaccccgttctttttagcgactccccccaaagtgacggttgtgcacgg
gi|6 : ctGTGAAATTGTTCAATCCCGCAAATTTGTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ATCTGGTGGTGTAGATGTAGGTTTGGTTA------------CGTTT-----------TGTT-CCGTGCGATGATGTTT---CTTTTGTTAAAAA-GTAAATGGTTAGAAATGCAAGCAAAAACG-GTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGA-TAT--------TGAATCCCCCGGaaaataacggctagtgcacag
gi|7 : ggGAAATTGTTCAATCCCGCAAATT-GTGC-GAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TAGGTTTTGGTTATC-GTT-----------TGTT-CCGTGT---GATGTTT---CTTTTGTA-AAAA-GT-AATGGTTAGAAATGCAAGCAAAAACTGGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGATTAT--------TGAATCCCCCcattaaaagtgaccccccaccccccccgttccgtttagtgactccccc
gi|8 : ggCTGCCTACGAATTGCTATTTCACA-TTCAAAACCCGCATT--A------TTGA-AAAAACAGGCGGCAAAACACGCCT----GAAATC-AATGAAATAGCACT--TCCAATTCTTCTT-ATAT-GT--ATGACCTATTTTGTATCTTTTTCCCTCTGAAACGGATAAATGGAAGCCAAAGTGT-----Atggcattaaaagtgaccccc
gi|9 : AAA-GT-AATGATTAGAAATGCAAGAAAAA-TG-GTAAC-CTATATAATTAAATTACT-GCCGAATTCCAAGC--GGAGATTAT--------CGAgacatataatttattactaaatcaatgttccgtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCTTAAAATTCTTCCCTTAAAATTTGTGTCATTCAGCCACTTTCACTTCTTTAAAAATGCAAGTATATATGAACCCCCCCCCCCCCCCCCAATCTTTAATCTTGCATGCAAGATTTATCTCCCT
Alignments
lowQualScore : 1 1 111111 11111 1111 11 11 1111 22222 666666666666666 33333333 11 1 11 222 1 2222 333333333 2222 11 1 1 3333333333 1 11 11 1 22 1 44444444 11 1 1111 2222222 22222222 1111111 6666666666666666666666666666666666666666 1111 111 11 111111111 22222222
lowQualScore : 0 0 0 88 999999 6 66666 6 4444 6 11 2 8 2 3 33 2 2 3333 3 3 8 00000 0 222222222222222 2 2 66666666 55 0 33 1 3 3 11 0 3 2 111 5 1 4444 888888888 22 1 4444 88 5 5 8888888888 1 5 1 1 1 88 1 88 3 00 3 55555555 44 2 3 0 0 7777 8888888 1 99 8 1 6 6 33 44444444 0 6666666 55 2 4444444444444444444444444444444444444444 5 1111 1 111 1 55 5 5 0 0 4 5 5 777777777 4 5 77 00000000
lowQualScore : . . . .. ...... . ..... . .... . .. . . . . .. . . .... . . . ..... . ............... . . ........ .. . .. . . . .. . . . ... . . .... ......... .. . .... .. . . .......... . . . . . .. . .. . .. . ........ .. . . . . .... ....... . .. . . . . .. ........ . ....... .. . ........................................ . .... . ... . .. . . . . . . . ......... . . .. ........
lowQualScore : 0 0 8 22 222222 7 77777 7 2222 7 00 5 8 5 2 88 5 5 0000 2 2 0 00000 2 555555555555555 5 5 22222222 22 0 88 0 2 2 00 8 2 5 000 5 0 5555 000000000 00 0 5555 55 0 5 0000000000 0 0 0 0 0 00 0 00 3 77 3 00000000 00 5 3 7 7 0000 9999999 5 22 0 4 3 7 55 22222222 7 8888888 00 5 5555555555555555555555555555555555555555 7 7777 0 777 0 88 7 7 7 3 9 7 7 444444444 9 7 99 77777777
consensus : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
Reference ( family-8126 ) : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
gi|1 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAATCGCACTGTACATGTATTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTTCTCTTGATCTTGT--ATGACCTATTTTGTACCCCCCCCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAAT--TTAT--------ACAATTC-GTT--ACTATCGGTCTTAATTTTCTTTTATATGTTACTCTTGACTTGTATGCCCTTAAGGGCCACTGAATTGGTTTAATAAAT----CTA---------AACTATAATACGTTTATATAATTTTAACAAACATTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCCCCCCCTCTCTGAATCCTTACCGAAAATCTACTCTCCCCTCCGTTACTTCGCGAATCGACCGCATACA-TTAT--CATGAT-----TATGTCCA-CGAGTATTTCCCA-AATCCTGAGTGTTAAGCAATGAAGGATAATGAAAAATAAAGCGTTTGGATCA----CTTA--AAATCAAGGTTTGCTGCGGAATTATTCTT--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTACACCATGCATATT-GTATCGAAGTGTTTGACCATATTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------GGTT-CCGTGA---GATATAT---CTTTTGT--AAAA-GT-AATGGCTATAAATGCAAGAAAAAAG-CGTGAC-CTAC-----C---TT-CTGGCCGAAATTGAAGC--GAGGATTTT--------CGACTCCCCCAG
gi|10 : ACA-TTAT-ACA-TATGTCTTT-TGTACAT-----ACGTCACACAGTCGTGGGTGTTAAACAATGACGAACGATGAAAAGTAAAACAGTTGGATTACATGCTT------TCTGCTTTTGCTGAGTAATTATTCTA--T
gi|11 : caaaactacagtcatcaT-----------TGCT-CCGTGC---GATATATTATCTGTTGT--AAAATGC-AA--GAAAAAAA---AAAAAAAAAC-GGTTGC-GTAC-----T---TTACT-GTCGAACTCCAAGC--GGAGATTTC--------CTACCCCCCgta
gi|13 : ggttatcataACGGATAGATGG-AGCCAAAGTGT-----ATGTT---------------TTTGTAAATGAAACTAAGGTTTAC--------ATA--TT-GTT--ACTATCGGGCTTGATTTTCTTTTATATGTTACTCTTGACTTGTaccccgaagtagcggcagtgc
gi|14 : AAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCACATTTACCT--TGAT-TAT-CG----------TA----------------T-----------TGCT-CTGTGT---GAT
gi|15 : AGCCTACCT-CGA-TAGTTATTTCACAATTCAAAAACCGCACT--A------TTGA-AAAA-----CAGCAAAA-ACGCCG----GAA-TCGAATGAACTAGCACT--TCCAATT
gi|16 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCTTCAGGAA-TCGAATGTATtg
gi|17 : TA----CT----A--TCAAACTTTGCTGCGTAATTATTCTG--TGATGGAATGATTTTTGTTATGGACACGGCGAAgtg
gi|2 : atcTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAC-ACGTCT----GAA-TCGAATGAATTAGCACT--TCCGATTTCTCTTGATCTTGT--ATGACCTATTTGGTATTTTGTTCCCTCTGTAACGGATTGATGG-AGCCAAAGTGT-----ATGCTTTTTTTCTAATCATGTCTGTAAATGAAACTAATGTTTACATATTGTTACATGTT-GTT--ACTATCATTCTTGAT-----------TGTTACTCCTGACTTGTATACCCTTATAGGCc
gi|2 : cTCCCA-AATCCTGAGTGGTAAGCAATGAAGGTCAATGAAAAATAAAACATTTGGTTTA----CTTA--AAATCAAGGTTTGCTGCCGAATTATTCGA--TAATGCAATG-TTTTCGTCACTGACACAGCGAAAATGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttcccaaatcctgagtggtaagcaatgaaggtcaatgaaaaataaaacatttggtttacttaaaatcaaggtttgctgccgaattattcgataatgcaatgttttcgtcactgacacagcgaaaatgtt
gi|3 : ctatttcacaattcaaaaaccgcactgtattgaaaaacagcaaacacgtctgaatcgaatgaattagcacttccgatttctcttgatcttgtatgacctatttggtattttgttccctctgtaacggattgatggagccaaagtgtatgctttttttctaatcatgtctgtaaatgaaactaatgtttacatattgttacatgttgttactatcattcttgattgttactcctgacttgtatacccttataggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattGCA------CTGAGAAAA-----CAGCAAAA--CGC------GA---TGAATGA-TTAGCACTCTTCCAATTCCT--------TGTCAATGAC-TATTTT-TATTT------CTC-GTAACGGATA-ATGG-A-CCAAGGAGCTTCTAATCAT---------------TCT-TAAATGAAACTAATGTTTAC--------ATACGTTTGTTTTACTATCATTCT-GATTTCTTCTTATATAGTACTGC-GA-TTGTATACCCTATAGAACC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACAC-TATTT----------CCACCCCCTCTCTGAACCCTTG-CGAAATTCGACTCTCGCCTCCGTT--TATACGAA--GACCGCATGTATTTGTAACA-GAT-----T---TCCATCGAGT
gi|4 : ATGA----CTTACTA--TCAAGTTT-GCTACGTAATCATTCCA--TATTGCAATG-TTTGT-TCACTAACAAACCAAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCA-------C-----------ATT----------TA------------C-CTT-----------GATTATCGT--------ATTG---CTCT-GT-------GT-GAT--------ATGCAAGACAATAC-GATAACGCT-C-----T---TTACT-GTTGAATCTCAAGCAGGGAGATTAT--------TGACTCCCCTGGg
gi|5 : --A--TCAAGTTTTGCTGCATAATTATTCTAAATAATGTAAT--TTTTTGTCACCGACACAGCGAACATGACCCAGTC-------T-GTG--GAAGTGTTGGACCACACTAAAAGGTTAATTGTTTAATCTAGGCA-----AACTGCTGATGTAGATG----------TA------------C-CTTAGCTATCGTATTGTT-CCGTGC---AATATAT---CTATTGT--AAAA-GT-AATGGTTAGAAATGCAAG-AAAAAC-CGTAAA-CTAC-----T---TTACA-ATCGAATTTCAAGC--GGAAATTATCAACAAAGCGACTCCCCCagttaaaagcgactaccccgttctttttagcgactccccccaaagtgacggttgtgcacgg
gi|6 : ctGTGAAATTGTTCAATCCCGCAAATTTGTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ATCTGGTGGTGTAGATGTAGGTTTGGTTA------------CGTTT-----------TGTT-CCGTGCGATGATGTTT---CTTTTGTTAAAAA-GTAAATGGTTAGAAATGCAAGCAAAAAC-GGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGA-TAT--------TGAATCCCCCGGaaaataacggctagtgcacag
gi|7 : ggGAAATTGTTCAATCCCGCAAATT-GTGC-GAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TAGGTTTTGGTTATC-GTT-----------TGTT-CCGTGT---GATGTTT---CTTTTGTA-AAAA-GT-AATGGTTAGAAATGCAAGCAAAAACTGGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGATTAT--------TGAATCCCCCcattaaaagtgaccccccaccccccccgttccgtttagtgactccccc
gi|8 : ggCTGCCTACGAATTGCTATTTCACA-TTCAAAACCCGCATT--A------TTGA-AAAAACAGGCGGCAAAACACGCCT----GAAATC-AATGAAATAGCACT--TCCAATTCTTCTT-ATAT-GT--ATGACCTATTTTGTATCTTTTTCCCTCTGAAACGGATAAATGGAAGCCAAAGTGT-----Atggcattaaaagtgaccccc
gi|9 : AAA-GT-AATGATTAGAAATGCAAGAAAAA-T-GGTAAC-CTATATAATTAAATTACT-GCCGAATTCCAAGC--GGAGATTAT--------CGAgacatataatttattactaaatcaatgttccgtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCTTAAAATTCTTCCCTTAAAATTTGTGTCATTCAGCCACTTTCACTTCTTTAAAAATGCAAGTATATATGAACCCCCCCCCCCCCCCCCAATCTTTAATCTTGCATGCAAGATTTATCTCCCT
Alignments
lowQualScore : 1 1 111111 11111 1111 11 11 1111 22222 666666666666666 33333333 11 1 11 222 1 2222 333333333 2222 11 1 1 3333333333 1 11 11 1 22 1 44444444 11 1 1111 2222222 22222222 1111111 6666666666666666666666666666666666666666 1111 111 11 111111111 22222222
lowQualScore : 0 0 0 88 999999 6 66666 6 4444 6 11 2 8 2 3 33 2 2 3333 3 3 8 00000 0 222222222222222 2 2 66666666 55 0 33 1 3 3 11 0 3 2 111 5 1 4444 888888888 22 1 4444 88 5 5 8888888888 1 5 1 1 1 88 1 88 3 00 3 55555555 44 2 3 0 0 7777 8888888 1 99 8 1 6 6 33 44444444 0 6666666 55 2 4444444444444444444444444444444444444444 5 1111 1 111 1 55 5 5 0 0 4 5 5 777777777 4 5 77 00000000
lowQualScore : . . . .. ...... . ..... . .... . .. . . . . .. . . .... . . . ..... . ............... . . ........ .. . .. . . . .. . . . ... . . .... ......... .. . .... .. . . .......... . . . . . .. . .. . .. . ........ .. . . . . .... ....... . .. . . . . .. ........ . ....... .. . ........................................ . .... . ... . .. . . . . . . . ......... . . .. ........
lowQualScore : 0 0 8 22 222222 7 77777 7 2222 7 00 5 8 5 2 88 5 5 0000 2 2 0 00000 2 555555555555555 5 5 22222222 22 0 88 0 2 2 00 8 2 5 000 5 0 5555 000000000 00 0 5555 55 0 5 0000000000 0 0 0 0 0 00 0 00 3 77 3 00000000 00 5 3 7 7 0000 9999999 5 22 0 4 3 7 55 22222222 7 8888888 00 5 5555555555555555555555555555555555555555 7 7777 0 777 0 88 7 7 7 3 9 7 7 444444444 9 7 99 77777777
consensus : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
Reference ( family-8126 ) : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
gi|1 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAATCGCACTGTACATGTATTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTTCTCTTGATCTTGT--ATGACCTATTTTGTACCCCCCCCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAAT--TTAT--------ACAATTC-GTT--ACTATCGGTCTTAATTTTCTTTTATATGTTACTCTTGACTTGTATGCCCTTAAGGGCCACTGAATTGGTTTAATAAAT----CTA---------AACTATAATACGTTTATATAATTTTAACAAACATTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCCCCCCCTCTCTGAATCCTTACCGAAAATCTACTCTCCCCTCCGTTACTTCGCGAATCGACCGCATACA-TTAT--CATGAT-----TATGTCCA-CGAGTATTTCCCA-AATCCTGAGTGTTAAGCAATGAAGGATAATGAAAAATAAAGCGTTTGGATCA----CTTA--AAATCAAGGTTTGCTGCGGAATTATTCTT--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTACACCATGCATATT-GTATCGAAGTGTTTGACCATATTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------GGTT-CCGTGA---GATATAT---CTTTTGT--AAAA-GT-AATGGCTATAAATGCAAGAAAAAAG-CGTGAC-CTAC-----C---TT-CTGGCCGAAATTGAAGC--GAGGATTTT--------CGACTCCCCCAG
gi|10 : ACA-TTAT-ACA-TATGTCTTT-TGTACAT-----ACGTCACACAGTCGTGGGTGTTAAACAATGACGAACGATGAAAAGTAAAACAGTTGGATTACATGCTT------TCTGCTTTTGCTGAGTAATTATTCTA--T
gi|11 : caaaactacagtcatcaT-----------TGCT-CCGTGC---GATATATTATCTGTTGT--AAAATGC-AA--GAAAAAAA---AAAAAAAAAC-GGTTGC-GTAC-----T---TTACT-GTCGAACTCCAAGC--GGAGATTTC--------CTACCCCCCgta
gi|13 : ggttatcataACGGATAGATGG-AGCCAAAGTGT-----ATGTT---------------TTTGTAAATGAAACTAAGGTTTAC--------ATA--TT-GTT--ACTATCGGGCTTGATTTTCTTTTATATGTTACTCTTGACTTGTaccccgaagtagcggcagtgc
gi|14 : AAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCACATTTACCT--TGAT-TAT-CG----------TA----------------T-----------TGCT-CTGTGT---GAT
gi|15 : AGCCTACCT-CGA-TAGTTATTTCACAATTCAAAAACCGCACT--A------TTGA-AAAA-----CAGCAAAA-ACGCCG----GAA-TCGAATGAACTAGCACT--TCCAATT
gi|16 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCTTCAGGAA-TCGAATGTATtg
gi|17 : TA----CT----A--TCAAACTTTGCTGCGTAATTATTCTG--TGATGGAATGATTTTTGTTATGGACACGGCGAAgtg
gi|2 : atcTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAC-ACGTCT----GAA-TCGAATGAATTAGCACT--TCCGATTTCTCTTGATCTTGT--ATGACCTATTTGGTATTTTGTTCCCTCTGTAACGGATTGATGG-AGCCAAAGTGT-----ATGCTTTTTTTCTAATCATGTCTGTAAATGAAACTAATGTTTACATATTGTTACATGTT-GTT--ACTATCATTCTTGAT-----------TGTTACTCCTGACTTGTATACCCTTATAGGCc
gi|2 : cTCCCA-AATCCTGAGTGGTAAGCAATGAAGGTCAATGAAAAATAAAACATTTGGTTTA----CTTA--AAATCAAGGTTTGCTGCCGAATTATTCGA--TAATGCAATG-TTTTCGTCACTGACACAGCGAAAATGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttcccaaatcctgagtggtaagcaatgaaggtcaatgaaaaataaaacatttggtttacttaaaatcaaggtttgctgccgaattattcgataatgcaatgttttcgtcactgacacagcgaaaatgtt
gi|3 : ctatttcacaattcaaaaaccgcactgtattgaaaaacagcaaacacgtctgaatcgaatgaattagcacttccgatttctcttgatcttgtatgacctatttggtattttgttccctctgtaacggattgatggagccaaagtgtatgctttttttctaatcatgtctgtaaatgaaactaatgtttacatattgttacatgttgttactatcattcttgattgttactcctgacttgtatacccttataggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattGCA------CTGAGAAAA-----CAGCAAAA--CGC------GA---TGAATGA-TTAGCACTCTTCCAATTCCT--------TGTCAATGAC-TATTTT-TATTT------CTC-GTAACGGATA-ATGG-A-CCAAGGAGCTTCTAATCAT---------------TCT-TAAATGAAACTAATGTTTAC--------ATACGTTTGTTTTACTATCATTCT-GATTTCTTCTTATATAGTACTGC-GA-TTGTATACCCTATAGAACC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACAC-TATTT----------CCACCCCCTCTCTGAACCCTTG-CGAAATTCGACTCTCGCCTCCGTT--TATACGAA--GACCGCATGTATTTGTAACA-GAT-----T---TCCATCGAGT
gi|4 : ATGA----CTTACTA--TCAAGTTT-GCTACGTAATCATTCCA--TATTGCAATG-TTTGT-TCACTAACAAACCAAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGCA-------C-----------ATT----------TA------------C-CTT-----------GATTATCGT--------ATTG---CTCT-GT-------GT-GAT--------ATGCAAGACAATAC-GATAACGCT-C-----T---TTACT-GTTGAATCTCAAGCAGGGAGATTAT--------TGACTCCCCTGGg
gi|5 : --A--TCAAGTTTTGCTGCATAATTATTCTAAATAATGTAAT--TTTTTGTCACCGACACAGCGAACATGACCCAGTC-------T-GTG--GAAGTGTTGGACCACACTAAAAGGTTAATTGTTTAATCTAGGCA-----AACTGCTGATGTAGATG----------TA------------C-CTTAGCTATCGTATTGTT-CCGTGC---AATATAT---CTATTGT--AAAA-GT-AATGGTTAGAAATGCAAG-AAAAAC-CGTAAA-CTAC-----T---TTACA-ATCGAATTTCAAGC--GGAAATTATCAACAAAGCGACTCCCCCagttaaaagcgactaccccgttctttttagcgactccccccaaagtgacggttgtgcacgg
gi|6 : ctGTGAAATTGTTCAATCCCGCAAATTTGTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ATCTGGTGGTGTAGATGTAGGTTTGGTTA------------CGTTT-----------TGTT-CCGTGCGATGATGTTT---CTTTTGTTAAAAA-GTAAATGGTTAGAAATGCAAGCAAAAAC-GGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGA-TAT--------TGAATCCCCCGGaaaataacggctagtgcacag
gi|7 : ggGAAATTGTTCAATCCCGCAAATT-GTGC-GAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCA-----ACCTGGTGGTGTAGATG----------TAGGTTTTGGTTATC-GTT-----------TGTT-CCGTGT---GATGTTT---CTTTTGTA-AAAA-GT-AATGGTTAGAAATGCAAGCAAAAACTGGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGATTAT--------TGAATCCCCCcattaaaagtgaccccccaccccccccgttccgtttagtgactccccc
gi|8 : ggCTGCCTACGAATTGCTATTTCACA-TTCAAAACCCGCATT--A------TTGA-AAAAACAGGCGGCAAAACACGCCT----GAAATC-AATGAAATAGCACT--TCCAATTCTTCTT-ATAT-GT--ATGACCTATTTTGTATCTTTTTCCCTCTGAAACGGATAAATGGAAGCCAAAGTGT-----Atggcattaaaagtgaccccc
gi|9 : AAA-GT-AATGATTAGAAATGCAAGAAAAA-T-GGTAAC-CTATATAATTAAATTACT-GCCGAATTCCAAGC--GGAGATTAT--------CGAgacatataatttattactaaatcaatgttccgtaa
blockSeqs : A A GT . G ACAGG C TCAG A CT C G C T CA C G TGTT T G A TTCTA TTTTTTCTAATCATG G G ATATTGTT TG T TT G T T TC T C . . C TATT TTCCAATAC AT C . . . . . A . T G G . A . T AA . GTCTTTT TC G C CATG TAAAA T AA A G T T CC TGTTTAAT CATTTAC GC G TAGGTTTTGGTTATCGTT A CGAT A TAT G TA T A A T G ATAATTAAA A . AG CAACAAAG
blockSeqs : . . GT . . . . . . . C . A T . C G TTTT T G . . . G G . CG . . T T T CT T C . A . T T . . TACTA C . . T T . CC . AA GG G TACCTTAGCTATCGTAT . C T . C A . . A . . T A . . .
blockSeqs : . . GC . . . . . . . . . . . . . . . . A . . . . G . . . . T . . . . . . T G . . T C . CC . AT GG G TAGGTTTGGTTACGTTT . T A . A . . . C . . T A . . .
blockSeqs : . . . . . . . . . . . . A T . . C C . C . AC . . TACCTT . C T . T . . . C . . T C . . .
blockSeqs : . . . . . . . T . . . . . . . . TAT . T T . T . . . A . . T C . . .
blockSeqs : . . . . . . . T A . . .
blockSeqCons : ****** TA***** TACCTGGCTACGTT**************************
originalCons : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA--A--TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATG----------TA------------C-CTT-----------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
finalCons : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTTA-----TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCA-----ACCTGGTGATGTAGATGTACCTGGCTACGTT--------------------------TGTT-CCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCTTAAAATTCTTCCCTTAAAATTTGTGTCATTCAGCCACTTTCACTTCTTTAAAAATGCAAGTATATATGAACCCCCCCCCCCCCCCCCAATCTTTAATCTTGCATGCAAGATTTATCTCCCT
Alignments
lowQualScore : 1 1 111111 11111 1111 11 11 1111 22222 666666666666666 33333333 11 1 11 222 1 2222 333333333 2222 11 1 1 3333333333 1 11 11 1 22 1 44444444 11 1 1111 22222222 22222222222 5555555555555555555 111 111 11 111111111 22222222
lowQualScore : 0 0 0 88 999999 6 66666 6 4444 6 11 2 8 2 3 33 2 2 3333 3 3 8 00000 0 222222222222222 2 2 66666666 55 0 33 1 3 3 11 0 3 2 111 5 1 4444 888888888 22 1 4444 88 5 5 8888888888 1 5 1 1 1 88 1 88 3 00 3 55555555 44 2 3 0 0 7777 99999999 1 99 8 1 6 6 33 66666666666 3 1 555 4444444444444444444 000 1 111 1 55 5 5 0 0 4 5 5 777777777 4 5 77 00000000
lowQualScore : . . . .. ...... . ..... . .... . .. . . . . .. . . .... . . . ..... . ............... . . ........ .. . .. . . . .. . . . ... . . .... ......... .. . .... .. . . .......... . . . . . .. . .. . .. . ........ .. . . . . .... ........ . .. . . . . .. ........... . . ... ................... ... . ... . .. . . . . . . . ......... . . .. ........
lowQualScore : 0 0 8 22 222222 7 77777 7 2222 7 00 5 8 5 2 88 5 5 0000 2 2 0 00000 2 555555555555555 5 5 22222222 22 0 88 0 2 2 00 8 2 5 000 5 0 5555 000000000 00 0 5555 55 0 5 0000000000 0 0 0 0 0 00 0 00 3 77 3 00000000 00 5 3 7 7 0000 88888888 5 22 0 4 3 7 55 88888888888 2 0 555 8888888888888888888 000 0 777 0 88 7 7 7 3 9 7 7 444444444 9 7 99 77777777
consensus : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTT---A---TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCAACCTGGTGGTGTAGATGTA---CC-T-GGTTATCG-T-TTGTTCCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
Reference ( family-8126 ) : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTCCTCTTGATCTTGT--ATGACCTATTTTGTATCTTNTTCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAATGTTTAC--------ACACGTT-GTT--ACTATCGNTCTTGATTTTCTTTTATATGTTACTCCTGACTTGTATACCCTTAAGGGCCACTGAATTGGTTTAATNAATTATTCTATTCCAATACAACTATAATACGTTNNTATNATTTTAACAAACGTTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCNCCCCCTCTCTGAACCCTTGCCGAAANTCNACTCTCNCCTCCGTTACTNCGCGAATCGACCGCATACA-TTAT-ACA-GAT-----T-TGTCCATCGAGTACGTCCCA-AATCCTGAGTGTTAAGCAATGAAGGACGATGAAAAATAAAACGTTTGGATTA----CTT---A---TCAAGTTTTGCTGCGTAATTATTCTA--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTCCATCCCGCAAATT-GTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCGGGCAACCTGGTGATGTAGATGTA---CC-T-GGCTA-CG-T-TTGTTCCGTGC---GATATNT---CTNTTGT--AAAA-GT-AATGGTTAGAAATGCAAGAAAAAAC-GGTAAC-CTAC-----T---TTACT-GCCGAATTTCAAGC--GGAGATTAT--------CGACTCCCCCGG
gi|1 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAATCGCACTGTACATGTATTGA-AAAA-----CAGCAAAA-ACGCCT----GAA-TCGAATGAATTAGCACT--TCCAATTTCTCTTGATCTTGT--ATGACCTATTTTGTACCCCCCCCCCTCTGTAACGGATAGATGG-AGCCAAAGTGT-----ATGCT---------------TCTGTAAATGAAACTAAT--TTAT--------ACAATTC-GTT--ACTATCGGTCTTAATTTTCTTTTATATGTTACTCTTGACTTGTATGCCCTTAAGGGCCACTGAATTGGTTTAATAAAT----CTA---------AACTATAATACGTTTATATAATTTTAACAAACATTCAGAGGAATGTCAACACTTATTTTGCCGCCCCCCCCCCCCCTCTCTGAATCCTTACCGAAAATCTACTCTCCCCTCCGTTACTTCGCGAATCGACCGCATACA-TTAT--CATGAT-----TATGTCCA-CGAGTATTTCCCA-AATCCTGAGTGTTAAGCAATGAAGGATAATGAAAAATAAAGCGTTTGGATCA----CTTAAAA---TCAAGGTTTGCTGCGGAATTATTCTT--TAATGCAATG-TTTTTGTCACCGACACAGCGAAAATGTTACACCATGCATATT-GTATCGAAGTGTTTGACCATATTAGAAGGTTAAT--------CCAGGCAACCTGGTGATGTAGATGTA---CC-T-TG-----------GTTCCGTGA---GATATAT---CTTTTGT--AAAA-GT-AATGGCTATAAATGCAAGAAAAAAG-CGTGAC-CTAC-----C---TT-CTGGCCGAAATTGAAGC--GAGGATTTT--------CGACTCCCCCAG
gi|10 : ACA-TTAT-ACA-TATGTCTTT-TGTACAT-----ACGTCACACAGTCGTGGGTGTTAAACAATGACGAACGATGAAAAGTAAAACAGTTGGATTACATGCTT-------TCTGCTTTTGCTGAGTAATTATTCTA--T
gi|11 : caaaactacagtcatca-TTGCTCCGTGC---GATATATTATCTGTTGT--AAAATGC-AA--GAAAAAAA---AAAAAAAAAC-GGTTGC-GTAC-----T---TTACT-GTCGAACTCCAAGC--GGAGATTTC--------CTACCCCCCgta
gi|13 : ggttatcataACGGATAGATGG-AGCCAAAGTGT-----ATGTT---------------TTTGTAAATGAAACTAAGGTTTAC--------ATA--TT-GTT--ACTATCGGGCTTGATTTTCTTTTATATGTTACTCTTGACTTGTaccccgaagtagcggcagtgc
gi|14 : AAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT--------CTGGGC-AC------------ATTTA---CCTT-GATTATCG-TATTGCTCTGTGT---GAT
gi|15 : AGCCTACCT-CGA-TAGTTATTTCACAATTCAAAAACCGCACT--A------TTGA-AAAA-----CAGCAAAA-ACGCCG----GAA-TCGAATGAACTAGCACT--TCCAATT
gi|16 : CAGCCTGCCT-CGA-TTGTTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAA-ACGCCTTCAGGAA-TCGAATGTATtg
gi|17 : TA----CT----A---TCAAACTTTGCTGCGTAATTATTCTG--TGATGGAATGATTTTTGTTATGGACACGGCGAAgtg
gi|2 : atcTATTTCACAATTCAAAAACCGCACTGTA------TTGA-AAAA-----CAGCAAAC-ACGTCT----GAA-TCGAATGAATTAGCACT--TCCGATTTCTCTTGATCTTGT--ATGACCTATTTGGTATTTTGTTCCCTCTGTAACGGATTGATGG-AGCCAAAGTGT-----ATGCTTTTTTTCTAATCATGTCTGTAAATGAAACTAATGTTTACATATTGTTACATGTT-GTT--ACTATCATTCTTGAT-----------TGTTACTCCTGACTTGTATACCCTTATAGGCc
gi|2 : cTCCCA-AATCCTGAGTGGTAAGCAATGAAGGTCAATGAAAAATAAAACATTTGGTTTA----CTT---AAAATCAAGGTTTGCTGCCGAATTATTCGA--TAATGCAATG-TTTTCGTCACTGACACAGCGAAAATGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttcccaaatcctgagtggtaagcaatgaaggtcaatgaaaaataaaacatttggtttacttaaaatcaaggtttgctgccgaattattcgataatgcaatgttttcgtcactgacacagcgaaaatgtt
gi|3 : ctatttcacaattcaaaaaccgcactgtattgaaaaacagcaaacacgtctgaatcgaatgaattagcacttccgatttctcttgatcttgtatgacctatttggtattttgttccctctgtaacggattgatggagccaaagtgtatgctttttttctaatcatgtctgtaaatgaaactaatgtttacatattgttacatgttgttactatcattcttgattgttactcctgacttgtatacccttataggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattGCA------CTGAGAAAA-----CAGCAAAA--CGC------GA---TGAATGA-TTAGCACTCTTCCAATTCCT--------TGTCAATGAC-TATTTT-TATTT------CTC-GTAACGGATA-ATGG-A-CCAAGGAGCTTCTAATCAT---------------TCT-TAAATGAAACTAATGTTTAC--------ATACGTTTGTTTTACTATCATTCT-GATTTCTTCTTATATAGTACTGC-GA-TTGTATACCCTATAGAACC---GAAT-GGTTTAATCAATTATTCTATTCCAATACAACTATAATACATTATTATCATT----CAAACG--CAGAGAAATGT-AACAC-TATTT----------CCACCCCCTCTCTGAACCCTTG-CGAAATTCGACTCTCGCCTCCGTT--TATACGAA--GACCGCATGTATTTGTAACA-GAT-----T---TCCATCGAGT
gi|4 : TTA----CT----A---TCAAGTTT-GCTACGTAATCATTCCA--TATTGCAATG-TTTGT-TCACTAACAAACCAAAAATGTTCCATTCTGCAAATT-GTGCCGAATTATTTGGCCATATCAGAAGGTTAAT-----------------CTGG----GCACATTTA---CC-T-------TG-A-TTAT------C---G-TATTG---CTCT-GT-------GT-GAT--------ATGCAAGACAATAC-GATAACGCT-C-----T---TTACT-GTTGAATCTCAAGCAGGGAGATTAT--------TGACTCCCCTGGg
gi|5 : atgacT---A---TCAAGTTTTGCTGCATAATTATTCTAAATAATGTAAT--TTTTTGTCACCGACACAGCGAACATGACCCAGTC-------T-GTG--GAAGTGTTGGACCACACTAAAAGGTTAATTGTTTAATCTAGGCAAACTGCTGATGTAGATGTA---CC-TTAGCTATCG-TATTGTTCCGTGC---AATATAT---CTATTGT--AAAA-GT-AATGGTTAGAAATGCAAG-AAAAAC-CGTAAA-CTAC-----T---TTACA-ATCGAATTTCAAGC--GGAAATTATCAACAAAGCGACTCCCCCagttaaaagcgactaccccgttctttttagcgactccccccaaagtgacggttgtgcacgg
gi|6 : cGTGAAATTGTTCAATCCCGCAAATTTGTGCCGAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCAATCTGGTGGTGTAGATGTAGG-TT-T-GGTTA-CGTT-TTGTTCCGTGCGATGATGTTT---CTTTTGTTAAAAA-GTAAATGGTTAGAAATGCAAGCAAAAAC-GGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGA-TAT--------TGAATCCCCCGGaaaataacggctagtgcacag
gi|7 : ggGAAATTGTTCAATCCCGCAAATT-GTGC-GAAGTGTTTGACCATACTAGAAGGTTAAT--------CCAGGCAACCTGGTGGTGTAGATGTAGGTTT-T-GGTTATCG-T-TTGTTCCGTGT---GATGTTT---CTTTTGTA-AAAA-GT-AATGGTTAGAAATGCAAGCAAAAACTGGTAAC-CTAC-----T---TTCCT-GCCGAATTTCAAGC--GGAGATTAT--------TGAATCCCCCcattaaaagtgaccccccaccccccccgttccgtttagtgactccccc
gi|8 : ggCTGCCTACGAATTGCTATTTCACA-TTCAAAACCCGCATT--A------TTGA-AAAAACAGGCGGCAAAACACGCCT----GAAATC-AATGAAATAGCACT--TCCAATTCTTCTT-ATAT-GT--ATGACCTATTTTGTATCTTTTTCCCTCTGAAACGGATAAATGGAAGCCAAAGTGT-----Atggcattaaaagtgaccccc
gi|9 : AAA-GT-AATGATTAGAAATGCAAGAAAAA-T-GGTAAC-CTATATAATTAAATTACT-GCCGAATTCCAAGC--GGAGATTAT--------CGAgacatataatttattactaaatcaatgttccgtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCTTAAAATTCTTCCCTTAAAATTTGTGTCATTCAGCCACTTTCACTTCTTTAAAAATGCAAGTATATATGAACCCCCCCCCCCCCCCCCAATCTTTAATCTTGCATGCAAGATTTATCTCCCT